Citrus Sinensis ID: 011044

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MIASANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRCLKMLRR
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEcccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEcccHHHHccccccEEEccccEEcccccHHHcccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHccccccEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccHcHHHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHcHHcccEEEccccccccccccccccccccEEEcccccccccHcHcccccccEEEcccccccccccccccccccEEEEccccccccccccHcccccccHccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
miasanttsitTDQQALLVLKAhvtddptnflaknwntsssfcywtgvtcdvRSHRVAALNisglnltgtipselanlsslqaldlsfnwfygsipssiFNMSSLLSIYFnnntlfgelppnfcnqmSNLESLFLKYNmfhgkipstlsscKQLRElslssnyfsgtipkeignltklTRLNLRQNKLQGEIPEELGNLAELEMLWLQnnsltgtipssIFSLSSLLNldlslnnftgiipssignlSSLQKLylsdnqlsgelpanignnlpslqTLSLYVndfsgaipkeignltkLTDLYLDqnklqgkipheigNLRKLEWLMLSHNKlvgvvpapifNLSTLISLQlhnnslsgslpssadvplpnleeLFLWEygregrvstngdiyNFGIMIMEtftakkptdeifngEMTLRRWVNDLLSISVMEVVDANllswkdkhfmtKEQCMSFVFNLAMEctvespireSTQRKLLQDSQKLETRCLKMLRR
Flexible Loop (DISEMBL)
miasanttsittdQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVEspirestqrkllqdsqkletrclkmlrr
Low Complexity Region (SEG)
MIASANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPssifslssllnldlslnnFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRCLKMLRR
Disordered region (IsUnstruct)
*************QQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN***********VPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE****************************
Disordered Region (DISOPRED)
MIAS***TSITTDQQALLVLKAHVT***********NTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRCLKM***
Disordered Region (DISEMBL)
**********TTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRCLKMLRR
Disordered Region (DISPRO)
****ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRCLKMLRR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIASANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRCLKMLRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q9LVP0	1102	Probable leucine-rich rep	yes	no	0.711	0.319	0.387	4e-57
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.761	0.376	0.355	7e-57
C0LGT6	1031	LRR receptor-like serine/	no	no	0.658	0.316	0.363	3e-55
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.713	0.282	0.358	4e-55
Q9LP24	1120	Probable leucine-rich rep	no	no	0.593	0.262	0.472	3e-54
P93194	1109	Receptor-like protein kin	N/A	no	0.739	0.330	0.361	2e-53
O49545	1003	Leucine-rich repeat recep	no	no	0.759	0.374	0.342	2e-53
O49318	1124	Probable leucine-rich rep	no	no	0.713	0.314	0.368	3e-53
Q9FL28	1173	LRR receptor-like serine/	no	no	0.650	0.274	0.386	9e-53
O65440	992	Leucine-rich repeat recep	no	no	0.707	0.352	0.369	6e-51

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 196/359 (54%), Gaps = 7/359 (1%)

Query: 7   TTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSF-CYWTGVTCDVRSH--RVAALNIS 63
           TT +  + Q LL +K+   D   N   +NWN++ S  C WTGV C   S    V +LN+S
Sbjct: 24  TTGLNLEGQYLLEIKSKFVDAKQNL--RNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLS 81

Query: 64  GLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNF 123
            + L+G +   +  L  L+ LDLS+N   G IP  I N SSL  +  NNN   GE+P   
Sbjct: 82  SMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEI 141

Query: 124 CNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
             ++ +LE+L +  N   G +P  + +   L +L   SN  SG +P+ IGNL +LT    
Sbjct: 142 -GKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRA 200

Query: 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSS 243
            QN + G +P E+G    L ML L  N L+G +P  I  L  L  + L  N F+G IP  
Sbjct: 201 GQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPRE 260

Query: 244 IGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
           I N +SL+ L L  NQL G +P  +G +L SL+ L LY N  +G IP+EIGNL+   ++ 
Sbjct: 261 ISNCTSLETLALYKNQLVGPIPKELG-DLQSLEFLYLYRNGLNGTIPREIGNLSYAIEID 319

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
             +N L G+IP E+GN+  LE L L  N+L G +P  +  L  L  L L  N+L+G +P
Sbjct: 320 FSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIP 378

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  221 bits (564), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 220/428 (51%), Gaps = 51/428 (11%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
           T+  ALL LK+  T D  + L  +WN S++FC WTGVTCDV    V +L++SGLNL+GT+
Sbjct: 26  TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
            S++A+L  LQ L L+ N   G IP  I N+  L  +  +NN   G  P    + + NL 
Sbjct: 86  SSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK--------------------- 170
            L L  N   G +P +L++  QLR L L  NYFSG IP                      
Sbjct: 146 VLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGK 205

Query: 171 ----------------------------EIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
                                       EIGNL++L R +     L GEIP E+G L +L
Sbjct: 206 IPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKL 265

Query: 203 EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
           + L+LQ N+ TGTI   +  +SSL ++DLS N FTG IP+S   L +L  L L  N+L G
Sbjct: 266 DTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYG 325

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRK 322
            +P  IG  +P L+ L L+ N+F+G+IP+++G   +L  L L  NKL G +P  + +  +
Sbjct: 326 AIPEFIG-EMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNR 384

Query: 323 LEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGR 382
           L  L+   N L G +P  +    +L  +++  N L+GS+P      LP L ++ L +   
Sbjct: 385 LMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKEL-FGLPKLSQVELQDNYL 443

Query: 383 EGRVSTNG 390
            G +  +G
Sbjct: 444 TGELPISG 451

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  216 bits (550), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/382 (36%), Positives = 202/382 (52%), Gaps = 56/382 (14%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
           TD QALL  K+ V+++    +  +WN SS FC W GVTC  R  RV +LN+ G  LTG I
Sbjct: 30  TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVI 89

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
              + NLS L+ L+L+ N F  +IP  +                          ++  L+
Sbjct: 90  SPSIGNLSFLRLLNLADNSFGSTIPQKV-------------------------GRLFRLQ 124

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
            L + YN+  G+IPS+LS+C +L  + LSSN+    +P E+G+L+KL  L+L +N L G 
Sbjct: 125 YLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGN 184

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQ 251
            P  LGNL  L+ L    N + G IP  +  L+ ++   ++LN+F+G  P ++ N+SSL+
Sbjct: 185 FPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLE 244

Query: 252 KLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG 311
            L L+DN  SG L A+ G  LP+L+ L L  N F+GAIPK + N++ L    +  N L G
Sbjct: 245 SLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSG 304

Query: 312 KIPHEIGNLR------------------------------KLEWLMLSHNKLVGVVPAPI 341
            IP   G LR                              +LE+L + +N+L G +PA I
Sbjct: 305 SIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASI 364

Query: 342 FNLS-TLISLQLHNNSLSGSLP 362
            NLS TL SL L  N +SG++P
Sbjct: 365 ANLSTTLTSLFLGQNLISGTIP 386

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  216 bits (549), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 216/427 (50%), Gaps = 74/427 (17%)

Query: 10  ITTDQQALL-VLKAHVTDDPTNFLAKNWNTSS-SFCYWTGVTCDVRS-HRVAALNISGLN 66
           I  D Q LL V K+ VT+   +   + WN+ + ++C WTGVTCD     RV ALN++GL 
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLG 82

Query: 67  LTGTI------------------------PSELANLSSLQALDLSFNWFYGSIPSSIFNM 102
           LTG+I                        P+ L+NL+SL++L L  N   G IPS + ++
Sbjct: 83  LTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSL 142

Query: 103 SSLLSIYFNNNTLFGELP-----------------------PNFCNQMSNLESLFLKYNM 139
            ++ S+   +N L G++P                       P+   ++  ++SL L+ N 
Sbjct: 143 VNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNY 202

Query: 140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNL 199
             G IP+ L +C  L   + + N  +GTIP E+G L  L  LNL  N L GEIP +LG +
Sbjct: 203 LEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEM 262

Query: 200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
           ++L+ L L  N L G IP S+  L +L  LDLS NN TG IP    N+S L  L L++N 
Sbjct: 263 SQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNH 322

Query: 260 LSGELPANIGNN-----------------LP-------SLQTLSLYVNDFSGAIPKEIGN 295
           LSG LP +I +N                 +P       SL+ L L  N  +G+IP+ +  
Sbjct: 323 LSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFE 382

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
           L +LTDLYL  N L+G +   I NL  L+WL+L HN L G +P  I  L  L  L L+ N
Sbjct: 383 LVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYEN 442

Query: 356 SLSGSLP 362
             SG +P
Sbjct: 443 RFSGEIP 449

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  213 bits (542), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/296 (47%), Positives = 178/296 (60%), Gaps = 2/296 (0%)

Query: 67  LTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQ 126
           LT  IPSEL N+ S+  L LS N   GSIPSS+ N+ +L+ +Y   N L G +PP   N 
Sbjct: 162 LTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGN- 220

Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
           M ++  L L  N   G IPSTL + K L  L L  NY +G IP EIGN+  +T L L QN
Sbjct: 221 MESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQN 280

Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN 246
           KL G IP  LGNL  L +L L  N LTG IP  + ++ S+++L+LS N  TG IPSS+GN
Sbjct: 281 KLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGN 340

Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
           L +L  LYL +N L+G +P  +G N+ S+  L L  N  +G+IP   GNL  LT LYL  
Sbjct: 341 LKNLTILYLYENYLTGVIPPELG-NMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYL 399

Query: 307 NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
           N L G IP E+GN+  +  L LS NKL G VP    N + L SL L  N LSG++P
Sbjct: 400 NYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIP 455

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 213/396 (53%), Gaps = 30/396 (7%)

Query: 9   SITTDQQALLVLKAHVTDDPTNFLAKNWNTS-SSFCYWTGVTCDVRSHRVAALNISGLNL 67
           ++ +D  ALL L  H T  P++ + ++WN S S+ C W GV CD R   V  LN+S   +
Sbjct: 23  ALNSDGAALLSLTRHWTSIPSD-ITQSWNASDSTPCSWLGVECD-RRQFVDTLNLSSYGI 80

Query: 68  TGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQM 127
           +G    E+++L  L+ + LS N F+GSIPS + N S L  I  ++N+  G +P      +
Sbjct: 81  SGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTL-GAL 139

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
            NL +L L +N   G  P +L S   L  +  + N  +G+IP  IGN+++LT L L  N+
Sbjct: 140 QNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQ 199

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNL 247
             G +P  LGN+  L+ L+L +N+L GT+P ++ +L +L+ LD+  N+  G IP    + 
Sbjct: 200 FSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSC 259

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY---- 303
             +  + LS+NQ +G LP  +GN   SL+    +    SG IP   G LTKL  LY    
Sbjct: 260 KQIDTISLSNNQFTGGLPPGLGN-CTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGN 318

Query: 304 --------------------LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN 343
                               L QN+L+G+IP E+G L +L++L L  N L G VP  I+ 
Sbjct: 319 HFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWK 378

Query: 344 LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWE 379
           + +L SLQL+ N+LSG LP      L  L  L L+E
Sbjct: 379 IQSLQSLQLYQNNLSGELPVDM-TELKQLVSLALYE 413

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/429 (34%), Positives = 218/429 (50%), Gaps = 53/429 (12%)

Query: 15  QALLVLKAHVTD--DPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIP 72
           +ALL LK  +T   D  N    +W  S+SFC W GVTCDV    V +L++SGLNL+GT+ 
Sbjct: 27  RALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLS 86

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
            ++++L  LQ L L+ N   G IP  I ++S L  +  +NN   G  P    + + NL  
Sbjct: 87  PDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRV 146

Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI------------------------ 168
           L +  N   G +P ++++  QLR L L  NYF+G I                        
Sbjct: 147 LDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKI 206

Query: 169 -------------------------PKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
                                    P EIGNL++L R +     L GEIP E+G L +L+
Sbjct: 207 PPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLD 266

Query: 204 MLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263
            L+LQ N  +G +   + +LSSL ++DLS N FTG IP+S   L +L  L L  N+L GE
Sbjct: 267 TLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGE 326

Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKL 323
           +P  IG +LP L+ L L+ N+F+G+IP+++G   KL  + L  NKL G +P  + +  KL
Sbjct: 327 IPEFIG-DLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKL 385

Query: 324 EWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE 383
           E L+   N L G +P  +    +L  +++  N L+GS+P      LP L ++ L +    
Sbjct: 386 ETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGL-FGLPKLTQVELQDNYLS 444

Query: 384 GRVSTNGDI 392
           G +   G +
Sbjct: 445 GELPVAGGV 453

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 199/388 (51%), Gaps = 35/388 (9%)

Query: 7   TTSITTDQQALLVLKAHVTDDPTNFLAKNWN-TSSSFCYWTGVTCDVRSHR-------VA 58
           + S+ +D Q LL LK     D  N L  NWN    + C W GV C  +          V 
Sbjct: 30  SESLNSDGQFLLELKNRGFQDSLNRL-HNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVT 88

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           +L++S +NL+G +   +  L +L  L+L++N   G IP  I N S L  ++ NNN   G 
Sbjct: 89  SLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGS 148

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
           +P    N++S L S  +  N   G +P  +     L EL   +N  +G +P+ +GNL KL
Sbjct: 149 IPVEI-NKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKL 207

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
           T     QN   G IP E+G    L++L L  N ++G +P  I  L  L  + L  N F+G
Sbjct: 208 TTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSG 267

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
            IP  IGNL+SL+ L L  N L G +P+ IGN + SL+ L LY N  +G IPKE+G L+K
Sbjct: 268 FIPKDIGNLTSLETLALYGNSLVGPIPSEIGN-MKSLKKLYLYQNQLNGTIPKELGKLSK 326

Query: 299 LTD------------------------LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLV 334
           + +                        LYL QNKL G IP+E+  LR L  L LS N L 
Sbjct: 327 VMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLT 386

Query: 335 GVVPAPIFNLSTLISLQLHNNSLSGSLP 362
           G +P    NL+++  LQL +NSLSG +P
Sbjct: 387 GPIPPGFQNLTSMRQLQLFHNSLSGVIP 414

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  208 bits (529), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 136/352 (38%), Positives = 187/352 (53%), Gaps = 30/352 (8%)

Query: 15  QALLVLKAHVTDDPTNFLAKNWNTSSSF--CYWTGVTCDVRSHRVAALNISGLNLTGTIP 72
           +AL   K  +++DP   L+ +W    S   C WTG+TCD   H V ++++    L G + 
Sbjct: 32  EALKSFKNGISNDPLGVLS-DWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLS 89

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
             +ANL+ LQ LDL+ N F G IP+ I                          +++ L  
Sbjct: 90  PAIANLTYLQVLDLTSNSFTGKIPAEI-------------------------GKLTELNQ 124

Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
           L L  N F G IPS +   K +  L L +N  SG +P+EI   + L  +    N L G+I
Sbjct: 125 LILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKI 184

Query: 193 PEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQK 252
           PE LG+L  L+M     N LTG+IP SI +L++L +LDLS N  TG IP   GNL +LQ 
Sbjct: 185 PECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQS 244

Query: 253 LYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGK 312
           L L++N L G++PA IG N  SL  L LY N  +G IP E+GNL +L  L + +NKL   
Sbjct: 245 LVLTENLLEGDIPAEIG-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS 303

Query: 313 IPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
           IP  +  L +L  L LS N LVG +   I  L +L  L LH+N+ +G  P S
Sbjct: 304 IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQS 355

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 199/355 (56%), Gaps = 5/355 (1%)

Query: 14  QQALLVLKAHVTDDPTNFLAKNWNTSS--SFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
           +QA +++    + D  +    +WN  +  S C WTGV+CD  +  +  L++S LN++GTI
Sbjct: 33  RQANVLISLKQSFDSYDPSLDSWNIPNFNSLCSWTGVSCDNLNQSITRLDLSNLNISGTI 92

Query: 72  PSELANLS-SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNL 130
             E++ LS SL  LD+S N F G +P  I+ +S L  +  ++N   GEL     +QM+ L
Sbjct: 93  SPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQL 152

Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
            +L    N F+G +P +L++  +L  L L  NYF G IP+  G+   L  L+L  N L+G
Sbjct: 153 VTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRG 212

Query: 191 EIPEELGNLAELEMLWL-QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS 249
            IP EL N+  L  L+L   N   G IP+    L +L++LDL+  +  G IP+ +GNL +
Sbjct: 213 RIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKN 272

Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
           L+ L+L  N+L+G +P  +G N+ SL+TL L  N   G IP E+  L KL    L  N+L
Sbjct: 273 LEVLFLQTNELTGSVPRELG-NMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRL 331

Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
            G+IP  +  L  L+ L L HN   G +P+ + +   LI + L  N L+G +P S
Sbjct: 332 HGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPES 386

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
296086336	628	unnamed protein product [Vitis vinifera]	0.925	0.729	0.346	9e-74
449500845	982	PREDICTED: probable LRR receptor-like se	0.842	0.424	0.402	1e-71
449465016	1092	PREDICTED: probable LRR receptor-like se	0.836	0.379	0.405	2e-71
359483198	1087	PREDICTED: probable LRR receptor-like se	0.686	0.312	0.434	3e-70
302143445	2843	unnamed protein product [Vitis vinifera]	0.751	0.130	0.387	4e-70
147852480	1229	hypothetical protein VITISV_039533 [Viti	0.757	0.305	0.417	2e-69
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.757	0.311	0.412	5e-69
359485453	1202	PREDICTED: probable LRR receptor-like se	0.737	0.303	0.372	7e-69
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.737	0.320	0.400	2e-68
359483683	1228	PREDICTED: LRR receptor-like serine/thre	0.755	0.304	0.405	9e-68

>gi|296086336|emb|CBI31777.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 213/615 (34%), Positives = 288/615 (46%), Gaps = 157/615 (25%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
            D+ +LL +KAH+T D  + LA NW+T++S+C W GV+CD    RV AL++S ++L GTI
Sbjct: 33  ADELSLLAMKAHITSDSKDVLATNWSTTTSYCNWFGVSCDAARQRVIALDLSNMDLEGTI 92

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
             ++ NLS L  LDLS N F+ SIP+ I     L  +Y  NN L G +P    N +S LE
Sbjct: 93  APQVGNLSFLVTLDLSNNSFHASIPNEIAKCRELRQLYLFNNRLTGSIPQAIGN-LSKLE 151

Query: 132 SLFLKYNMFHGKIPSTLS---------------------------------SCKQLRELS 158
            L+L  N   G+IP  +S                                  C +L E+S
Sbjct: 152 QLYLGGNQLTGEIPREISHLLSLKILSFRSNNLTASIPSAIFNISSLQYIGKCGRLEEIS 211

Query: 159 LSSNYFSGTIPKEIG------------------------NLTKLTRL---NLRQNKLQGE 191
           LS N F G+IP+ IG                        NL+ L RL   NL QN+L+GE
Sbjct: 212 LSFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGEIPQTLFNLSSLPRLQVINLSQNQLKGE 271

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG-IIPSSIGNLSSL 250
           IP  L N  EL+ L+L+ N + G IP  +  LS L  L L+ N  TG IIP+SI N++ L
Sbjct: 272 IPPSLSNCGELQTLYLEKNKIQGNIPKELGHLSELQYLSLASNILTGGIIPASISNITKL 331

Query: 251 QKLYLSDN------------------QLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE 292
            +L LS N                  Q  G +PA IGN L +L  L L  ND +G IP  
Sbjct: 332 TRLDLSYNLLTGFLGFLTSFINASACQFKGVIPAGIGN-LTNLIELGLGDNDLTGMIPTT 390

Query: 293 IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLML-----------SHNKLVGVV---- 337
           +G L KL  LY+  N++ G +P+ IG+L  L +L L           S NKL G +    
Sbjct: 391 LGQLKKLQRLYIAGNRIHGSVPNGIGHLANLVYLFLKALVSLKYLNVSFNKLEGEIPDKG 450

Query: 338 ---------------PAPI--FNLSTL--ISLQ--------------LHNNSLS----GS 360
                          PA +  F+L  L  IS Q              +   SL     G 
Sbjct: 451 PFANFTTERRSKSKAPAQVNSFHLGKLRRISHQELIYATNYFGEDNMIGTGSLGMVHRGV 510

Query: 361 LPSSADVPLPNLEEL-----FLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG 415
           L    ++ +     L        EYG EG VST GD+Y++GIM+METF  KKPTDE+F G
Sbjct: 511 LSDGLNIMIDQTRTLGTIGYMAPEYGSEGIVSTRGDVYSYGIMMMETFARKKPTDEMFGG 570

Query: 416 EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQ 475
           E+TLR WV  L    VM                  E C+  +  LA+ECT ESP      
Sbjct: 571 EVTLRSWVESLAG-RVM------------------ESCLRSIMALALECTTESPRDRIDM 611

Query: 476 RKLLQDSQKLETRCL 490
           ++++   +K+  + L
Sbjct: 612 KEVVVRLKKIRIKLL 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500845|ref|XP_004161209.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 172/427 (40%), Positives = 248/427 (58%), Gaps = 10/427 (2%)

Query: 2   IASANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALN 61
           I+ A   +ITTDQ ALL L+AH+T DP   +  +W+ ++S C W G+ C V+  RV +LN
Sbjct: 21  ISMAFAQNITTDQAALLALRAHITSDPFGIITNHWSATTSVCNWVGIICGVKHKRVTSLN 80

Query: 62  ISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPP 121
            S + LTGT P E+  LS L  + +  N F+  +P  + N+  L  +   NN   GE+ P
Sbjct: 81  FSFMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGEI-P 139

Query: 122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRL 181
            +  ++  +E L+L  N F G IP++L +   L  L+L  N  SG+IP+EIGNLT L  L
Sbjct: 140 TWIGRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPREIGNLTLLQDL 199

Query: 182 NLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIP 241
            L  N+L  EIP E+G L  L  L ++ N  +G IP  IF+LSSL+ L LS NNF G +P
Sbjct: 200 YLNSNQLT-EIPTEIGTLQSLRTLDIEFNLFSGPIPLFIFNLSSLVILGLSGNNFIGGLP 258

Query: 242 SSIG-NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLT 300
             I  +L SL  LYLS NQLSG+LP+ +     +L+ ++L  N F+G+IP+ +GNLT++ 
Sbjct: 259 DDICEDLPSLGGLYLSYNQLSGQLPSTLW-KCENLEDVALAYNQFTGSIPRNVGNLTRVK 317

Query: 301 DLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360
            ++L  N L G+IP+E+G L+ LE+L +  N   G +P  IFNLS L ++ L  N LSG+
Sbjct: 318 QIFLGVNYLSGEIPYELGYLQNLEYLAMQENFFNGTIPPTIFNLSKLNTIALVKNQLSGT 377

Query: 361 LPSSADVPLPNLEELFLWEYGREGRVS---TNGDIYNFGIMIMETFTAKKPTDEIFNGEM 417
           LP+   V LPNL +L L      G +    TN  +     +   +F+   P   +F G  
Sbjct: 378 LPADLGVGLPNLVQLMLGRNKLTGTIPESITNSSMLTLFDVGDNSFSGLIP--NVF-GRF 434

Query: 418 TLRRWVN 424
              RW+N
Sbjct: 435 ENLRWIN 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465016|ref|XP_004150225.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/424 (40%), Positives = 245/424 (57%), Gaps = 10/424 (2%)

Query: 5   ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISG 64
           A   +ITTDQ ALL L+AH+T DP      NW+ ++S C W G+ C V+  RV +LN S 
Sbjct: 2   AFAQNITTDQAALLALRAHITSDPFGITTNNWSATTSVCNWVGIICGVKHKRVTSLNFSF 61

Query: 65  LNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
           + LTGT P E+  LS L  + +  N F+  +P  + N+  L  +   NN   GE+ P + 
Sbjct: 62  MGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGEI-PTWI 120

Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
            ++  +E L+L  N F G IP++L +   L  L+L  N  SG+IP+EIGNLT L  L L 
Sbjct: 121 GRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPREIGNLTLLQDLYLN 180

Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSI 244
            N+L  EIP E+G L  L  L ++ N  +G IP  IF+LSSL+ L LS NNF G +P  I
Sbjct: 181 SNQLT-EIPTEIGTLQSLRTLDIEFNLFSGPIPLFIFNLSSLVILGLSGNNFIGGLPDDI 239

Query: 245 G-NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
             +L SL  LYLS NQLSG+LP+ +     +L+ ++L  N F+G+IP+ +GNLT++  ++
Sbjct: 240 CEDLPSLGGLYLSYNQLSGQLPSTLW-KCENLEDVALAYNQFTGSIPRNVGNLTRVKQIF 298

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
           L  N L G+IP+E+G L+ LE+L +  N   G +P  IFNLS L ++ L  N LSG+LP+
Sbjct: 299 LGVNYLSGEIPYELGYLQNLEYLAMQENFFNGTIPPTIFNLSKLNTIALVKNQLSGTLPA 358

Query: 364 SADVPLPNLEELFLWEYGREGRVS---TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR 420
              V LPNL +L L      G +    TN  +     +   +F+   P   +F G     
Sbjct: 359 DLGVGLPNLVQLMLGRNELTGTIPESITNSSMLTLFDVGDNSFSGLIP--NVF-GRFENL 415

Query: 421 RWVN 424
           RW+N
Sbjct: 416 RWIN 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/368 (43%), Positives = 222/368 (60%), Gaps = 28/368 (7%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
           TDQ +LL LKAH+T DP + LA NW+T +SFC W GV+C+ +  RV AL++S L L GTI
Sbjct: 31  TDQSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCNAQQQRVIALDLSNLGLRGTI 90

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
           P +L NLS L +LDLS N F+G +P  +  ++SLLS+    N L G++PP+F N ++ L+
Sbjct: 91  PPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQYNLLSGQIPPSFGN-LNRLQ 149

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
           SLFL  N F G IP ++ +   L  L L  N+  G IP+EIG L+ +  L+++ N+L G 
Sbjct: 150 SLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQGNIPEEIGKLSTMKILDIQSNQLVGA 209

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSI--FSLSSLLNLDLSLNNFTGIIPSSIGNLSS 249
           IP  + N++ L+ + L  NSL+G +PSS+    LS+L  + LS N FTG IPS++     
Sbjct: 210 IPSAIFNISSLQEIALTYNSLSGDLPSSMCNHELSALRGIRLSANRFTGPIPSNLSKCGE 269

Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
           LQ LYLS                          N F+G IP+ I +LTKLT L L  N L
Sbjct: 270 LQTLYLS-------------------------FNKFTGGIPRSIDSLTKLTMLSLAANSL 304

Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPL 369
            G++P EIG+L  L  L +  N L G +P  IFN+S+++S  L  N+LSG+LP +    L
Sbjct: 305 SGEVPCEIGSLCTLNVLNIEDNSLTGHIPFQIFNISSMVSGSLTRNNLSGNLPPNFGSYL 364

Query: 370 PNLEELFL 377
           PNLE L L
Sbjct: 365 PNLENLIL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143445|emb|CBI22006.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 173/447 (38%), Positives = 232/447 (51%), Gaps = 75/447 (16%)

Query: 15   QALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSE 74
            Q +L +     D  T  L  NW+T SS+C W G++C+    RV+A+N+S + L GTI  +
Sbjct: 1046 QKMLRVSCPFRDHHTGILVTNWSTKSSYCTWYGISCNAPQQRVSAINLSNMGLEGTIAPQ 1105

Query: 75   LANLSSLQALDLSFNWFY------------------------GSIPSSIFNMSSLLSIYF 110
            + NLS L +LDLS N+F+                        GSIP +I N+S L  +Y 
Sbjct: 1106 VGNLSFLISLDLSNNYFHAFLPKEIGKCKELQQLNLFNNNLVGSIPEAICNLSKLEELYL 1165

Query: 111  NNNTLFGELPPN---------------------------FCNQMSNLESLFLKYNMFHGK 143
             NN L GE+P                              CN    L+ L L  N   G+
Sbjct: 1166 GNNKLAGEIPKKMTTIFNISSLLNISLSYNSLSGNLPMVMCNTNPKLKELNLSSNHLSGE 1225

Query: 144  IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
            IP++LS C +L+ +SLS N F+G+IPK IGNL +L RL+ R N L GEIP+ L N++ L 
Sbjct: 1226 IPTSLSQCIKLQVISLSYNEFTGSIPKGIGNLVELQRLSFRNNNLIGEIPQSLFNISSLR 1285

Query: 204  MLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263
             L L  N L G IPS++     L  L LSLN FTG IP +IG+LS+L++LYL  N L G 
Sbjct: 1286 FLNLAANQLEGEIPSNLSHCRELRVLSLSLNQFTGGIPQAIGSLSNLEELYLGYNNLGGG 1345

Query: 264  LPANIGN------------------------NLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            +P+ IGN                        NL  L+ + L  N+F+  IP   GNLT +
Sbjct: 1346 IPSEIGNLHNLNILNFDNNSLSGRSIIREIGNLSKLEQIYLGRNNFTSTIPPSFGNLTAI 1405

Query: 300  TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
             +L L++N  QG IP E+G L  L+ L L  N L G+VP  I N+S L  L L  N LSG
Sbjct: 1406 QELGLEENNFQGNIPKELGKLINLQILHLGQNNLTGIVPEAIINISKLQVLSLSLNHLSG 1465

Query: 360  SLPSSADVPLPNLEELFLWEYGREGRV 386
            SLPSS    LPNLE L++      G++
Sbjct: 1466 SLPSSIGTWLPNLEGLYIGANEFSGKI 1492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/402 (41%), Positives = 232/402 (57%), Gaps = 27/402 (6%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
            D+ AL+ LKAH+T D    LA NW+T SS+C W G++C+    RV+A+N+S + L GTI
Sbjct: 8   VDEFALIALKAHITYDSQGILATNWSTKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTI 67

Query: 72  PSELANLSSLQALDLSFNWFY------------------------GSIPSSIFNMSSLLS 107
             ++ NLS L +LDLS N+F+                        G IP +I N+S L  
Sbjct: 68  APQVGNLSFLISLDLSNNYFHDSLPKDIGKCKELQQLNLFNNKLVGGIPEAICNLSKLEE 127

Query: 108 IYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT 167
           +Y  NN L GE+P    N + NL+ L    N   G IP+T+ +   L  +SLS+N  SG+
Sbjct: 128 LYLGNNQLIGEIPKKM-NHLQNLKVLSFPMNNLTGFIPATIFNISSLLNISLSNNNLSGS 186

Query: 168 IPKEIGNLT-KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL 226
           +P ++     KL  LNL  N L G+IP  LG   +L+++ L  N  TG+IPS I +L  L
Sbjct: 187 LPMDMCYANPKLKELNLSSNHLSGKIPTGLGQCLKLQVISLAYNDFTGSIPSGIGNLVEL 246

Query: 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286
             L L  N+ TG IP  + N+SSL+ L L+ N L GE+P+N+ ++   L+ LSL +N F+
Sbjct: 247 QRLSLQNNSLTGEIPQLLFNISSLRLLNLAVNNLEGEIPSNL-SHCRELRVLSLSINRFT 305

Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
           G IP+ IG+L+ L +LYL  NKL G IP EIGNL  L  L L  N + G +PA IFN+S+
Sbjct: 306 GGIPQAIGSLSDLEELYLGYNKLTGGIPREIGNLSNLNILQLGSNGISGPIPAEIFNISS 365

Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVST 388
           L  +   NNSLSGSLP      LPNL+ L L      G++ T
Sbjct: 366 LQGIGFSNNSLSGSLPMDICKHLPNLQWLDLALNHLSGQLPT 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 156/378 (41%), Positives = 226/378 (59%), Gaps = 3/378 (0%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
            D+ AL+ LKAH+T D    LA NW+T SS+C W G++C+    RV+ +N+S + L GTI
Sbjct: 8   VDESALIALKAHITYDSQGILATNWSTKSSYCNWYGISCNAPHQRVSXINLSNMGLEGTI 67

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
             ++ NLS L +LDLS N+F+ S+P  I     L  +   NN L G +P   CN +S LE
Sbjct: 68  APQVGNLSFLVSLDLSNNYFHDSLPKDIGKCKELQQLNLFNNKLVGGIPEAICN-LSKLE 126

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
            L+L  N   G+IP  ++  + L+ LS   N  + +IP  I +++ L  ++L  N L G 
Sbjct: 127 ELYLGNNQLIGEIPKKMNXLQNLKVLSFPMNNLTSSIPATIFSISSLLNISLSNNNLSGS 186

Query: 192 IPEELGNL-AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSL 250
           +P ++     +L+ L L +N L+G IP+ +     L  + L+ N+FTG IP+ IGNL  L
Sbjct: 187 LPMDMCYANPKLKELNLSSNHLSGKIPTGLGQCIKLQVISLAYNDFTGSIPNGIGNLVEL 246

Query: 251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
           Q+L L +N L+GE+P+N+ ++   L+ LS   N F+G IP+ IG+L  L +LYL  NKL 
Sbjct: 247 QRLSLRNNSLTGEIPSNL-SHCRELRVLSSSFNQFTGGIPQAIGSLCNLEELYLAFNKLT 305

Query: 311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP 370
           G IP EIGNL  L  L L  N + G +PA IFN+S+L  +   NNSLSGSLP      LP
Sbjct: 306 GGIPREIGNLSNLNILQLGSNGISGPIPAEIFNISSLQVIDFTNNSLSGSLPMGICKHLP 365

Query: 371 NLEELFLWEYGREGRVST 388
           NL+ L+L +    G++ T
Sbjct: 366 NLQGLYLAQNHLSGQLPT 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 179/481 (37%), Positives = 241/481 (50%), Gaps = 116/481 (24%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
            D+ AL+ LKAH+T D    LA NW+T SS C W G+ C+    RV+ +N+S + L GTI
Sbjct: 8   VDEFALIALKAHITKDSQGILATNWSTKSSHCSWYGIFCNAPQQRVSTINLSNMGLEGTI 67

Query: 72  PSELANLSSLQALDLSFNWFYGS------------------------IPSSIFNMSSLLS 107
             ++ NLS L +LDLS N+F+ S                        IP +I N+S L  
Sbjct: 68  APQVGNLSFLVSLDLSNNYFHASLPKDIGKCKDLQQLNLFNNKLVENIPEAICNLSKLEE 127

Query: 108 IYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSS------ 161
           +Y  NN L GE+ P   + + NL+ L L+ N   G IP+T+ +   L  +SLS       
Sbjct: 128 LYLGNNQLTGEI-PKAVSHLHNLKILSLQMNNLIGSIPATIFNISSLLNISLSYNSLSGS 186

Query: 162 -------------NYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQ 208
                        N F+G+IP+ IGNL +L RL+LR N L GEIP+ L N++ L+ L L 
Sbjct: 187 LPMDMLQVIYLSFNEFTGSIPRAIGNLVELERLSLRNNSLTGEIPQSLFNISRLKFLSLA 246

Query: 209 NNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANI 268
            N+L G IPSS+     L  LDLS+N FTG IP +IG+LS+L+ LYL  NQL+G +P  I
Sbjct: 247 ANNLKGEIPSSLLHCRELRLLDLSINQFTGFIPQAIGSLSNLETLYLGFNQLAGGIPGEI 306

Query: 269 G------------------------------------------------NNLPSLQTLSL 280
           G                                                 +LP+LQ L L
Sbjct: 307 GNLSNLNLLNSASSGLSGPIPAEIFNISSLQEIGFANNSLSGSLPMDICKHLPNLQWLLL 366

Query: 281 YVNDFSG------------------------AIPKEIGNLTKLTDLYLDQNKLQGKIPHE 316
            +N  SG                        +IP+EIGNL+KL  +Y  ++   G IP E
Sbjct: 367 SLNQLSGQLPTTLSLCGELLTLTLAYNNFTGSIPREIGNLSKLEQIYFRRSSFTGNIPKE 426

Query: 317 IGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELF 376
           +GNL  L++L L+ N L G+VP  IFN+S L  L L  N LSGSLPSS    LPNLE+L 
Sbjct: 427 LGNLVNLQFLSLNVNNLTGIVPEAIFNISKLQVLSLAGNHLSGSLPSSIGSWLPNLEQLL 486

Query: 377 L 377
           +
Sbjct: 487 I 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/422 (40%), Positives = 227/422 (53%), Gaps = 57/422 (13%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
            D+ AL+ LKAH+T D    LA NW+T S  C W G++C+     V+A+N+S + L GTI
Sbjct: 8   VDEFALIALKAHITYDSQGILATNWSTKSPHCSWIGISCNAPQQSVSAINLSNMGLEGTI 67

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
             ++ NLS L +LDLS N+F+GS+P  I     L  +   NN L G +P   CN +S LE
Sbjct: 68  APQVGNLSFLVSLDLSDNYFHGSLPKDIGKCKELQQLNLFNNKLVGGIPEAICN-LSKLE 126

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT--------------- 176
            L+L  N   G+IP  ++  + L+ LS   N  +G+IP  I N++               
Sbjct: 127 ELYLGNNQLIGEIPKKMNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNLSGS 186

Query: 177 ----------KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL 226
                     KL  LNL  N L G+IP  LG   +L+++ L  N  TG+IPS I +L  L
Sbjct: 187 LPMDMCYANPKLKELNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPSGIDNLVEL 246

Query: 227 LNLDLSLNNFT-------GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT-- 277
             L L  N+FT        ++ + I N+SSLQ +  +DN LSG LP +I  +LP+LQ   
Sbjct: 247 QRLSLQNNSFTAFKDISKALLFAEIFNVSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLS 306

Query: 278 ----------------------LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
                                 LSL  N F G+IPKEIGNL+KL ++YL  N L G IP 
Sbjct: 307 LSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPT 366

Query: 316 EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEEL 375
             GNL+ L++L L  N L G VP  IFN+S L SL +  N LSGSLPSS    LP+LE L
Sbjct: 367 SFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGTWLPDLEGL 426

Query: 376 FL 377
           F+
Sbjct: 427 FI 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 232/402 (57%), Gaps = 28/402 (6%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
            D+ AL+ LKAH+T D    LA NW+T SS C W G++C+    RV+A+N+S + L GTI
Sbjct: 8   VDEFALIALKAHITYDSQGMLATNWSTKSSHCSWYGISCNAPQQRVSAINLSNMGLEGTI 67

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
             ++ NLS L +LDLS N+F GS+P  I     L  +   NN L G +P   CN +S LE
Sbjct: 68  APQVGNLSFLVSLDLSNNYFDGSLPKDIGKCKELQQLNLFNNKLVGSIPEAICN-LSKLE 126

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
            L+L  N   G+IP  +S+   L+ LS   N  +G+IP  I N++ L  ++L  N L G 
Sbjct: 127 ELYLGNNQLIGEIPKKMSNLLNLKVLSFPMNNLTGSIPTTIFNMSSLLNISLSYNSLSGS 186

Query: 192 IPEEL--GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS 249
           +P ++   NL +L+ L L +N L+G +P+ +     L  + LS N+FTG IPS IGNL  
Sbjct: 187 LPMDICYANL-KLKELNLSSNHLSGKVPTGLGQCIKLQGISLSCNDFTGSIPSGIGNLVE 245

Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND-----------------------FS 286
           LQ L L +N L+GE+P ++  N+ SL+ L+L +N+                       F+
Sbjct: 246 LQSLSLQNNSLTGEIPQSL-FNISSLRFLNLEINNLEGEISSFSHCRELRVLKLSINQFT 304

Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
           G IPK +G+L+ L +LYL  NKL G IP EIGNL  L  L L+ + + G +PA IFN+S+
Sbjct: 305 GGIPKALGSLSDLEELYLGYNKLTGGIPREIGNLSNLNILHLASSGINGPIPAEIFNISS 364

Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVST 388
           L  +   NNSLSG LP      LPNL+ L+L +    G++ T
Sbjct: 365 LHRIDFTNNSLSGGLPMDICKHLPNLQGLYLSQNHLSGQLPT 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.757	0.300	0.384	8.6e-69
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.715	0.321	0.371	7.1e-65
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.751	0.297	0.370	9.5e-64
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.707	0.349	0.380	1e-63
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.761	0.346	0.367	2.8e-63
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.749	0.331	0.379	8e-63
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.810	0.397	0.322	1.2e-61
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.715	0.366	0.371	2.5e-61
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.771	0.339	0.340	3.8e-61
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.640	0.313	0.361	4.7e-61

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 8.6e-69, Sum P(2) = 8.6e-69
 Identities = 147/382 (38%), Positives = 210/382 (54%)

Query:    10 ITTDQQALL-VLKAHVTDDPTNFLAKNWNTSS-SFCYWTGVTCDVRS-HRVAALNISGLN 66
             I  D Q LL V K+ VT+   +   + WN+ + ++C WTGVTCD     RV ALN++GL 
Sbjct:    23 INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLG 82

Query:    67 LTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQ 126
             LTG+I        +L  LDLS N   G IP+++ N++SL S++  +N L GE+P      
Sbjct:    83 LTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQL-GS 141

Query:   127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
             + N+ SL +  N   G IP TL +   L+ L+L+S   +G IP ++G L ++  L L+ N
Sbjct:   142 LVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDN 201

Query:   187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGN 246
              L+G IP ELGN ++L +     N L GTIP                   TG IPS +G 
Sbjct:   202 YLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGE 261

Query:   247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
             +S LQ L L  NQL G +P ++ + L +LQTL L  N+ +G IP+E  N+++L DL L  
Sbjct:   262 MSQLQYLSLMANQLQGLIPKSLAD-LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLAN 320

Query:   307 NKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSA 365
             N L G +P  I  N   LE L+LS  +L G +P  +    +L  L L NNSL+GS+P + 
Sbjct:   321 NHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEAL 380

Query:   366 DVPLPNLEELFLWEYGREGRVS 387
                L  L +L+L     EG +S
Sbjct:   381 -FELVELTDLYLHNNTLEGTLS 401

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 7.1e-65, Sum P(2) = 7.1e-65
 Identities = 134/361 (37%), Positives = 191/361 (52%)

Query:     5 ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSF-CYWTGVTCDVRSH--RVAALN 61
             + TT +  + Q LL +K+   D   N   +NWN++ S  C WTGV C   S    V +LN
Sbjct:    22 SETTGLNLEGQYLLEIKSKFVDAKQNL--RNWNSNDSVPCGWTGVMCSNYSSDPEVLSLN 79

Query:    62 ISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPP 121
             +S + L+G +   +  L  L+ LDLS+N   G IP  I N SSL  +  NNN   GE+P 
Sbjct:    80 LSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPV 139

Query:   122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRL 181
                 ++ +LE+L +  N   G +P  + +   L +L   SN  SG +P+ IGNL +LT  
Sbjct:   140 EI-GKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSF 198

Query:   182 NLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIP 241
                QN + G +P E+G    L ML L  N L+G +P                  F+G IP
Sbjct:   199 RAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIP 258

Query:   242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD 301
               I N +SL+ L L  NQL G +P  +G+ L SL+ L LY N  +G IP+EIGNL+   +
Sbjct:   259 REISNCTSLETLALYKNQLVGPIPKELGD-LQSLEFLYLYRNGLNGTIPREIGNLSYAIE 317

Query:   302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
             +   +N L G+IP E+GN+  LE L L  N+L G +P  +  L  L  L L  N+L+G +
Sbjct:   318 IDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPI 377

Query:   362 P 362
             P
Sbjct:   378 P 378

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 9.5e-64, Sum P(2) = 9.5e-64
 Identities = 141/381 (37%), Positives = 207/381 (54%)

Query:    13 DQQALLVLK-AHVTDDPTNFLAKNWNTSS-SFCYWTGVTCDVRSHRVAALNISGLNLTGT 70
             D Q LL LK + +T+     + ++WN+ S S+C WTGVTC  R   +  LN+SGL LTG+
Sbjct:    29 DLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCGGRE--IIGLNLSGLGLTGS 86

Query:    71 IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLL-SIYFNNNTLFGELPPNFCNQMSN 129
             I   +   ++L  +DLS N   G IP+++ N+SS L S++  +N L G++P      + N
Sbjct:    87 ISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQL-GSLVN 145

Query:   130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ 189
             L+SL L  N  +G IP T  +   L+ L+L+S   +G IP   G L +L  L L+ N+L+
Sbjct:   146 LKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELE 205

Query:   190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
             G IP E+GN   L +     N L G++P                  F+G IPS +G+L S
Sbjct:   206 GPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVS 265

Query:   250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
             +Q L L  NQL G +P  +   L +LQTL L  N+ +G I +E   + +L  L L +N+L
Sbjct:   266 IQYLNLIGNQLQGLIPKRL-TELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRL 324

Query:   310 QGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVP 368
              G +P  I  N   L+ L LS  +L G +PA I N  +L  L L NN+L+G +P S    
Sbjct:   325 SGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSL-FQ 383

Query:   369 LPNLEELFLWEYGREGRVSTN 389
             L  L  L+L     EG +S++
Sbjct:   384 LVELTNLYLNNNSLEGTLSSS 404

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 1.0e-63, Sum P(2) = 1.0e-63
 Identities = 134/352 (38%), Positives = 184/352 (52%)

Query:    12 TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
             T+  ALL LK+  T D  + L  +WN S++FC WTGVTCDV    V +L++SGLNL+GT+
Sbjct:    26 TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query:    72 PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
              S++A+L  LQ L L+ N   G IP  I N+  L  +  +NN   G  P    + + NL 
Sbjct:    86 SSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR 145

Query:   132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
              L L  N   G +P +L++  QLR L L  NYFSG IP   G    L  L +  N+L G+
Sbjct:   146 VLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGK 205

Query:   192 IPEELGNLAELEMLWL-QNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSSL 250
             IP E+GNL  L  L++   N+    +P                   TG IP  IG L  L
Sbjct:   206 IPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKL 265

Query:   251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
               L+L  N  +G +   +G  + SL+++ L  N F+G IP     L  LT L L +NKL 
Sbjct:   266 DTLFLQVNAFTGTITQELGL-ISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLY 324

Query:   311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
             G IP  IG + +LE L L  N   G +P  +     L+ L L +N L+G+LP
Sbjct:   325 GAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLP 376

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
 Identities = 142/386 (36%), Positives = 208/386 (53%)

Query:     6 NTTSITTDQQALLVLKAHVTDDPTNFLAKNW--NTSSSF-CY--WTGVTCDVRSHRVAAL 60
             + +S+ +D  ALL L  H    P   +A  W  NTS +  C   W GV CD+  + V  L
Sbjct:    23 SVSSLNSDGLALLSLLKHFDKVPLE-VASTWKENTSETTPCNNNWFGVICDLSGNVVETL 81

Query:    61 NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120
             N+S   L+G + SE+  L SL  LDLS N F G +PS++ N +SL  +  +NN   GE+P
Sbjct:    82 NLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVP 141

Query:   121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR 180
               F   + NL  L+L  N   G IP+++    +L +L +S N  SGTIP+ +GN +KL  
Sbjct:   142 DIF-GSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEY 200

Query:   181 LNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGII 240
             L L  NKL G +P  L  L  L  L++ NNSL G +                   F G +
Sbjct:   201 LALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGV 260

Query:   241 PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLT 300
             P  IGN SSL  L +    L+G +P+++G  L  +  + L  N  SG IP+E+GN + L 
Sbjct:   261 PPEIGNCSSLHSLVMVKCNLTGTIPSSMGM-LRKVSVIDLSDNRLSGNIPQELGNCSSLE 319

Query:   301 DLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360
              L L+ N+LQG+IP  +  L+KL+ L L  NKL G +P  I+ + +L  + ++NN+L+G 
Sbjct:   320 TLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGE 379

Query:   361 LPSSADVPLPNLEELFLWEYGREGRV 386
             LP      L +L++L L+  G  G +
Sbjct:   380 LPVEV-TQLKHLKKLTLFNNGFYGDI 404

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 8.0e-63, Sum P(2) = 8.0e-63
 Identities = 144/379 (37%), Positives = 211/379 (55%)

Query:     4 SANTTSITTDQQALLVLKAHVTDDP--TNFLAK-NWNTSSSFCYWTGVTCDVRSHRVAAL 60
             S + ++   +  ALL  K+  T+    ++++   N NTS S   W GV+C+ R   +  L
Sbjct:    24 SISASATIAEANALLKWKSTFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEEL 82

Query:    61 NISGLNLTGTIPS-ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
             N++   + GT       +LS+L  +DLS N   G+IP    N+S L+    + N L GE+
Sbjct:    83 NLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEI 142

Query:   120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
              P+  N + NL  L+L  N     IPS L + + + +L+LS N  +G+IP  +GNL  L 
Sbjct:   143 SPSLGN-LKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLM 201

Query:   180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGI 239
              L L +N L G IP ELGN+  +  L L  N LTG+IP                   TG+
Sbjct:   202 VLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGV 261

Query:   240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
             IP  IGN+ S+  L LS N+L+G +P+++GN L +L  LSL+ N  +G IP ++GN+  +
Sbjct:   262 IPPEIGNMESMTNLALSQNKLTGSIPSSLGN-LKNLTLLSLFQNYLTGGIPPKLGNIESM 320

Query:   300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
              DL L  NKL G IP  +GNL+ L  L L  N L GV+P  + N+ ++I LQL+NN L+G
Sbjct:   321 IDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTG 380

Query:   360 SLPSSADVPLPNLEELFLW 378
             S+PSS    L NL  L+L+
Sbjct:   381 SIPSSFG-NLKNLTYLYLY 398

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
 Identities = 135/418 (32%), Positives = 205/418 (49%)

Query:    12 TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTI 71
             TD+QALL  K+ V++D    L+ +WN S   C W GVTC  ++ RV  L +  L L G I
Sbjct:    24 TDRQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82

Query:    72 PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
                + NLS L +LDL  N+F G+IP  +  +S L  +    N L G +P    N  S L 
Sbjct:    83 SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYN-CSRLL 141

Query:   132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
             +L L  N   G +PS L S   L +L+L  N   G +P  +GNLT L +L L  N L+GE
Sbjct:   142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query:   192 IPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNL-SSL 250
             IP ++  L ++  L L  N+ +G  P                  F+G +   +G L  +L
Sbjct:   202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query:   251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
                 +  N  +G +P  + +N+ +L+ L +  N+ +G+IP   GN+  L  L+L  N L 
Sbjct:   262 LSFNMGGNYFTGSIPTTL-SNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSLG 319

Query:   311 GKIPHEIG------NLRKLEWLMLSHNKLVGVVPAPIFNLST-LISLQLHNNSLSGSLPS 363
                  ++       N  +LE L +  N+L G +P  I NLS  L++L L    +SGS+P 
Sbjct:   320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379

Query:   364 SADVPLPNLEELFLWEYGREGRVSTN-GDIYNFGIMIMETFTAKKPTD-EIFNGEMTL 419
                  L NL++L L +    G + T+ G + N  +  +  F+ +       F G MT+
Sbjct:   380 DIG-NLINLQKLILDQNMLSGPLPTSLGKLLN--LRYLSLFSNRLSGGIPAFIGNMTM 434

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
 Identities = 134/361 (37%), Positives = 197/361 (54%)

Query:     6 NTTSITTDQQALLVLKAHVTDDPTNFLAKNWNT--SSSFCYWTGVTCDVRSHRVAALNIS 63
             + + +  + +AL+ +KA  ++   N L  +W+   +  FC W GV CD  S  V +LN+S
Sbjct:    24 SVSPMNNEGKALMAIKASFSN-VANMLL-DWDDVHNHDFCSWRGVFCDNVSLNVVSLNLS 81

Query:    64 GLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNF 123
              LNL G I S L +L +LQ++DL  N   G IP  I N  SL  + F+ N LFG++P + 
Sbjct:    82 NLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFSI 141

Query:   124 CNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
              +++  LE L LK N   G IP+TL+    L+ L L+ N  +G IP+ +     L  L L
Sbjct:   142 -SKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGL 200

Query:   184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSS 243
             R N L G +  ++  L  L    ++ N+LTGTIP                   TG+IP +
Sbjct:   201 RGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYN 260

Query:   244 IGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
             IG L  +  L L  N+L+G +P  IG  + +L  L L  N+ +G IP  +GNL+    LY
Sbjct:   261 IGFLQ-VATLSLQGNKLTGRIPEVIGL-MQALAVLDLSDNELTGPIPPILGNLSFTGKLY 318

Query:   304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
             L  NKL G+IP E+GN+ +L +L L+ N+LVG +P  +  L  L  L L NN+L G +PS
Sbjct:   319 LHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPS 378

Query:   364 S 364
             +
Sbjct:   379 N 379

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 3.8e-61, Sum P(2) = 3.8e-61
 Identities = 134/394 (34%), Positives = 198/394 (50%)

Query:     9 SITTDQQALLVLKAHVTDDPTNFLAKNWN-TSSSFCYWTGVTCDVRSHR-------VAAL 60
             S+ +D Q LL LK     D  N L  NWN    + C W GV C  +          V +L
Sbjct:    32 SLNSDGQFLLELKNRGFQDSLNRL-HNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSL 90

Query:    61 NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120
             ++S +NL+G +   +  L +L  L+L++N   G IP  I N S L  ++ NNN   G +P
Sbjct:    91 DLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIP 150

Query:   121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR 180
                 N++S L S  +  N   G +P  +     L EL   +N  +G +P+ +GNL KLT 
Sbjct:   151 VEI-NKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209

Query:   181 LNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGII 240
                 QN   G IP E+G    L++L L  N ++G +P                  F+G I
Sbjct:   210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269

Query:   241 PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLT 300
             P  IGNL+SL+ L L  N L G +P+ IGN + SL+ L LY N  +G IPKE+G L+K+ 
Sbjct:   270 PKDIGNLTSLETLALYGNSLVGPIPSEIGN-MKSLKKLYLYQNQLNGTIPKELGKLSKVM 328

Query:   301 DLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS 360
             ++   +N L G+IP E+  + +L  L L  NKL G++P  +  L  L  L L  NSL+G 
Sbjct:   329 EIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGP 388

Query:   361 LPSSADVPLPNLEELFLWEYGREGRVSTNGDIYN 394
             +P      L ++ +L L+     G +     +Y+
Sbjct:   389 IPPGFQ-NLTSMRQLQLFHNSLSGVIPQGLGLYS 421

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 4.7e-61, Sum P(2) = 4.7e-61
 Identities = 118/326 (36%), Positives = 167/326 (51%)

Query:    59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
             +L  +  N+ G +P ELA LS +  L LS N F+G  P +I+N+S+L  ++   +   G 
Sbjct:   190 SLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGS 249

Query:   119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
             L P+F N + N+  L L  N   G IP+TLS+   L++  ++ N  +G I    G +  L
Sbjct:   250 LKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSL 309

Query:   179 TRLNLRQNKLQG------EIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXX 232
               L+L +N L        E  + L N   L++L +    L G +P               
Sbjct:   310 QYLDLSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNL 369

Query:   233 XXX-FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291
                 F G IP  IGNL  LQ+L L  N L+G LP ++G  L  L  LSLY N  SG IP 
Sbjct:   370 IGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLL-RLGLLSLYSNRMSGEIPS 428

Query:   292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
              IGNLT+L  LYL  N  +G +P  +G    +  L + +NKL G +P  I  + TL++L 
Sbjct:   429 FIGNLTQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLS 488

Query:   352 LHNNSLSGSLPSSADVPLPNLEELFL 377
             +  NSLSGSLP+     L NL +L L
Sbjct:   489 MEGNSLSGSLPNDIG-SLQNLVKLSL 513

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018756001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1089 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-68
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-38
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  236 bits (603), Expect = 2e-68
 Identities = 141/349 (40%), Positives = 201/349 (57%), Gaps = 8/349 (2%)

Query: 17  LLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELA 76
           LL  K+ + +DP  +L+ NWN+S+  C W G+TC+  S RV ++++SG N++G I S + 
Sbjct: 34  LLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIF 90

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMS-SLLSIYFNNNTLFGELPPNFCNQMSNLESLFL 135
            L  +Q ++LS N   G IP  IF  S SL  +  +NN   G +P      + NLE+L L
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS---IPNLETLDL 147

Query: 136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE 195
             NM  G+IP+ + S   L+ L L  N   G IP  + NLT L  L L  N+L G+IP E
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 196 LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYL 255
           LG +  L+ ++L  N+L+G IP  I  L+SL +LDL  NN TG IPSS+GNL +LQ L+L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 256 SDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
             N+LSG +P +I  +L  L +L L  N  SG IP+ +  L  L  L+L  N   GKIP 
Sbjct: 268 YQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 316 EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
            + +L +L+ L L  NK  G +P  +   + L  L L  N+L+G +P  
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  200 bits (510), Expect = 6e-56
 Identities = 132/334 (39%), Positives = 184/334 (55%), Gaps = 31/334 (9%)

Query: 66  NLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN 125
           NLTG IPS L NL +LQ L L  N   G IP SIF++  L+S+  ++N+L GE+P     
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVI 305

Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLR------------------------ELSLSS 161
           Q+ NLE L L  N F GKIP  L+S  +L+                         L LS+
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 162 NYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221
           N  +G IP+ + +   L +L L  N L+GEIP+ LG    L  + LQ+NS +G +PS   
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
            L  +  LD+S NN  G I S   ++ SLQ L L+ N+  G LP + G+    L+ L L 
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK--RLENLDLS 483

Query: 282 VNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI 341
            N FSGA+P+++G+L++L  L L +NKL G+IP E+ + +KL  L LSHN+L G +PA  
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 342 FNLSTLISLQLHNNSLSGSLPSSADVPLPNLEEL 375
             +  L  L L  N LSG +P +    L N+E L
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKN----LGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  174 bits (442), Expect = 9e-47
 Identities = 113/306 (36%), Positives = 162/306 (52%), Gaps = 3/306 (0%)

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           +L++S  +L+G IP  +  L +L+ L L  N F G IP ++ ++  L  +   +N   GE
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
           +P N     +NL  L L  N   G+IP  L S   L +L L SN   G IPK +G    L
Sbjct: 348 IPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
            R+ L+ N   GE+P E   L  +  L + NN+L G I S  + + SL  L L+ N F G
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
            +P S G+   L+ L LS NQ SG +P  +G+ L  L  L L  N  SG IP E+ +  K
Sbjct: 467 GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
           L  L L  N+L G+IP     +  L  L LS N+L G +P  + N+ +L+ + + +N L 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 359 GSLPSS 364
           GSLPS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  169 bits (429), Expect = 4e-45
 Identities = 116/327 (35%), Positives = 166/327 (50%), Gaps = 25/327 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++   L G IP EL  + SL+ + L +N   G IP  I  ++SL  +    N L G +
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
           P +  N + NL+ LFL  N   G IP ++ S ++L  L LS N  SG IP+ +  L  L 
Sbjct: 253 PSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L+L  N   G+IP  L +L  L++L L +N  +G IP ++   ++L  LDLS NN TG 
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
           IP  + +  +L KL L  N L GE+P ++G    SL+ + L  N FSG +P E   L  +
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

Query: 300 TDLYLDQNKLQGKIPHE-----------------IGNL------RKLEWLMLSHNKLVGV 336
             L +  N LQG+I                     G L      ++LE L LS N+  G 
Sbjct: 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA 490

Query: 337 VPAPIFNLSTLISLQLHNNSLSGSLPS 363
           VP  + +LS L+ L+L  N LSG +P 
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  149 bits (379), Expect = 1e-38
 Identities = 105/323 (32%), Positives = 155/323 (47%), Gaps = 27/323 (8%)

Query: 56  RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
           R+  L +     +G IP  L   ++L  LDLS N   G IP  + +  +L  +   +N+L
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL 175
            GE+P                          +L +C+ LR + L  N FSG +P E   L
Sbjct: 393 EGEIPK-------------------------SLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
             +  L++  N LQG I     ++  L+ML L  N   G +P S F    L NLDLS N 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQ 486

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
           F+G +P  +G+LS L +L LS+N+LSGE+P  + ++   L +L L  N  SG IP     
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
           +  L+ L L QN+L G+IP  +GN+  L  + +SHN L G +P+    L+   S    N 
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605

Query: 356 SLSGSLPSSADVPLPNLEELFLW 378
            L G   +S   P   + +   W
Sbjct: 606 DLCGGDTTSGLPPCKRVRKTPSW 628

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 42/92 (45%), Positives = 58/92 (63%)

Query: 181 LNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGII 240
           L L    L+G IP ++  L  L+ + L  NS+ G IP S+ S++SL  LDLS N+F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 241 PSSIGNLSSLQKLYLSDNQLSGELPANIGNNL 272
           P S+G L+SL+ L L+ N LSG +PA +G  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 231 LSLNN--FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           L L+N    G IP+ I  L  LQ + LS N + G +P ++G+ + SL+ L L  N F+G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIG 318
           IP+ +G LT L  L L+ N L G++P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 32/79 (40%), Positives = 48/79 (60%)

Query: 142 GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAE 201
           G IP+ +S  + L+ ++LS N   G IP  +G++T L  L+L  N   G IPE LG L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 202 LEMLWLQNNSLTGTIPSSI 220
           L +L L  NSL+G +P+++
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 30/147 (20%)

Query: 45  WTGVTCDVRSHR----VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF 100
           W+G  C   S +    +  L +    L G IP++++ L  LQ+++LS N   G+IP S+ 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160
           +++S                         LE L L YN F+G IP +L     LR L+L+
Sbjct: 464 SITS-------------------------LEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 161 SNYFSGTIPKEIGN-LTKLTRLNLRQN 186
            N  SG +P  +G  L      N   N
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 49/167 (29%)

Query: 53  RSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNN 112
            S R+  L++S    +G +P +L +LS L  L LS                         
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS------------------------- 507

Query: 113 NTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI 172
                                    N   G+IP  LSSCK+L  L LS N  SG IP   
Sbjct: 508 ------------------------ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 173 GNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSS 219
             +  L++L+L QN+L GEIP+ LGN+  L  + + +N L G++PS+
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK 170
           +N  L G +P N  +++ +L+S+ L  N   G IP +L S   L  L LS N F+G+IP+
Sbjct: 426 DNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPEELG 197
            +G LT L  LNL  N L G +P  LG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
           G IP +I  L  L  + L  N ++G IP  +G++  LE L LS+N   G +P  +  L++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 347 LISLQLHNNSLSGSLPSS 364
           L  L L+ NSLSG +P++
Sbjct: 492 LRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 10/216 (4%)

Query: 164 FSGTIPKEIGNLTKLTRLNLRQNKLQG--EIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221
            S T+     +L++L  L+L         +  E L NL  L  L L  N L   I S + 
Sbjct: 55  SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELL 113

Query: 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
            L++L +LDL  NN T I P      S+L++L LSDN++   LP+ +  NLP+L+ L L 
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171

Query: 282 VNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI 341
            ND S  +PK + NL+ L +L L  NK+   +P EI  L  LE L LS+N ++  + + +
Sbjct: 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL 228

Query: 342 FNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            NL  L  L+L NN L       +   L NLE L L
Sbjct: 229 SNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDL 262

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 257 DNQ-LSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
           DNQ L G +P +I + L  LQ+++L  N   G IP  +G++T L  L L  N   G IP 
Sbjct: 426 DNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 316 EIGNLRKLEWLMLSHNKLVGVVPA 339
            +G L  L  L L+ N L G VPA
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 95/315 (30%), Positives = 136/315 (43%), Gaps = 41/315 (13%)

Query: 53  RSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNN 112
            +    ALN+S   L   +PS L+ L SL  L  S      S      N+ +LL +   +
Sbjct: 45  VAVNRLALNLSSNTLL-LLPSSLSRLLSLDLLSPSGI----SSLDGSENLLNLLPLPSLD 99

Query: 113 NTLFGELP-PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKE 171
             L       +   +++NL SL L  N      P        L+EL LS N    ++P  
Sbjct: 100 LNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP 158

Query: 172 IGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL 231
           + NL  L  L+L  N L  ++P+ L NL+ L  L L  N ++  +P  I  LS+L  LDL
Sbjct: 159 LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216

Query: 232 SLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291
           S NN    + SS+ NL +L  L LS+N+L  +LP +IGN L +L+TL L           
Sbjct: 217 S-NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGN-LSNLETLDL----------- 262

Query: 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI---FNLSTLI 348
                          +  Q      +G+L  L  L LS N L   +P        L  L+
Sbjct: 263 ---------------SNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Query: 349 SLQLHNNSLSGSLPS 363
           +L L   +L   L S
Sbjct: 308 NLLLTLKALELKLNS 322

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 12 TDQQALLVLKAHVTDDPTNFLAKNWNTSSS-FCYWTGVTCD 51
           D+ ALL  K+ +  DP+  L+ +WN SSS  C WTGVTCD
Sbjct: 3  DDRDALLAFKSSLNGDPSGALS-SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query: 202 LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
           L+ L L NN LT     +   L +L  LDLS NN T I P +   L SL+ L LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
           L LD   L+G IP++I  LR L+ + LS N + G +P  + ++++L  L L  NS +GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 362 PSS 364
           P S
Sbjct: 483 PES 485

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 70  TIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN 129
           ++PS L NL +L+ LDLSFN     +P  + N+S+L ++  + N +     P     +S 
Sbjct: 154 SLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSA 210

Query: 130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ 189
           LE L L  N    ++ S+LS+ K L  L LS+N     +P+ IGNL+ L  L+L  N++ 
Sbjct: 211 LEELDLSNN-SIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQI- 267

Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPSSI---FSLSSLLNLDLSLNNFTGIIPSSIGN 246
                 LG+L  L  L L  NSL+  +P        L  LLNL L+L      + S + N
Sbjct: 268 -SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLN 326

Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQ 276
            + L     S  +    L +          
Sbjct: 327 NNILSNGETSSPEALSILESLNNLWTLDNA 356

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
            L  L L  N+L          L  L+ L LS N L  + P     L +L SL L  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
           +L +LDLS N  T I   +   L +L+ L LS N L+  +     + LPSL++L L  N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 285 F 285
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 11/207 (5%)

Query: 175 LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234
           LT L  ++LR +K   EIP+ L     LE L L + S    +PSSI  L+ L +LD+S  
Sbjct: 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
               I+P+ I NL SL +L LS        P +I  N+  L      + +F   +  E  
Sbjct: 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIEEFPSNLRLE-- 747

Query: 295 NLTKLTDLYLDQNKLQGKI----PHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISL 350
           NL +L    +   KL  ++    P        L  L LS    +  +P+ I NL  L  L
Sbjct: 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807

Query: 351 QLHNNSLSGSLPSSADVPLPNLEELFL 377
           ++ N     +LP+   + L +LE L L
Sbjct: 808 EIENCINLETLPTG--INLESLESLDL 832

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNY 163
           +L S+  +NN L   +P      + NL+ L L  N      P   S    LR L LS N 
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 164 F 164
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 18/60 (30%), Positives = 23/60 (38%)

Query: 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188
           NL+SL L  N               L+ L LS N  +   P+    L  L  L+L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 19/60 (31%), Positives = 24/60 (40%)

Query: 153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL 212
            L+ L LS+N  +         L  L  L+L  N L    PE    L  L  L L  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 38/261 (14%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
           +NLE+L L       ++PS++    +L +L +S       +P  I NL  L RLNL    
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL----SLNNFTGIIPSS 243
                P+   N++ L++    + +     PS++  L +L  L L    S   +  + P +
Sbjct: 716 RLKSFPDISTNISWLDL----DETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT 770

Query: 244 --IGNLS-SLQKLYLSDNQLSGELPANIGN----------NLPSLQTL-------SLYVN 283
             +  LS SL +L+LSD     ELP++I N          N  +L+TL       SL   
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESL 830

Query: 284 DFSGAIP-KEIGNL-TKLTDLYLDQNKLQGKIPHEIGNLRKLEWL-MLSHNKLVGVVPAP 340
           D SG    +   ++ T ++DL L +  ++ ++P  I     L +L M   N L  V    
Sbjct: 831 DLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL-- 887

Query: 341 IFNLSTLISLQLHNNSLSGSL 361
             N+S L  L+  + S  G+L
Sbjct: 888 --NISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
PLN03150	623	hypothetical protein; Provisional	99.61
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.56
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
PLN03150	623	hypothetical protein; Provisional	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.83
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.27
KOG0192	362	consensus Tyrosine kinase specific for activated (	98.27
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.2
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
KOG4341	483	consensus F-box protein containing LRR [General fu	98.17
PHA02988	283	hypothetical protein; Provisional	98.16
KOG4341	483	consensus F-box protein containing LRR [General fu	98.15
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	98.15
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	98.08
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.03
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.03
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	98.01
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	97.98
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	97.98
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	97.98
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	97.98
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	97.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	97.97
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	97.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	97.96
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	97.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	97.93
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	97.92
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	97.89
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	97.89
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	97.88
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	97.88
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	97.88
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	97.87
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	97.86
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	97.86
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	97.86
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	97.86
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	97.85
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	97.84
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	97.84
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	97.83
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	97.83
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	97.83
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	97.81
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	97.8
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	97.8
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	97.79
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	97.79
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	97.74
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	97.74
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	97.74
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	97.73
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	97.73
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	97.72
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	97.72
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	97.72
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.71
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	97.71
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	97.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.7
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	97.7
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	97.69
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.69
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	97.69
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	97.67
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	97.66
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	97.66
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	97.66
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	97.65
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	97.65
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	97.65
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	97.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	97.64
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	97.64
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	97.63
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	97.62
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.61
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	97.59
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	97.59
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	97.58
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	97.56
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	97.56
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	97.55
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	97.55
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	97.55
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	97.55
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.55
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	97.53
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	97.53
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	97.53
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	97.52
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	97.51
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	97.51
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	97.51
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	97.51
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	97.5
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	97.49
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	97.49
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	97.49
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	97.47
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	97.46
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	97.44
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	97.43
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	97.43
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	97.41
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	97.4
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	97.39
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	97.39
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	97.38
PHA02882	294	putative serine/threonine kinase; Provisional	97.36
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	97.36
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	97.36
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	97.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.36
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	97.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.33
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	97.31
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	97.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.29
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	97.28
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	97.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.27
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	97.26
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	97.26
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	97.25
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	97.25
KOG4721	904	consensus Serine/threonine protein kinase, contain	97.25
PTZ00283	496	serine/threonine protein kinase; Provisional	97.24
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	97.23
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	97.23
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	97.23
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	97.22
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	97.22
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	97.21
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.19
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	97.19
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	97.18
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	97.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	97.16
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	97.16
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	97.15
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	97.15
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	97.14
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	97.13
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	97.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	97.11
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	97.11
KOG0581	364	consensus Mitogen-activated protein kinase kinase	97.11
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	97.09
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	97.09
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	97.08
PLN00034	353	mitogen-activated protein kinase kinase; Provision	97.08
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	97.08
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	97.07
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	97.07
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	97.07
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	97.06
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.05
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	97.05
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	97.03
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	97.02
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	97.02
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	97.02
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	97.01
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	97.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.01
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	97.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	96.99
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	96.99
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	96.99
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	96.99
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	96.99
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	96.98
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	96.98
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	96.97
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	96.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	96.95
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	96.95
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	96.94
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	96.94
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	96.93
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	96.92
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	96.91
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	96.91
PLN00181	793	protein SPA1-RELATED; Provisional	96.9
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	96.9
KOG0198	313	consensus MEKK and related serine/threonine protei	96.86
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	96.85
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	96.85
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	96.84
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	96.83
PLN00009	294	cyclin-dependent kinase A; Provisional	96.82
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	96.81
KOG0596	677	consensus Dual specificity; serine/threonine and t	96.81
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	96.79
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	96.79
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	96.79
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	96.79
PTZ00267	478	NIMA-related protein kinase; Provisional	96.78
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	96.78
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	96.77
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	96.76
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	96.76
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	96.75
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	96.75
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	96.73
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	96.73
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	96.7
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	96.7
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	96.7
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	96.68
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	96.66
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	96.65
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	96.65
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	96.63
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	96.61
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	96.61
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	96.61
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	96.6
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	96.59
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	96.58
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	96.56
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	96.56
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	96.55
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	96.55
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	96.55
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	96.53
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.52
PTZ00266	1021	NIMA-related protein kinase; Provisional	96.52
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	96.48
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	96.47
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	96.46
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.46
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	96.44
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	96.43
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	96.42
PHA03207	392	serine/threonine kinase US3; Provisional	96.41
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	96.39
PTZ00284	467	protein kinase; Provisional	96.37
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	96.36
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	96.36
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	96.36
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	96.36
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	96.36
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	96.35
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	96.33
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	96.29
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	96.29
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	96.28
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	96.28
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	96.25
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	96.24
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	96.22
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	96.22
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	96.21
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	96.2
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	96.18
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	96.18
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	96.16
KOG4308	478	consensus LRR-containing protein [Function unknown	96.16
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	96.15
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	96.05
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	96.04
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	96.03
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	96.02
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	96.02
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	96.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	95.99
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	95.99
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	95.99
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	95.95
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	95.94
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	95.93
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	95.92
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	95.91
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	95.89
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	95.88
PTZ00024	335	cyclin-dependent protein kinase; Provisional	95.86
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	95.85
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	95.81
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	95.81
KOG0582	516	consensus Ste20-like serine/threonine protein kina	95.8
PHA03212	391	serine/threonine kinase US3; Provisional	95.78
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	95.76
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	95.75
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	95.71
PHA03209	357	serine/threonine kinase US3; Provisional	95.66
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	95.65
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	95.64
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	95.64
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	95.63
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	95.63
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	95.61
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	95.61
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	95.61
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	95.6
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	95.59
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	95.53
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	95.52
PTZ00263	329	protein kinase A catalytic subunit; Provisional	95.51
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	95.47
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	95.47
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	95.47
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	95.46
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	95.46
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	95.46
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	95.42
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	95.41
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	95.38
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	95.37
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	95.36
PTZ00036	440	glycogen synthase kinase; Provisional	95.32
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	95.31
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	95.21
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	95.19
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	95.12
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	95.11
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	95.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	94.97
KOG4308	478	consensus LRR-containing protein [Function unknown	94.91
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	94.89
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	94.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.56
PHA03211	461	serine/threonine kinase US3; Provisional	94.44
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	94.36
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	94.36
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	94.34
PHA03210	501	serine/threonine kinase US3; Provisional	94.33
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	94.33
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	94.27
KOG0578	550	consensus p21-activated serine/threonine protein k	94.23
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	94.1
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	94.1
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	94.09
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	94.05
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	94.02
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	94.02
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	93.87
KOG0201	467	consensus Serine/threonine protein kinase [Signal	93.83
KOG1989	738	consensus ARK protein kinase family [Signal transd	93.53
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	93.49
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	93.41
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	93.24
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	93.2
KOG0583	370	consensus Serine/threonine protein kinase [Signal	92.99
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	92.92
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	92.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	92.65
KOG0584	632	consensus Serine/threonine protein kinase [General	92.42
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	91.94
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	90.78
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	90.71
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	90.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.54
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	90.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.46
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	87.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.56
KOG0575	592	consensus Polo-like serine/threonine protein kinas	86.97
KOG0589	426	consensus Serine/threonine protein kinase [General	86.69
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	85.87
PLN03224	507	probable serine/threonine protein kinase; Provisio	85.8
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	85.67
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	83.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.83
smart00370	26	LRR Leucine-rich repeats, outliers.	81.83
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	81.54
KOG1290	590	consensus Serine/threonine protein kinase [Signal	81.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.41
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	81.36
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	81.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.5e-51  Score=454.44  Aligned_cols=324  Identities=42%  Similarity=0.709  Sum_probs=219.9

Q ss_pred             ChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCC
Q 011044           10 ITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFN   89 (495)
Q Consensus        10 ~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n   89 (495)
                      .++|+.||++||+.+ .+|.+.+. +|+...++|.|.|++|+. ..+|+.|+|+++.+++.++..+..+++|++|+|++|
T Consensus        27 ~~~~~~~l~~~~~~~-~~~~~~~~-~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhC-CCCcccCC-CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            557899999999999 57877776 998878999999999985 468999999999999999999999999999999999


Q ss_pred             cCCccCCcccc-CCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCcccc
Q 011044           90 WFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI  168 (495)
Q Consensus        90 ~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  168 (495)
                      .+.+.+|..+. ++++|++|++++|.+.+.+|..   .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence            99988887655 7888888888888777666642   2556666666666665555555666666666666666555555


Q ss_pred             CccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCccccccc
Q 011044          169 PKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS  248 (495)
Q Consensus       169 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~  248 (495)
                      |..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++.++
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            55555555566666555555555555555555555555555555555555555555555555555555544444444444


Q ss_pred             cc------------------------ceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeec
Q 011044          249 SL------------------------QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL  304 (495)
Q Consensus       249 ~L------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  304 (495)
                      +|                        +.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            44                        4445544444444444333 4555555555555555555555666666666666


Q ss_pred             ccccccccCCccccCCCcCCEEeCcCCcccccCCcC
Q 011044          305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP  340 (495)
Q Consensus       305 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  340 (495)
                      ++|.+.+.+|..++.+++|+.|++++|++.+.+|..
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            666666666666777777777777777776666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-36  Score=337.42  Aligned_cols=304  Identities=37%  Similarity=0.590  Sum_probs=214.6

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L  217 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWI  217 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEE
Confidence            356777777777777777777888888888888888877777777788888888888888877777777665 7788888


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            88888777777777777788888888887777777777777777778877777777777777777777777777777777


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      +.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..+
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhH
Confidence            77777777777777777777777777777677777777777777777766666555 56677777777776666666555


Q ss_pred             cCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCce
Q 011044          294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG  359 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  359 (495)
                      ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+
T Consensus       377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence            555555555555555555555555555555555555555555445444444444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=8.1e-33  Score=264.92  Aligned_cols=326  Identities=23%  Similarity=0.232  Sum_probs=240.6

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      +...+.|++++|.+...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-...+.. ++.|+.|
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~-l~alrsl  154 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA-LPALRSL  154 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh-Hhhhhhh
Confidence            456788999999999888888999999999999999997 78876666778999999999997555555555 8999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ||+.|.++..-...|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|++++.|+.|+|..|.+.
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            99999988555556777788999999999998777788888889999999999998776778888999999999998886


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      -.--..|.++++|+.|.+..|.+.......|..+.++++|+++.|+++..-..+++ ++..|+.|++++|.+...-++..
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchh
Confidence            33345667778888888888877766666677777777777777777643334444 66677777777776665555555


Q ss_pred             cCCCCCCeeecccccccccCCcc------------------------ccCCCcCCEEeCcCCcccccC---CcCccCCCC
Q 011044          294 GNLTKLTDLYLDQNKLQGKIPHE------------------------IGNLRKLEWLMLSHNKLVGVV---PAPIFNLST  346 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~~~~~~~------------------------l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~  346 (495)
                      .-.++|++|+|++|+|+..-+..                        |..+++|+.|+|++|.+...+   ...|.++++
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            66666666666666666444444                        444555555555555544322   223455666


Q ss_pred             CcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          347 LISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       347 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      |+.|.+.+|++. .+|...+..++.|+.|++.+|+..
T Consensus       394 LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  394 LRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             hhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence            666666666665 666666666777777777766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=4.1e-33  Score=266.95  Aligned_cols=319  Identities=24%  Similarity=0.271  Sum_probs=254.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +++++|+|.+|.|+..-...+..++.||+|||+.|.|+..--..|..-.++++|+|++|.|+. +..+-+..+.+|.+|.
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLK  203 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeee
Confidence            467777777777776666677777778888888777774444556666778888888887753 3333334477788888


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      |+.|+++...+..|+++++|+.|+|..|.+.-.---.|.++++|+.|.|..|.+...-...|..+.+++.|+|+.|++..
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            88888875555677778888888888887763334457778888888888888776666678888899999999999987


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                      .-..++.+++.|+.|++|.|.|..+.++.++.+++|++|++++|+++ .++..-+..+..|+.|+|++|.++..--..|.
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            77788999999999999999999999999999999999999999999 56655555889999999999999876667789


Q ss_pred             CCCCCCeeecccccccccCC---ccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCC
Q 011044          295 NLTKLTDLYLDQNKLQGKIP---HEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPN  371 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  371 (495)
                      .+.+|++|||++|.+...+.   ..|..+++|+.|.+.+|++..+....|.++++|++|+|.+|.|. .+....+.++ .
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~  440 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-E  440 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccc-h
Confidence            99999999999999876433   45778999999999999999888889999999999999999998 5555555555 7


Q ss_pred             hhhhhh
Q 011044          372 LEELFL  377 (495)
Q Consensus       372 L~~L~l  377 (495)
                      |++|.+
T Consensus       441 Lk~Lv~  446 (873)
T KOG4194|consen  441 LKELVM  446 (873)
T ss_pred             hhhhhh
Confidence            777755

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.4e-31  Score=255.64  Aligned_cols=317  Identities=33%  Similarity=0.464  Sum_probs=175.1

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCcc-CCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGS-IPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .++.+|++++|+++ .+...++.+|.||.+.++.|++... +|..+..+..|.+|+|++|++ .+.|.++.. .+++-.|
T Consensus        55 qkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~-AKn~iVL  131 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEY-AKNSIVL  131 (1255)
T ss_pred             hhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhh-hcCcEEE
Confidence            35566666666665 2234455566666666666655432 555666666666666666665 355655554 5666666


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      +|++|+|.......+-+++.|-+|+|++|.+. .+|..+..+.+|++|.|++|.+.-.-...+..+++|+.|.+++.+-+
T Consensus       132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             EcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence            66666665322223445666666666666665 45555666666666666666543211122223344444555544322


Q ss_pred             -CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccc
Q 011044          214 -GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE  292 (495)
Q Consensus       214 -~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  292 (495)
                       ..+|..+..+.+|..+++|.|.+. .+|..+..+++|+.|++++|.++ .+..... ...+|++|+++.|+++ .+|..
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHH
Confidence             234555555556666666665554 44555555566666666666555 3333333 3445566666666655 55555


Q ss_pred             ccCCCCCCeeecccccccc-cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCC
Q 011044          293 IGNLTKLTDLYLDQNKLQG-KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPN  371 (495)
Q Consensus       293 l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  371 (495)
                      +..+++|+.|.+.+|+++- .+|+.++.+..|+.+..++|.+. .+|..++.|..|+.|.++.|.+. .+|..+. -+|.
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~  363 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPD  363 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCC
Confidence            6666666666666665442 35555666666666666655554 45556666666666666666654 4454443 3555


Q ss_pred             hhhhhhhhcCC
Q 011044          372 LEELFLWEYGR  382 (495)
Q Consensus       372 L~~L~l~~~~~  382 (495)
                      |+.|++.+|+.
T Consensus       364 l~vLDlreNpn  374 (1255)
T KOG0444|consen  364 LKVLDLRENPN  374 (1255)
T ss_pred             cceeeccCCcC
Confidence            66666655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.3e-30  Score=251.70  Aligned_cols=296  Identities=28%  Similarity=0.424  Sum_probs=264.6

Q ss_pred             CCCeEEEEcCCCCCccc-CchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCE
Q 011044           54 SHRVAALNISGLNLTGT-IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES  132 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~  132 (495)
                      -+++++++++.|++... +|+.+-.+..|.+|+|++|+++ ..|..+...+++-+|+|++|+| ..||..++.++..|-.
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhh
Confidence            36788999999988654 7788999999999999999998 8999999999999999999999 7999999988999999


Q ss_pred             EEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC-CCCChhhhCcccccEEEecCCc
Q 011044          133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ-GEIPEELGNLAELEMLWLQNNS  211 (495)
Q Consensus       133 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~  211 (495)
                      |+|++|++. .+|..+..+.+|++|.|++|.+.-.....+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            999999998 78888999999999999999887544455666788889999987643 4689999999999999999999


Q ss_pred             CCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee-eccc
Q 011044          212 LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS-GAIP  290 (495)
Q Consensus       212 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~  290 (495)
                      +. ..|..+.++++|+.|+||+|.++.. ....+...+|++|+++.|+++ .+|..+. .++.|+.|.+.+|+++ ..+|
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCc
Confidence            98 7899999999999999999999854 334567789999999999999 8999988 8999999999999875 3678


Q ss_pred             ccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          291 KEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       291 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      ..++.+.+|+.+..++|.+. .+|..+..|..|+.|.|++|++. .+|..+.-++.|+.||+..|+-.
T Consensus       310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            89999999999999999987 89999999999999999999987 58999999999999999999865

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=4.1e-28  Score=223.27  Aligned_cols=93  Identities=35%  Similarity=0.484  Sum_probs=67.8

Q ss_pred             cccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCccc-----------------------ccCCcCccCC
Q 011044          288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLV-----------------------GVVPAPIFNL  344 (495)
Q Consensus       288 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l  344 (495)
                      ..|..++.+++|..|++++|.+. .+|..++.+..|+.|++++|++.                       ...+..+.++
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            44555667777777777777665 56777777777777777766543                       2334447788


Q ss_pred             CCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          345 STLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       345 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      .+|..||+.+|.+. .+|.... .+.+|++|.+++|++.
T Consensus       505 ~nL~tLDL~nNdlq-~IPp~Lg-nmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ-QIPPILG-NMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchh-hCChhhc-cccceeEEEecCCccC
Confidence            88999999999987 6676655 5889999999988865

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=2.1e-27  Score=218.61  Aligned_cols=292  Identities=29%  Similarity=0.440  Sum_probs=207.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .++++||...|-++ .+|+.++.+.+|.-|+|+.|++. .+| .|.+|..|+.|+++.|.+ ..+|...+.+++++.+|+
T Consensus       183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeee
Confidence            35566666666554 67777888888888888888876 556 677788888888877777 577777777788888888


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC------------------------
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG------------------------  190 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------------------  190 (495)
                      +..|+++ ..|..+..+.+|..||+++|.++ .+|..++++ +|+.|.+.+|.+..                        
T Consensus       259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d  335 (565)
T KOG0472|consen  259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD  335 (565)
T ss_pred             ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence            8888887 67777777888888888888887 567777777 78888777776421                        


Q ss_pred             -------------C-CC---hhhhCcccccEEEecCCcCCCcCchhhhcCCC---CceeeCCCCcC--------------
Q 011044          191 -------------E-IP---EELGNLAELEMLWLQNNSLTGTIPSSIFSLSS---LLNLDLSLNNF--------------  236 (495)
Q Consensus       191 -------------~-~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l--------------  236 (495)
                                   . .+   .....+.+.+.|++++-+++ .+|...+....   .+.++++.|++              
T Consensus       336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelv  414 (565)
T KOG0472|consen  336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELV  414 (565)
T ss_pred             CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence                         0 00   00111223444444444443 23333222221   33444444433              


Q ss_pred             ---------CCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccc
Q 011044          237 ---------TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN  307 (495)
Q Consensus       237 ---------~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  307 (495)
                               .+.+|..+..+++|..|++++|.+. .+|..++ .+..|+.|+++.|.|. ..|..+..+..++.+-.++|
T Consensus       415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~-~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~n  491 (565)
T KOG0472|consen  415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG-SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNN  491 (565)
T ss_pred             HHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh-hhhhhheecccccccc-cchHHHhhHHHHHHHHhccc
Confidence                     3356666777788888888888776 7887777 6777888888888876 67777766677777777778


Q ss_pred             cccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       308 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      ++...-+..+.++.+|..|++.+|.+. .+|..++++.+|++|++++|++.
T Consensus       492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            887555556899999999999999988 67889999999999999999987

>PLN03210 Resistant to P

Probab=99.90  E-value=2.9e-22  Score=223.29  Aligned_cols=308  Identities=24%  Similarity=0.266  Sum_probs=151.4

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      +++.|.+.++.+. .+|..+ .+.+|++|++.+|.+. .++..+..+++|++|+++++...+.+|. +. .+++|++|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEe
Confidence            4555555555443 334333 3455666666666554 4455555566666666665544445543 22 2566666666


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      ++|.....+|..++++++|+.|++++|.....+|..+ ++++|++|++++|.....+|..   .++|++|++++|.+. .
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence            6655444556666666666666666554333455443 4556666666665444333321   234555666655554 3


Q ss_pred             CchhhhcCCCCceeeCCCCcCC-------CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeec
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFT-------GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA  288 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~-------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  288 (495)
                      +|..+ .+++|++|.+.++...       ...+......++|+.|++++|.....+|..+. .+++|+.|++++|...+.
T Consensus       740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET  817 (1153)
T ss_pred             ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe
Confidence            33322 2344444444332110       00011111224555555555544445555544 555666666655543334


Q ss_pred             ccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCC
Q 011044          289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVP  368 (495)
Q Consensus       289 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  368 (495)
                      +|..+ .+++|+.|++++|.....+|.   ..++|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|.... .
T Consensus       818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~-~  891 (1153)
T PLN03210        818 LPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS-K  891 (1153)
T ss_pred             eCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccc-c
Confidence            44333 455555555555543333332   1245555666665554 3455555666666666666443334443322 3


Q ss_pred             CCChhhhhhhhcC
Q 011044          369 LPNLEELFLWEYG  381 (495)
Q Consensus       369 l~~L~~L~l~~~~  381 (495)
                      +++|+.+++.+|.
T Consensus       892 L~~L~~L~l~~C~  904 (1153)
T PLN03210        892 LKHLETVDFSDCG  904 (1153)
T ss_pred             ccCCCeeecCCCc
Confidence            4445554544443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.4e-21  Score=216.02  Aligned_cols=288  Identities=24%  Similarity=0.291  Sum_probs=230.1

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      +.+++.|+|+++.+. .++..+..+++|++|+|+++.....+|. +..+++|++|++++|.....+|..+.. +++|+.|
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~-L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY-LNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhc-cCCCCEE
Confidence            468999999999987 5677788999999999998865557774 888999999999999887899988876 9999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.....+|..+ ++++|++|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|++|.+.++...
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence            999987555777765 7899999999998765555542   468999999999986 566654 5788888888764321


Q ss_pred             -------CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044          214 -------GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS  286 (495)
Q Consensus       214 -------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  286 (495)
                             ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+  .+++|+.|++++|...
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRL  838 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcc
Confidence                   1112223345789999999998877888889999999999999885444777654  5789999999998654


Q ss_pred             ecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCc
Q 011044          287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS  356 (495)
Q Consensus       287 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  356 (495)
                      ..+|..   .++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            455543   367899999999987 678888999999999999975444577778888999999999886

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.5e-20  Score=195.43  Aligned_cols=263  Identities=28%  Similarity=0.380  Sum_probs=200.8

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .+-..|++++++++ .+|+.+.  ++|+.|++.+|.++ .+|.   ..++|++|++++|.++ .+|..    .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            34567899999998 6777665  48999999999988 4664   2578999999999886 55642    57899999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.++ .+|..+   .+|+.|++++|+++ .+|.   ..++|++|++++|.+.+ +|..   ..+|+.|++++|.+++
T Consensus       269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            9999887 455432   56888999999988 4554   24689999999999884 4432   3467888999999873


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                       +|..   ..+|+.|++++|++++. |..   ..+|+.|++++|.++ .+|..    ..+|+.|++++|.+++ +|..  
T Consensus       337 -LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l--  400 (788)
T PRK15387        337 -LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL--  400 (788)
T ss_pred             -cccc---ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc--
Confidence             5531   24799999999999853 432   357888999999987 56642    3578999999999874 4432  


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCC
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS  363 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  363 (495)
                       .++|+.|++++|+++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus       401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence             3678999999999884 6643   347888999999988 5788888999999999999999866443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=1.1e-22  Score=205.66  Aligned_cols=245  Identities=29%  Similarity=0.357  Sum_probs=170.5

Q ss_pred             CCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEE
Q 011044          103 SSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLN  182 (495)
Q Consensus       103 ~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (495)
                      .+|++++++.|.++ .+|..+.. +.+|+.|...+|.++ .+|..+...++|+.|.+..|.+. .+|....++..|++|+
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            45666666666663 45544444 666666666666664 55666666666666666666665 4555556666777777


Q ss_pred             ccCCCCCCCCChh-hhCccc-ccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccc
Q 011044          183 LRQNKLQGEIPEE-LGNLAE-LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL  260 (495)
Q Consensus       183 L~~n~l~~~~~~~-l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l  260 (495)
                      |..|.+. .+|+. +.-... |+.|+.+.|.+.......=...+.|+.|.+.+|.+++.....+..+.+|+.|+|++|.+
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            7777665 33332 222222 55555565555422211122356788888888888877666788888999999999988


Q ss_pred             ccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcC
Q 011044          261 SGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP  340 (495)
Q Consensus       261 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  340 (495)
                      . .+|.....+++.|+.|+|++|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++......
T Consensus       396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence            7 788777778888999999999887 67788888889999999888887 556 6788899999999999887544333


Q ss_pred             ccCCCCCcEEEccCCc
Q 011044          341 IFNLSTLISLQLHNNS  356 (495)
Q Consensus       341 ~~~l~~L~~L~l~~n~  356 (495)
                      ...-++|++||+++|.
T Consensus       472 ~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  472 ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hCCCcccceeeccCCc
Confidence            3333789999999986

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=3.9e-20  Score=193.65  Aligned_cols=313  Identities=23%  Similarity=0.397  Sum_probs=226.9

Q ss_pred             CChHHHHHHHHHHhhCCCCCCcccc---CCCCCCCCCCccce----------------eeeCCCCCCeEEEEcCCCCCcc
Q 011044            9 SITTDQQALLVLKAHVTDDPTNFLA---KNWNTSSSFCYWTG----------------VTCDVRSHRVAALNISGLNLTG   69 (495)
Q Consensus         9 ~~~~~~~~ll~~~~~~~~~~~~~l~---~~w~~~~~~c~w~g----------------v~c~~~~~~l~~L~L~~~~l~~   69 (495)
                      ...+|.++++++...+ ..|. ...   ..|+...++|.-..                |.|..  +.++++..-+.....
T Consensus        60 ~~~~~~~~~~~~~~~l-~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~~  135 (754)
T PRK15370         60 ASPEEIKSKFECLRML-AFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQAS  135 (754)
T ss_pred             CCHHHHHHHHHHHHHh-cCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Ccccccccccccccc
Confidence            3567899999999999 4663 343   24998889997644                45543  567777654432211


Q ss_pred             cC--ch--------------------------hc-----cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCccc
Q 011044           70 TI--PS--------------------------EL-----ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLF  116 (495)
Q Consensus        70 ~~--~~--------------------------~l-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  116 (495)
                      ..  +.                          .+     .-..+...|+++++.++ .+|..+.  ++|+.|++++|.+.
T Consensus       136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt  212 (754)
T PRK15370        136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK  212 (754)
T ss_pred             cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC
Confidence            10  00                          00     01145788999998887 5666553  57999999999985


Q ss_pred             ccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhh
Q 011044          117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL  196 (495)
Q Consensus       117 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  196 (495)
                       .+|..+.   ++|++|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|++|++++|.+. .+|..+
T Consensus       213 -sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l  281 (754)
T PRK15370        213 -SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL  281 (754)
T ss_pred             -cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc
Confidence             6777663   58999999999988 5666553  47999999999988 6676654  57999999999988 567655


Q ss_pred             hCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccc
Q 011044          197 GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ  276 (495)
Q Consensus       197 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  276 (495)
                      .  ++|+.|++++|.++. +|..+.  ++|+.|++++|.++.. |..+  .++|+.|++++|.++ .+|..+.   ++|+
T Consensus       282 ~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~  349 (754)
T PRK15370        282 P--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALT-SLPASLP---PELQ  349 (754)
T ss_pred             C--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCccc-cCChhhc---Cccc
Confidence            3  589999999999884 554432  4788999999998853 4333  368999999999988 5776543   6899


Q ss_pred             ccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCc----cCCCCCcEEEc
Q 011044          277 TLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI----FNLSTLISLQL  352 (495)
Q Consensus       277 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l  352 (495)
                      .|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ..|+.|++++|++. .+|..+    ..++.+..+++
T Consensus       350 ~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L  422 (754)
T PRK15370        350 VLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIV  422 (754)
T ss_pred             EEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEe
Confidence            9999999887 4565543  68999999999988 5565543  46889999999987 445433    34578899999


Q ss_pred             cCCcCc
Q 011044          353 HNNSLS  358 (495)
Q Consensus       353 ~~n~l~  358 (495)
                      .+|++.
T Consensus       423 ~~Npls  428 (754)
T PRK15370        423 EYNPFS  428 (754)
T ss_pred             eCCCcc
Confidence            999886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.84  E-value=6.3e-23  Score=207.30  Aligned_cols=309  Identities=28%  Similarity=0.367  Sum_probs=190.5

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc--------------------
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL--------------------  115 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~--------------------  115 (495)
                      .++.++|..+.+.+.++..+..+.+  .|+|+.|.+..   ..+.++.+|+.|....|.+                    
T Consensus       157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l  231 (1081)
T KOG0618|consen  157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPL  231 (1081)
T ss_pred             cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcc
Confidence            3677777777777777777776666  67777777651   1244455555555555444                    


Q ss_pred             cccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChh
Q 011044          116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE  195 (495)
Q Consensus       116 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  195 (495)
                      ....+..   .-.+|+++++++|.++ .+|..++.+.+|+.++..+|.+. .+|..+....+|++|.+..|.+. .+|..
T Consensus       232 ~~~~~~p---~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~  305 (1081)
T KOG0618|consen  232 TTLDVHP---VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPF  305 (1081)
T ss_pred             eeecccc---ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence            2111100   0234555555555554 34455555555555555555553 44444555555555555555554 44444


Q ss_pred             hhCcccccEEEecCCcCCCcCchhh-hcCC-CCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCc
Q 011044          196 LGNLAELEMLWLQNNSLTGTIPSSI-FSLS-SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP  273 (495)
Q Consensus       196 l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~-~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  273 (495)
                      ..+++.|++|+|..|.+. .+|+.+ .-.. .|..|+.+.|.+.......=...+.|+.|++.+|.+++.....+. .++
T Consensus       306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~  383 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFK  383 (1081)
T ss_pred             ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-ccc
Confidence            455555555555555554 233322 2222 244555555554432211112345678888888888866555444 778


Q ss_pred             cccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044          274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH  353 (495)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  353 (495)
                      +|+.|+|++|++.......+.+++.|+.|+|++|+++ .+|.....++.|++|...+|++. ..| .+..++.|+.+|++
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence            8999999999887544456788888889999999888 67788888889999988888887 456 78899999999999


Q ss_pred             CCcCceecCCCCCCCCCChhhhhhhhcC
Q 011044          354 NNSLSGSLPSSADVPLPNLEELFLWEYG  381 (495)
Q Consensus       354 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~  381 (495)
                      .|+++...-. ...+-|+|++|++.+|.
T Consensus       461 ~N~L~~~~l~-~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  461 CNNLSEVTLP-EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cchhhhhhhh-hhCCCcccceeeccCCc
Confidence            9998733222 12234789999888666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=6.5e-20  Score=191.98  Aligned_cols=252  Identities=26%  Similarity=0.442  Sum_probs=192.1

Q ss_pred             eeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcC
Q 011044           48 VTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQM  127 (495)
Q Consensus        48 v~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l  127 (495)
                      ..|..  .+.+.|++++++++ .+|..+.  ++|+.|+|++|.++ .+|..+.  ++|++|++++|.+. .+|..+   .
T Consensus       173 ~~Cl~--~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~  240 (754)
T PRK15370        173 RDCLK--NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---P  240 (754)
T ss_pred             Hhhcc--cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---h
Confidence            34543  56789999999988 4565453  57999999999998 5666554  58999999999985 677765   3


Q ss_pred             CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL  207 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  207 (495)
                      ++|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|++|++++|.++. +|..+.  ++|+.|++
T Consensus       241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~L  311 (754)
T PRK15370        241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNV  311 (754)
T ss_pred             ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHh
Confidence            57999999999988 6676654  57999999999988 5676554  589999999999884 554442  47889999


Q ss_pred             cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044          208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG  287 (495)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  287 (495)
                      ++|.++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|.++ 
T Consensus       312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-  380 (754)
T PRK15370        312 QSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-  380 (754)
T ss_pred             cCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-
Confidence            9999883 55443  3689999999999886 454443  68999999999987 6776543   68999999999987 


Q ss_pred             cccccccCCCCCCeeecccccccccCCcc----ccCCCcCCEEeCcCCccc
Q 011044          288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHE----IGNLRKLEWLMLSHNKLV  334 (495)
Q Consensus       288 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~  334 (495)
                      .+|..+.  ..|+.|++++|++. .+|..    +..++.+..|++.+|++.
T Consensus       381 ~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        381 NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4555543  36889999999987 44443    344578899999999876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=9.6e-22  Score=181.19  Aligned_cols=134  Identities=24%  Similarity=0.308  Sum_probs=119.6

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccC-CcccccCChhHhhcCCCCCE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNN-NTLFGELPPNFCNQMSNLES  132 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~l~~L~~  132 (495)
                      |+..+.|.|..|+|+...+.+|+.+++||.|+|++|.|+.+.|++|.++++|..|.+.+ |+| ..+|...+.++..|+.
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHH
Confidence            67889999999999988888999999999999999999999999999999998888877 666 6899998888999999


Q ss_pred             EEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044          133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL  188 (495)
Q Consensus       133 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  188 (495)
                      |.+.-|++.-.....|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            99999999877788899999999999999988844444788889999999988874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=5.6e-19  Score=183.90  Aligned_cols=244  Identities=27%  Similarity=0.353  Sum_probs=193.5

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++.|++.+|+++. +|.   .+++|++|++++|+++ .+|..   .++|++|++++|.+. .+|..    ..+|+.|+
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~  288 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLW  288 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc----hhhcCEEE
Confidence            579999999999985 453   3689999999999998 45642   468999999999984 45542    46799999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.+++ +|.   ...+|+.|++++|.++.
T Consensus       289 Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        289 IFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS  356 (788)
T ss_pred             CcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC
Confidence            9999998 45553   4789999999999985 4542   2468889999999874 553   12579999999999984


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                       +|..   .++|+.|++++|.++. +|..   ..+|+.|++++|.++ .+|..    .++|+.|++++|.+++ +|..  
T Consensus       357 -LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l--  420 (788)
T PRK15387        357 -LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML--  420 (788)
T ss_pred             -CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc--
Confidence             5542   3578899999999985 4543   357999999999998 56642    3689999999999984 5543  


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCc
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI  341 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  341 (495)
                       ..+|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+
T Consensus       421 -~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        421 -PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             -hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence             357889999999998 789999999999999999999998766655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=1e-20  Score=183.65  Aligned_cols=203  Identities=27%  Similarity=0.293  Sum_probs=108.1

Q ss_pred             EEEcCCCCCcc-cCchhccCCCCCCEEeCcCCcCCcc----CCccccCCCCCcEEEccCCcccc------cCChhHhhcC
Q 011044           59 ALNISGLNLTG-TIPSELANLSSLQALDLSFNWFYGS----IPSSIFNMSSLLSIYFNNNTLFG------ELPPNFCNQM  127 (495)
Q Consensus        59 ~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~p~~~~~~l  127 (495)
                      .|+|..+.+++ .....+..+++|++|+++++.+++.    ++..+...++|++++++++.+.+      .++..+.. +
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-G   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-c
Confidence            35555666552 2334455566677777777766432    34445556666777776665531      12222323 5


Q ss_pred             CCCCEEEcccccCCccCCcccCCCCC---CCEEEcccCcCcc----ccCccccCC-CCCCEEEccCCCCCCC----CChh
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQ---LRELSLSSNYFSG----TIPKEIGNL-TKLTRLNLRQNKLQGE----IPEE  195 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~  195 (495)
                      ++|+.|++++|.+....+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            66777777666665444443333333   6777776666652    122334444 6667777776666532    2223


Q ss_pred             hhCcccccEEEecCCcCCCc----CchhhhcCCCCceeeCCCCcCCCCC----CcccccccccceeeccCccccc
Q 011044          196 LGNLAELEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGII----PSSIGNLSSLQKLYLSDNQLSG  262 (495)
Q Consensus       196 l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~  262 (495)
                      +..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..    ...+..+++|+.|++++|.+++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            44555666666666666532    2223344456666666666654321    2223445556666666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=5e-20  Score=178.79  Aligned_cols=254  Identities=22%  Similarity=0.244  Sum_probs=114.8

Q ss_pred             EEeCcCCcCCc-cCCccccCCCCCcEEEccCCccccc----CChhHhhcCCCCCEEEcccccCCc------cCCcccCCC
Q 011044           83 ALDLSFNWFYG-SIPSSIFNMSSLLSIYFNNNTLFGE----LPPNFCNQMSNLESLFLKYNMFHG------KIPSTLSSC  151 (495)
Q Consensus        83 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l  151 (495)
                      .|+|..+.+++ .....+..+.+|++|+++++.+.+.    ++..+. ..++|++|+++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            35555555552 2333344455566666666665322    222222 24556666665555441      112233344


Q ss_pred             CCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC----cCchhhhcC-CCC
Q 011044          152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG----TIPSSIFSL-SSL  226 (495)
Q Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l-~~L  226 (495)
                      ++|+.|++++|.+.+..+..+..+.+                    . ++|++|++++|.+++    .+...+..+ ++|
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L  139 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL  139 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence            45555555544444333333322222                    0 114455554444431    111223333 455


Q ss_pred             ceeeCCCCcCCCC----CCcccccccccceeeccCcccccccchhhh---hCCccccccccccceeeec----ccccccC
Q 011044          227 LNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSGELPANIG---NNLPSLQTLSLYVNDFSGA----IPKEIGN  295 (495)
Q Consensus       227 ~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~l~~  295 (495)
                      +.|++++|.+++.    ++..+..+++|++|++++|.+++.....+.   ..+++|+.|++++|.+++.    +...+..
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence            5555555554421    112233344555555555555432111111   1233555555655555321    2233445


Q ss_pred             CCCCCeeecccccccccCCcccc-----CCCcCCEEeCcCCcccc----cCCcCccCCCCCcEEEccCCcCc
Q 011044          296 LTKLTDLYLDQNKLQGKIPHEIG-----NLRKLEWLMLSHNKLVG----VVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       296 l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      +++|++|++++|.+++.....+.     ..+.|++|++++|.+++    .+...+..+++|+++++++|.+.
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            56666666666666542111111     13566666666666642    12223344466677777776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=2.2e-20  Score=172.33  Aligned_cols=293  Identities=23%  Similarity=0.251  Sum_probs=178.5

Q ss_pred             EcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc-cc
Q 011044           61 NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY-NM  139 (495)
Q Consensus        61 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~-n~  139 (495)
                      +-++.+++ .+|..+-  +.-..++|..|+|+...+.+|+.+++|+.|+|++|.|+..-|..|.. +++|.+|-+.+ |+
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLLSLVLYGNNK  127 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh-hHhhhHHHhhcCCc
Confidence            44455555 3444332  35678889999998777788888999999999999886555555554 88877776666 78


Q ss_pred             CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC-----
Q 011044          140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG-----  214 (495)
Q Consensus       140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----  214 (495)
                      |+......|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+....-.+|..+..++.+.+..|.+..     
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            886556678888888888888888876666778888888888888887763333367777888888777665320     


Q ss_pred             -------cCchhhhcCCCCceeeCCCCcCCCCCCccccc-ccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044          215 -------TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN-LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS  286 (495)
Q Consensus       215 -------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  286 (495)
                             ..|..++...-..-..+.+.++..+.+..+.- ...+..--.+.+...+..|..-+..+++|+.|+|++|.++
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                   01111111111111222222222221111110 0111111112222223444444556666777777777666


Q ss_pred             ecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcC
Q 011044          287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL  357 (495)
Q Consensus       287 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  357 (495)
                      ++-..+|.+...++.|.|..|++.......|.++..|+.|+|.+|+|+...|..|..+.+|..|++-.|++
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            66666666666666677766666644444566666666677777776666666666666666666666544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=6.5e-19  Score=144.65  Aligned_cols=155  Identities=28%  Similarity=0.474  Sum_probs=96.6

Q ss_pred             CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044           77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE  156 (495)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (495)
                      ++.+++.|.|++|+++ .+|..++.+.+|+.|++++|++ ..+|..+.. +++|+.|++.-|++. .+|..|+.++.|++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhhh-chhhhheecchhhhh-cCccccCCCchhhh
Confidence            4455555666666665 4455566666666666666665 455666555 666666666666665 56666777777777


Q ss_pred             EEcccCcCc-cccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc
Q 011044          157 LSLSSNYFS-GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN  235 (495)
Q Consensus       157 L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  235 (495)
                      ||+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.+..|++|.+.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            777666554 235555666666666666666665 55666666666666666666655 456666666666666666666


Q ss_pred             CC
Q 011044          236 FT  237 (495)
Q Consensus       236 l~  237 (495)
                      ++
T Consensus       185 l~  186 (264)
T KOG0617|consen  185 LT  186 (264)
T ss_pred             ee
Confidence            65

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.2e-18  Score=143.21  Aligned_cols=161  Identities=36%  Similarity=0.606  Sum_probs=111.1

Q ss_pred             CCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044          127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW  206 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  206 (495)
                      +.+.+.|.+++|+++ .+|..+..+.+|++|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            555666667777666 45556667777777777777766 56666777777777777776665 6677777777777777


Q ss_pred             ecCCcCC-CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccccccccccee
Q 011044          207 LQNNSLT-GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF  285 (495)
Q Consensus       207 l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  285 (495)
                      +.+|.+. ..+|..|..+..|+.|.+++|.++ .+|..++++++|+.|.+..|.+. ..|..++ .+..|+.|++.+|.+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRL  185 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhccccee
Confidence            7776665 345666777777777777777776 55556777777777777777776 6777766 577777777777777


Q ss_pred             eeccccccc
Q 011044          286 SGAIPKEIG  294 (495)
Q Consensus       286 ~~~~~~~l~  294 (495)
                      + .+|..++
T Consensus       186 ~-vlppel~  193 (264)
T KOG0617|consen  186 T-VLPPELA  193 (264)
T ss_pred             e-ecChhhh
Confidence            6 4444443

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=6.7e-15  Score=153.79  Aligned_cols=151  Identities=26%  Similarity=0.500  Sum_probs=117.4

Q ss_pred             CCCCChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCC-----ccceeeeCCCC----CCeEEEEcCCCCCcccCchhcc
Q 011044            6 NTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFC-----YWTGVTCDVRS----HRVAALNISGLNLTGTIPSELA   76 (495)
Q Consensus         6 ~~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c-----~w~gv~c~~~~----~~l~~L~L~~~~l~~~~~~~l~   76 (495)
                      .+...++|+.||+.+|+.+ +++..  . +|+.  ++|     .|.|+.|....    ..++.|+|+++.+.|.+|..++
T Consensus       366 ~~~t~~~~~~aL~~~k~~~-~~~~~--~-~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~  439 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSL-GLPLR--F-GWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS  439 (623)
T ss_pred             ccccCchHHHHHHHHHHhc-CCccc--C-CCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence            3445677999999999999 45542  3 8964  344     79999995321    2589999999999999999999


Q ss_pred             CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCC-CCCC
Q 011044           77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSC-KQLR  155 (495)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~  155 (495)
                      .+++|++|+|++|.+.|.+|..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|..+... .++.
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEECcCCcccccCChHHhhccccCc
Confidence            9999999999999999888888888888888888888888888877765 7788888888887777777766542 3455


Q ss_pred             EEEcccCc
Q 011044          156 ELSLSSNY  163 (495)
Q Consensus       156 ~L~l~~n~  163 (495)
                      .+++.+|.
T Consensus       519 ~l~~~~N~  526 (623)
T PLN03150        519 SFNFTDNA  526 (623)
T ss_pred             eEEecCCc
Confidence            56655554

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=5.2e-15  Score=143.87  Aligned_cols=105  Identities=26%  Similarity=0.496  Sum_probs=89.0

Q ss_pred             hhhcCCCccccCCCcceeehhhhhhcccCCCCCcccc-CCCCCHHHHHHHHhCC-Ccceeeeccccc-cccccccchhhH
Q 011044          377 LWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIF-NGEMTLRRWVNDLLSI-SVMEVVDANLLS-WKDKHFMTKEQC  453 (495)
Q Consensus       377 l~~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~-~~~~~l~~wv~~~~~~-~~~~v~d~~l~~-~~~~~~~~~~~~  453 (495)
                      .+||..++.+++|+|||||||+++|++||++|.|... .+..+++.|++..... .+.+++|+++.. .+.     .+++
T Consensus       246 ~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~-----~~~~  320 (361)
T KOG1187|consen  246 APEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYP-----DEKE  320 (361)
T ss_pred             ChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCC-----hHHH
Confidence            4688888999999999999999999999999998654 4456799999888876 588999999863 221     1267


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      +..++++|+.|++..|.+||+|.||+++|+.+.
T Consensus       321 ~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  321 VKKLAELALRCLRPDPKERPTMSQVVKELEGIL  353 (361)
T ss_pred             HHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence            888999999999999999999999999997654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=1.6e-11  Score=122.69  Aligned_cols=178  Identities=39%  Similarity=0.582  Sum_probs=83.7

Q ss_pred             CCCCCcEEEccCCcccccCChhHhhcCC-CCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCC
Q 011044          101 NMSSLLSIYFNNNTLFGELPPNFCNQMS-NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT  179 (495)
Q Consensus       101 ~l~~L~~L~l~~n~~~~~~p~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (495)
                      .++.++.|++.+|.++ .++..... .. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|...+.++.|+
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             cccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            3344555555555542 33333322 32 5555555555554 33344455555555555555554 3333333445555


Q ss_pred             EEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcc
Q 011044          180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ  259 (495)
Q Consensus       180 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~  259 (495)
                      .|++++|.+. .+|..+.....|++|.+++|.+. ..+..+.++.++..+.+.+|++... +..++.+++++.|++++|.
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccc
Confidence            5555555554 34443333444555555555322 2334444555555555555544321 3334445555555555555


Q ss_pred             cccccchhhhhCCccccccccccceeeec
Q 011044          260 LSGELPANIGNNLPSLQTLSLYVNDFSGA  288 (495)
Q Consensus       260 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  288 (495)
                      ++ .++. ++ .+.+++.|+++++.+...
T Consensus       267 i~-~i~~-~~-~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         267 IS-SISS-LG-SLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cc-cccc-cc-ccCccCEEeccCcccccc
Confidence            54 3322 22 445555555555555433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=5.2e-12  Score=119.03  Aligned_cols=111  Identities=26%  Similarity=0.266  Sum_probs=46.8

Q ss_pred             cccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccccc-CCccccCCCcCCEE
Q 011044          248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGK-IPHEIGNLRKLEWL  326 (495)
Q Consensus       248 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L  326 (495)
                      +.|+.|.++.|.++..-...+...+|+|+.|+|+.|............+..|+.|+|++|++.+. .....+.++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            44455555555544332233333445555555555532111122223334455555555544421 11223445555555


Q ss_pred             eCcCCcccccC-CcC-----ccCCCCCcEEEccCCcCc
Q 011044          327 MLSHNKLVGVV-PAP-----IFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       327 ~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~  358 (495)
                      +++.|.+...- |..     ...+++|++|++..|++.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            55555443211 111     123455555555555553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=2.8e-12  Score=117.66  Aligned_cols=249  Identities=22%  Similarity=0.261  Sum_probs=117.8

Q ss_pred             CCCeEEEEcCCCCCccc----CchhccCCCCCCEEeCcCCc---CCccCCc-------cccCCCCCcEEEccCCcccccC
Q 011044           54 SHRVAALNISGLNLTGT----IPSELANLSSLQALDLSFNW---FYGSIPS-------SIFNMSSLLSIYFNNNTLFGEL  119 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~~~-------~l~~l~~L~~L~l~~n~~~~~~  119 (495)
                      ...++.|+|++|.+...    +...+.+.++|+..+++.-.   ....+|.       .+..+++|++|+|++|-+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            35678888888777533    33455666777777775431   1122332       2334555666666665553333


Q ss_pred             ChhH---hhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCC----
Q 011044          120 PPNF---CNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI----  192 (495)
Q Consensus       120 p~~~---~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~----  192 (495)
                      ++.+   ..++..|++|.|.+|.+...-...++  ..|..|.  .+       ...+.-++|+.+..++|++....    
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHH
Confidence            3222   22344455555555444321111111  0111111  00       11223356666666666654321    


Q ss_pred             ChhhhCcccccEEEecCCcCCCc----CchhhhcCCCCceeeCCCCcCCCC----CCcccccccccceeeccCccccccc
Q 011044          193 PEELGNLAELEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSGEL  264 (495)
Q Consensus       193 ~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~  264 (495)
                      ...|...+.|+.+.+..|.+...    +...+..+++|+.|+|.+|.++..    +...+..+++|+.|++++|.+....
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            23344455666666666655421    223344555555555555554422    1122334444455555444443222


Q ss_pred             chhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccccc----CCccccCCCcCCEEeCcCCcc
Q 011044          265 PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGK----IPHEIGNLRKLEWLMLSHNKL  333 (495)
Q Consensus       265 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l  333 (495)
                      ...+...                    .-...|+|+.|.+.+|.|+..    +..++...+.|+.|+|++|++
T Consensus       258 a~a~~~a--------------------l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDA--------------------LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHH--------------------HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2221100                    012246677777777766642    222344567777788888776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=4e-11  Score=119.87  Aligned_cols=174  Identities=39%  Similarity=0.569  Sum_probs=74.5

Q ss_pred             CCCCEEEcccCcCccccCccccCCC-CCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceee
Q 011044          152 KQLRELSLSSNYFSGTIPKEIGNLT-KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLD  230 (495)
Q Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  230 (495)
                      +.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.++ .++...+..++|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44455555555444 3333333332 4555555555544 33333445555555555555544 3333333444455555


Q ss_pred             CCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccc
Q 011044          231 LSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ  310 (495)
Q Consensus       231 Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  310 (495)
                      +++|++... |..+.....|+++.+++|.+. ..+..+. .+.++..+.+.+|.+. .++..+..++.++.|++++|.++
T Consensus       193 ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         193 LSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccchhccccccceecccccccc
Confidence            555544422 222223333444444444322 2222222 3444444444444443 11333444444455555554444


Q ss_pred             ccCCccccCCCcCCEEeCcCCccc
Q 011044          311 GKIPHEIGNLRKLEWLMLSHNKLV  334 (495)
Q Consensus       311 ~~~~~~l~~l~~L~~L~l~~n~l~  334 (495)
                      . ++. ++.+.+++.|++++|.+.
T Consensus       269 ~-i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         269 S-ISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             c-ccc-ccccCccCEEeccCcccc
Confidence            2 211 444444445554444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=8.3e-13  Score=128.08  Aligned_cols=170  Identities=29%  Similarity=0.487  Sum_probs=125.2

Q ss_pred             EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      +..||+.|.+. .+|..+..|..|+.+.|.+|.+. .+|..+.++..|++|+|+.|++ ..+|..++. |+ |+.|.+++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~-lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCD-LP-LKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhc-Cc-ceeEEEec
Confidence            44566666665 56666677777777777777776 6777778888888888888887 467777765 44 77888888


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCc
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP  217 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  217 (495)
                      |+++ .+|..++..+.|..|+.+.|.+. .+|..++++.+|+.|++..|.+. .+|+.+..+ .|..||+++|++. .+|
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence            8877 67777777777888888887776 56777777778888888777776 566666644 3777888888777 677


Q ss_pred             hhhhcCCCCceeeCCCCcCC
Q 011044          218 SSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       218 ~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ..|.+|..|++|-|.+|.++
T Consensus       228 v~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhhhheeeeeccCCCC
Confidence            77778888888888877776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=8e-12  Score=114.68  Aligned_cols=217  Identities=26%  Similarity=0.295  Sum_probs=122.9

Q ss_pred             CCeEEEEcCCCCCccc----Cc-------hhccCCCCCCEEeCcCCcCCccCCc----cccCCCCCcEEEccCCcccccC
Q 011044           55 HRVAALNISGLNLTGT----IP-------SELANLSSLQALDLSFNWFYGSIPS----SIFNMSSLLSIYFNNNTLFGEL  119 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~----~~-------~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~  119 (495)
                      +.++..++++. ++|.    +|       +.+..+|+|++|+||.|.+.-..+.    -+.++..|++|.|.+|.+...-
T Consensus        58 ~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a  136 (382)
T KOG1909|consen   58 KELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA  136 (382)
T ss_pred             ccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence            57888888764 2332    33       3556778999999999998754443    3557899999999999884222


Q ss_pred             ChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCC----
Q 011044          120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGE----  191 (495)
Q Consensus       120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----  191 (495)
                      ...+...   |..|.  .++       ...+-+.|+++...+|.+...    +...|...+.|+.+.+..|.+...    
T Consensus       137 g~~l~~a---l~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a  204 (382)
T KOG1909|consen  137 GGRLGRA---LFELA--VNK-------KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA  204 (382)
T ss_pred             HHHHHHH---HHHHH--HHh-------ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH
Confidence            2222221   11111  111       112235566666666665422    222344556667777766665421    


Q ss_pred             CChhhhCcccccEEEecCCcCCCc----CchhhhcCCCCceeeCCCCcCCCCCCccc-----ccccccceeeccCccccc
Q 011044          192 IPEELGNLAELEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGIIPSSI-----GNLSSLQKLYLSDNQLSG  262 (495)
Q Consensus       192 ~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~  262 (495)
                      +...+..+++|+.|||..|.++..    +...+..+++|+.|++++|.+.......+     ...++|+.|.+.+|.++-
T Consensus       205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            223455667777777777766522    33445566777777777777664432222     234566666666666542


Q ss_pred             cc----chhhhhCCcccccccccccee
Q 011044          263 EL----PANIGNNLPSLQTLSLYVNDF  285 (495)
Q Consensus       263 ~~----~~~~~~~l~~L~~L~L~~n~l  285 (495)
                      ..    ...+. ..+.|..|+|++|.+
T Consensus       285 da~~~la~~~~-ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  285 DAALALAACMA-EKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHHHh-cchhhHHhcCCcccc
Confidence            21    11122 245566666666655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1.6e-12  Score=126.18  Aligned_cols=196  Identities=31%  Similarity=0.499  Sum_probs=158.6

Q ss_pred             CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044           77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE  156 (495)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (495)
                      .+.--...+++.|++. .+|..+..+..|..+.+..|.+ -.+|..++. +..|+.|+|+.|+++ .+|..++.|+ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3455567788899887 8888888888899999999988 588888887 899999999999988 6788888877 899


Q ss_pred             EEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcC
Q 011044          157 LSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF  236 (495)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  236 (495)
                      |-+++|+++ .+|..++.+.+|..|+.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..+ .|..||++.|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            999999988 78888998889999999999987 67888999999999999999887 677777744 588999999998


Q ss_pred             CCCCCcccccccccceeeccCcccccccchhhhh--CCccccccccccc
Q 011044          237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN--NLPSLQTLSLYVN  283 (495)
Q Consensus       237 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~L~~n  283 (495)
                      . .+|-.|.+++.|++|.|.+|.+. .-|..+..  ...=.++|+...+
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            8 56777899999999999999987 44544321  1122455555555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=1.1e-11  Score=111.23  Aligned_cols=133  Identities=32%  Similarity=0.311  Sum_probs=85.5

Q ss_pred             hhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCC
Q 011044          220 IFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL  299 (495)
Q Consensus       220 l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  299 (495)
                      +...+.|++++|++|.|+. +..+..-.+.++.|++++|.+. .+.. +. .+++|+.|+|++|.++ .+..+-..+.+.
T Consensus       280 ~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             cchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3344566677777776653 3344555567777777777665 2222 33 5677777777777665 333344456677


Q ss_pred             CeeecccccccccCCccccCCCcCCEEeCcCCcccc-cCCcCccCCCCCcEEEccCCcCce
Q 011044          300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG-VVPAPIFNLSTLISLQLHNNSLSG  359 (495)
Q Consensus       300 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~  359 (495)
                      +.|.|++|.+.+.  ..++.+-+|..|++++|+|.. .-...++++|-|+.+.+.+|++.+
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7777777776532  345566677788888887654 223467888888888888888873

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.2e-12  Score=119.03  Aligned_cols=226  Identities=22%  Similarity=0.205  Sum_probs=150.0

Q ss_pred             EEEcCCCCCcccCchh----ccCCCCCCEEeCcCCcCCccCC-ccccCCCCCcEEEccCCcccccCC-hhHhhcCCCCCE
Q 011044           59 ALNISGLNLTGTIPSE----LANLSSLQALDLSFNWFYGSIP-SSIFNMSSLLSIYFNNNTLFGELP-PNFCNQMSNLES  132 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~~l~~L~~  132 (495)
                      .+.+++..+.+..-+.    =+++.+|+...|.++.+....- .....|++++.|+|++|-+..-.+ ..+...+|+|+.
T Consensus        97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~  176 (505)
T KOG3207|consen   97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN  176 (505)
T ss_pred             HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence            3444554444332222    2467888888888887753221 345678889999999887754322 456667899999


Q ss_pred             EEcccccCCccCCc-ccCCCCCCCEEEcccCcCccc-cCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCC
Q 011044          133 LFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN  210 (495)
Q Consensus       133 L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  210 (495)
                      |+++.|++...... .-..+++|+.|.++.|.++.. +..-+..+++|+.|++..|.....-......+..|+.|+|++|
T Consensus       177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N  256 (505)
T KOG3207|consen  177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN  256 (505)
T ss_pred             cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence            99999887532211 113567888999999888732 2223446788999999988533333344556778999999988


Q ss_pred             cCCCc-CchhhhcCCCCceeeCCCCcCCCC-CCcc-----cccccccceeeccCcccccccc--hhhhhCCccccccccc
Q 011044          211 SLTGT-IPSSIFSLSSLLNLDLSLNNFTGI-IPSS-----IGNLSSLQKLYLSDNQLSGELP--ANIGNNLPSLQTLSLY  281 (495)
Q Consensus       211 ~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~L~  281 (495)
                      .+-.. .....+.++.|+.|+++.+.+... .|+.     ...+++|+.|++..|++. ..+  ..+. .+++|+.|.+.
T Consensus       257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~-~l~nlk~l~~~  334 (505)
T KOG3207|consen  257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLR-TLENLKHLRIT  334 (505)
T ss_pred             cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhh-ccchhhhhhcc
Confidence            87522 124567788999999998887754 2222     245689999999999885 222  2233 56788888887


Q ss_pred             cceee
Q 011044          282 VNDFS  286 (495)
Q Consensus       282 ~n~l~  286 (495)
                      .|.+.
T Consensus       335 ~n~ln  339 (505)
T KOG3207|consen  335 LNYLN  339 (505)
T ss_pred             ccccc
Confidence            77775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.4e-10  Score=99.79  Aligned_cols=105  Identities=27%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCCCcccCchhcc-CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           56 RVAALNISGLNLTGTIPSELA-NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++|+|+++.|+..  ..++ .+.+|+.|++++|.|+. +. .+..+++|++|++++|.++ .++..+...+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            567777777777633  3454 46677777777777763 22 3566677777777777764 34444433366777777


Q ss_pred             cccccCCcc-CCcccCCCCCCCEEEcccCcCc
Q 011044          135 LKYNMFHGK-IPSTLSSCKQLRELSLSSNYFS  165 (495)
Q Consensus       135 l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~  165 (495)
                      +++|++... .-..+..+++|++|++.+|.++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777766531 1233445556666666655554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.08  E-value=1e-10  Score=125.17  Aligned_cols=271  Identities=22%  Similarity=0.220  Sum_probs=130.5

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCc--CCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNW--FYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .++...+-++.+.-. +. -...+.|++|-+..|.  +.......|..++.|++||+++|.-.+.+|..+.. +-+|++|
T Consensus       524 ~~rr~s~~~~~~~~~-~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI-AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhc-cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcc
Confidence            455555555544311 11 1233456666666664  33222233555666777777766655666666665 6667777


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCC--CCCCChhhhCcccccEEEecCCc
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL--QGEIPEELGNLAELEMLWLQNNS  211 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~l~~n~  211 (495)
                      +++++.+. .+|..++++..|.+|++..+.....+|..+..+.+|++|.+.....  +...-..+.++.+|+.+......
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            77766666 5666666777777777666554434455455566777766654431  11122233444444444443222


Q ss_pred             CCCcCchhhhcCCCCc----eeeCCCCcCCCCCCcccccccccceeeccCcccccccchh-----hhhCCcccccccccc
Q 011044          212 LTGTIPSSIFSLSSLL----NLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN-----IGNNLPSLQTLSLYV  282 (495)
Q Consensus       212 l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-----~~~~l~~L~~L~L~~  282 (495)
                      .  .+...+..+++|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.......     ....++++..+...+
T Consensus       680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~  756 (889)
T KOG4658|consen  680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN  756 (889)
T ss_pred             h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence            1  1111122222222    2222222221 22334556666777777666554211100     000122333333333


Q ss_pred             ceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCccc
Q 011044          283 NDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLV  334 (495)
Q Consensus       283 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~  334 (495)
                      +... ..+.+..-.++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus       757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             cccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            3222 12223334567777777777655444444444444444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=1.4e-10  Score=124.29  Aligned_cols=275  Identities=23%  Similarity=0.260  Sum_probs=170.5

Q ss_pred             ccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc-cccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCC
Q 011044           75 LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL-FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ  153 (495)
Q Consensus        75 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  153 (495)
                      ..+....+...+.+|.+. .++.. ..+++|++|-+.+|.. ...++..++..++.|+.|++++|.-.+.+|..++++-+
T Consensus       519 ~~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344567788888888765 33332 3455899999988862 46777887877999999999988776789999999999


Q ss_pred             CCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC--CcCchhhhcCCCCceeeC
Q 011044          154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT--GTIPSSIFSLSSLLNLDL  231 (495)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L  231 (495)
                      ||+|+++++.+. .+|..++++..|.+|++..+.....+|.....+++|++|.+......  ......+.++.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999999888 78999999999999999888765556666677899999988765422  223334455566665555


Q ss_pred             CCCcCCCCCCcccccccccc----eeeccCcccccccchhhhhCCccccccccccceeeecccccccC------CCCCCe
Q 011044          232 SLNNFTGIIPSSIGNLSSLQ----KLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN------LTKLTD  301 (495)
Q Consensus       232 s~n~l~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~  301 (495)
                      .....  .+...+..+..|.    .+.+.++... ..+..+. .+.+|+.|.+..+.+..........      ++++..
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~-~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~  751 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLG-SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK  751 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccc-cccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence            43322  0111122222332    2232222222 2233333 6788888888888775433222111      223333


Q ss_pred             eecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcC
Q 011044          302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL  357 (495)
Q Consensus       302 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  357 (495)
                      +...++... ..+.+....++|+.|++.+++....+......+..+..+-+..+.+
T Consensus       752 ~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~  806 (889)
T KOG4658|consen  752 VSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL  806 (889)
T ss_pred             HHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence            333333322 2233334668899999998876554444444444444433444433

>PLN03150 hypothetical protein; Provisional

Probab=99.06  E-value=3.7e-10  Score=118.37  Aligned_cols=109  Identities=33%  Similarity=0.507  Sum_probs=98.1

Q ss_pred             CCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEc
Q 011044          104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL  183 (495)
Q Consensus       104 ~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  183 (495)
                      .++.|+|++|.+.+.+|..+.. +++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|++|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4788999999999999998876 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCChhhhCc-ccccEEEecCCcCC
Q 011044          184 RQNKLQGEIPEELGNL-AELEMLWLQNNSLT  213 (495)
Q Consensus       184 ~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~  213 (495)
                      ++|.+++.+|..+... .++..+++.+|...
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccc
Confidence            9999999999988764 46778888888644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=8.5e-11  Score=105.70  Aligned_cols=142  Identities=25%  Similarity=0.241  Sum_probs=109.5

Q ss_pred             ccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCc
Q 011044          243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRK  322 (495)
Q Consensus       243 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  322 (495)
                      .+..+..|+++++++|.++ .+....- -.|.++.|++++|.+...  ..+..+++|+.|||++|.++ .+..+-..+-+
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            3445678999999999987 6665554 578999999999999733  34888999999999999887 44455557788


Q ss_pred             CCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCccccCCCc
Q 011044          323 LEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGD  391 (495)
Q Consensus       323 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~d  391 (495)
                      .+.|.+++|.+..  ...++.+-+|..||+++|+|..--.......+|.|+.+.+.+|+..+.+..+..
T Consensus       354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTK  420 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTK  420 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHH
Confidence            9999999998863  345778889999999999987322222345799999999999998776654443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=5.1e-10  Score=96.41  Aligned_cols=9  Identities=56%  Similarity=0.910  Sum_probs=3.0

Q ss_pred             CCccccccc
Q 011044          271 NLPSLQTLS  279 (495)
Q Consensus       271 ~l~~L~~L~  279 (495)
                      .+|+|+.|+
T Consensus       138 ~lP~Lk~LD  146 (175)
T PF14580_consen  138 KLPSLKVLD  146 (175)
T ss_dssp             H-TT-SEET
T ss_pred             HcChhheeC
Confidence            344444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.83  E-value=5e-10  Score=112.22  Aligned_cols=173  Identities=34%  Similarity=0.351  Sum_probs=70.7

Q ss_pred             cCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCc-hhhhcCCCC
Q 011044          148 LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP-SSIFSLSSL  226 (495)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L  226 (495)
                      +..+++|++|++++|.|+..  ..+..++.|+.|++++|.+...  ..+..++.|+.+++++|.+...-+ . +..+.++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l  188 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISL  188 (414)
T ss_pred             hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccch
Confidence            33444444444444444422  1233334444444444444311  123334444444444444442211 1 2344455


Q ss_pred             ceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCc--cccccccccceeeecccccccCCCCCCeeec
Q 011044          227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP--SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL  304 (495)
Q Consensus       227 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  304 (495)
                      +.+.+.+|.+...  ..+..+..+..+++..|.++..-+..   .+.  .|+.+++++|.+. ..+..+..+..+..|++
T Consensus       189 ~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~---~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  189 EELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN---ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL  262 (414)
T ss_pred             HHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc---cchhHHHHHHhcccCccc-cccccccccccccccch
Confidence            5555555544322  11222233333344444443111100   111  2555555555554 22234445555556666


Q ss_pred             ccccccccCCccccCCCcCCEEeCcCCcc
Q 011044          305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKL  333 (495)
Q Consensus       305 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  333 (495)
                      .+|++...  ..+.....+..+....+.+
T Consensus       263 ~~n~~~~~--~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  263 SSNRISNL--EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             hhcccccc--ccccccchHHHhccCcchh
Confidence            65555432  1123344444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=8.5e-10  Score=110.58  Aligned_cols=217  Identities=31%  Similarity=0.375  Sum_probs=150.0

Q ss_pred             CCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044          127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW  206 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  206 (495)
                      +..++.+.+..|.+.. +-..+..+.+|..|++.+|.+... ...+..+++|++|++++|.|+...  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            5566666677777663 334477888999999999988843 222677899999999999988543  367777899999


Q ss_pred             ecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCC-cccccccccceeeccCcccccccchhhhhCCcccccccccccee
Q 011044          207 LQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIP-SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF  285 (495)
Q Consensus       207 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  285 (495)
                      +++|.++..  ..+..++.|+.+++++|.+....+ . +..+.+++.+.+.+|.+...-...   .+..+..+++..|.+
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKI  220 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---HHHHHHHhhcccccc
Confidence            999998733  445568899999999998876544 2 467788888899888776221111   234555557777777


Q ss_pred             eecccccccCCCC--CCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          286 SGAIPKEIGNLTK--LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       286 ~~~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      +..-  .+..+..  |+.+++++|++. ..+..+..+..+..|++..|++...-  .+...+.+..+....+.+.
T Consensus       221 ~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  221 SKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             eecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence            5322  2223333  788889988887 33355667888888888888776432  2344556666666666654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.76  E-value=1e-08  Score=66.42  Aligned_cols=40  Identities=50%  Similarity=1.020  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHhhCCCCCCccccCCCCCC--CCCCccceeeeC
Q 011044           11 TTDQQALLVLKAHVTDDPTNFLAKNWNTS--SSFCYWTGVTCD   51 (495)
Q Consensus        11 ~~~~~~ll~~~~~~~~~~~~~l~~~w~~~--~~~c~w~gv~c~   51 (495)
                      ++|++||++||+++..+|.+.+. +|+.+  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCT-T--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccc-cCCCcCCCCCeeeccEEeC
Confidence            57999999999999666767777 99987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=1.1e-08  Score=72.26  Aligned_cols=59  Identities=31%  Similarity=0.432  Sum_probs=39.4

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT  114 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  114 (495)
                      +|++|++++|.++...+..|.++++|++|++++|.++...+..|.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            56667777777765555566667777777777777665556666666666666666665

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=1.7e-08  Score=71.33  Aligned_cols=61  Identities=41%  Similarity=0.507  Sum_probs=41.6

Q ss_pred             CCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcC
Q 011044          297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL  357 (495)
Q Consensus       297 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  357 (495)
                      |+|++|++++|+++...+..|..+++|++|++++|++....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566777777776655555666777777777777777666666677777777777777654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=6.7e-09  Score=93.61  Aligned_cols=88  Identities=25%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             HhhcCCCCCEEEcccccCCc--cCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC-CChhhhCc
Q 011044          123 FCNQMSNLESLFLKYNMFHG--KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE-IPEELGNL  199 (495)
Q Consensus       123 ~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l  199 (495)
                      +...++.++.++|.+|.++.  .+...+.++|+|++|+++.|++...+...-....+|+.|.|.+..+... ....+..+
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            33446666667777666654  2334455666666666666666533222112344566666655544322 11223445


Q ss_pred             ccccEEEecCC
Q 011044          200 AELEMLWLQNN  210 (495)
Q Consensus       200 ~~L~~L~l~~n  210 (495)
                      |.++.|.++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            55555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.2e-09  Score=98.36  Aligned_cols=177  Identities=22%  Similarity=0.222  Sum_probs=107.5

Q ss_pred             CCCEEEccCCCCCCC-CChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc-CCCC-CCccccccccccee
Q 011044          177 KLTRLNLRQNKLQGE-IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN-FTGI-IPSSIGNLSSLQKL  253 (495)
Q Consensus       177 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~~~~L~~L  253 (495)
                      .|++|||+...++.. .-.-++.+.+|+.|.+.++++...+...++...+|+.|+++.+. ++.. ....+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477788877766521 12234567778888888888877777777777888888887764 2211 11235677788888


Q ss_pred             eccCcccccccchhh-hhCCcccccccccccee--e-ecccccccCCCCCCeeeccccc-ccccCCccccCCCcCCEEeC
Q 011044          254 YLSDNQLSGELPANI-GNNLPSLQTLSLYVNDF--S-GAIPKEIGNLTKLTDLYLDQNK-LQGKIPHEIGNLRKLEWLML  328 (495)
Q Consensus       254 ~l~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l--~-~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l  328 (495)
                      ++++|.+.......+ ..--++|+.|+++++.-  . ..+..-...+++|..|||++|. ++......|-.++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888876653332222 11225677777777632  1 1122223566778888887764 33333345566777888888


Q ss_pred             cCCcccccCCc---CccCCCCCcEEEccCC
Q 011044          329 SHNKLVGVVPA---PIFNLSTLISLQLHNN  355 (495)
Q Consensus       329 ~~n~l~~~~~~---~~~~l~~L~~L~l~~n  355 (495)
                      +.|..  .+|.   .+...|+|.+|++.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77753  2332   3456677777777665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.9e-09  Score=97.09  Aligned_cols=202  Identities=23%  Similarity=0.230  Sum_probs=134.4

Q ss_pred             CCeEEEEcCCCCCccc-CchhccCC-CCCCEEeCcCCcCCcc-CCccccCCCCCcEEEccCCcccccCChhHhhcCCCCC
Q 011044           55 HRVAALNISGLNLTGT-IPSELANL-SSLQALDLSFNWFYGS-IPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE  131 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~-~~~~l~~l-~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~  131 (495)
                      ..|..+.+...-.... +.+.+.-+ +.|++|||+...|+.. .-.-+..|.+|+.|.+.++.+.+.+...+.. -.+|+
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~  237 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLV  237 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccce
Confidence            5677777764433322 22333322 3588899988877643 2234677889999999999888777777766 78899


Q ss_pred             EEEccccc-CCcc-CCcccCCCCCCCEEEcccCcCccccCcc-cc-CCCCCCEEEccCCCCC---CCCChhhhCcccccE
Q 011044          132 SLFLKYNM-FHGK-IPSTLSSCKQLRELSLSSNYFSGTIPKE-IG-NLTKLTRLNLRQNKLQ---GEIPEELGNLAELEM  204 (495)
Q Consensus       132 ~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~-~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~  204 (495)
                      .|+++.+. ++.. ..-.+.+|+.|..|+++.|.+....... +. --++|+.|+++++.-.   ..+..-...+++|..
T Consensus       238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence            99998874 4421 2224578889999999988765332211 11 1257888899887421   112222357899999


Q ss_pred             EEecCCc-CCCcCchhhhcCCCCceeeCCCCcCCCCCCc---ccccccccceeeccCcc
Q 011044          205 LWLQNNS-LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPS---SIGNLSSLQKLYLSDNQ  259 (495)
Q Consensus       205 L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~~~~L~~L~l~~n~  259 (495)
                      ||++.|. ++......|.+++.|++|.++.|..  ++|.   .+...+.|.+|++.++-
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            9999864 4444456678899999999999863  3443   35677899999988763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=3e-09  Score=106.56  Aligned_cols=126  Identities=33%  Similarity=0.426  Sum_probs=74.6

Q ss_pred             CCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCCh-hhhCcccccEEEe
Q 011044          129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE-ELGNLAELEMLWL  207 (495)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l  207 (495)
                      .|.+.++++|.+. .+..++.-++.|+.|+|++|+++..  ..+..+++|++|||++|.+. .+|. ....+. |+.|++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            3555566666665 4445566666777777777777633  35666777777777777665 3332 122333 677777


Q ss_pred             cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCC-CcccccccccceeeccCcccc
Q 011044          208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGII-PSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++|.++.  -..+.++.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+.
T Consensus       240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7776652  234566667777777777655431 122445566667777776654

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=98.46  E-value=2.1e-07  Score=90.85  Aligned_cols=93  Identities=24%  Similarity=0.293  Sum_probs=71.1

Q ss_pred             hhhhhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044          375 LFLWEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC  453 (495)
Q Consensus       375 L~l~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~  453 (495)
                      ...+|....++.+.|+|||||||+|.|++| |+.|.     ++++..+.++..-++.-+.               ..+.|
T Consensus       370 WtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py-----~~msn~ev~~~le~GyRlp---------------~P~~C  429 (468)
T KOG0197|consen  370 WTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPY-----PGMSNEEVLELLERGYRLP---------------RPEGC  429 (468)
T ss_pred             ecCHHHHhhCCcccccceeehhhhHHHHhccCCCCC-----CCCCHHHHHHHHhccCcCC---------------CCCCC
Confidence            345677788899999999999999999998 45553     4677777666554433111               13357


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ...+.+|-..|..++|.+|||+......++++..
T Consensus       430 P~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  430 PDEVYELMKSCWHEDPEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             CHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhh
Confidence            8889999999999999999999988777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=8.1e-09  Score=103.52  Aligned_cols=180  Identities=27%  Similarity=0.281  Sum_probs=107.5

Q ss_pred             ChhhhCcccccEEEecCCcCCCcCchhhhcCC-CCceeeCCCCcCC----------CCCCcccccccccceeeccCcccc
Q 011044          193 PEELGNLAELEMLWLQNNSLTGTIPSSIFSLS-SLLNLDLSLNNFT----------GIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       193 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~----------~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      |-.+..+.+|+.|.+.++.+..  ...+..+. .|++|.-.+ .+.          |.+..++ .+..|...+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            5567788899999999998762  22222222 344442221 111          1111111 1235667777777775


Q ss_pred             cccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCc-cccCCCcCCEEeCcCCcccccCCcC
Q 011044          262 GELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNKLVGVVPAP  340 (495)
Q Consensus       262 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~  340 (495)
                       .+...+- -++.++.|+|++|+++..  ..+..+++|++|||++|.++ .+|. ....|. |..|.+++|.++..  ..
T Consensus       178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence             3434333 467888888888888643  36778888888888888877 3443 223344 88888888877632  34


Q ss_pred             ccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044          341 IFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG  384 (495)
Q Consensus       341 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  384 (495)
                      +.++.+|+.||+++|-+.+.-.......+..|+.|.+.+|+.-+
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            66788888888888877644322222334556666665555433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.37  E-value=1.6e-07  Score=83.80  Aligned_cols=138  Identities=25%  Similarity=0.244  Sum_probs=83.3

Q ss_pred             CCCCCCEEEccCCCCCCCCC----hhhhCcccccEEEecCCcCCCc-----CchhhhcCCCCceeeCCCCcCCCC----C
Q 011044          174 NLTKLTRLNLRQNKLQGEIP----EELGNLAELEMLWLQNNSLTGT-----IPSSIFSLSSLLNLDLSLNNFTGI----I  240 (495)
Q Consensus       174 ~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~  240 (495)
                      .-+.|+......|++..-..    ..+..-.+|+.+.+..|.|...     +...++.+.+|+.|++..|.++-.    +
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            34677777777777652211    1223335677788877776532     112344567888888888876632    2


Q ss_pred             CcccccccccceeeccCcccccccchhhhh-----CCccccccccccceeeeccccc-------ccCCCCCCeeeccccc
Q 011044          241 PSSIGNLSSLQKLYLSDNQLSGELPANIGN-----NLPSLQTLSLYVNDFSGAIPKE-------IGNLTKLTDLYLDQNK  308 (495)
Q Consensus       241 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~-------l~~l~~L~~L~L~~n~  308 (495)
                      ...+..++.|+.|.+.+|-++......+..     ..|+|..|...+|...+.+...       -..+|-|..|.+.+|+
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            233456677888888888766444433322     3467788888877654322211       1445677778888888


Q ss_pred             ccc
Q 011044          309 LQG  311 (495)
Q Consensus       309 i~~  311 (495)
                      +..
T Consensus       315 ~~E  317 (388)
T COG5238         315 IKE  317 (388)
T ss_pred             chh
Confidence            763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=1.9e-07  Score=83.31  Aligned_cols=189  Identities=24%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             ccCCCCCCCEEEcccCcCccccCcc----ccCCCCCCEEEccCCCCCCC----CChh---------hhCcccccEEEecC
Q 011044          147 TLSSCKQLRELSLSSNYFSGTIPKE----IGNLTKLTRLNLRQNKLQGE----IPEE---------LGNLAELEMLWLQN  209 (495)
Q Consensus       147 ~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~~---------l~~l~~L~~L~l~~  209 (495)
                      .+-+||+|+..+|+.|.+....|..    ++.-+.|.+|.+++|.+.-.    +-.+         ..+-|.|+......
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3456677777777777666544433    34456677777777765411    1111         22446799999998


Q ss_pred             CcCCCcCc----hhhhcCCCCceeeCCCCcCCCCC-----CcccccccccceeeccCcccccccchhhh---hCCccccc
Q 011044          210 NSLTGTIP----SSIFSLSSLLNLDLSLNNFTGII-----PSSIGNLSSLQKLYLSDNQLSGELPANIG---NNLPSLQT  277 (495)
Q Consensus       210 n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~  277 (495)
                      |++..-..    ..+..-.+|+++.+..|.|....     -..+..+.+|+.|++.+|.++-.....++   ...+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            88762211    12223358999999999876431     12345678999999999988744333222   24567899


Q ss_pred             cccccceeeeccccc----c--cCCCCCCeeecccccccccCCcc-------ccCCCcCCEEeCcCCcccc
Q 011044          278 LSLYVNDFSGAIPKE----I--GNLTKLTDLYLDQNKLQGKIPHE-------IGNLRKLEWLMLSHNKLVG  335 (495)
Q Consensus       278 L~L~~n~l~~~~~~~----l--~~l~~L~~L~L~~n~i~~~~~~~-------l~~l~~L~~L~l~~n~l~~  335 (495)
                      |.+..|-++......    +  ...|+|..|-..+|.+.+.+...       -..++-|..|.+.+|++..
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            999999876533322    1  33578889999998776532221       1356778888888898763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.8e-07  Score=84.53  Aligned_cols=186  Identities=23%  Similarity=0.209  Sum_probs=90.5

Q ss_pred             CCCCCCEEEccCCCCCC--CCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC-CCccccccccc
Q 011044          174 NLTKLTRLNLRQNKLQG--EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI-IPSSIGNLSSL  250 (495)
Q Consensus       174 ~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L  250 (495)
                      .++.++.++|.+|.++.  .+...+.++|.|++|+++.|++...+...-....+|+.|.|.+..+.-. ....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34667777777777662  2223345777777777777777633222113455677777766554321 22334556666


Q ss_pred             ceeeccCccccc--ccchhhhhCCccccccccccceeee--cccccccCCCCCCeeeccccccccc-CCccccCCCcCCE
Q 011044          251 QKLYLSDNQLSG--ELPANIGNNLPSLQTLSLYVNDFSG--AIPKEIGNLTKLTDLYLDQNKLQGK-IPHEIGNLRKLEW  325 (495)
Q Consensus       251 ~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~  325 (495)
                      ++|.++.|.+.-  .........-+.+++|+...|...-  .....-.-+|++..+.+..|++.+. ....+..++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            777776663320  0011111111233444433332210  0001112245566666666655432 1123344555556


Q ss_pred             EeCcCCccccc-CCcCccCCCCCcEEEccCCcCce
Q 011044          326 LMLSHNKLVGV-VPAPIFNLSTLISLQLHNNSLSG  359 (495)
Q Consensus       326 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~  359 (495)
                      |+|+.+++... ....+..++.|..|.++++++..
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            66666655431 11234456666666666666553

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.27  E-value=9e-07  Score=77.62  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|++||+.|......-...+..++....+....   +...   .     ........+.++..
T Consensus        78 ~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~-----~~~~~~~~~~~~i~  146 (176)
T smart00750       78 GQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPR---DRSN---L-----ESVSAARSFADFMR  146 (176)
T ss_pred             CCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCcc---cccc---H-----HHHHhhhhHHHHHH
Confidence            44556789999999999999999999643221111222222211111000   0000   0     00011124788999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.|+++.+..+..+
T Consensus       147 ~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      147 VCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             HHHhcccccccCHHHHHHHHHHHHHH
Confidence            99999999999999999888766544

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=98.27  E-value=5.7e-07  Score=87.34  Aligned_cols=89  Identities=15%  Similarity=0.343  Sum_probs=61.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.|+|||||||++-|++||+.|+.....     .+-+......+.    .+.+          ...|...+..+..
T Consensus       220 ~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~-----~~~~~~v~~~~~----Rp~~----------p~~~~~~l~~l~~  280 (362)
T KOG0192|consen  220 KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP-----VQVASAVVVGGL----RPPI----------PKECPPHLSSLME  280 (362)
T ss_pred             CCcCCccchhhhHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhcCC----CCCC----------CccCCHHHHHHHH
Confidence            45688999999999999999999999654332     121111111110    0000          1124555777778


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETRCL  490 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~~  490 (495)
                      .|...+|..||++.+++..|+.+...+.
T Consensus       281 ~CW~~dp~~RP~f~ei~~~l~~~~~~~~  308 (362)
T KOG0192|consen  281 RCWLVDPSRRPSFLEIVSRLESIMSHIS  308 (362)
T ss_pred             HhCCCCCCcCCCHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999876554

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.20  E-value=6e-07  Score=85.36  Aligned_cols=99  Identities=15%  Similarity=0.241  Sum_probs=59.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC-CCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS-ISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~-~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++||+.|....-..-.....+...... ....+..+.....      .....+...+.++
T Consensus       183 ~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l  256 (283)
T cd05080         183 KENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRL------PCPKNCPQEVYIL  256 (283)
T ss_pred             cccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCC------CCCCCCCHHHHHH
Confidence            34556789999999999999999998854311100000000000000 0011111111100      0012345568899


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ...|.+.+|.+||+|.+++++|+.++
T Consensus       257 i~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         257 MKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             HHHHhccChhhCCCHHHHHHHHHHhh
Confidence            99999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.19  E-value=1.3e-06  Score=82.97  Aligned_cols=90  Identities=21%  Similarity=0.339  Sum_probs=59.0

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCC----------CHHHHHHHHhCCCcceeeeccccccccccccchh
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEM----------TLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKE  451 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~----------~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~  451 (495)
                      .....+.++|+||||+++.|++||+.|.........          ....+++..-...       +.        ....
T Consensus       185 ~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~  249 (284)
T cd05038         185 RTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGE-------RL--------PRPP  249 (284)
T ss_pred             ccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCC-------cC--------CCCc
Confidence            344667789999999999999999988653221111          1111111111100       00        0111


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .+...+.++...|...+|.+||+|.||+++|+.|+
T Consensus       250 ~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         250 SCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             cCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence            33456889999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=1.2e-07  Score=75.94  Aligned_cols=104  Identities=26%  Similarity=0.330  Sum_probs=53.4

Q ss_pred             CEEeCcCCcCCccCCc---cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044           82 QALDLSFNWFYGSIPS---SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS  158 (495)
Q Consensus        82 ~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (495)
                      -.++|++|++. .+++   .+.....|+..++++|.+ ..+|..+....+.+++|++++|.++ .+|..+..++.|+.|+
T Consensus        30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhcccccchhh-HHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            34455555443 2222   233334455556666655 4555555554555666666666555 4455555555555555


Q ss_pred             cccCcCccccCccccCCCCCCEEEccCCCCC
Q 011044          159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      ++.|.+. ..|..+..+.++-+|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            5555554 34444444555555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.17  E-value=6.8e-08  Score=91.23  Aligned_cols=293  Identities=20%  Similarity=0.120  Sum_probs=160.5

Q ss_pred             CCCEEeCcCCcCCcc--CCccccCCCCCcEEEccCCcc-cccCChhHhhcCCCCCEEEccccc-CCccCCc-ccCCCCCC
Q 011044           80 SLQALDLSFNWFYGS--IPSSIFNMSSLLSIYFNNNTL-FGELPPNFCNQMSNLESLFLKYNM-FHGKIPS-TLSSCKQL  154 (495)
Q Consensus        80 ~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~-~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L  154 (495)
                      .|+.|.++++.-.+.  .-....+++++++|.+.++.. ++..-..+...+++|++|++..|. ++..... .-..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            466677766643222  112344577777777777642 333334555567777777777643 3332222 22456777


Q ss_pred             CEEEcccCc-Cccc-cCccccCCCCCCEEEccCCCCCCCCChhh----hCcccccEEEecCCc-CCCcCc-hhhhcCCCC
Q 011044          155 RELSLSSNY-FSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEEL----GNLAELEMLWLQNNS-LTGTIP-SSIFSLSSL  226 (495)
Q Consensus       155 ~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L  226 (495)
                      .+|+++.+. +++. +...+.++..++.+.+.+|.-.  -.+.+    +.+..+.++++..|. ++.... ..-..+..|
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            777777652 3221 1112334555666655554311  11222    233445555554442 222111 111235677


Q ss_pred             ceeeCCCCcCCCC-CCccc-ccccccceeeccCcc-cccccchhhhhCCccccccccccceee--ecccccccCCCCCCe
Q 011044          227 LNLDLSLNNFTGI-IPSSI-GNLSSLQKLYLSDNQ-LSGELPANIGNNLPSLQTLSLYVNDFS--GAIPKEIGNLTKLTD  301 (495)
Q Consensus       227 ~~L~Ls~n~l~~~-~~~~l-~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~  301 (495)
                      +.+..+++...+. +...+ .++++|+.+.++.++ ++..-...++.+.+.|+.+++..+...  +.+...-.+++.|+.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            7887777653222 11222 466788888888874 554444566667888888888877542  223334466788888


Q ss_pred             eecccccccccC-----CccccCCCcCCEEeCcCCccc-ccCCcCccCCCCCcEEEccCCcCceecCC-CCCCCCCChhh
Q 011044          302 LYLDQNKLQGKI-----PHEIGNLRKLEWLMLSHNKLV-GVVPAPIFNLSTLISLQLHNNSLSGSLPS-SADVPLPNLEE  374 (495)
Q Consensus       302 L~L~~n~i~~~~-----~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~  374 (495)
                      +.+++|......     ...-.....|+.+.+++++.. +.....+..+++|+.+++.+++--...+. .....+|+++.
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v  456 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV  456 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence            888887543221     112234567888889888643 44445566788899998888864322221 12334565554

>PHA02988 hypothetical protein; Provisional

Probab=98.16  E-value=2.2e-06  Score=81.50  Aligned_cols=84  Identities=19%  Similarity=0.371  Sum_probs=58.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|||||||++.|++||+.|.+.     .+...+.+........    ..+          ...+...+.++...
T Consensus       197 ~~~~~k~Di~SlGvil~el~~g~~Pf~~-----~~~~~~~~~i~~~~~~----~~~----------~~~~~~~l~~li~~  257 (283)
T PHA02988        197 SEYTIKDDIYSLGVVLWEIFTGKIPFEN-----LTTKEIYDLIINKNNS----LKL----------PLDCPLEIKCIVEA  257 (283)
T ss_pred             ccccchhhhhHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHhcCCC----CCC----------CCcCcHHHHHHHHH
Confidence            3567899999999999999999999653     2223333332221110    000          00233447788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      |.+.+|.+||+|.|+++.|+..+
T Consensus       258 cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        258 CTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             HhcCCcccCcCHHHHHHHHHHHH
Confidence            99999999999999999998765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.15  E-value=8e-08  Score=90.74  Aligned_cols=279  Identities=23%  Similarity=0.168  Sum_probs=152.4

Q ss_pred             CCcEEEccCCcccccCC-hhHhhcCCCCCEEEccccc-CCccCCccc-CCCCCCCEEEcccC-cCccccCc-cccCCCCC
Q 011044          104 SLLSIYFNNNTLFGELP-PNFCNQMSNLESLFLKYNM-FHGKIPSTL-SSCKQLRELSLSSN-YFSGTIPK-EIGNLTKL  178 (495)
Q Consensus       104 ~L~~L~l~~n~~~~~~p-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L  178 (495)
                      .|+.|.+.++.-.+.-+ ..+...++++++|.+.+|. +++..-..+ ..+++|++|++..| .++..... -...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46777777776544333 3445568888888887775 332222222 35678888888774 34433222 22357788


Q ss_pred             CEEEccCCC-CCCCC-ChhhhCcccccEEEecCCcCCCc--CchhhhcCCCCceeeCCCCc-CCCCCC-cccccccccce
Q 011044          179 TRLNLRQNK-LQGEI-PEELGNLAELEMLWLQNNSLTGT--IPSSIFSLSSLLNLDLSLNN-FTGIIP-SSIGNLSSLQK  252 (495)
Q Consensus       179 ~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~-l~~~~~-~~l~~~~~L~~  252 (495)
                      ++|+++++. +++.. -.-..++..++.+.+.||.-.+.  +-..-+.+..+.++++..|. +++..- ..-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            888888774 33321 12234555666666666532211  11111234455666655553 222211 11134667788


Q ss_pred             eeccCcc-cccccchhhhhCCccccccccccce-eeeccc-ccccCCCCCCeeeccccccccc--CCccccCCCcCCEEe
Q 011044          253 LYLSDNQ-LSGELPANIGNNLPSLQTLSLYVND-FSGAIP-KEIGNLTKLTDLYLDQNKLQGK--IPHEIGNLRKLEWLM  327 (495)
Q Consensus       253 L~l~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~  327 (495)
                      |+.+++. +++..-..++++.++|+.|.++.++ ++..-- ..-.+.+.|+.+++..+.....  +.+.-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            8877763 3333334566677888888888775 332111 1124557788888877753321  222234678888888


Q ss_pred             CcCCcccccC-----CcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCC
Q 011044          328 LSHNKLVGVV-----PAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGR  382 (495)
Q Consensus       328 l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~  382 (495)
                      +++|......     ...-.....|..+.+++++.....-......+++|+.+++.++..
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            8887543211     112235567788888888765332222333566777766666553

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=98.15  E-value=4.8e-07  Score=84.89  Aligned_cols=84  Identities=20%  Similarity=0.464  Sum_probs=54.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |+......+.++||||||++++|++| |+.|..     +.+..++............               ...+...+
T Consensus       175 E~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  234 (259)
T PF07714_consen  175 EVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFS-----DYDNEEIIEKLKQGQRLPI---------------PDNCPKDI  234 (259)
T ss_dssp             HHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTT-----TSCHHHHHHHHHTTEETTS---------------BTTSBHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-----cccccccccccccccccee---------------ccchhHHH
Confidence            44334457889999999999999999 567743     2244455444432221110               11234457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .++...|.+.+|.+||+|.++++.|
T Consensus       235 ~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  235 YSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             HHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHhcC
Confidence            8999999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=3e-06  Score=87.37  Aligned_cols=90  Identities=22%  Similarity=0.427  Sum_probs=66.7

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.-..++.++++|||||||+|-|+|| |+.|....     +=.+-++..-..+++.               ..+.|...+
T Consensus       675 EsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~gl-----Sn~EVIe~i~~g~lL~---------------~Pe~CP~~v  734 (774)
T KOG1026|consen  675 ESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGL-----SNQEVIECIRAGQLLS---------------CPENCPTEV  734 (774)
T ss_pred             HHhhcCcccchhhhhhhhhhhhhhhccccCccccc-----chHHHHHHHHcCCccc---------------CCCCCCHHH
Confidence            55567899999999999999999998 67886432     2112222222222221               244789999


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..+-+.|..+.|.+||++.|+-..|+.....
T Consensus       735 Y~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~  765 (774)
T KOG1026|consen  735 YSLMLECWNENPKRRPSFKEIHSRLQAWAQA  765 (774)
T ss_pred             HHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999876543

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.06  E-value=3.2e-06  Score=80.28  Aligned_cols=86  Identities=23%  Similarity=0.421  Sum_probs=58.3

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|||||||++.|++| |+.|......  ..+..+++.   .....+               ...+...+
T Consensus       196 E~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~--~~~~~~i~~---~~~~~~---------------~~~~~~~~  255 (283)
T cd05048         196 EAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN--QEVIEMIRS---RQLLPC---------------PEDCPARV  255 (283)
T ss_pred             HHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHc---CCcCCC---------------cccCCHHH
Confidence            44444567788999999999999998 8888643221  122222221   111000               11234558


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      .++...|++.+|.+||++.||++.|+.
T Consensus       256 ~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         256 YALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=5.9e-07  Score=72.02  Aligned_cols=84  Identities=35%  Similarity=0.446  Sum_probs=45.9

Q ss_pred             CCCCCEEEcccCcCccccCcccc-CCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCcee
Q 011044          151 CKQLRELSLSSNYFSGTIPKEIG-NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNL  229 (495)
Q Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  229 (495)
                      ...|...++++|.+. ..|..|. .++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            344455555555555 2333333 3345566666666655 45555666666666666666655 445555556666666


Q ss_pred             eCCCCcCC
Q 011044          230 DLSLNNFT  237 (495)
Q Consensus       230 ~Ls~n~l~  237 (495)
                      +..+|.+.
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            66655544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=1.5e-06  Score=91.33  Aligned_cols=179  Identities=19%  Similarity=0.209  Sum_probs=99.3

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCc------------cc---cCCCCCcEEEccCCccc-ccC
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPS------------SI---FNMSSLLSIYFNNNTLF-GEL  119 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~------------~l---~~l~~L~~L~l~~n~~~-~~~  119 (495)
                      .++.+++.+..+.......+.... |++|.|.+-......-.            .+   ..-.+|++|+++|.... ..-
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            577777777666554444444444 77777755322211100            00   01256777777776432 334


Q ss_pred             ChhHhhcCCCCCEEEcccccCCc-cCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC-CCChhhh
Q 011044          120 PPNFCNQMSNLESLFLKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG-EIPEELG  197 (495)
Q Consensus       120 p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~  197 (495)
                      |..++..+|+|++|.+.+-.+.. ..-....++|+|..||+++++++..  .+++++++|+.|.+.+-.+.. ..-..+-
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            45566667777777777755432 2223345677777777777777633  566777777777776655542 1223455


Q ss_pred             CcccccEEEecCCcCCCcC--c----hhhhcCCCCceeeCCCCcCC
Q 011044          198 NLAELEMLWLQNNSLTGTI--P----SSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       198 ~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ++++|+.||+|........  .    +.-..+|+|+.||.|++.+.
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            6777777777765433111  0    01123566666666655544

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.03  E-value=5.6e-06  Score=79.05  Aligned_cols=86  Identities=19%  Similarity=0.373  Sum_probs=58.4

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|....     +....++..........               ...+...+.++
T Consensus       198 ~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l  257 (291)
T cd05094         198 MYRKFTTESDVWSFGVILWEIFTYGKQPWFQL-----SNTEVIECITQGRVLER---------------PRVCPKEVYDI  257 (291)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHhCCCCCCC---------------CccCCHHHHHH
Confidence            34456778999999999999999 88885432     11222222111111100               01123447789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ...|+..+|.+||+|.+|+++|+.+..
T Consensus       258 i~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         258 MLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             HHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.03  E-value=3.2e-06  Score=80.19  Aligned_cols=86  Identities=19%  Similarity=0.387  Sum_probs=59.3

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|.+..  ....+..+++......     .             ...+...+.++.
T Consensus       193 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~li  252 (280)
T cd05043         193 NKEYSSASDVWSFGVLLWELMTLGQTPYVEI--DPFEMAAYLKDGYRLA-----Q-------------PINCPDELFAVM  252 (280)
T ss_pred             cCCCCchhhHHHhHHHHHHHhcCCCCCcCcC--CHHHHHHHHHcCCCCC-----C-------------CCcCCHHHHHHH
Confidence            3446778999999999999999 98886532  1123333333211100     0             011233477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|...+|.+||++.+|++.|+.+.++
T Consensus       253 ~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         253 ACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             HHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.01  E-value=2e-06  Score=81.71  Aligned_cols=99  Identities=14%  Similarity=0.281  Sum_probs=57.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccc--cccccchhhHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWK--DKHFMTKEQCMSFVFN  459 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~--~~~~~~~~~~~~~~~~  459 (495)
                      ..+..+.++|+|+||++++|+++|..|.....      ..|.+..-...........+....  .........+...+.+
T Consensus       184 ~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (284)
T cd05081         184 TESKFSVASDVWSFGVVLYELFTYSDKSCSPP------AEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYA  257 (284)
T ss_pred             ccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc------hhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHH
Confidence            34456778999999999999999876642210      111111111110000000000000  0000011123456889


Q ss_pred             HHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      +...|++.+|.+||++.|++++|+.++
T Consensus       258 li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         258 IMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             HHHHHccCChhhCCCHHHHHHHHHhcC
Confidence            999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=97.98  E-value=4.6e-06  Score=79.11  Aligned_cols=89  Identities=13%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++||||||+++.|++| |+.|+.....  ..+.+++...   .  ....+             ..|...+
T Consensus       181 E~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~---~--~~~~~-------------~~~~~~~  240 (279)
T cd05111         181 ESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRP--HEVPDLLEKG---E--RLAQP-------------QICTIDV  240 (279)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHCC---C--cCCCC-------------CCCCHHH
Confidence            33334556789999999999999998 8888643221  1122232211   0  00011             1133446


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..+...|...+|.+||++.|+++.+..+..
T Consensus       241 ~~li~~c~~~~p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         241 YMVMVKCWMIDENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence            778889999999999999999999987653

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=97.98  E-value=4.3e-06  Score=78.22  Aligned_cols=88  Identities=18%  Similarity=0.337  Sum_probs=60.4

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|+||||+++.|++| |+.|++...  +..+..++....+   ...               ...+...+
T Consensus       168 E~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~--~~~~~~~~~~~~~---~~~---------------~~~~~~~l  227 (257)
T cd05060         168 ECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK--GAEVIAMLESGER---LPR---------------PEECPQEI  227 (257)
T ss_pred             HHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHHcCCc---CCC---------------CCCCCHHH
Confidence            44445567789999999999999998 888865421  2233333322111   000               11223457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .++...|...+|.+||++.++++.|+.+.
T Consensus       228 ~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         228 YSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             HHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            78999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=97.98  E-value=7.5e-06  Score=76.86  Aligned_cols=87  Identities=20%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++||||||+++.|++| |+.|...     .+..++.+.......     ...          .+.+...+
T Consensus       175 E~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~-----~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~  234 (263)
T cd05052         175 ESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG-----IDLSQVYELLEKGYR-----MER----------PEGCPPKV  234 (263)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHCCCC-----CCC----------CCCCCHHH
Confidence            33344556778999999999999998 8877432     233333333221110     000          01123447


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .++...|...+|.+||+|.+++++|+.+
T Consensus       235 ~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         235 YELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             HHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            7889999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=97.98  E-value=8.4e-06  Score=76.56  Aligned_cols=87  Identities=15%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|+++|+.|...   +..++.++.+.........+              ..+.....+.++..
T Consensus       180 ~~~~~~~~Di~slG~il~~l~~g~~p~~~---~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~  242 (267)
T cd08224         180 ENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLCKKIEKCDYPPL--------------PADHYSEELRDLVS  242 (267)
T ss_pred             cCCCCchhcHHHHHHHHHHHHHCCCCccc---CCccHHHHHhhhhcCCCCCC--------------ChhhcCHHHHHHHH
Confidence            44567789999999999999999998532   23454444433222111000              01112334778889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|+..+|.+||++.+++++++.+.
T Consensus       243 ~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         243 RCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             HHcCCCcccCCCHHHHHHHHHHhc
Confidence            999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=97.97  E-value=4.3e-06  Score=78.72  Aligned_cols=83  Identities=17%  Similarity=0.347  Sum_probs=57.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|....     +-.++.+........    +           ...++...+.+++
T Consensus       184 ~~~~~~~~Dv~slG~il~ell~~g~~p~~~~-----~~~~~~~~i~~~~~~----~-----------~~~~~~~~~~~li  243 (268)
T cd05063         184 YRKFTSASDVWSFGIVMWEVMSFGERPYWDM-----SNHEVMKAINDGFRL----P-----------APMDCPSAVYQLM  243 (268)
T ss_pred             cCCcChHhHHHHHHHHHHHHHhCCCCCCCcC-----CHHHHHHHHhcCCCC----C-----------CCCCCCHHHHHHH
Confidence            3456778999999999999998 99996432     112333322111000    0           0112344578999


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|.+.+|.+||+|.+|++.|+++
T Consensus       244 ~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         244 LQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HHHcCCCcccCcCHHHHHHHHHhh
Confidence            999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=97.97  E-value=6.9e-06  Score=80.29  Aligned_cols=85  Identities=16%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|....-.    -..+.+.......     ...          ...+...+.++.
T Consensus       250 ~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~----~~~~~~~~~~~~~-----~~~----------~~~~~~~l~~li  310 (338)
T cd05102         250 DKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI----NEEFCQRLKDGTR-----MRA----------PENATPEIYRIM  310 (338)
T ss_pred             cCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCc----cHHHHHHHhcCCC-----CCC----------CCCCCHHHHHHH
Confidence            4456788999999999999997 8888543111    1112221111110     000          001223477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..|...+|.+||+|.|++++|+.+.
T Consensus       311 ~~cl~~dp~~RPs~~el~~~l~~~~  335 (338)
T cd05102         311 LACWQGDPKERPTFSALVEILGDLL  335 (338)
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=97.96  E-value=7.6e-06  Score=76.70  Aligned_cols=89  Identities=18%  Similarity=0.291  Sum_probs=58.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |+......+.++||||||+++.|+++|..|...    ..+....++.........               ..+.+...+.
T Consensus       172 E~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  232 (262)
T cd05058         172 ESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP----DVDSFDITVYLLQGRRLL---------------QPEYCPDPLY  232 (262)
T ss_pred             hHhccCccchHHHHHHHHHHHHHHHcCCCCCCC----CCCHHHHHHHHhcCCCCC---------------CCCcCCHHHH
Confidence            333345567899999999999999997655321    122223333222211000               0011233577


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ++...|...+|.+||++.|++++++.+.
T Consensus       233 ~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         233 EVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             HHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            8999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=97.96  E-value=9.4e-06  Score=76.32  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=58.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|++||+.|...   +..+...+........     .+...         .......+.++..
T Consensus       180 ~~~~~~~~Di~slG~~l~el~~g~~p~~~---~~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~~~~~li~  242 (267)
T cd08228         180 ENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLFSLCQKIEQCD-----YPPLP---------TEHYSEKLRELVS  242 (267)
T ss_pred             cCCCCchhhHHHHHHHHHHHhcCCCCCcc---ccccHHHHHHHHhcCC-----CCCCC---------hhhcCHHHHHHHH
Confidence            34456789999999999999999999532   2334444443322111     11110         0112234677888


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|...+|.+||++.+|++.++.++
T Consensus       243 ~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         243 MCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             HHCCCCcccCcCHHHHHHHHHHhc
Confidence            999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=97.95  E-value=4.5e-06  Score=79.66  Aligned_cols=86  Identities=23%  Similarity=0.389  Sum_probs=57.3

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|...     ....+++..........     .          ...+...+.++
T Consensus       202 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~  261 (290)
T cd05045         202 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPG-----IAPERLFNLLKTGYRME-----R----------PENCSEEMYNL  261 (290)
T ss_pred             ccCCcchHhHHHHHHHHHHHHHhcCCCCCCC-----CCHHHHHHHHhCCCCCC-----C----------CCCCCHHHHHH
Confidence            34456788999999999999999 8888542     12222222111110000     0          01123347789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ...|.+.+|.+||+|.++++.|+.+-.
T Consensus       262 i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         262 MLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             HHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            999999999999999999999988643

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=2.9e-06  Score=89.17  Aligned_cols=151  Identities=24%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             CCCCEEeCcCCcC-CccCCcccc-CCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044           79 SSLQALDLSFNWF-YGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE  156 (495)
Q Consensus        79 ~~L~~L~L~~n~l-~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (495)
                      .+|++|++++... ....|..++ .+|.|+.|.+.+-.+...--..++.++|+|..||+++++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            6799999988643 223333444 4899999999997775444456777899999999999998743  67889999999


Q ss_pred             EEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCC--C----hhhhCcccccEEEecCCcCCCcCchhh-hcCCCCce
Q 011044          157 LSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEI--P----EELGNLAELEMLWLQNNSLTGTIPSSI-FSLSSLLN  228 (495)
Q Consensus       157 L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~  228 (495)
                      |.+.+=.+.. ..-..+..+++|+.||+|........  .    +.-..+|+|+.||.+++.+...+.+.+ ..-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9988755542 22245678999999999987654221  1    112458999999999988775544333 23455555


Q ss_pred             eeC
Q 011044          229 LDL  231 (495)
Q Consensus       229 L~L  231 (495)
                      +.+
T Consensus       280 i~~  282 (699)
T KOG3665|consen  280 IAA  282 (699)
T ss_pred             hhh
Confidence            543

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=97.93  E-value=7.5e-06  Score=79.99  Aligned_cols=89  Identities=17%  Similarity=0.242  Sum_probs=58.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++|||||||++.|++| |+.|+......     ...............+              ......+
T Consensus       245 E~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~--------------~~~~~~~  305 (337)
T cd05054         245 ESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQID-----EEFCRRLKEGTRMRAP--------------EYATPEI  305 (337)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCcc-----HHHHHHHhccCCCCCC--------------ccCCHHH
Confidence            33344567889999999999999998 88886432111     1111111111100000              0122347


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .+++..|.+.+|.+||++.|+++.|+.+-
T Consensus       306 ~~l~~~cl~~~p~~RPs~~ell~~l~~~~  334 (337)
T cd05054         306 YSIMLDCWHNNPEDRPTFSELVEILGDLL  334 (337)
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            88999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=97.93  E-value=9.2e-06  Score=76.61  Aligned_cols=84  Identities=20%  Similarity=0.350  Sum_probs=56.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|+..     .+..+..+........+.               ...+...+.++
T Consensus       184 ~~~~~~~~~Di~slG~il~el~~~g~~pf~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l  243 (270)
T cd05047         184 NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGYRLEK---------------PLNCDDEVYDL  243 (270)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHcCCCCCccc-----cCHHHHHHHHhCCCCCCC---------------CCcCCHHHHHH
Confidence            34456778999999999999997 8888542     222233332211110000               00122347799


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...|...+|.+||++.+++++|+.+
T Consensus       244 i~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         244 MRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             HHHHcccChhhCCCHHHHHHHHHHh
Confidence            9999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=97.92  E-value=8.8e-06  Score=77.28  Aligned_cols=82  Identities=21%  Similarity=0.455  Sum_probs=56.4

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++||||||+++.|++| |..|...     ....++++.........+               ...+...+..+
T Consensus       199 ~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~-----~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~l  258 (283)
T cd05091         199 MYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG-----YSNQDVIEMIRNRQVLPC---------------PDDCPAWVYTL  258 (283)
T ss_pred             hcCCCCcchhHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCcCCC---------------CCCCCHHHHHH
Confidence            34556778999999999999998 6666432     222344443332221110               11234457889


Q ss_pred             HhhcCCCCccCchhHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ...|++.+|.+||+|.++++.|+
T Consensus       259 i~~cl~~~p~~RP~~~~i~~~l~  281 (283)
T cd05091         259 MLECWNEFPSRRPRFKDIHSRLR  281 (283)
T ss_pred             HHHHhCCCcccCCCHHHHHHHhh
Confidence            99999999999999999998876

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=97.89  E-value=8.5e-06  Score=76.77  Aligned_cols=87  Identities=11%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++||||||+++.|+++ |+.|+....  ......++....+..                  ...++...+
T Consensus       181 E~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~--~~~~~~~i~~~~~~~------------------~~~~~~~~~  240 (269)
T cd05065         181 EAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS--NQDVINAIEQDYRLP------------------PPMDCPTAL  240 (269)
T ss_pred             hHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC--HHHHHHHHHcCCcCC------------------CcccCCHHH
Confidence            33334556778999999999999886 888864321  112333332111100                  011334557


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .++...|.+.+|.+||+|.+++..|+.+
T Consensus       241 ~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         241 HQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            7899999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=97.89  E-value=8e-06  Score=78.54  Aligned_cols=89  Identities=13%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CCccccCCCcceeehhhhhhcccCC--CCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAK--KPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk--~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      ..+..+.++||||||+++.|++++.  .|....-  ......++...+......+...           ....+...+.+
T Consensus       213 ~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  279 (304)
T cd05096         213 LMGKFTTASDVWAFGVTLWEILMLCKEQPYGELT--DEQVIENAGEFFRDQGRQVYLF-----------RPPPCPQGLYE  279 (304)
T ss_pred             hcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCC--HHHHHHHHHHHhhhcccccccc-----------CCCCCCHHHHH
Confidence            3456778999999999999998754  4433211  1223333333332211111000           01123455889


Q ss_pred             HHhhcCCCCccCchhHHHHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +...|.+.+|.+||+|.+|++.|+
T Consensus       280 li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         280 LMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             HHHHHccCCchhCcCHHHHHHHHh
Confidence            999999999999999999988875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=97.88  E-value=1.5e-05  Score=76.29  Aligned_cols=87  Identities=18%  Similarity=0.298  Sum_probs=58.5

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|||||||++.||+| |+.|...     .+..++.+.........     .          ...+...+.++
T Consensus       191 ~~~~~~~~~DvwSlG~il~el~t~g~~pf~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~l  250 (297)
T cd05089         191 NYSVYTTKSDVWSFGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGYRME-----K----------PRNCDDEVYEL  250 (297)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHhcCCCCC-----C----------CCCCCHHHHHH
Confidence            34456778999999999999998 8888542     22233333222111000     0          01122347789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ...|...+|.+||++.+++++|+.+...
T Consensus       251 i~~~l~~~p~~Rp~~~~i~~~l~~~~~~  278 (297)
T cd05089         251 MRQCWRDRPYERPPFAQISVQLSRMLEA  278 (297)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=97.88  E-value=1.7e-05  Score=74.67  Aligned_cols=83  Identities=18%  Similarity=0.332  Sum_probs=55.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|+++ |..|...     ..-.++.+.........     .          ...+...+.++.
T Consensus       189 ~~~~~~~~Dv~SlG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~li  248 (273)
T cd05035         189 DRVYTSKSDVWAFGVTMWEIATRGQTPYPG-----VENHEIYDYLRHGNRLK-----Q----------PEDCLDELYDLM  248 (273)
T ss_pred             cCCCCcccchHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC-----C----------CcCCCHHHHHHH
Confidence            4456778999999999999999 7777532     11122222222111100     0          012334578888


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|...+|.+||++.|+++.|+.+
T Consensus       249 ~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         249 YSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HHHcCCChhhCcCHHHHHHHHHhh
Confidence            999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=97.88  E-value=1.4e-05  Score=76.17  Aligned_cols=88  Identities=18%  Similarity=0.322  Sum_probs=59.3

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|+||||+++.||+| |+.|.....     -...++.........     .          ...+...+.++
T Consensus       195 ~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~-----~~~~~~~i~~~~~~~-----~----------~~~~~~~l~~l  254 (288)
T cd05093         195 MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS-----NNEVIECITQGRVLQ-----R----------PRTCPKEVYDL  254 (288)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-----HHHHHHHHHcCCcCC-----C----------CCCCCHHHHHH
Confidence            34456778999999999999998 888754321     112222111111100     0          00122348899


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      ...|.+.+|.+||++.+|++.|+.+....
T Consensus       255 i~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         255 MLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             HHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=97.87  E-value=1e-05  Score=76.06  Aligned_cols=83  Identities=18%  Similarity=0.394  Sum_probs=55.5

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|+++ |..|+.....  ..+.+++.......       .           ...+...+.++.
T Consensus       182 ~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~~~~~~-------~-----------~~~~~~~l~~li  241 (266)
T cd05033         182 YRKFTSASDVWSFGIVMWEVMSYGERPYWDMSN--QDVIKAVEDGYRLP-------P-----------PMDCPSALYQLM  241 (266)
T ss_pred             cCCCccccchHHHHHHHHHHHccCCCCCCCCCH--HHHHHHHHcCCCCC-------C-----------CCCCCHHHHHHH
Confidence            3456778999999999999998 8888643211  11222221111000       0           012234477999


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|.+.+|.+||+|.++++.|+++
T Consensus       242 ~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         242 LDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HHHcCCCcccCcCHHHHHHHHHhh
Confidence            999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=97.86  E-value=8.6e-06  Score=76.33  Aligned_cols=83  Identities=18%  Similarity=0.291  Sum_probs=55.1

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|+||||+++.|++| |+.|....-  ......++....+.       +.           ...+...+.++
T Consensus       177 ~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~~l  236 (261)
T cd05072         177 NFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS--NSDVMSALQRGYRM-------PR-----------MENCPDELYDI  236 (261)
T ss_pred             ccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC--HHHHHHHHHcCCCC-------CC-----------CCCCCHHHHHH
Confidence            34556778999999999999999 888853211  11222222211110       00           01123347789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...|...+|.+||++.++.+.|+.
T Consensus       237 i~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         237 MKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             HHHHccCCcccCcCHHHHHHHHhc
Confidence            999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=97.86  E-value=1.7e-05  Score=76.33  Aligned_cols=85  Identities=19%  Similarity=0.395  Sum_probs=59.0

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |..|..     +.+..++++..........               ...+...+.++.
T Consensus       213 ~~~~~~~~Di~slG~~l~el~~~g~~p~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~li  272 (304)
T cd05101         213 DRVYTHQSDVWSFGVLMWEIFTLGGSPYP-----GIPVEELFKLLKEGHRMDK---------------PANCTNELYMMM  272 (304)
T ss_pred             cCCCCchhhHHHHHHHHHHHHcCCCCCcc-----cCCHHHHHHHHHcCCcCCC---------------CCCCCHHHHHHH
Confidence            4456778999999999999998 666643     2344455443322111100               012344577889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|...+|.+||+|.|+++.|+++..
T Consensus       273 ~~cl~~~p~~Rps~~e~l~~l~~~~~  298 (304)
T cd05101         273 RDCWHAIPSHRPTFKQLVEDLDRILT  298 (304)
T ss_pred             HHHcccChhhCCCHHHHHHHHHHHHH
Confidence            99999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.86  E-value=2.1e-05  Score=74.72  Aligned_cols=89  Identities=20%  Similarity=0.359  Sum_probs=57.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCcccc----------CCCCCHHHHHHHHhCCCcceeeeccccccccccccchh
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIF----------NGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKE  451 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~----------~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~  451 (495)
                      .....+.++|+||||+++.|++|++.|.....          .+......+++.........               ...
T Consensus       185 ~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~  249 (284)
T cd05079         185 IQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLP---------------RPP  249 (284)
T ss_pred             ccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCC---------------CCC
Confidence            34456778999999999999999876532110          11222222222211111000               011


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .+...+.++...|.+.+|.+||++.++++.++.|
T Consensus       250 ~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         250 NCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             CCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            2345688999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=97.86  E-value=1.1e-05  Score=75.86  Aligned_cols=85  Identities=8%  Similarity=0.127  Sum_probs=54.9

Q ss_pred             cCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044          380 YGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       380 ~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      ....+..+.++||||||+++.|+++|+.|...     .+....+..........+.+              ......+.+
T Consensus       184 ~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~-----~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~  244 (269)
T cd08528         184 IVKNEPYGEKADVWAFGCILYQMCTLQPPFYS-----TNMLSLATKIVEAVYEPLPE--------------GMYSEDVTD  244 (269)
T ss_pred             hhcCCCCchHHHHHHHHHHHHHHHhCCCcccc-----cCHHHHHHHHhhccCCcCCc--------------ccCCHHHHH
Confidence            33345567889999999999999999988532     12223332222111110000              011233667


Q ss_pred             HHhhcCCCCccCchhHHHHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +...|.+.+|.+||+|.||+++++
T Consensus       245 li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         245 VITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             HHHHHCCCCCccCCCHHHHHHHhc
Confidence            788999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=97.85  E-value=9.7e-06  Score=77.58  Aligned_cols=92  Identities=21%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCC--CCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAK--KPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk--~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      |....+..+.++||||||+++.|++|+.  .|.+...  .....+.+..........+...           ....+...
T Consensus       201 E~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  267 (295)
T cd05097         201 ESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS--DEQVIENTGEFFRNQGRQIYLS-----------QTPLCPSP  267 (295)
T ss_pred             hhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC--hHHHHHHHHHhhhhccccccCC-----------CCCCCCHH
Confidence            3334456788999999999999999854  3432211  1111111111111110000000           00112345


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +.+++..|.+.+|.+||+|.+|++.|+
T Consensus       268 l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         268 VFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            889999999999999999999998886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=97.84  E-value=2.7e-05  Score=74.36  Aligned_cols=84  Identities=21%  Similarity=0.437  Sum_probs=55.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|||||||++.|+++ |..|...     .+..+..+.........               ....+...+.++
T Consensus       207 ~~~~~~~~~Di~slG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l  266 (293)
T cd05053         207 FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG-----IPVEELFKLLKEGYRME---------------KPQNCTQELYHL  266 (293)
T ss_pred             ccCCcCcccceeehhhHHHHHhcCCCCCCCC-----CCHHHHHHHHHcCCcCC---------------CCCCCCHHHHHH
Confidence            34456788999999999999997 7777432     22222221111110000               011223458889


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...|...+|.+||++.|+++.|+.+
T Consensus       267 i~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         267 MRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             HHHHcccCcccCcCHHHHHHHHHHh
Confidence            9999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=97.84  E-value=2.1e-05  Score=73.97  Aligned_cols=86  Identities=14%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|+++|+.|...   +..+...+.+....     ...+...         .......+..+..
T Consensus       180 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~---~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~~li~  242 (267)
T cd08229         180 ENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLCKKIEQ-----CDYPPLP---------SDHYSEELRQLVN  242 (267)
T ss_pred             CCCccchhhHHHHHHHHHHHHhCCCCccc---ccchHHHHhhhhhc-----CCCCCCC---------cccccHHHHHHHH
Confidence            34456789999999999999999999532   22232333222111     1111110         0012234667888


Q ss_pred             hcCCCCccCchhHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .|...+|.+||+|.+|+++++++
T Consensus       243 ~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         243 MCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             HhcCCCcccCCCHHHHHHHHhhh
Confidence            99999999999999999988764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=97.83  E-value=1.4e-05  Score=79.21  Aligned_cols=88  Identities=16%  Similarity=0.289  Sum_probs=56.6

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|||||||++.|+++ |+.|......+.    .+.+. ..... ....+..             ....+
T Consensus       284 E~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~----~~~~~-~~~~~-~~~~~~~-------------~~~~l  344 (374)
T cd05106         284 ESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS----KFYKM-VKRGY-QMSRPDF-------------APPEI  344 (374)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH----HHHHH-HHccc-CccCCCC-------------CCHHH
Confidence            33334557789999999999999997 998865322111    11111 11110 0000100             12336


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .++...|.+.+|.+||++.+|+++|+++
T Consensus       345 ~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         345 YSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            7888899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=97.83  E-value=9.2e-06  Score=78.09  Aligned_cols=86  Identities=16%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|.....  ...+.++++....          ..        ....+...+..+
T Consensus       184 ~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~~----------~~--------~~~~~~~~~~~l  243 (303)
T cd05110         184 HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--TREIPDLLEKGER----------LP--------QPPICTIDVYMV  243 (303)
T ss_pred             ccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHCCCC----------CC--------CCCCCCHHHHHH
Confidence            34556778999999999999997 888864321  1122333321100          00        001233457888


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ...|...+|.+||+|.++++.++++..
T Consensus       244 i~~c~~~~p~~Rp~~~~l~~~l~~~~~  270 (303)
T cd05110         244 MVKCWMIDADSRPKFKELAAEFSRMAR  270 (303)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            999999999999999999999988753

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=97.83  E-value=1.4e-05  Score=74.65  Aligned_cols=84  Identities=20%  Similarity=0.423  Sum_probs=56.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|||+||+++.|+++ |+.|..     ..+..+++.........++               ...+...+.++
T Consensus       172 ~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l  231 (256)
T cd05082         172 REKKFSTKSDVWSFGILLWEIYSFGRVPYP-----RIPLKDVVPRVEKGYKMDA---------------PDGCPPVVYDV  231 (256)
T ss_pred             ccCCCCchhhhHHHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHhcCCCCCC---------------CCCCCHHHHHH
Confidence            34456778999999999999998 877743     2233343332221111110               01223457788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...|...+|.+||++.++++.|+.+
T Consensus       232 i~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         232 MKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HHHHhcCChhhCcCHHHHHHHHhcC
Confidence            9999999999999999999988753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=97.81  E-value=1.5e-05  Score=79.05  Aligned_cols=84  Identities=13%  Similarity=0.314  Sum_probs=55.3

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|...... ...+.++++......     .+.             .....+.++
T Consensus       289 ~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~~-----~~~-------------~~~~~l~~l  349 (375)
T cd05104         289 FNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV-DSKFYKMIKEGYRML-----SPE-------------CAPSEMYDI  349 (375)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc-hHHHHHHHHhCccCC-----CCC-------------CCCHHHHHH
Confidence            34556778999999999999998 7777543211 112233332211100     000             012346788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...|...+|.+||+|.||+++|+.
T Consensus       350 i~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         350 MKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             HHHHccCChhHCcCHHHHHHHHHh
Confidence            999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=97.80  E-value=2.1e-05  Score=73.43  Aligned_cols=80  Identities=23%  Similarity=0.338  Sum_probs=53.4

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|+||||+++.|+++ |+.|...     .+..+.++.......  ...+..             ....+.++.
T Consensus       175 ~~~~~~~~Di~s~G~~l~el~~~g~~p~~~-----~~~~~~~~~i~~~~~--~~~~~~-------------~~~~~~~li  234 (256)
T cd05114         175 FSKYSSKSDVWSFGVLMWEVFTEGKMPFEK-----KSNYEVVEMISRGFR--LYRPKL-------------ASMTVYEVM  234 (256)
T ss_pred             cCccchhhhhHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHCCCC--CCCCCC-------------CCHHHHHHH
Confidence            3456778999999999999999 8888532     122233332222110  001111             123478999


Q ss_pred             hhcCCCCccCchhHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      ..|.+.+|.+||+|.++++.|
T Consensus       235 ~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         235 YSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             HHHccCCcccCcCHHHHHHhh
Confidence            999999999999999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=97.80  E-value=1.7e-05  Score=75.97  Aligned_cols=86  Identities=14%  Similarity=0.303  Sum_probs=54.6

Q ss_pred             CCccccCCCcceeehhhhhhccc--CCCCCccccCCCCCHHHHHHHH---hCCCcceeeeccccccccccccchhhHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT--AKKPTDEIFNGEMTLRRWVNDL---LSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t--gk~p~~~~~~~~~~l~~wv~~~---~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      ..+..+.++||||||+++.|++|  |..|...     .+..+++...   +.........+           ....+...
T Consensus       205 ~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  268 (296)
T cd05095         205 LLGKFTTASDVWAFGVTLWEILTLCKEQPYSQ-----LSDEQVIENTGEFFRDQGRQVYLP-----------KPALCPDS  268 (296)
T ss_pred             hcCCccchhhhhHHHHHHHHHHHhCCCCCccc-----cChHHHHHHHHHHHhhccccccCC-----------CCCCCCHH
Confidence            34567789999999999999998  4455321     1222333221   11110000000           01123456


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +.++...|...+|.+||+|.+|++.|+
T Consensus       269 ~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         269 LYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            889999999999999999999998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=97.79  E-value=2.5e-05  Score=75.21  Aligned_cols=86  Identities=17%  Similarity=0.385  Sum_probs=58.8

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|||||||++.|+++ |+.|..     +.+....++........+               ....+...+.++.
T Consensus       216 ~~~~~~~~DvwslG~~l~el~~~g~~p~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~li  275 (307)
T cd05098         216 DRIYTHQSDVWSFGVLLWEIFTLGGSPYP-----GVPVEELFKLLKEGHRMD---------------KPSNCTNELYMMM  275 (307)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHcCCCCCCC-----cCCHHHHHHHHHcCCCCC---------------CCCcCCHHHHHHH
Confidence            3445678999999999999998 777743     234334433322111100               0112234577889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|...+|.+||+|.+|++.|+++...
T Consensus       276 ~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         276 RDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=97.79  E-value=1.8e-05  Score=74.16  Aligned_cols=86  Identities=21%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++||||||+++.|++| |+.|....     .-..-...........     .          ...+...+
T Consensus       174 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~~  233 (261)
T cd05068         174 EAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM-----TNAEVLQQVDQGYRMP-----C----------PPGCPKEL  233 (261)
T ss_pred             cccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CCcCCHHH
Confidence            33344556789999999999999999 88775431     1111111111110000     0          01123457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      .+++..|...+|.+||+|.++++.|++
T Consensus       234 ~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         234 YDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             HHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=97.74  E-value=1.8e-05  Score=76.57  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|.+.     .+..++.........       . .       ....+...+.++.
T Consensus       185 ~~~~~~~~Di~slGv~l~el~t~g~~p~~~-----~~~~~~~~~~~~~~~-------~-~-------~~~~~~~~~~~li  244 (316)
T cd05108         185 HRIYTHQSDVWSYGVTVWELMTFGSKPYDG-----IPASEISSILEKGER-------L-P-------QPPICTIDVYMIM  244 (316)
T ss_pred             cCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHhCCCC-------C-C-------CCCCCCHHHHHHH
Confidence            4456788999999999999998 8888643     222222211111100       0 0       0112344578899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|...+|.+||++.+++..+..+..
T Consensus       245 ~~cl~~~p~~Rps~~~l~~~l~~~~~  270 (316)
T cd05108         245 VKCWMIDADSRPKFRELIIEFSKMAR  270 (316)
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHHc
Confidence            99999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=97.74  E-value=2.8e-05  Score=72.58  Aligned_cols=86  Identities=21%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |+......+.++|+||||+++.||+| |+.|++..     +-.+.++.......      .. .       ........+
T Consensus       170 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~-----~~~~~~~~~~~~~~------~~-~-------~~~~~~~~~  230 (257)
T cd05040         170 ESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL-----SGSQILKKIDKEGE------RL-E-------RPEACPQDI  230 (257)
T ss_pred             HHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHhcCC------cC-C-------CCccCCHHH
Confidence            33334456778999999999999999 99996532     22222222211100      00 0       001123457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      .++...|...+|.+||++.++++.|.
T Consensus       231 ~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         231 YNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             HHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            88999999999999999999998774

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=97.74  E-value=2.7e-05  Score=72.39  Aligned_cols=86  Identities=21%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             hhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      +|+...+..+.++|+||||+++.|+++ |..|....     ....-...........     .          ...+...
T Consensus       163 PE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~  222 (250)
T cd05085         163 PEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM-----TNQQAREQVEKGYRMS-----C----------PQKCPDD  222 (250)
T ss_pred             HHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CCCCCHH
Confidence            344445667889999999999999998 88785322     2111111111110000     0          0112345


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +.++...|...+|.+||+|.|++++|.
T Consensus       223 ~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         223 VYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            788999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=97.73  E-value=2.2e-05  Score=75.01  Aligned_cols=92  Identities=17%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc--CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT--AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t--gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      |+...+..+.++||||||+++.|+++  +..|.....  ...+.+++...+.........+           ....+...
T Consensus       202 E~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  268 (296)
T cd05051         202 ESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT--DQQVIENAGHFFRDDGRQIYLP-----------RPPNCPKD  268 (296)
T ss_pred             HHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC--hHHHHHHHHhccccccccccCC-----------CccCCCHH
Confidence            33344567889999999999999998  445543211  1112222222111110000000           00112345


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +.++...|.+.+|.+||++.++++.|+
T Consensus       269 l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         269 IYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            889999999999999999999988875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=97.73  E-value=3.4e-05  Score=72.75  Aligned_cols=86  Identities=16%  Similarity=0.262  Sum_probs=56.1

Q ss_pred             cCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          380 YGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       380 ~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      +......+.++|+||||+++.|+++ |+.|...     ..-.+..+.........     .          ...+...+.
T Consensus       185 ~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~  244 (272)
T cd05075         185 SLADRVYTTKSDVWSFGVTMWEIATRGQTPYPG-----VENSEIYDYLRQGNRLK-----Q----------PPDCLDGLY  244 (272)
T ss_pred             HccCCCcChHHHHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCCCC-----C----------CCCCCHHHH
Confidence            3334456778999999999999999 6777532     11122222211111100     0          012233477


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ++...|.+.+|.+||++.++++.|+.+
T Consensus       245 ~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         245 SLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.72  E-value=2.8e-05  Score=77.25  Aligned_cols=91  Identities=15%  Similarity=0.277  Sum_probs=64.1

Q ss_pred             hhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHH-HHHhCCCcceeeeccccccccccccchhhHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWV-NDLLSISVMEVVDANLLSWKDKHFMTKEQCMS  455 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv-~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~  455 (495)
                      +|.-.++..+.++|||+|||++-|+++ |..|...+-  ...+..|| +..++....                  .....
T Consensus       331 PEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~--~~~v~~kI~~~~~r~~~~------------------~~~p~  390 (474)
T KOG0194|consen  331 PETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK--NYEVKAKIVKNGYRMPIP------------------SKTPK  390 (474)
T ss_pred             hhhhccCccccccchhheeeeEEeeeccCCCCCCCCC--HHHHHHHHHhcCccCCCC------------------CCCHH
Confidence            466667788999999999999999998 677865322  12344555 222222111                  12244


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .+..+.-.|...+|.+||+|.+|++.++.+...
T Consensus       391 ~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~  423 (474)
T KOG0194|consen  391 ELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKK  423 (474)
T ss_pred             HHHHHHHHhccCChhhccCHHHHHHHHHHHHhc
Confidence            466777799999999999999999999987654

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=97.72  E-value=2.5e-05  Score=74.42  Aligned_cols=85  Identities=19%  Similarity=0.284  Sum_probs=57.2

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++|||||||++.|+++ |..|..     +.+...+++..........               .+.+...+
T Consensus       202 E~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l  261 (288)
T cd05050         202 ESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYY-----GMAHEEVIYYVRDGNVLSC---------------PDNCPLEL  261 (288)
T ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHhcCCCCCC---------------CCCCCHHH
Confidence            33344566788999999999999997 766743     2233344433322221100               01123457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      .++...|.+.+|.+||++.|+++.|+
T Consensus       262 ~~li~~~l~~~p~~Rpt~~el~~~l~  287 (288)
T cd05050         262 YNLMRLCWSKLPSDRPSFASINRILQ  287 (288)
T ss_pred             HHHHHHHcccCcccCCCHHHHHHHhh
Confidence            88999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=97.72  E-value=4.3e-05  Score=72.78  Aligned_cols=86  Identities=14%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccC---CCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFN---GEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~---~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      ....+.++|||++|+++.|++||+.|.+..-.   ....+..|+.........+..+.            .......+.+
T Consensus       177 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  244 (287)
T cd06621         177 GKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGN------------GIKWSEEFKD  244 (287)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCC------------CCchHHHHHH
Confidence            44567789999999999999999999764311   11233333332111111000000            0011234778


Q ss_pred             HHhhcCCCCccCchhHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +...|...+|.+||+|.|+++
T Consensus       245 li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         245 FIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             HHHHHcCCCcccCCCHHHHHh
Confidence            999999999999999999965

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.71  E-value=3.1e-05  Score=72.81  Aligned_cols=84  Identities=13%  Similarity=0.287  Sum_probs=55.7

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++||||||+++.|+++ |+.|....     +-...++.........               ....+...+.++
T Consensus       181 ~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~-----~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l  240 (266)
T cd05064         181 QYHHFSSASDVWSFGIVMWEVMSYGERPYWDM-----SGQDVIKAVEDGFRLP---------------APRNCPNLLHQL  240 (266)
T ss_pred             hhCCccchhHHHHHHHHHHHHhcCCCCCcCcC-----CHHHHHHHHHCCCCCC---------------CCCCCCHHHHHH
Confidence            34567789999999999999775 98886432     2222222211110000               011234557788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...|.+.+|.+||+|.++.+.|+.+
T Consensus       241 i~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         241 MLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HHHHcCCCchhCCCHHHHHHHHHhh
Confidence            9999999999999999999888653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=97.71  E-value=3e-05  Score=72.45  Aligned_cols=82  Identities=17%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|+||||+++.|++| |+.|.....     -..+.+..-......+               ...+...+.++.
T Consensus       172 ~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-----~~~~~~~i~~~~~~~~---------------~~~~~~~l~~li  231 (257)
T cd05116         172 YYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMK-----GNEVTQMIESGERMEC---------------PQRCPPEMYDLM  231 (257)
T ss_pred             cCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC-----HHHHHHHHHCCCCCCC---------------CCCCCHHHHHHH
Confidence            3456678999999999999998 888865321     1223222211111100               011233467899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ..|...+|.+||+|.+|+++|+.
T Consensus       232 ~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         232 KLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             HHHhccCchhCcCHHHHHHHHhc
Confidence            99999999999999999998863

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=97.70  E-value=5e-05  Score=73.37  Aligned_cols=89  Identities=21%  Similarity=0.345  Sum_probs=59.2

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|+||||+++.|+++ |+.|..     +.+....++........+.               ...+...+
T Consensus       206 E~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l  265 (314)
T cd05099         206 EALFDRVYTHQSDVWSFGILMWEIFTLGGSPYP-----GIPVEELFKLLREGHRMDK---------------PSNCTHEL  265 (314)
T ss_pred             HHHccCCcCccchhhHHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHHcCCCCCC---------------CCCCCHHH
Confidence            33334556788999999999999999 777743     2233333322211111110               01223457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .++...|...+|.+||++.++++.|+.+..
T Consensus       266 ~~li~~cl~~~p~~Rps~~~ll~~l~~~~~  295 (314)
T cd05099         266 YMLMRECWHAVPTQRPTFKQLVEALDKVLA  295 (314)
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            788999999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.70  E-value=9.2e-05  Score=63.75  Aligned_cols=84  Identities=25%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCcc-CCcccCCCCCCCEE
Q 011044           79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGK-IPSTLSSCKQLREL  157 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L  157 (495)
                      .+...+||+.|.+..  ...|..++.|.+|.+.+|.|+ .+.+.+...+++|..|.+.+|.+... --..+..||+|++|
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            455666777766541  224556666666777666664 33344444466677777776665421 11234455666666


Q ss_pred             EcccCcCc
Q 011044          158 SLSSNYFS  165 (495)
Q Consensus       158 ~l~~n~l~  165 (495)
                      .+-+|.++
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            66555544

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=97.70  E-value=4.4e-05  Score=74.48  Aligned_cols=85  Identities=20%  Similarity=0.398  Sum_probs=59.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|+++ |..|..     +.+..++.+........+.               ...+...+.++.
T Consensus       210 ~~~~~~~~Di~slG~il~el~~~g~~p~~-----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li  269 (334)
T cd05100         210 DRVYTHQSDVWSFGVLLWEIFTLGGSPYP-----GIPVEELFKLLKEGHRMDK---------------PANCTHELYMIM  269 (334)
T ss_pred             cCCcCchhhhHHHHHHHHHHHhcCCCCCC-----CCCHHHHHHHHHcCCCCCC---------------CCCCCHHHHHHH
Confidence            3445678999999999999998 677743     2344455443322211110               011233477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|...+|.+||+|.|+++.|+.+..
T Consensus       270 ~~cl~~~p~~Rps~~ell~~l~~~~~  295 (334)
T cd05100         270 RECWHAVPSQRPTFKQLVEDLDRVLT  295 (334)
T ss_pred             HHHcccChhhCcCHHHHHHHHHHHhh
Confidence            99999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=97.69  E-value=2.4e-05  Score=74.12  Aligned_cols=87  Identities=16%  Similarity=0.311  Sum_probs=59.0

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|.+...  ...+..++........                  ...+...+.++
T Consensus       184 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~~~~~------------------~~~~~~~~~~l  243 (279)
T cd05109         184 LHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP--AREIPDLLEKGERLPQ------------------PPICTIDVYMI  243 (279)
T ss_pred             ccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHCCCcCCC------------------CccCCHHHHHH
Confidence            34456788999999999999998 888865322  1223344432111000                  00123347788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ...|...+|..||++.++++.++.++..
T Consensus       244 i~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         244 MVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence            9999999999999999999988877543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=97.69  E-value=2.3e-05  Score=73.39  Aligned_cols=83  Identities=19%  Similarity=0.426  Sum_probs=55.1

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|+|+||+++.|+++ |+.|.....  .....+++.......        .          ...+...+.++
T Consensus       177 ~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~--~~~~~~~~~~~~~~~--------~----------~~~~~~~~~~~  236 (261)
T cd05148         177 SHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN--NHEVYDQITAGYRMP--------C----------PAKCPQEIYKI  236 (261)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC--HHHHHHHHHhCCcCC--------C----------CCCCCHHHHHH
Confidence            34456778999999999999998 788853211  111222222111100        0          01233457789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...|...+|.+||++.++++.|+.
T Consensus       237 i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         237 MLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             HHHHcCCCchhCcCHHHHHHHHhc
Confidence            999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.69  E-value=0.00013  Score=70.97  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=14.7

Q ss_pred             ccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       200 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      ++|++|++++|... ..|..+.  .+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            34555666555533 2222221  35555555544

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=97.69  E-value=2.5e-05  Score=72.85  Aligned_cols=82  Identities=16%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |+...+..+.++|+||||+++.|++||+.|....-     -...++.........+.               ......+.
T Consensus       171 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~  230 (256)
T cd08529         171 ELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN-----QGALILKIIRGVFPPVS---------------QMYSQQLA  230 (256)
T ss_pred             HHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHHHcCCCCCCc---------------cccCHHHH
Confidence            44444556788999999999999999999964321     11111211111110000               01223478


Q ss_pred             HHHhhcCCCCccCchhHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ++...|.+.+|.+||+|.++++
T Consensus       231 ~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         231 QLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             HHHHHHccCCcccCcCHHHHhh
Confidence            8899999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=4e-05  Score=49.59  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=12.5

Q ss_pred             CCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc
Q 011044           81 LQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL  115 (495)
Q Consensus        81 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  115 (495)
                      |++|++++|+|+ .+|..+.++++|++|++++|.+
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            444444444443 2222333444444444444433

...

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=97.68  E-value=3.8e-05  Score=72.01  Aligned_cols=88  Identities=15%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++|+|+||+++.|+++|+.|..............++.........     +.         .......+.
T Consensus       169 E~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~  234 (265)
T cd06605         169 ERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPR-----LP---------SGKFSPDFQ  234 (265)
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCC-----CC---------hhhcCHHHH
Confidence            3333445678899999999999999999997543322223334444333221110     00         000122366


Q ss_pred             HHHhhcCCCCccCchhHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ++...|...+|.+||++.+++.
T Consensus       235 ~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         235 DFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             HHHHHHcCCCchhCcCHHHHhh
Confidence            7788999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=6.4e-05  Score=64.70  Aligned_cols=103  Identities=24%  Similarity=0.278  Sum_probs=77.5

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCccc--ccCChhHhhcCCCCCEE
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLF--GELPPNFCNQMSNLESL  133 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~~l~~L~~L  133 (495)
                      ....+||++|.+...  ..|..++.|.+|.|.+|.|+..-|.--.-+++|..|.+.+|.+.  +.+-+ + ..||.|++|
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-L-a~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-L-ASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-h-ccCCcccee
Confidence            567889999998644  46888999999999999999777765556788999999999874  22222 2 238999999


Q ss_pred             EcccccCCccCC---cccCCCCCCCEEEcccC
Q 011044          134 FLKYNMFHGKIP---STLSSCKQLRELSLSSN  162 (495)
Q Consensus       134 ~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n  162 (495)
                      .+-+|.+...--   -.+..+|+|++||++.-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999998774211   13467788888887653

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=97.67  E-value=3.6e-05  Score=72.87  Aligned_cols=81  Identities=19%  Similarity=0.400  Sum_probs=54.5

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++||||||+++.|+++ |+.|....     +-.+.++..........               .......+.++.
T Consensus       198 ~~~~~~~~Di~slG~il~e~~~~g~~p~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~li  257 (280)
T cd05049         198 YRKFTTESDVWSFGVVLWEIFTYGKQPWYGL-----SNEEVIECITQGRLLQR---------------PRTCPSEVYDIM  257 (280)
T ss_pred             cCCcchhhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCcCCC---------------CCCCCHHHHHHH
Confidence            4456778999999999999999 98885421     22222322221111100               001234478899


Q ss_pred             hhcCCCCccCchhHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ..|.+.+|.+||++.||++.|+
T Consensus       258 ~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         258 LGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             HHHcCCCcccCCCHHHHHHHhh
Confidence            9999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=97.66  E-value=4.2e-05  Score=72.40  Aligned_cols=86  Identities=17%  Similarity=0.301  Sum_probs=56.8

Q ss_pred             hhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      +|....+..+.++|||||||++.|++| |+.|.+.     .+..+.++.........     .          ...+...
T Consensus       190 PE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~  249 (277)
T cd05036         190 PEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPG-----RTNQEVMEFVTGGGRLD-----P----------PKGCPGP  249 (277)
T ss_pred             HHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCcCC-----C----------CCCCCHH
Confidence            344455667889999999999999997 8877542     12223332222111000     0          0112345


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      +.++...|.+.+|.+||++.+|++.|.
T Consensus       250 ~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         250 VYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            778999999999999999999988775

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=97.66  E-value=5.9e-05  Score=72.47  Aligned_cols=83  Identities=20%  Similarity=0.351  Sum_probs=55.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |..|+..     .+..+..+........+     .          .......+.++..
T Consensus       198 ~~~~~~~Di~slG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~li~  257 (303)
T cd05088         198 SVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGYRLE-----K----------PLNCDDEVYDLMR  257 (303)
T ss_pred             cCCcccccchhhhhHHHHHHhcCCCCccc-----CChHHHHHHHhcCCcCC-----C----------CCCCCHHHHHHHH
Confidence            345678999999999999998 8888532     12223222211110000     0          0011234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|.+.+|.+||++.+++++++.+-
T Consensus       258 ~~l~~~p~~Rp~~~~il~~l~~~~  281 (303)
T cd05088         258 QCWREKPYERPSFAQILVSLNRML  281 (303)
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHH
Confidence            999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=97.66  E-value=2.7e-05  Score=73.39  Aligned_cols=83  Identities=16%  Similarity=0.354  Sum_probs=54.8

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|+++ |+.|.....  ...+..++..   .....     .          ...+...+.+++
T Consensus       189 ~~~~~~~sDi~slG~il~el~~~g~~p~~~~~--~~~~~~~~~~---~~~~~-----~----------~~~~~~~~~~l~  248 (273)
T cd05074         189 DNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE--NSEIYNYLIK---GNRLK-----Q----------PPDCLEDVYELM  248 (273)
T ss_pred             cCccchhhhhHHHHHHHHHHhhCCCCCCCCCC--HHHHHHHHHc---CCcCC-----C----------CCCCCHHHHHHH
Confidence            3445678999999999999999 777743211  1122222221   11000     0          011234588899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|.+.+|.+||++.++.+.|+.+
T Consensus       249 ~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         249 CQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HHHcCCChhhCcCHHHHHHHHHhh
Confidence            999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=97.65  E-value=4.8e-05  Score=71.15  Aligned_cols=83  Identities=14%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|+++ |+.|....     .-..+........... .              ...+...+.++.
T Consensus       172 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-~--------------~~~~~~~l~~li  231 (257)
T cd05115         172 FRKFSSRSDVWSYGITMWEAFSYGQKPYKKM-----KGPEVMSFIEQGKRLD-C--------------PAECPPEMYALM  231 (257)
T ss_pred             cCCCCchhhHHHHHHHHHHHhcCCCCCcCcC-----CHHHHHHHHHCCCCCC-C--------------CCCCCHHHHHHH
Confidence            4456778999999999999996 88886532     2222222211111000 0              112334577899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|...+|.+||+|.+|.+.|+.+
T Consensus       232 ~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         232 KDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             HHHcCCChhhCcCHHHHHHHHhhh
Confidence            999999999999999999888754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=97.65  E-value=4.1e-05  Score=71.43  Aligned_cols=84  Identities=21%  Similarity=0.339  Sum_probs=55.8

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|||+||+++.|+++ |+.|.+..     .....++......  ...++..             ....+
T Consensus       171 e~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~-----~~~~~~~~~~~~~--~~~~~~~-------------~~~~~  230 (256)
T cd05112         171 EVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENR-----SNSEVVETINAGF--RLYKPRL-------------ASQSV  230 (256)
T ss_pred             hHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcC-----CHHHHHHHHhCCC--CCCCCCC-------------CCHHH
Confidence            33344567778999999999999998 88886432     2223333222111  0011111             12348


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .+++..|.+.+|.+||+|.+|+++|
T Consensus       231 ~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         231 YELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             HHHHHHHcccChhhCCCHHHHHHhh
Confidence            8899999999999999999998876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=97.65  E-value=4.9e-05  Score=70.92  Aligned_cols=82  Identities=17%  Similarity=0.205  Sum_probs=54.4

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++|+||||+++.|++||+.|...     ......+..........+               .......+.
T Consensus       171 e~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~  230 (256)
T cd08218         171 EICENRPYNNKSDIWALGCVLYEMCTLKHAFEA-----GNMKNLVLKIIRGSYPPV---------------SSHYSYDLR  230 (256)
T ss_pred             HHhCCCCCCCccchhHHHHHHHHHHcCCCCccC-----CCHHHHHHHHhcCCCCCC---------------cccCCHHHH
Confidence            333445667889999999999999999998542     123334433332221110               001123467


Q ss_pred             HHHhhcCCCCccCchhHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ++...|...+|.+||+|.+|++
T Consensus       231 ~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         231 NLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             HHHHHHhhCChhhCcCHHHHhh
Confidence            7888999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=97.64  E-value=3.2e-05  Score=73.16  Aligned_cols=79  Identities=16%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||||+++.|++||+.|.......  ....++    ....    .+.+          ...+...+.++.
T Consensus       174 ~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~--~~~~~~----~~~~----~~~~----------~~~~~~~~~~li  233 (277)
T cd06642         174 KQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM--RVLFLI----PKNS----PPTL----------EGQYSKPFKEFV  233 (277)
T ss_pred             CcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh--hHHhhh----hcCC----CCCC----------CcccCHHHHHHH
Confidence            3445677899999999999999999996432211  111111    1100    0111          112234477888


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||+|.+|++
T Consensus       234 ~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         234 EACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             HHHccCCcccCcCHHHHHH
Confidence            9999999999999999976

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=6e-05  Score=48.78  Aligned_cols=34  Identities=38%  Similarity=0.475  Sum_probs=12.5

Q ss_pred             CCEEEcccccCCccCCcccCCCCCCCEEEcccCcC
Q 011044          130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYF  164 (495)
Q Consensus       130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  164 (495)
                      |++|++++|+++ .+|..++++++|++|++++|.+
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            344444444433 2232334444444444444433

...

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=97.64  E-value=5.6e-05  Score=71.09  Aligned_cols=85  Identities=21%  Similarity=0.422  Sum_probs=55.5

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++||||||+++.|++| |+.|.....  ......++.   ...       .+.        ........+
T Consensus       183 E~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~--~~~~~~~~~---~~~-------~~~--------~~~~~~~~~  242 (269)
T cd05044         183 ESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN--NQEVLQHVT---AGG-------RLQ--------KPENCPDKI  242 (269)
T ss_pred             HHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC--HHHHHHHHh---cCC-------ccC--------CcccchHHH
Confidence            33345567889999999999999998 888854211  111212211   110       000        001123457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      .++...|...+|.+||+|.++.+.|+
T Consensus       243 ~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         243 YQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             HHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            78999999999999999999998875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=97.64  E-value=3.3e-05  Score=72.62  Aligned_cols=87  Identities=14%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++|+|+||+++.|+++ |+.|+...-  ......++.....  .     +.           ...+...+
T Consensus       179 e~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~--~~~~~~~~~~~~~--~-----~~-----------~~~~~~~~  238 (267)
T cd05066         179 EAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS--NQDVIKAIEEGYR--L-----PA-----------PMDCPAAL  238 (267)
T ss_pred             hHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC--HHHHHHHHhCCCc--C-----CC-----------CCCCCHHH
Confidence            33334556788999999999999886 888864321  1122222221110  0     00           00123446


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .++...|...+|.+||+|.++++.|+.+
T Consensus       239 ~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         239 HQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            7889999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=97.63  E-value=3.8e-05  Score=76.76  Aligned_cols=86  Identities=14%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|||||||++.|+++ |..|......+     ..+........      ...        ....+...+.++
T Consensus       312 ~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~-----~~~~~~~~~~~------~~~--------~~~~~~~~l~~l  372 (400)
T cd05105         312 FDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVD-----STFYNKIKSGY------RMA--------KPDHATQEVYDI  372 (400)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchh-----HHHHHHHhcCC------CCC--------CCccCCHHHHHH
Confidence            34456778999999999999997 88886543211     11111111110      000        011223457889


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ...|...+|.+||++.+|+++|+.+.
T Consensus       373 i~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         373 MVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             HHHHCccCHhHCcCHHHHHHHHHHHc
Confidence            99999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.62  E-value=5.1e-05  Score=81.44  Aligned_cols=90  Identities=19%  Similarity=0.382  Sum_probs=62.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.-..+..++|+|||||||++-|+|| |..|.-..-..+ -+..|++    ++       ++.        ....|...+
T Consensus       874 Esl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~-v~~~~~~----gg-------RL~--------~P~~CP~~l  933 (1025)
T KOG1095|consen  874 ESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFE-VLLDVLE----GG-------RLD--------PPSYCPEKL  933 (1025)
T ss_pred             HHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHH-HHHHHHh----CC-------ccC--------CCCCCChHH
Confidence            55556888999999999999999998 455643211100 1111221    11       121        133688889


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .+|...|...+|++||++..+++.+..|...
T Consensus       934 y~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  934 YQLMLQCWKHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             HHHHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence            9999999999999999999999988877543

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=97.61  E-value=4.2e-05  Score=72.36  Aligned_cols=81  Identities=19%  Similarity=0.412  Sum_probs=54.4

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.|++| |+.|...     .+.....+..........               ...+...+.++.
T Consensus       195 ~~~~~~~~Di~slG~~l~el~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~li  254 (277)
T cd05062         195 DGVFTTYSDVWSFGVVLWEIATLAEQPYQG-----MSNEQVLRFVMEGGLLDK---------------PDNCPDMLFELM  254 (277)
T ss_pred             cCCcCchhHHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCcCCC---------------CCCCCHHHHHHH
Confidence            4456778999999999999999 5667432     222333332222111100               012234578899


Q ss_pred             hhcCCCCccCchhHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ..|...+|.+||++.|+++.++
T Consensus       255 ~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         255 RMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             HHHcCCChhhCcCHHHHHHHhh
Confidence            9999999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00023  Score=69.34  Aligned_cols=56  Identities=13%  Similarity=0.244  Sum_probs=28.7

Q ss_pred             cCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccC
Q 011044          100 FNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN  162 (495)
Q Consensus       100 ~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  162 (495)
                      ..++++++|++++|.+ ..+|. +   ..+|++|.+++|.--..+|..+.  ++|++|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L-~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDI-ESLPV-L---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCC-cccCC-C---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            3456666777776654 34441 1   33566666665432223443331  35556666555

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=97.59  E-value=3.8e-05  Score=71.75  Aligned_cols=81  Identities=21%  Similarity=0.351  Sum_probs=52.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|+||||+++.|++| |+.|.+..-  .......++....        ...          ...+...+.++
T Consensus       174 ~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~~~~~~~--------~~~----------~~~~~~~~~~l  233 (256)
T cd05059         174 DYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFS--NSEVVESVSAGYR--------LYR----------PKLAPTEVYTI  233 (256)
T ss_pred             ccCCCCchhhHHHHHHHHHHHhccCCCCCCCCC--HHHHHHHHHcCCc--------CCC----------CCCCCHHHHHH
Confidence            34556778999999999999999 677754211  1111111111000        000          01234458899


Q ss_pred             HhhcCCCCccCchhHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      ...|...+|.+||+|.|+++.|
T Consensus       234 i~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         234 MYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             HHHHhcCChhhCcCHHHHHHHh
Confidence            9999999999999999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=97.59  E-value=4.4e-05  Score=73.35  Aligned_cols=85  Identities=14%  Similarity=0.333  Sum_probs=54.6

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|||||||++.|++| |+.|....... ..+.+++....+..     .+             ......+.++
T Consensus       216 ~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~l  276 (302)
T cd05055         216 FNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVD-SKFYKLIKEGYRMA-----QP-------------EHAPAEIYDI  276 (302)
T ss_pred             ccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCch-HHHHHHHHcCCcCC-----CC-------------CCCCHHHHHH
Confidence            34556778999999999999998 88885432111 11112211110000     00             0011247788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...|...+|.+||++.|+++.|+.+
T Consensus       277 i~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         277 MKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHHHcCCCchhCcCHHHHHHHHHhh
Confidence            9999999999999999999988763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=97.58  E-value=2.3e-05  Score=73.87  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=58.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+..+|||+|||++-|+.| |+.|.-+.-..  ....++++.++          +.        ....|.-+++.|..
T Consensus       473 ~~yssasDvWsfGVllWELmtlg~~PyaeIDPf--Em~~ylkdGyR----------la--------QP~NCPDeLf~vMa  532 (563)
T KOG1024|consen  473 SHYSSASDVWSFGVLLWELMTLGKLPYAEIDPF--EMEHYLKDGYR----------LA--------QPFNCPDELFTVMA  532 (563)
T ss_pred             hhhcchhhhHHHHHHHHHHHhcCCCCccccCHH--HHHHHHhccce----------ec--------CCCCCcHHHHHHHH
Confidence            345677999999999999997 78886432111  11223322221          11        12257777999999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|.+..|++||+++|++.-|.+--
T Consensus       533 cCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  533 CCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             HHHhcCcccCCCHHHHHHHHHHHH
Confidence            999999999999999998887643

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=97.56  E-value=8.4e-05  Score=70.57  Aligned_cols=83  Identities=20%  Similarity=0.425  Sum_probs=53.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++||||||+++.|++| |+.|....     +-....+.........     .          .+.+...+.++
T Consensus       199 ~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~l  258 (283)
T cd05090         199 MYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF-----SNQEVIEMVRKRQLLP-----C----------SEDCPPRMYSL  258 (283)
T ss_pred             ccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----CHHHHHHHHHcCCcCC-----C----------CCCCCHHHHHH
Confidence            34556788999999999999998 77774321     1112222211111110     0          11223446778


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...|.+.+|.+||++.++.+.++.
T Consensus       259 i~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         259 MTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHcccCcccCcCHHHHHHHhhc
Confidence            889999999999999999888763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=97.56  E-value=6.9e-05  Score=71.07  Aligned_cols=82  Identities=20%  Similarity=0.336  Sum_probs=53.4

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++||||||+++.|++| |+.|.....     -.+.+..........  .             ...+...+.++
T Consensus       197 ~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-----~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~l  256 (280)
T cd05092         197 LYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS-----NTEAIECITQGRELE--R-------------PRTCPPEVYAI  256 (280)
T ss_pred             ccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC-----HHHHHHHHHcCccCC--C-------------CCCCCHHHHHH
Confidence            34456788999999999999998 777753211     111121111110000  0             01223447788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ...|.+.+|.+||++.||.+.|+
T Consensus       257 i~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         257 MQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HHHHccCChhhCCCHHHHHHHHh
Confidence            99999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=97.55  E-value=3.2e-05  Score=72.02  Aligned_cols=82  Identities=24%  Similarity=0.415  Sum_probs=53.4

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++||||||+++.|+++ |+.|.+....      .............    .          ....+...+.++
T Consensus       169 ~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~------~~~~~~~~~~~~~----~----------~~~~~~~~~~~l  228 (252)
T cd05084         169 NYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN------QQTREAIEQGVRL----P----------CPELCPDAVYRL  228 (252)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH------HHHHHHHHcCCCC----C----------CcccCCHHHHHH
Confidence            44556778999999999999998 7777543211      1111111111000    0          011223457889


Q ss_pred             HhhcCCCCccCchhHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ...|...+|.+||++.+|.++|+
T Consensus       229 i~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         229 MERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHh
Confidence            99999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=97.55  E-value=0.0001  Score=69.74  Aligned_cols=85  Identities=16%  Similarity=0.286  Sum_probs=58.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|+||||+++.|++| |+.|++..     +..++..........  ..+             ..+...+..+.
T Consensus       185 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-----~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~  244 (279)
T cd05057         185 HRIYTHKSDVWSYGVTVWELMTFGAKPYEGI-----PAVEIPDLLEKGERL--PQP-------------PICTIDVYMVL  244 (279)
T ss_pred             cCCcCchhhHHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHhCCCCC--CCC-------------CCCCHHHHHHH
Confidence            3456778999999999999999 99986532     222333222211110  000             01233477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|...+|.+||++.++++.++++..
T Consensus       245 ~~~l~~~p~~Rp~~~~l~~~l~~~~~  270 (279)
T cd05057         245 VKCWMIDAESRPTFKELINEFSKMAR  270 (279)
T ss_pred             HHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            99999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=97.55  E-value=7.9e-05  Score=69.72  Aligned_cols=86  Identities=21%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.....+.+.++|+||||+++.|+++ |+.|....     +-....+.........     .          .......+
T Consensus       173 E~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~~  232 (260)
T cd05070         173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM-----NNREVLEQVERGYRMP-----C----------PQDCPISL  232 (260)
T ss_pred             HHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CCcCCHHH
Confidence            33334567789999999999999999 77775431     1112222211110000     0          01223457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      .++...|...+|.+||+|.++++.|+.
T Consensus       233 ~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         233 HELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             HHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            889999999999999999999888764

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=97.55  E-value=5.7e-05  Score=70.43  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|+++|+.|..     ..+..+++..........+ .+              .....+.++..
T Consensus       176 ~~~~~~~~Dv~slG~il~~l~~g~~p~~-----~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~i~  235 (257)
T cd08225         176 NRPYNNKTDIWSLGCVLYELCTLKHPFE-----GNNLHQLVLKICQGYFAPI-SP--------------NFSRDLRSLIS  235 (257)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCC-----CccHHHHHHHHhcccCCCC-CC--------------CCCHHHHHHHH
Confidence            3456778999999999999999999853     2344566655443322111 00              01123667778


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       236 ~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         236 QLFKVSPRDRPSITSILK  253 (257)
T ss_pred             HHhccChhhCcCHHHHhh
Confidence            899999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.55  E-value=5.4e-05  Score=71.94  Aligned_cols=86  Identities=16%  Similarity=0.253  Sum_probs=56.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCC------CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG------EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~------~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      .+..+.++|+||||+++.|++||+.|.+.....      ...+..+++.......     +.+         ...+....
T Consensus       176 ~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~  241 (284)
T cd06620         176 GGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPP-----PRL---------PSSDFPED  241 (284)
T ss_pred             cCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccC-----CCC---------CchhcCHH
Confidence            346677999999999999999999997643321      1122334433332210     111         00112344


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      +..+...|...+|.+||++.||+++.
T Consensus       242 ~~~li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         242 LRDFVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHhcCc
Confidence            77788899999999999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=97.53  E-value=4.8e-05  Score=71.22  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|+||||+++.|++| |+.|......  .....+.......        ..          .......+
T Consensus       173 e~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~~~~~~--------~~----------~~~~~~~~  232 (260)
T cd05069         173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN--REVLEQVERGYRM--------PC----------PQGCPESL  232 (260)
T ss_pred             HHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCCC--------CC----------CcccCHHH
Confidence            33344567788999999999999999 7877543211  1111222111100        00          00122346


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      .++...|...+|.+||++.+|++.|+.
T Consensus       233 ~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         233 HELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             HHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            678889999999999999999988864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=97.53  E-value=8e-05  Score=69.44  Aligned_cols=82  Identities=22%  Similarity=0.426  Sum_probs=54.3

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|+||||+++.|+++ |+.|...     .+...+..........+.               ...+...+.++
T Consensus       170 ~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l  229 (254)
T cd05083         170 KHKKFSSKSDVWSYGVLLWEVFSYGRAPYPK-----MSLKEVKECVEKGYRMEP---------------PEGCPADVYVL  229 (254)
T ss_pred             ccCCcCchhhHHHHHHHHHHHHhCCCCCCcc-----CCHHHHHHHHhCCCCCCC---------------CCcCCHHHHHH
Confidence            34556778999999999999997 8777532     222233222211110000               01123447789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ...|.+.+|..||++.++++.++
T Consensus       230 i~~~l~~~p~~Rp~~~~l~~~l~  252 (254)
T cd05083         230 MTSCWETEPKKRPSFHKLREKLE  252 (254)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHc
Confidence            99999999999999999998875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=97.53  E-value=7.9e-05  Score=70.18  Aligned_cols=84  Identities=15%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|+++ |+.|.+....  .....+++...  .. .     .          ...+...+.++..
T Consensus       183 ~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~~~~~~~~~~--~~-~-----~----------~~~~~~~~~~li~  242 (270)
T cd05056         183 RRFTSASDVWMFGVCMWEILMLGVKPFQGVKN--NDVIGRIENGE--RL-P-----M----------PPNCPPTLYSLMT  242 (270)
T ss_pred             CCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHcCC--cC-C-----C----------CCCCCHHHHHHHH
Confidence            345678999999999999996 8888643221  11222222110  00 0     0          0122345778889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.+++..|+.++.
T Consensus       243 ~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         243 KCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=97.52  E-value=7.1e-05  Score=69.84  Aligned_cols=84  Identities=26%  Similarity=0.466  Sum_probs=54.4

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|+||||+++.|+++ |+.|....     +...-............               .......+.++
T Consensus       172 ~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l  231 (256)
T cd05039         172 REKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-----PLKDVVPHVEKGYRMEA---------------PEGCPPEVYKV  231 (256)
T ss_pred             cCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHhcCCCCCC---------------ccCCCHHHHHH
Confidence            34456678999999999999997 88885421     21111111111100000               01123447788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...|+..+|.+||++.|++++|+.+
T Consensus       232 i~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         232 MKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             HHHHhccChhhCcCHHHHHHHHhcC
Confidence            9999999999999999999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=97.51  E-value=9.6e-05  Score=69.57  Aligned_cols=83  Identities=13%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             cccCCCcceeehhhhhhcccC-CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTA-KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tg-k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++||||||+++.|++++ +.|.+.     .+-..++..........+.++.+....          ...+.++...
T Consensus       184 ~~~~~~DiwslG~~l~el~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~  248 (268)
T cd05086         184 EQTKPSNVWALGVTLWELFENAAQPYSH-----LSDREVLNHVIKDQQVKLFKPQLELPY----------SERWYEVLQF  248 (268)
T ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHhhcccccCCCccCCCC----------cHHHHHHHHH
Confidence            346789999999999999975 445432     122334444333333333444332111          1123445556


Q ss_pred             cCCCCccCchhHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      |. .+|.+||++++|++.|.
T Consensus       249 c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         249 CW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             Hh-hCcccCCCHHHHHHHhc
Confidence            76 56999999999988763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=97.51  E-value=7e-05  Score=69.96  Aligned_cols=81  Identities=17%  Similarity=0.301  Sum_probs=52.6

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++||||||+++.|++| |+.|....     +-..............  .+.             .....+.++
T Consensus       174 ~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~l  233 (256)
T cd05113         174 LYSKFSSKSDVWAFGVLMWEVYSLGKMPYERF-----NNSETVEKVSQGLRLY--RPH-------------LASEKVYAI  233 (256)
T ss_pred             hcCcccchhHHHHHHHHHHHHhcCCCCCcCcC-----CHHHHHHHHhcCCCCC--CCC-------------CCCHHHHHH
Confidence            34456778999999999999999 88885421     1112222111111000  000             112347788


Q ss_pred             HhhcCCCCccCchhHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      ...|...+|.+||++.++++.+
T Consensus       234 i~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         234 MYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             HHHHcCCCcccCCCHHHHHHhh
Confidence            9999999999999999998776

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=97.51  E-value=8.7e-05  Score=70.14  Aligned_cols=82  Identities=21%  Similarity=0.415  Sum_probs=54.5

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|||+||+++.|++| |+.|....  ....+.+++.   ......     .          ...+...+.++
T Consensus       194 ~~~~~~~~~Di~slG~il~el~t~g~~p~~~~--~~~~~~~~~~---~~~~~~-----~----------~~~~~~~~~~l  253 (277)
T cd05032         194 KDGVFTTKSDVWSFGVVLWEMATLAEQPYQGL--SNEEVLKFVI---DGGHLD-----L----------PENCPDKLLEL  253 (277)
T ss_pred             hcCCCCcccchHHHHHHHHHhhccCCCCCccC--CHHHHHHHHh---cCCCCC-----C----------CCCCCHHHHHH
Confidence            34556788999999999999998 77775321  1112222222   111100     0          01123458899


Q ss_pred             HhhcCCCCccCchhHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ...|...+|.+||++.++++.|+
T Consensus       254 i~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         254 MRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             HHHHcCCChhhCCCHHHHHHHhc
Confidence            99999999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=97.51  E-value=8.1e-05  Score=70.27  Aligned_cols=83  Identities=14%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++|||+||+++.|++||+.|.+....     ..............+.+.              .....+.
T Consensus       168 E~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~-----~~~~~~~~~~~~~~~~~~--------------~~~~~~~  228 (274)
T cd06609         168 EVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP-----MRVLFLIPKNNPPSLEGN--------------KFSKPFK  228 (274)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch-----HHHHHHhhhcCCCCCccc--------------ccCHHHH
Confidence            433444577899999999999999999999643211     111111111110011000              0122366


Q ss_pred             HHHhhcCCCCccCchhHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ++...|...+|.+||+++++++
T Consensus       229 ~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         229 DFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             HHHHHHhhCChhhCcCHHHHhh
Confidence            7788899999999999999964

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=97.50  E-value=0.00011  Score=68.77  Aligned_cols=82  Identities=22%  Similarity=0.326  Sum_probs=54.5

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|+||||+++.|+++ |+.|....     +-...++.........+               .......+.++.
T Consensus       177 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~li  236 (260)
T cd05067         177 YGTFTIKSDVWSFGILLTEIVTYGRIPYPGM-----TNPEVIQNLERGYRMPR---------------PDNCPEELYELM  236 (260)
T ss_pred             cCCcCcccchHHHHHHHHHHHhCCCCCCCCC-----ChHHHHHHHHcCCCCCC---------------CCCCCHHHHHHH
Confidence            4456778999999999999999 88886432     22222222211110000               001123478889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ..|...+|.+||++.+++..|+.
T Consensus       237 ~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         237 RLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             HHHccCChhhCCCHHHHHHHhhc
Confidence            99999999999999999988763

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=97.49  E-value=8.4e-05  Score=69.23  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|+++|+.|.+.     .+....+..........+.+               .....+.++...
T Consensus       176 ~~~~~~~Dv~slG~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~li~~  235 (256)
T cd08220         176 KPYNQKSDIWALGCVLYELASLKRAFEA-----ANLPALVLKIMSGTFAPISD---------------RYSPDLRQLILS  235 (256)
T ss_pred             CCCCcccchHHHHHHHHHHHhCCCCccc-----CchHHHHHHHHhcCCCCCCC---------------CcCHHHHHHHHH
Confidence            4456789999999999999999988532     23333443332221111100               112336788899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       236 ~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         236 MLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             HccCChhhCCCHHHHhh
Confidence            99999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=97.49  E-value=0.0001  Score=69.16  Aligned_cols=86  Identities=21%  Similarity=0.327  Sum_probs=55.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++||||||+++.|++| |+.|....    .+ .+...........     .          ...++...+
T Consensus       173 E~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~----~~-~~~~~~~~~~~~~-----~----------~~~~~~~~l  232 (262)
T cd05071         173 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM----VN-REVLDQVERGYRM-----P----------CPPECPESL  232 (262)
T ss_pred             hHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC----Ch-HHHHHHHhcCCCC-----C----------CccccCHHH
Confidence            33345567889999999999999999 66664321    11 1111111111000     0          011234457


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      .++...|.+.+|.+||++.++.+.|+.
T Consensus       233 ~~li~~~l~~~p~~Rp~~~~~~~~l~~  259 (262)
T cd05071         233 HDLMCQCWRKEPEERPTFEYLQAFLED  259 (262)
T ss_pred             HHHHHHHccCCcccCCCHHHHHHHHHH
Confidence            899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=97.49  E-value=0.0001  Score=68.82  Aligned_cols=79  Identities=11%  Similarity=0.175  Sum_probs=53.0

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||||+++.|++||+.|.+.     .+...++..........+ ..              .....+.++.
T Consensus       175 ~~~~~~~~~Dv~slG~il~~l~~g~~~~~~-----~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~li  234 (257)
T cd08223         175 SNKPYNYKSDVWALGCCVYEMATLKHAFNA-----KDMNSLVYRIIEGKLPPM-PK--------------DYSPELGELI  234 (257)
T ss_pred             cCCCCCchhhhHHHHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhcCCCCC-cc--------------ccCHHHHHHH
Confidence            344567789999999999999999988542     233344433322211110 00              1123477889


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|.+.+|.+||++.++++
T Consensus       235 ~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         235 ATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             HHHhccCcccCCCHHHHhc
Confidence            9999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=97.47  E-value=5.6e-05  Score=70.44  Aligned_cols=80  Identities=23%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||+||+++.|++||+.|.......    .....  .....    .+.+.        ........+.++..
T Consensus       173 ~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~----~~~~~--~~~~~----~~~~~--------~~~~~~~~~~~~i~  234 (256)
T cd06612         173 EIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM----RAIFM--IPNKP----PPTLS--------DPEKWSPEFNDFVK  234 (256)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh----hhhhh--hccCC----CCCCC--------chhhcCHHHHHHHH
Confidence            345677899999999999999999996532111    01100  00000    00000        00011223677788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|.+.+|.+||++.||++
T Consensus       235 ~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         235 KCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             HHHhcChhhCcCHHHHhc
Confidence            999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=97.46  E-value=8.3e-05  Score=69.62  Aligned_cols=83  Identities=22%  Similarity=0.358  Sum_probs=54.1

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|+||||+++.|++| |+.|....-  ...+..+++....   ....               ......+.++
T Consensus       176 ~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~~~~---~~~~---------------~~~~~~~~~~  235 (260)
T cd05073         176 NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--NPEVIRALERGYR---MPRP---------------ENCPEELYNI  235 (260)
T ss_pred             ccCCcCccccchHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHhCCCC---CCCc---------------ccCCHHHHHH
Confidence            34456778999999999999999 777753211  1122222221111   0000               0112347788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...|...+|.+||++.++.+.|+.
T Consensus       236 i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         236 MMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             HHHHcccCcccCcCHHHHHHHHhc
Confidence            899999999999999999998874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=97.44  E-value=9.3e-05  Score=72.50  Aligned_cols=85  Identities=15%  Similarity=0.324  Sum_probs=54.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|+|+||+++.|+++ |..|......   . ....+..........  +.             .....+.++.
T Consensus       255 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~---~-~~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~  315 (343)
T cd05103         255 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI---D-EEFCRRLKEGTRMRA--PD-------------YTTPEMYQTM  315 (343)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCCCccc---c-HHHHHHHhccCCCCC--CC-------------CCCHHHHHHH
Confidence            3456778999999999999997 8888643211   0 111111111100000  00             0112377889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..|.+.+|.+||++.|+++.|+.+-
T Consensus       316 ~~cl~~~p~~Rps~~eil~~l~~~~  340 (343)
T cd05103         316 LDCWHGEPSQRPTFSELVEHLGNLL  340 (343)
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=97.43  E-value=0.00012  Score=68.28  Aligned_cols=80  Identities=20%  Similarity=0.385  Sum_probs=53.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||+|+++.|+++ |+.|.+..     +-....+.........     .          ...+...+.++.
T Consensus       181 ~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~li  240 (262)
T cd00192         181 DGIFTSKSDVWSFGVLLWEIFTLGATPYPGL-----SNEEVLEYLRKGYRLP-----K----------PEYCPDELYELM  240 (262)
T ss_pred             cCCcchhhccHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CccCChHHHHHH
Confidence            3356778999999999999999 58886542     2222222222111000     0          011234477889


Q ss_pred             hhcCCCCccCchhHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      ..|...+|.+||++.|+++.|
T Consensus       241 ~~~l~~~p~~Rps~~~l~~~l  261 (262)
T cd00192         241 LSCWQLDPEDRPTFSELVERL  261 (262)
T ss_pred             HHHccCCcccCcCHHHHHHhh
Confidence            999999999999999998876

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=97.43  E-value=0.00013  Score=69.45  Aligned_cols=87  Identities=17%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++||||||+++.|+++ |+.|...     ..-.++.+.........     .          .+.+...+
T Consensus       191 E~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~  250 (288)
T cd05061         191 ESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG-----LSNEQVLKFVMDGGYLD-----Q----------PDNCPERV  250 (288)
T ss_pred             HHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC-----C----------CCCCCHHH
Confidence            33334556778999999999999998 5666432     22233333222111100     0          11223458


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .++...|...+|.+||+|.++++.++..
T Consensus       251 ~~li~~~l~~~p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         251 TDLMRMCWQFNPKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             HHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence            8899999999999999999998888764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=97.41  E-value=0.00013  Score=69.85  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=49.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||+|||++.|+++|+.|...    ......+.... ......+-++             ......+.++..
T Consensus       190 ~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~----~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~l~~li~  251 (296)
T cd06654         190 RKAYGPKVDIWSLGIMAIEMIEGEPPYLN----ENPLRALYLIA-TNGTPELQNP-------------EKLSAIFRDFLN  251 (296)
T ss_pred             CCCCCccchHHHHHHHHHHHHhCCCCCCC----CCHHHhHHHHh-cCCCCCCCCc-------------cccCHHHHHHHH
Confidence            34456789999999999999999999643    11222222111 1110000000             011123567788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       252 ~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         252 RCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             HHCcCCcccCcCHHHHhh
Confidence            999999999999999965

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=97.40  E-value=0.00015  Score=68.69  Aligned_cols=80  Identities=15%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||||+++.|++||+.|.......     ..+........     +.          ........+.++.
T Consensus       174 ~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-----~~~~~~~~~~~-----~~----------~~~~~~~~~~~li  233 (277)
T cd06640         174 QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM-----RVLFLIPKNNP-----PT----------LTGEFSKPFKEFI  233 (277)
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH-----hHhhhhhcCCC-----CC----------CchhhhHHHHHHH
Confidence            3445678899999999999999999986432211     11111100000     00          1113445577899


Q ss_pred             hhcCCCCccCchhHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQD  481 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~  481 (495)
                      ..|...+|.+||++.++++.
T Consensus       234 ~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         234 DACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             HHHcccCcccCcCHHHHHhC
Confidence            99999999999999999653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=97.39  E-value=0.00023  Score=67.41  Aligned_cols=88  Identities=15%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCC--CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE--MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~--~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      |.......+.++||||||+++.|++||+.|.+..+...  .....+.+......     .+.+...         .....
T Consensus       163 E~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~  228 (279)
T cd06619         163 ERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDED-----PPVLPVG---------QFSEK  228 (279)
T ss_pred             eeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccC-----CCCCCCC---------cCCHH
Confidence            33334456789999999999999999999976543221  11112222111110     0111000         01123


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +.++...|...+|..||++.|+++
T Consensus       229 ~~~li~~~l~~~P~~Rp~~~eil~  252 (279)
T cd06619         229 FVHFITQCMRKQPKERPAPENLMD  252 (279)
T ss_pred             HHHHHHHHhhCChhhCCCHHHHhc
Confidence            567788899999999999999964

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=97.39  E-value=0.00016  Score=64.23  Aligned_cols=92  Identities=16%  Similarity=0.264  Sum_probs=65.4

Q ss_pred             hhhcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          377 LWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       377 l~~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      ++.+.....++++.||||+||.+-+|.-|..|.+..+..|-++           .+.|..+.+.-..+.      -.-..
T Consensus       209 Lf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSl-----------aLAv~n~q~s~P~~~------~yse~  271 (302)
T KOG2345|consen  209 LFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSL-----------ALAVQNAQISIPNSS------RYSEA  271 (302)
T ss_pred             heecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeE-----------EEeeeccccccCCCC------CccHH
Confidence            4566677889999999999999999999999987655433221           133444443211110      12344


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      +.++..+|...+|.+||+..+++..++.+
T Consensus       272 l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  272 LHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             HHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence            78889999999999999999998877653

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=97.38  E-value=0.00016  Score=67.61  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=51.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|+||+++.|+++|+.|.+..-     ...+.+.........     +          .......+.++..
T Consensus       184 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~l~~  243 (265)
T cd08217         184 HMSYDEKSDIWSLGCLIYELCALSPPFTARN-----QLQLASKIKEGKFRR-----I----------PYRYSSELNEVIK  243 (265)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHCCCcccCcC-----HHHHHHHHhcCCCCC-----C----------ccccCHHHHHHHH
Confidence            3446778999999999999999999965321     222222211111100     0          0112344778899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||+|.+|++
T Consensus       244 ~~l~~~p~~Rp~~~~il~  261 (265)
T cd08217         244 SMLNVDPDKRPSTEELLQ  261 (265)
T ss_pred             HHccCCcccCCCHHHHhh
Confidence            999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.36  E-value=5.8e-05  Score=72.17  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHH-----HHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR-----RWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~-----~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      .....+.++|||||||++.|++||+.|+...-..+ .+.     ++++....... .                ...+...
T Consensus       206 ~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~  267 (294)
T PHA02882        206 NGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-NLIHAAKCDFIKRLHEGKI-K----------------IKNANKF  267 (294)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch-HHHHHhHHHHHHHhhhhhh-c----------------cCCCCHH
Confidence            34456788999999999999999999975431111 111     12211111110 0                1123345


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      +.++.-.|...+|.+||++.++++.+
T Consensus       268 ~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        268 IYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            77888899999999999999998765

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=97.36  E-value=0.00013  Score=68.48  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+|+||+++.|+++|+.|...... ...+.++++.    .     .+.+....     ........+.++...|
T Consensus       183 ~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-~~~~~~~~~~----~-----~~~~~~~~-----~~~~~~~~~~~li~~~  247 (267)
T cd06610         183 GYDFKADIWSFGITAIELATGAAPYSKYPP-MKVLMLTLQN----D-----PPSLETGA-----DYKKYSKSFRKMISLC  247 (267)
T ss_pred             CcCcccchHhHhHHHHHHHhCCCCccccCh-hhhHHHHhcC----C-----CCCcCCcc-----ccccccHHHHHHHHHH
Confidence            457789999999999999999999754221 1112222211    1     00010000     0011234467888899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.++++
T Consensus       248 l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         248 LQKDPSKRPTAEELLK  263 (267)
T ss_pred             cCCChhhCcCHHHHhh
Confidence            9999999999999864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=97.36  E-value=0.00016  Score=72.35  Aligned_cols=84  Identities=17%  Similarity=0.300  Sum_probs=54.2

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|||+|||++.|+++ |+.|....     .............. ....+             ..+...+.++.
T Consensus       315 ~~~~~~~~DvwslGvil~e~l~~g~~P~~~~-----~~~~~~~~~~~~~~-~~~~p-------------~~~~~~l~~li  375 (401)
T cd05107         315 NNLYTTLSDVWSFGILLWEIFTLGGTPYPEL-----PMNEQFYNAIKRGY-RMAKP-------------AHASDEIYEIM  375 (401)
T ss_pred             CCCCCcHhHHHHHHHHHHHHHHcCCCCCCCC-----CchHHHHHHHHcCC-CCCCC-------------CCCCHHHHHHH
Confidence            3456778999999999999998 77785431     11111111111110 00000             01123477888


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|...+|.+||+|.++++.|+.+
T Consensus       376 ~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         376 QKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHH
Confidence            899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.36  E-value=0.00015  Score=76.41  Aligned_cols=88  Identities=22%  Similarity=0.339  Sum_probs=59.4

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccC-CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTA-KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tg-k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.-.....+.++|||||||+|.|++|- ..|.-. .....++.+|++...+   ++               ..+.|...+
T Consensus       491 Esl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~-~~~~~~l~~~l~~G~r---~~---------------~P~~c~~ei  551 (609)
T KOG0200|consen  491 ESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPG-IPPTEELLEFLKEGNR---ME---------------QPEHCSDEI  551 (609)
T ss_pred             HHhccCcccccchhhHHHHHHHHHhhCCCCCCCC-CCcHHHHHHHHhcCCC---CC---------------CCCCCCHHH
Confidence            444456678899999999999999985 445422 1111122333332221   10               122466668


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..+...|-..+|.+||++.+.++.++..
T Consensus       552 Y~iM~~CW~~~p~~RP~F~~~~~~~~~~  579 (609)
T KOG0200|consen  552 YDLMKSCWNADPEDRPTFSECVEFFEKH  579 (609)
T ss_pred             HHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence            8999999999999999999999888763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=9.2e-06  Score=73.09  Aligned_cols=100  Identities=22%  Similarity=0.286  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .++++|++-||+++++  .....++.|++|.|+-|+|+..  ..+..|++|+.|+|..|.|...-.-....++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4688888889998865  4466899999999999998743  34788899999999999885433334445688888888


Q ss_pred             cccccCCccCCc-----ccCCCCCCCEEE
Q 011044          135 LKYNMFHGKIPS-----TLSSCKQLRELS  158 (495)
Q Consensus       135 l~~n~l~~~~~~-----~l~~l~~L~~L~  158 (495)
                      |..|.-.+..+.     .+.-+|+|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            888776554332     234556666654

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=97.35  E-value=0.00015  Score=72.28  Aligned_cols=86  Identities=20%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+..+|||+|||+..||+||.-|.-..              .++.+.-++-......  ........|..+|-++...|.
T Consensus       570 fS~qSDVYaFGiV~YELltg~lPysi~--------------~~dqIifmVGrG~l~p--d~s~~~s~~pk~mk~Ll~~C~  633 (678)
T KOG0193|consen  570 FSFQSDVYAFGIVWYELLTGELPYSIQ--------------NRDQIIFMVGRGYLMP--DLSKIRSNCPKAMKRLLSDCW  633 (678)
T ss_pred             CCcccchhhhhHHHHHHHhCcCCcCCC--------------ChhheEEEecccccCc--cchhhhccCHHHHHHHHHHHH
Confidence            456799999999999999999885411              1122222222211100  000012257888999999999


Q ss_pred             CCCccCchhHHHHHHHHHHHHH
Q 011044          466 VESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..++.+||.+.+++.+|+.+..
T Consensus       634 ~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  634 KFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             hcCcccCccHHHHHHHHHHhhh
Confidence            9999999999999998887654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=2.1e-05  Score=70.79  Aligned_cols=101  Identities=28%  Similarity=0.299  Sum_probs=64.4

Q ss_pred             cccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccccc
Q 011044          199 LAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTL  278 (495)
Q Consensus       199 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  278 (495)
                      +.+.++|+..||.++..  .....++.|+.|.|+-|.|+..-|  +..|++|++|+|..|.|....-.....++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44566677777776532  344567777777777777765433  67777888888877777633233344567778888


Q ss_pred             ccccceeeecccc-----cccCCCCCCeee
Q 011044          279 SLYVNDFSGAIPK-----EIGNLTKLTDLY  303 (495)
Q Consensus       279 ~L~~n~l~~~~~~-----~l~~l~~L~~L~  303 (495)
                      .|..|...+..+.     .+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8877766554332     345566776664

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=97.31  E-value=0.00022  Score=66.25  Aligned_cols=81  Identities=19%  Similarity=0.410  Sum_probs=52.4

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|+||||+++.|++| |..|....     ....+........  ....             .......+.++.
T Consensus       169 ~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~-----~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~li  228 (251)
T cd05041         169 YGRYTSESDVWSYGILLWETFSLGDTPYPGM-----SNQQTRERIESGY--RMPA-------------PQLCPEEIYRLM  228 (251)
T ss_pred             cCCCCcchhHHHHHHHHHHHHhccCCCCccC-----CHHHHHHHHhcCC--CCCC-------------CccCCHHHHHHH
Confidence            3456778999999999999999 67775321     1111111111110  0000             011234577889


Q ss_pred             hhcCCCCccCchhHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ..|...+|.+||++.|+++.|+
T Consensus       229 ~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         229 LQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             HHHhccChhhCcCHHHHHHHhh
Confidence            9999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=97.31  E-value=0.00021  Score=67.24  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.|+++|+.|.+..    .....+.... ...     .....         ...+...+.++...|
T Consensus       192 ~~~~~~Dv~slGv~l~el~~g~~p~~~~----~~~~~~~~~~-~~~-----~~~~~---------~~~~~~~~~~li~~~  252 (272)
T cd06637         192 TYDFKSDLWSLGITAIEMAEGAPPLCDM----HPMRALFLIP-RNP-----APRLK---------SKKWSKKFQSFIESC  252 (272)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCcccc----CHHHHHHHHh-cCC-----CCCCC---------CCCcCHHHHHHHHHH
Confidence            4567899999999999999999996432    1111221110 000     00010         001223467788899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.++++
T Consensus       253 l~~~p~~Rpt~~~il~  268 (272)
T cd06637         253 LVKNHSQRPTTEQLMK  268 (272)
T ss_pred             cCCChhhCCCHHHHhh
Confidence            9999999999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.29  E-value=0.001  Score=54.78  Aligned_cols=105  Identities=23%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             hccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCC
Q 011044           74 ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ  153 (495)
Q Consensus        74 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  153 (495)
                      .|.++++|+.+.+.. .+.......|.++++|+.+.+.++ + ..++...+..+++|+.+.+.. .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-c-cccceeeeecccccccccccc-ccccccccccccccc
Confidence            345555555555543 233333344555555555555543 2 333444444454555555543 222222334444555


Q ss_pred             CCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044          154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLR  184 (495)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  184 (495)
                      |+.+.+..+ +...-...|.++ +|+.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            555555433 332223334443 55555544

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=97.28  E-value=0.00021  Score=67.20  Aligned_cols=82  Identities=10%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             ccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          386 VSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      .+.++|+||||+++.|+++ |+.|.......  ....+   ........+.++.+..       ...+   .+..+.-.|
T Consensus       186 ~~~~~DiwslG~~l~el~~~g~~p~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~-------~~~~---~~~~l~~~c  250 (269)
T cd05087         186 QTKESNVWSLGVTIWELFELGSQPYRHLSDE--QVLTY---TVREQQLKLPKPRLKL-------PLSD---RWYEVMQFC  250 (269)
T ss_pred             CCccchhHHHHHHHHHHHhCCCCCCCCCChH--HHHHH---HhhcccCCCCCCccCC-------CCCh---HHHHHHHHH
Confidence            4678999999999999996 98886432111  11111   1111111111222110       0111   133445567


Q ss_pred             CCCCccCchhHHHHHHHHH
Q 011044          465 TVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~~l~  483 (495)
                      . .+|.+||++.||++.|.
T Consensus       251 ~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         251 W-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             h-cCcccCCCHHHHHHHhc
Confidence            5 57999999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=97.28  E-value=0.00027  Score=67.13  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.|++||+.|....    .....+.+. .........++.             .+...+..+...
T Consensus       204 ~~~~~~~Dv~slGvi~~el~~g~~p~~~~----~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~li~~  265 (286)
T cd06638         204 STYDARCDVWSLGITAIELGDGDPPLADL----HPMRALFKI-PRNPPPTLHQPE-------------LWSNEFNDFIRK  265 (286)
T ss_pred             ccccchhhhhhHHHHHHHHhcCCCCCCCC----chhHHHhhc-cccCCCcccCCC-------------CcCHHHHHHHHH
Confidence            34577899999999999999999996432    111111110 000000111111             112236778899


Q ss_pred             cCCCCccCchhHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQD  481 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~  481 (495)
                      |.+.+|.+||++.|+++-
T Consensus       266 ~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         266 CLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             HccCCcccCCCHHHHhhc
Confidence            999999999999999753

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.27  E-value=0.00066  Score=55.91  Aligned_cols=13  Identities=46%  Similarity=0.608  Sum_probs=4.3

Q ss_pred             ccCCCCCcEEEcc
Q 011044           99 IFNMSSLLSIYFN  111 (495)
Q Consensus        99 l~~l~~L~~L~l~  111 (495)
                      |.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~   20 (129)
T PF13306_consen    8 FYNCSNLESITFP   20 (129)
T ss_dssp             TTT-TT--EEEET
T ss_pred             HhCCCCCCEEEEC
Confidence            3344444444443

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=97.26  E-value=0.00017  Score=67.77  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=48.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||||+++.|+++|+.|....-  ......|.......      .+.+          .......+..+...|.
T Consensus       188 ~~~~~Dv~slGvvl~~l~~g~~p~~~~~--~~~~~~~~~~~~~~------~~~~----------~~~~~~~~~~li~~~l  249 (268)
T cd06624         188 YGAPADIWSLGCTIVEMATGKPPFIELG--EPQAAMFKVGMFKI------HPEI----------PESLSAEAKNFILRCF  249 (268)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCCcccc--ChhhhHhhhhhhcc------CCCC----------CcccCHHHHHHHHHHc
Confidence            4578999999999999999999864321  11111111111110      0001          0011223667789999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.|++.
T Consensus       250 ~~~p~~Rpt~~~ll~  264 (268)
T cd06624         250 EPDPDKRASAHDLLQ  264 (268)
T ss_pred             CCCchhCCCHHHHHh
Confidence            999999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=97.26  E-value=0.00024  Score=66.74  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||||+++.|++||+.|....     .-...+........    .+.+-           ..+...++..
T Consensus       182 ~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~-----~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~l  241 (266)
T cd06651         182 SGEGYGRKADVWSLGCTVVEMLTEKPPWAEY-----EAMAAIFKIATQPT----NPQLP-----------SHISEHARDF  241 (266)
T ss_pred             CCCCCCchhhhHHHHHHHHHHHHCCCCcccc-----chHHHHHHHhcCCC----CCCCc-----------hhcCHHHHHH
Confidence            3445677899999999999999999985421     11122222111110    11110           0111123334


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +.|...+|.+||+|.||++
T Consensus       242 i~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         242 LGCIFVEARHRPSAEELLR  260 (266)
T ss_pred             HHHhcCChhhCcCHHHHhc
Confidence            4688889999999999853

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=97.25  E-value=0.00032  Score=65.63  Aligned_cols=82  Identities=16%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|+||+++.|++||+.|+.....  ....+-++.........+ +..             .....+.++..
T Consensus       174 ~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~--~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~l~~li~  237 (264)
T cd06623         174 GESYSYAADIWSLGLTLLECALGKFPFLPPGQ--PSFFELMQAICDGPPPSL-PAE-------------EFSPEFRDFIS  237 (264)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCccccc--cCHHHHHHHHhcCCCCCC-Ccc-------------cCCHHHHHHHH
Confidence            34567789999999999999999999754332  111121111111111000 000             02344777888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       238 ~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         238 ACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             HHccCChhhCCCHHHHHh
Confidence            899999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=97.25  E-value=0.00017  Score=67.52  Aligned_cols=86  Identities=22%  Similarity=0.362  Sum_probs=55.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++|+||||+++.|++| |+.|....     .-....+.........               ........+
T Consensus       174 E~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~-----~~~~~~~~~~~~~~~~---------------~~~~~~~~~  233 (261)
T cd05034         174 EAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM-----TNREVLEQVERGYRMP---------------RPPNCPEEL  233 (261)
T ss_pred             HHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCCCC---------------CCCCCCHHH
Confidence            33334456778999999999999998 88885321     1111222111110000               001123347


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      .++...|...+|.+||++.++++.++.
T Consensus       234 ~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         234 YDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             HHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            889999999999999999999888763

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=97.25  E-value=0.00021  Score=70.68  Aligned_cols=88  Identities=22%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.-...-+++|.|||||||+|-||+||..|+-..-.-          ++=.   .| -.+.+.-     ....+|..-..
T Consensus       281 EvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss----------AIIw---GV-GsNsL~L-----pvPstcP~Gfk  341 (904)
T KOG4721|consen  281 EVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS----------AIIW---GV-GSNSLHL-----PVPSTCPDGFK  341 (904)
T ss_pred             HHhhcCCcccccceehhHHHHHHHHhcCCCccccchh----------eeEE---ec-cCCcccc-----cCcccCchHHH
Confidence            4444556789999999999999999999996432100          0000   00 0111000     01224555566


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      -+...|...-|+.||++++++.-|+-.
T Consensus       342 lL~Kqcw~sKpRNRPSFrqil~HldIa  368 (904)
T KOG4721|consen  342 LLLKQCWNSKPRNRPSFRQILLHLDIA  368 (904)
T ss_pred             HHHHHHHhcCCCCCccHHHHHHHHhhc
Confidence            677889999999999999998776543

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.24  E-value=0.00021  Score=73.61  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|||||||++.|+++|+.|.+     +.+...++.......... ..+              .....+..+.
T Consensus       218 ~~~~~s~k~DVwSlGvilyeLltG~~Pf~-----~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~l~~li  277 (496)
T PTZ00283        218 RRKPYSKKADMFSLGVLLYELLTLKRPFD-----GENMEEVMHKTLAGRYDP-LPP--------------SISPEMQEIV  277 (496)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCC-----CCCHHHHHHHHhcCCCCC-CCC--------------CCCHHHHHHH
Confidence            34456778999999999999999999964     234445554443322111 001              1123367888


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.++++
T Consensus       278 ~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        278 TALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             HHHcccChhhCcCHHHHHh
Confidence            9999999999999999864

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=97.23  E-value=0.00025  Score=66.06  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=50.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||||+++.|+++|+.|.+.     .+....+..........+ ..              .....+.++...
T Consensus       175 ~~~~~~~Dv~slG~i~~~l~~g~~p~~~-----~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~li~~  234 (255)
T cd08219         175 MPYNNKSDIWSLGCILYELCTLKHPFQA-----NSWKNLILKVCQGSYKPL-PS--------------HYSYELRSLIKQ  234 (255)
T ss_pred             CCcCchhhhhhhchhheehhhccCCCCC-----CCHHHHHHHHhcCCCCCC-Cc--------------ccCHHHHHHHHH
Confidence            3467789999999999999999999653     122222222221111100 00              011235677889


Q ss_pred             cCCCCccCchhHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQD  481 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~  481 (495)
                      |...+|.+||++.+++..
T Consensus       235 ~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         235 MFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHhCCcccCCCHHHHhhc
Confidence            999999999999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=97.23  E-value=0.00029  Score=65.46  Aligned_cols=83  Identities=23%  Similarity=0.241  Sum_probs=52.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC-CCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS-ISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~-~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.......+.++|||+||+++.|+++|+.|.+...    +...-+..... .....     +          .......+
T Consensus       173 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l  233 (260)
T cd06606         173 EVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG----NPMAALYKIGSSGEPPE-----I----------PEHLSEEA  233 (260)
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----chHHHHHhccccCCCcC-----C----------CcccCHHH
Confidence            44444447888999999999999999999965422    11111111110 00000     0          00112346


Q ss_pred             HHHHhhcCCCCccCchhHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .++...|.+.+|.+||++.|+++
T Consensus       234 ~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         234 KDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             HHHHHHhCcCChhhCCCHHHHhh
Confidence            77788999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=97.23  E-value=0.00016  Score=74.22  Aligned_cols=88  Identities=15%  Similarity=0.316  Sum_probs=63.1

Q ss_pred             hhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      +|--...+.+..+|||||||++-|.++ |.+|.=++-.  .+..+-+++-++-                  ....+|...
T Consensus       803 PEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSN--QdVIkaIe~gyRL------------------PpPmDCP~a  862 (996)
T KOG0196|consen  803 PEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN--QDVIKAIEQGYRL------------------PPPMDCPAA  862 (996)
T ss_pred             hhHhhhcccCchhhccccceEEEEecccCCCcccccch--HHHHHHHHhccCC------------------CCCCCCcHH
Confidence            344455678889999999999999886 7788533221  1222222222211                  123378999


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      +-++.+.|.+.+..+||.+.++|..|+++
T Consensus       863 L~qLMldCWqkdR~~RP~F~qiV~~lDkl  891 (996)
T KOG0196|consen  863 LYQLMLDCWQKDRNRRPKFAQIVSTLDKL  891 (996)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence            99999999999999999999999999875

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=97.22  E-value=0.0003  Score=67.69  Aligned_cols=78  Identities=17%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++|||+||+++.|++||+.|....     +....+........     +.+         ....+...+..+...
T Consensus       189 ~~~~~~sDv~s~G~il~el~tg~~p~~~~-----~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~~li~~  249 (307)
T cd06607         189 GQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQNDS-----PTL---------SSNDWSDYFRNFVDS  249 (307)
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCCCCCc-----cHHHHHHHHhcCCC-----CCC---------CchhhCHHHHHHHHH
Confidence            34667899999999999999999986421     11111111111100     000         011122346778889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||+|.+++.
T Consensus       250 ~l~~~p~~Rp~~~~il~  266 (307)
T cd06607         250 CLQKIPQDRPSSEELLK  266 (307)
T ss_pred             HhcCChhhCcCHHHHhc
Confidence            99999999999999975

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=97.22  E-value=0.00019  Score=67.91  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC------------cceeeeccccccccccccchh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS------------VMEVVDANLLSWKDKHFMTKE  451 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~------------~~~v~d~~l~~~~~~~~~~~~  451 (495)
                      +..+.++|+|||||++.|+++|+.|....  +..+...+........            ......+........  ....
T Consensus       174 ~~~~~~~Di~slGv~l~el~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  249 (282)
T cd07831         174 GYYGPKMDIWAVGCVFFEILSLFPLFPGT--NELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLR--KLLP  249 (282)
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCcCCCCC--CHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHH--HHcc
Confidence            34567899999999999999998886431  1122222332222111            100000000000000  0001


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .....+.++...|...+|.+||++.++++
T Consensus       250 ~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         250 NASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            22455788999999999999999999864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=97.21  E-value=0.00027  Score=66.58  Aligned_cols=80  Identities=19%  Similarity=0.330  Sum_probs=49.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|||++|+++.|+++|+.|...    ......+.+. ........++...          ..+....+.++...|.
T Consensus       189 ~~~~~Dv~slG~~l~~l~~g~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~li~~~l  253 (272)
T cd06629         189 YSAKVDIWSLGCVVLEMFAGRRPWSD----EEAIAAMFKL-GNKRSAPPIPPDV----------SMNLSPVALDFLNACF  253 (272)
T ss_pred             CCccchhHHHHHHHHHHHhCCCCCcC----cchHHHHHHh-hccccCCcCCccc----------cccCCHHHHHHHHHHh
Confidence            56789999999999999999999642    1122222221 1111111111111          0012234667788999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||+|.+|++
T Consensus       254 ~~~p~~Rps~~~il~  268 (272)
T cd06629         254 TINPDNRPTARELLQ  268 (272)
T ss_pred             cCChhhCCCHHHHhh
Confidence            999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.19  E-value=0.00042  Score=69.34  Aligned_cols=83  Identities=22%  Similarity=0.301  Sum_probs=59.9

Q ss_pred             CCccccCCCcceeehhhhhhcccC-CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTA-KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tg-k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.|+|||.|||+|-|+.|- ..|.     -++++.+... .+...      -++        .+.+.|...|.++
T Consensus       439 AyNtFSiKSDVWAFGVLLWEIATYGMsPY-----PGidlSqVY~-LLEkg------yRM--------~~PeGCPpkVYeL  498 (1157)
T KOG4278|consen  439 AYNTFSIKSDVWAFGVLLWEIATYGMSPY-----PGIDLSQVYG-LLEKG------YRM--------DGPEGCPPKVYEL  498 (1157)
T ss_pred             cccccccchhhHHHHHHHHHHHhcCCCCC-----CCccHHHHHH-HHhcc------ccc--------cCCCCCCHHHHHH
Confidence            344678899999999999999874 4553     2566655322 22211      111        1345689999999


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...|..=+|.+||++.|+-+.++.
T Consensus       499 MraCW~WsPsDRPsFaeiHqafEt  522 (1157)
T KOG4278|consen  499 MRACWNWSPSDRPSFAEIHQAFET  522 (1157)
T ss_pred             HHHHhcCCcccCccHHHHHHHHHH
Confidence            999999999999999999877753

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=97.19  E-value=0.00033  Score=64.77  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||+||+++.|+++|+.|.+..     +...............+.+.             ......+.++..
T Consensus       171 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~i~  232 (253)
T cd05122         171 GKPYDYKADIWSLGITAIELAEGKPPYSEL-----PPMKALFKIATNGPPGLRNP-------------EKWSDEFKDFLK  232 (253)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCCC-----chHHHHHHHHhcCCCCcCcc-------------cccCHHHHHHHH
Confidence            344678899999999999999999986431     11122211111111111000             001233677888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       233 ~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         233 KCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHccCChhhCCCHHHHhc
Confidence            999999999999999864

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=97.18  E-value=0.00035  Score=66.54  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+|||||++.|+++|+.|...... ...+.++.    ......+.++             +.....+..+...|
T Consensus       209 ~~~~~~Di~slGvi~~el~~g~~p~~~~~~-~~~~~~~~----~~~~~~~~~~-------------~~~~~~l~~li~~~  270 (291)
T cd06639         209 SYDARCDVWSLGITAIELGDGDPPLFDMHP-VKTLFKIP----RNPPPTLLHP-------------EKWCRSFNHFISQC  270 (291)
T ss_pred             ccCCccchHHHHHHHHHHhhCCCCCCCCcH-HHHHHHHh----cCCCCCCCcc-------------cccCHHHHHHHHHH
Confidence            356789999999999999999998643211 01111111    1111111111             11123477889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||+|.|+++
T Consensus       271 l~~~p~~Rps~~~il~  286 (291)
T cd06639         271 LIKDFEARPSVTHLLE  286 (291)
T ss_pred             hhcChhhCcCHHHHhc
Confidence            9999999999999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=97.18  E-value=0.00041  Score=65.76  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.|+++|+.|....     +-.+-+..........+..+.             .....+.++...|
T Consensus       184 ~~~~~~Dv~slGvil~el~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~li~~~  245 (282)
T cd06643         184 PYDYKADVWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSEPPTLAQPS-------------RWSSEFKDFLKKC  245 (282)
T ss_pred             CCCccchhhhHHHHHHHHccCCCCcccc-----CHHHHHHHHhhcCCCCCCCcc-------------ccCHHHHHHHHHH
Confidence            3567899999999999999999885421     111111111111100110110             1123467788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.++++
T Consensus       246 l~~~p~~Rp~~~~il~  261 (282)
T cd06643         246 LEKNVDARWTTTQLLQ  261 (282)
T ss_pred             ccCChhhCcCHHHHhc
Confidence            9999999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.18  E-value=4.4e-05  Score=78.49  Aligned_cols=237  Identities=22%  Similarity=0.134  Sum_probs=123.9

Q ss_pred             CCCCCcEEEccCCcccccCC-hhHhhcCCCCCEEEcccc-cCCccC----CcccCCCCCCCEEEcccCc-CccccCcccc
Q 011044          101 NMSSLLSIYFNNNTLFGELP-PNFCNQMSNLESLFLKYN-MFHGKI----PSTLSSCKQLRELSLSSNY-FSGTIPKEIG  173 (495)
Q Consensus       101 ~l~~L~~L~l~~n~~~~~~p-~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~  173 (495)
                      .++.|+.+.+.++.-..... ..+...+++|+.|+++++ ......    ......+++|+.|+++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            36777777777764333321 233444788888888763 211111    1233456788888888776 5433333333


Q ss_pred             C-CCCCCEEEccCCC-CCCCCCh-hhhCcccccEEEecCCcCCCc--CchhhhcCCCCceeeCCCCcCCCCCCccccccc
Q 011044          174 N-LTKLTRLNLRQNK-LQGEIPE-ELGNLAELEMLWLQNNSLTGT--IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS  248 (495)
Q Consensus       174 ~-l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~  248 (495)
                      . +++|++|.+.++. ++...-. ....++.|++|++++|.....  +.....++++|+.+.+....          .+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence            3 7788888877776 4433222 234677888888887765311  22334456677665543321          144


Q ss_pred             ccceeeccCccccc--ccchhhhhCCccccccccccceeeecc-cccccCCCCCCeeecccccccccCCccccCCCcCCE
Q 011044          249 SLQKLYLSDNQLSG--ELPANIGNNLPSLQTLSLYVNDFSGAI-PKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEW  325 (495)
Q Consensus       249 ~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  325 (495)
                      .++.+.+.+..-..  .........+++++.+.+..+...... ...+.+++.|. ..+..         .......++.
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~  405 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRV  405 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccce
Confidence            55555554432211  233334446778888888777643222 23345555552 21111         1112222777


Q ss_pred             EeCcCCcccc-cCCcCccC-CCCCcEEEccCCcC
Q 011044          326 LMLSHNKLVG-VVPAPIFN-LSTLISLQLHNNSL  357 (495)
Q Consensus       326 L~l~~n~l~~-~~~~~~~~-l~~L~~L~l~~n~l  357 (495)
                      |+++.+.... ........ +..+..+++.++..
T Consensus       406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             EecccCccccccchHHHhhhhhccccCCccCccc
Confidence            7777775332 11111111 45566666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00019  Score=64.41  Aligned_cols=107  Identities=27%  Similarity=0.300  Sum_probs=63.2

Q ss_pred             CCccccccccccceeeecccccccCCCCCCeeecccc--cccccCCccccCCCcCCEEeCcCCcccc-cCCcCccCCCCC
Q 011044          271 NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN--KLQGKIPHEIGNLRKLEWLMLSHNKLVG-VVPAPIFNLSTL  347 (495)
Q Consensus       271 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L  347 (495)
                      .+..|+.|++.+..++..  ..+..+++|+.|.++.|  ++.+..+.....+++|+++++++|+++. .....+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            344556666655555421  23555677777777777  5554444444566788888888887763 122344566777


Q ss_pred             cEEEccCCcCceecCC---CCCCCCCChhhhhhhhc
Q 011044          348 ISLQLHNNSLSGSLPS---SADVPLPNLEELFLWEY  380 (495)
Q Consensus       348 ~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~~  380 (495)
                      ..|++.+|..+. .-.   ..+..+|+|.+|+-...
T Consensus       119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            788888887663 111   12334677777664433

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=97.16  E-value=0.00031  Score=68.42  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=26.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      |.......+.++|+||||+++.|++||+.|..
T Consensus       172 E~~~~~~~~~~~DiwslG~il~el~tg~~p~~  203 (331)
T cd06649         172 ERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP  203 (331)
T ss_pred             hHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            33334456778999999999999999999964

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=97.16  E-value=0.00029  Score=68.46  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=23.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCcc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDE  411 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~  411 (495)
                      .+.++|||||||++.|++||+.|.+.
T Consensus       187 ~~~~~DiwslG~il~el~~g~~pf~~  212 (327)
T cd08227         187 YDAKSDIYSVGITACELANGHVPFKD  212 (327)
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            56789999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.15  E-value=0.00031  Score=65.69  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||||+++.|+++|..+...    ..+-...... ....      ..+-          ......+.++...|.
T Consensus       182 ~~~~~DiwslG~~l~~l~~g~~~~~~----~~~~~~~~~~-~~~~------~~~~----------~~~~~~~~~li~~~l  240 (258)
T cd05078         182 LSLAADKWSFGTTLWEIFSGGDKPLS----ALDSQKKLQF-YEDR------HQLP----------APKWTELANLINQCM  240 (258)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCChh----hccHHHHHHH-HHcc------ccCC----------CCCcHHHHHHHHHHh
Confidence            56789999999999999999644211    1111111110 1100      0000          011234678899999


Q ss_pred             CCCccCchhHHHHHHHH
Q 011044          466 VESPIRESTQRKLLQDS  482 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~~l  482 (495)
                      +.+|.+||++++++++|
T Consensus       241 ~~~p~~Rps~~~il~~l  257 (258)
T cd05078         241 DYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             ccChhhCCCHHHHHHhc
Confidence            99999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.15  E-value=0.00025  Score=66.97  Aligned_cols=77  Identities=22%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             ccccCCCcceeehhhhhhc-ccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMET-FTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~-~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|+ ++|+.|....-.  .....+......          +..          .....+.++..
T Consensus       196 ~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~----------~~~----------~~~~~~~~li~  253 (274)
T cd05076         196 NSLSTAADKWSFGTTLLEICFDGEVPLKERTP--SEKERFYEKKHR----------LPE----------PSCKELATLIS  253 (274)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCccccCh--HHHHHHHHhccC----------CCC----------CCChHHHHHHH
Confidence            3457789999999999998 578887543211  111122111000          000          00123678889


Q ss_pred             hcCCCCccCchhHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .|.+.+|.+||+|.++++.|
T Consensus       254 ~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         254 QCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             HHcccChhhCcCHHHHHHhh
Confidence            99999999999999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=97.14  E-value=0.00035  Score=66.79  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+||||+++.|+++|+.|.....    .-.+..+.........+-+             ...+...+.++...|
T Consensus       194 ~~~~~~Di~slG~il~el~~g~~p~~~~~----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~li~~~  256 (296)
T cd06618         194 KYDIRADVWSLGISLVELATGQFPYKNCK----TEFEVLTKILQEEPPSLPP-------------NEGFSPDFCSFVDLC  256 (296)
T ss_pred             ccccchhHHHHHHHHHHHHhCCCCCCcch----hHHHHHHHHhcCCCCCCCC-------------CCCCCHHHHHHHHHH
Confidence            36678999999999999999999964311    1112222222111100000             001233477788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.++++
T Consensus       257 l~~~p~~Rp~~~~il~  272 (296)
T cd06618         257 LTKDHRKRPKYRELLQ  272 (296)
T ss_pred             ccCChhhCCCHHHHhc
Confidence            9999999999999964

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=97.13  E-value=0.00051  Score=63.96  Aligned_cols=79  Identities=18%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|+++|+.|.+.     .+....+........... .              ......+.++..
T Consensus       175 ~~~~~~~~Dv~slG~i~~~l~~g~~~~~~-----~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~i~  234 (256)
T cd08221         175 GVKYNFKSDIWALGCVLYELLTLKRTFDA-----TNPLNLVVKIVQGNYTPV-V--------------SVYSSELISLVH  234 (256)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCCCCC-c--------------cccCHHHHHHHH
Confidence            33456789999999999999999988542     223333433332221110 0              011233667788


Q ss_pred             hcCCCCccCchhHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQD  481 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~  481 (495)
                      .|...+|.+||++.++++.
T Consensus       235 ~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         235 SLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             HHcccCcccCCCHHHHhhC
Confidence            8999999999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=97.13  E-value=0.00043  Score=65.09  Aligned_cols=78  Identities=15%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||+||+++.|++||+.|.....    .... +..........+..             .......+.++...|
T Consensus       194 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~----~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~li~~~  255 (275)
T cd06608         194 SYDARSDVWSLGITAIELADGKPPLCDMH----PMRA-LFKIPRNPPPTLKS-------------PENWSKKFNDFISEC  255 (275)
T ss_pred             CccccccHHHhHHHHHHHHhCCCCccccc----hHHH-HHHhhccCCCCCCc-------------hhhcCHHHHHHHHHH
Confidence            45678999999999999999999964321    1111 11111111001100             011223466788899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       256 l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         256 LIKNYEQRPFMEELLE  271 (275)
T ss_pred             hhcChhhCcCHHHHhc
Confidence            9999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00029  Score=63.27  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=46.0

Q ss_pred             hhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCC--cccccCChhHhhcCCCCCEEEcccccCCc-cCCcccC
Q 011044           73 SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNN--TLFGELPPNFCNQMSNLESLFLKYNMFHG-KIPSTLS  149 (495)
Q Consensus        73 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~  149 (495)
                      .....+..|+.|++.+..++..  ..+..+++|++|.++.|  .+.+.++.-... +++|++|++++|++.. .....+.
T Consensus        37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhh
Confidence            3334455566666655555411  23445666777777777  444444333333 5666666666666552 1111233


Q ss_pred             CCCCCCEEEcccCcCc
Q 011044          150 SCKQLRELSLSSNYFS  165 (495)
Q Consensus       150 ~l~~L~~L~l~~n~l~  165 (495)
                      .+.+|..|++.+|..+
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            4455555555555444

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=97.11  E-value=0.00049  Score=63.12  Aligned_cols=81  Identities=16%  Similarity=0.125  Sum_probs=52.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|+||+++.|+++|+.|.+..    .+...+.+......... ...            .......+.++..
T Consensus       160 ~~~~~~~~Di~slG~~l~~l~~~~~p~~~~----~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~i~  222 (244)
T smart00220      160 GKGYGKAVDVWSLGVILYELLTGKPPFPGD----DQLLELFKKIGKPKPPF-PPP------------EWKISPEAKDLIR  222 (244)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCC----CcHHHHHHHHhccCCCC-ccc------------cccCCHHHHHHHH
Confidence            445677899999999999999999886432    12223333222111100 000            0002345788999


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       223 ~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      223 KLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHccCCchhccCHHHHhh
Confidence            999999999999999975

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=97.11  E-value=0.00051  Score=65.28  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=50.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+|+||+++.|++||+.|...    ..+. ..+............++             ......+.++...
T Consensus       191 ~~~~~~~Dv~slGvil~~l~~g~~p~~~----~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~l~~li~~  252 (286)
T cd06614         191 KDYGPKVDIWSLGIMCIEMAEGEPPYLR----EPPL-RALFLITTKGIPPLKNP-------------EKWSPEFKDFLNK  252 (286)
T ss_pred             CCCCCccccHHHHHHHHHHHhCCCCCCC----CCHH-HHHHHHHhcCCCCCcch-------------hhCCHHHHHHHHH
Confidence            3457789999999999999999998532    1111 11111111111111010             0122347788999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.++++
T Consensus       253 ~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         253 CLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             HhccChhhCcCHHHHhh
Confidence            99999999999999965

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=97.11  E-value=0.00041  Score=65.28  Aligned_cols=87  Identities=14%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |--.+...+.++||||||+.++|+.+|+-|.-....+.++....+.....+.     -|++-..         .+-.+..
T Consensus       247 ERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~p-----pP~lP~~---------~fS~ef~  312 (364)
T KOG0581|consen  247 ERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEP-----PPRLPEG---------EFSPEFR  312 (364)
T ss_pred             hhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCC-----CCCCCcc---------cCCHHHH
Confidence            4444556677899999999999999999986543222222222111111111     0111100         1122244


Q ss_pred             HHHhhcCCCCccCchhHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      ...-.|...+|.+||+..|.+
T Consensus       313 ~FV~~CL~Kdp~~R~s~~qLl  333 (364)
T KOG0581|consen  313 SFVSCCLRKDPSERPSAKQLL  333 (364)
T ss_pred             HHHHHHhcCCcccCCCHHHHh
Confidence            556789999999999999984

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=97.09  E-value=0.00037  Score=66.27  Aligned_cols=81  Identities=15%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|+++|+.|....    .....-+.......     .+.+....      .......+.++...|
T Consensus       186 ~~~~~~Di~slG~il~el~~g~~p~~~~----~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~l~~li~~~  250 (288)
T cd06616         186 GYDVRSDVWSLGITLYEVATGKFPYPKW----NSVFDQLTQVVKGD-----PPILSNSE------EREFSPSFVNFINLC  250 (288)
T ss_pred             CCcchhhhhHHHHHHHHHHhCCCCchhc----chHHHHHhhhcCCC-----CCcCCCcC------CCccCHHHHHHHHHH
Confidence            4667899999999999999999995431    11111111111111     01111100      011233477888999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.+|++
T Consensus       251 l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         251 LIKDESKRPKYKELLE  266 (288)
T ss_pred             ccCChhhCcCHHHHhc
Confidence            9999999999999964

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=97.09  E-value=0.00054  Score=64.84  Aligned_cols=79  Identities=20%  Similarity=0.307  Sum_probs=49.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||||+++.|+++|+.|....     +..+.+..........+..+.             .....+.++...
T Consensus       183 ~~~~~~sDi~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~li~~  244 (280)
T cd06611         183 NPYDYKADIWSLGITLIELAQMEPPHHEL-----NPMRVLLKILKSEPPTLDQPS-------------KWSSSFNDFLKS  244 (280)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCcccC-----CHHHHHHHHhcCCCCCcCCcc-------------cCCHHHHHHHHH
Confidence            34567899999999999999999996432     111222211111100000000             112235667788


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.+|++
T Consensus       245 ~l~~~p~~Rps~~~il~  261 (280)
T cd06611         245 CLVKDPDDRPTAAELLK  261 (280)
T ss_pred             HhccChhhCcCHHHHhc
Confidence            99999999999999964

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=97.08  E-value=0.00033  Score=66.46  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHH--h---CCCcceeeecc------ccccccccc---cch
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDL--L---SISVMEVVDAN------LLSWKDKHF---MTK  450 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~--~---~~~~~~v~d~~------l~~~~~~~~---~~~  450 (495)
                      ..+.++||||||+++.|++||+.|..    ++.....+.+..  .   ........+..      .........   ...
T Consensus       177 ~~~~~~Dv~slG~~l~el~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (286)
T cd07846         177 KYGRAVDIWAVGCLVTEMLTGEPLFP----GDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRF  252 (286)
T ss_pred             ccCchHhHHHHHHHHHHHHcCCCCCC----CCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhC
Confidence            35678999999999999999987753    222222221111  0   00000000000      000000000   000


Q ss_pred             hhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          451 EQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       451 ~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ......+.++...|...+|.+||+|.++++
T Consensus       253 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         253 PKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             CCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            122345788999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=97.08  E-value=0.00042  Score=68.20  Aligned_cols=77  Identities=18%  Similarity=0.313  Sum_probs=47.4

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++|||||||++.|+++|+.|....-.     ..|...........  .+..          ...+-..+.++...|..
T Consensus       251 ~~~~DvwslGvil~el~~g~~pf~~~~~-----~~~~~~~~~~~~~~--~~~~----------~~~~~~~l~~li~~~l~  313 (353)
T PLN00034        251 GYAGDIWSLGVSILEFYLGRFPFGVGRQ-----GDWASLMCAICMSQ--PPEA----------PATASREFRHFISCCLQ  313 (353)
T ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCC-----ccHHHHHHHHhccC--CCCC----------CCccCHHHHHHHHHHcc
Confidence            4579999999999999999999652111     12222111100000  0000          00112236677889999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       314 ~~P~~Rpt~~ell~  327 (353)
T PLN00034        314 REPAKRWSAMQLLQ  327 (353)
T ss_pred             CChhhCcCHHHHhc
Confidence            99999999999965

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=97.08  E-value=0.00044  Score=66.16  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|++||+.|.+.    .... ..+.............+             ......+.++..
T Consensus       189 ~~~~~~~~Dv~slGvil~~lltg~~pf~~----~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~li~  250 (296)
T cd06655         189 RKAYGPKVDIWSLGIMAIEMVEGEPPYLN----ENPL-RALYLIATNGTPELQNP-------------EKLSPIFRDFLN  250 (296)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCC----CCHH-HHHHHHHhcCCcccCCc-------------ccCCHHHHHHHH
Confidence            34467789999999999999999999643    1111 11111111110000000             011223667788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.+++.
T Consensus       251 ~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         251 RCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             HHhhcChhhCCCHHHHhh
Confidence            999999999999999953

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.07  E-value=0.00072  Score=68.71  Aligned_cols=85  Identities=20%  Similarity=0.344  Sum_probs=60.4

Q ss_pred             hhcCCCccccCCCcceeehhhhhhcccC-CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFTA-KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~tg-k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      .|+...++.+.++|||.|||-+-||||+ ..|+-..-  +..            +++-+|..-      .-..-+.|...
T Consensus       284 PEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~--g~q------------IL~~iD~~e------rLpRPk~csed  343 (1039)
T KOG0199|consen  284 PESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCR--GIQ------------ILKNIDAGE------RLPRPKYCSED  343 (1039)
T ss_pred             HhHhccccccccchhhhhhhhHHhhhccCCCCCCCCC--HHH------------HHHhccccc------cCCCCCCChHH
Confidence            4666788899999999999999999985 55653211  111            222223110      00123468889


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      +.+++..|.+..|.+||++.++++.+
T Consensus       344 IY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  344 IYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             HHHHHHHhccCCccccccHHHHHHhH
Confidence            99999999999999999999998655

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=97.07  E-value=0.00054  Score=65.16  Aligned_cols=80  Identities=19%  Similarity=0.215  Sum_probs=51.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|+++|+.|...    . +-..+++.......     +.+..        .......+.++..
T Consensus       189 ~~~~~~~~Dv~slGv~l~ell~g~~p~~~----~-~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~l~~li~  250 (285)
T cd06648         189 RLPYGTEVDIWSLGIMVIEMVDGEPPYFN----E-PPLQAMKRIRDNLP-----PKLKN--------LHKVSPRLRSFLD  250 (285)
T ss_pred             CCCCCCcccHHHHHHHHHHHHhCCCCCcC----C-CHHHHHHHHHhcCC-----CCCcc--------cccCCHHHHHHHH
Confidence            34456789999999999999999998542    1 11233332222110     01100        0011234778899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       251 ~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         251 RMLVRDPAQRATAAELLN  268 (285)
T ss_pred             HHcccChhhCcCHHHHcc
Confidence            999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=97.07  E-value=0.00049  Score=64.02  Aligned_cols=81  Identities=22%  Similarity=0.466  Sum_probs=52.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      .....+.++|+|++|+++.|+++ |+.|.+.     .+.....+..........               .......+.++
T Consensus       177 ~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~  236 (258)
T smart00219      177 KDGKFTSKSDVWSFGVLLWEIFTLGESPYPG-----MSNEEVLEYLKKGYRLPK---------------PENCPPEIYKL  236 (258)
T ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHhcCCCCCC---------------CCcCCHHHHHH
Confidence            34556788999999999999998 5666432     233333332222111100               00123347788


Q ss_pred             HhhcCCCCccCchhHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      ...|...+|.+||++.|+++.|
T Consensus       237 i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      237 MLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             HHHHCcCChhhCcCHHHHHhhC
Confidence            9999999999999999998753

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=97.06  E-value=0.00029  Score=66.95  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=50.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCccee--eeccccc-----cccccc---cchh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISVMEV--VDANLLS-----WKDKHF---MTKE  451 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~~~v--~d~~l~~-----~~~~~~---~~~~  451 (495)
                      ..+.++||||||+++.|+++|+.|....-  ..+.........   +......  .++....     ......   ....
T Consensus       178 ~~~~~~Dv~slG~~l~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (288)
T cd07833         178 NYGKPVDVWAIGCIMAELLDGEPLFPGDS--DIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPG  255 (288)
T ss_pred             CcCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCC
Confidence            45678999999999999999998864311  111111111111   0000000  0110000     000000   0000


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .....+.++...|...+|.+||++.++++
T Consensus       256 ~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         256 KVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             ccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            12455888999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.05  E-value=0.00018  Score=70.12  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc----ceeeecc-------ccccccc-cccchh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV----MEVVDAN-------LLSWKDK-HFMTKE  451 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~----~~v~d~~-------l~~~~~~-~~~~~~  451 (495)
                      ...+.++|||||||++.|++||+.|....  .......++........    ..+....       +...... ......
T Consensus       183 ~~~~~~~DvwSlGvvl~el~tg~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  260 (338)
T cd07859         183 SKYTPAIDIWSIGCIFAEVLTGKPLFPGK--NVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFP  260 (338)
T ss_pred             cccCchhHHHHHHHHHHHHHcCCCCCCCC--ChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcC
Confidence            34567899999999999999999885321  01111111111111100    0000000       0000000 000000


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .....+.++...|...+|.+||++.|+++
T Consensus       261 ~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         261 NADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             CCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            11234678899999999999999999964

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=97.05  E-value=0.00058  Score=64.40  Aligned_cols=82  Identities=23%  Similarity=0.376  Sum_probs=52.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++||||||+++.|+++ |..|...     ..-...+...........              ....+...+.++.
T Consensus       192 ~~~~~~~~Di~slG~~l~~l~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~i  252 (275)
T cd05046         192 EDDFSTKSDVWSFGVLMWEVFTQGELPFYG-----LSDEEVLNRLQAGKLELP--------------VPEGCPSRLYKLM  252 (275)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCccc-----cchHHHHHHHHcCCcCCC--------------CCCCCCHHHHHHH
Confidence            3445678999999999999998 5666422     111222222111111000              0012234588899


Q ss_pred             hhcCCCCccCchhHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ..|...+|.+||++.|++..|.
T Consensus       253 ~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         253 TRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             HHHcCCCcccCCCHHHHHHHhc
Confidence            9999999999999999988875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=97.03  E-value=0.00053  Score=64.48  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|+++ |+.|....-    +. .-...........+.++.+..          .....+.++..
T Consensus       184 ~~~~~~~DiwslG~~l~el~~~~~~p~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  248 (269)
T cd05042         184 KDQTKKSNIWSLGVTMWELFTAADQPYPDLS----DE-QVLKQVVREQDIKLPKPQLDL----------KYSDRWYEVMQ  248 (269)
T ss_pred             cccchhhHHHHHHHHHHHHHhCCCCCCCcCC----HH-HHHHHHhhccCccCCCCcccc----------cCCHHHHHHHH
Confidence            345778999999999999999 666653211    11 111111111111111221110          11122334455


Q ss_pred             hcCCCCccCchhHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .|. .+|.+||++.+|++.|
T Consensus       249 ~~~-~dp~~Rpt~~~v~~~l  267 (269)
T cd05042         249 FCW-LDPETRPTAEEVHELL  267 (269)
T ss_pred             HHh-cCcccccCHHHHHHHh
Confidence            565 4999999999998876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=97.02  E-value=0.00052  Score=64.31  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|||+||+++.|++||+.|....-    ..............    .+.+.          ......+..+...
T Consensus       183 ~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~----~~~~~~~~~~~~~~----~~~~~----------~~~~~~~~~~i~~  244 (265)
T cd06631         183 SGYGRKSDIWSIGCTVFEMATGKPPLASMD----RLAAMFYIGAHRGL----MPRLP----------DSFSAAAIDFVTS  244 (265)
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCCccccCC----hHHHHHHhhhccCC----CCCCC----------CCCCHHHHHHHHH
Confidence            345678999999999999999999964321    11111100000000    01110          0122336778899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.+++.
T Consensus       245 ~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         245 CLTRDQHERPSALQLLR  261 (265)
T ss_pred             HhcCCcccCCCHHHHhc
Confidence            99999999999999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=97.02  E-value=0.00062  Score=65.83  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=49.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++||||||+++.|+++|+.|....-. ...+..+.+...+         ..         ........+.++...
T Consensus       199 ~~~~~~~Dv~slGvil~el~~g~~p~~~~~~-~~~~~~~~~~~~~---------~~---------~~~~~~~~l~~li~~  259 (317)
T cd06635         199 GQYDGKVDVWSLGITCIELAERKPPLFNMNA-MSALYHIAQNESP---------TL---------QSNEWSDYFRNFVDS  259 (317)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCCCccH-HHHHHHHHhccCC---------CC---------CCccccHHHHHHHHH
Confidence            4567789999999999999999998532110 0111111111100         00         000112336678889


Q ss_pred             cCCCCccCchhHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQD  481 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~  481 (495)
                      |...+|.+||++.++++.
T Consensus       260 ~l~~~p~~Rpt~~~il~~  277 (317)
T cd06635         260 CLQKIPQDRPTSEELLKH  277 (317)
T ss_pred             HccCCcccCcCHHHHHhC
Confidence            999999999999999764

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=97.02  E-value=0.00071  Score=63.19  Aligned_cols=80  Identities=21%  Similarity=0.337  Sum_probs=49.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+||||+++.||+||+.|.....    ....-.. ...   .+...+.+.        ........+.++...|
T Consensus       180 ~~~~~~Di~slG~~l~~~~tg~~p~~~~~----~~~~~~~-~~~---~~~~~~~~~--------~~~~~~~~~~~li~~~  243 (262)
T cd06613         180 GYDGKCDIWALGITAIELAELQPPMFDLH----PMRALFL-ISK---SNFPPPKLK--------DKEKWSPVFHDFIKKC  243 (262)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCC----HHHHHHH-HHh---ccCCCcccc--------chhhhhHHHHHHHHHH
Confidence            56678999999999999999999965321    1111000 000   000001110        0111234477899999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.+|+.
T Consensus       244 l~~~p~~Rpt~~~il~  259 (262)
T cd06613         244 LTKDPKKRPTATKLLQ  259 (262)
T ss_pred             cCCChhhCCCHHHHhc
Confidence            9999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=97.01  E-value=0.00074  Score=65.01  Aligned_cols=78  Identities=18%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++||||||+++.|+++|+.|....     .-..++........     +...         .......+..+...
T Consensus       189 ~~~~~~~Di~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~li~~  249 (308)
T cd06634         189 GQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQNES-----PALQ---------SGHWSEYFRNFVDS  249 (308)
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCCCccc-----cHHHHHHHHhhcCC-----CCcC---------cccccHHHHHHHHH
Confidence            34667899999999999999999985331     11111111111110     0000         00122336678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.+|++
T Consensus       250 cl~~~P~~Rp~~~~ll~  266 (308)
T cd06634         250 CLQKIPQDRPTSEVLLK  266 (308)
T ss_pred             HhhCCcccCCCHHHHhh
Confidence            99999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=97.01  E-value=0.00064  Score=64.29  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|++||+.|....     .-..++.........     .+          .......+.++..
T Consensus       175 ~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~-----~~----------~~~~~~~~~~~i~  234 (277)
T cd06641         175 QSAYDSKADIWSLGITAIELAKGEPPHSEL-----HPMKVLFLIPKNNPP-----TL----------EGNYSKPLKEFVE  234 (277)
T ss_pred             cCCCCchhhHHHHHHHHHHHHcCCCCCCcc-----chHHHHHHHhcCCCC-----CC----------CcccCHHHHHHHH
Confidence            345667899999999999999999986432     111222221111110     01          0012233667889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||+|.++++
T Consensus       235 ~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         235 ACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             HHccCChhhCcCHHHHHh
Confidence            999999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.01  E-value=0.00018  Score=73.99  Aligned_cols=224  Identities=23%  Similarity=0.129  Sum_probs=132.2

Q ss_pred             cccccCChhHhhcCCCCCEEEcccccCCcc--CCcccCCCCCCCEEEcccC-cCcccc----CccccCCCCCCEEEccCC
Q 011044          114 TLFGELPPNFCNQMSNLESLFLKYNMFHGK--IPSTLSSCKQLRELSLSSN-YFSGTI----PKEIGNLTKLTRLNLRQN  186 (495)
Q Consensus       114 ~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~L~~n  186 (495)
                      .....+...+...+++|+.|.+..+.-...  .-.....+++|+.|+++++ ......    ......+.+|+.|+++.+
T Consensus       174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  253 (482)
T KOG1947|consen  174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC  253 (482)
T ss_pred             cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence            333333344555579999999998853323  3345578899999999873 211111    122345688999999998


Q ss_pred             C-CCCCCChhhh-CcccccEEEecCCc-CCCcC-chhhhcCCCCceeeCCCCcCCCC--CCcccccccccceeeccCccc
Q 011044          187 K-LQGEIPEELG-NLAELEMLWLQNNS-LTGTI-PSSIFSLSSLLNLDLSLNNFTGI--IPSSIGNLSSLQKLYLSDNQL  260 (495)
Q Consensus       187 ~-l~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~l~~n~l  260 (495)
                      . ++...-..+. .+++|+.|.+.++. ++... ......+++|++|+++++.....  +......+++++.|.+.... 
T Consensus       254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-  332 (482)
T KOG1947|consen  254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-  332 (482)
T ss_pred             hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-
Confidence            8 5544444444 37899999988777 55332 23345688899999998865321  22223456666665543321 


Q ss_pred             ccccchhhhhCCcccccccccccee---eecccccccCCCCCCeeecccccccccC-CccccCCCcCCEEeCcCCccccc
Q 011044          261 SGELPANIGNNLPSLQTLSLYVNDF---SGAIPKEIGNLTKLTDLYLDQNKLQGKI-PHEIGNLRKLEWLMLSHNKLVGV  336 (495)
Q Consensus       261 ~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~l~~n~l~~~  336 (495)
                                .++.++.+.+.+...   ..........+++++.+.+.++...... ...+..++.|+ ..+..+     
T Consensus       333 ----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~-----  396 (482)
T KOG1947|consen  333 ----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR-----  396 (482)
T ss_pred             ----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-----
Confidence                      134455555544322   1223345677889999999988744322 24455666663 222211     


Q ss_pred             CCcCccCCCCCcEEEccCCcCc
Q 011044          337 VPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       337 ~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                          ......++.|+++.+...
T Consensus       397 ----~~~~~~l~~L~l~~~~~~  414 (482)
T KOG1947|consen  397 ----LCRSDSLRVLNLSDCRLV  414 (482)
T ss_pred             ----hccCCccceEecccCccc
Confidence                112222888888888643

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=97.00  E-value=0.00067  Score=64.94  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|+++|+.|....  ........++   .....     ....        .......+.++..
T Consensus       191 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~--~~~~~~~~~~---~~~~~-----~~~~--------~~~~~~~l~~~i~  252 (297)
T cd06659         191 RTPYGTEVDIWSLGIMVIEMVDGEPPYFSD--SPVQAMKRLR---DSPPP-----KLKN--------AHKISPVLRDFLE  252 (297)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHh---ccCCC-----Cccc--------cCCCCHHHHHHHH
Confidence            345677899999999999999999996421  1111111111   11100     0000        0001122567788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       253 ~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         253 RMLTREPQERATAQELLD  270 (297)
T ss_pred             HHhcCCcccCcCHHHHhh
Confidence            999999999999999976

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=96.99  E-value=0.00098  Score=64.14  Aligned_cols=97  Identities=11%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc-ceeeec-cccccccc--------------c
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV-MEVVDA-NLLSWKDK--------------H  446 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~-~~v~d~-~l~~~~~~--------------~  446 (495)
                      ....+.++|+|+||+++.|++||+.|.....  ...+..+......... .....+ ........              .
T Consensus       172 ~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (308)
T cd06615         172 GTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD--AKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNE  249 (308)
T ss_pred             CCCCCccchHHHHHHHHHHHHhCCCCCCCcc--hhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcC
Confidence            3446678999999999999999999964321  1122222211110000 000000 00000000              0


Q ss_pred             ---ccchhhHHHHHHHHHhhcCCCCccCchhHHHHHHH
Q 011044          447 ---FMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQD  481 (495)
Q Consensus       447 ---~~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~  481 (495)
                         .......-..+.++...|...+|.+||++.+|++.
T Consensus       250 ~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         250 PPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             CCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               00000112347788999999999999999999653

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=96.99  E-value=0.00058  Score=65.00  Aligned_cols=95  Identities=14%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC--C--C-ccee-eeccccccccccc--cchhhHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS--I--S-VMEV-VDANLLSWKDKHF--MTKEQCMS  455 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~--~--~-~~~v-~d~~l~~~~~~~~--~~~~~~~~  455 (495)
                      ...+.++|||||||++.|+++|+.|....-  .......+.....  .  . ..++ .+...........  ......-.
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~~f~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (290)
T cd07862         184 SSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDE  261 (290)
T ss_pred             CCCCCccchHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCH
Confidence            345678999999999999999998854211  1111112211110  0  0 0000 0000000000000  00001112


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.++...|...+|.+||++.|+++
T Consensus       262 ~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         262 LGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             HHHHHHHHHhccCchhcCCHHHHhc
Confidence            3567899999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=96.99  E-value=0.00061  Score=65.79  Aligned_cols=78  Identities=14%  Similarity=0.197  Sum_probs=49.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++||||||+++.|+++|+.|....     +-...+.............+              .....+..+...
T Consensus       195 ~~~~~~sDv~slGvil~el~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~li~~  255 (313)
T cd06633         195 GQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQNDSPTLQSN--------------EWTDSFRGFVDY  255 (313)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHhcCCCCCCcc--------------ccCHHHHHHHHH
Confidence            34566899999999999999999986432     11222222221111000000              011235677889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.+++.
T Consensus       256 ~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         256 CLQKIPQERPASAELLR  272 (313)
T ss_pred             HccCChhhCcCHHHHhc
Confidence            99999999999999964

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=96.99  E-value=0.00082  Score=62.49  Aligned_cols=78  Identities=14%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|++|++++|+++|+.|.+..     +...............+               .......+..+..
T Consensus       175 ~~~~~~~~D~~slG~~~~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~li~  234 (256)
T cd08530         175 GRPYSYKSDIWSLGCLLYEMATFAPPFEAR-----SMQDLRYKVQRGKYPPI---------------PPIYSQDLQNFIR  234 (256)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhcCCCCCC---------------chhhCHHHHHHHH
Confidence            344567899999999999999999996432     21121111111111110               0112234788899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       235 ~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         235 SMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             HHcCCCcccCCCHHHHhc
Confidence            999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=96.99  E-value=0.00068  Score=64.40  Aligned_cols=28  Identities=11%  Similarity=0.120  Sum_probs=23.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|+|||||++.|+++|+.|..
T Consensus       175 ~~~~~~~~DiwslGvil~el~~g~~pf~  202 (287)
T cd07848         175 GAPYGKAVDMWSVGCILGELSDGQPLFP  202 (287)
T ss_pred             CCCCCCchhHHhHHHHHHHHHhCCCCCC
Confidence            3445678999999999999999998854

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=96.98  E-value=0.00058  Score=63.84  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|+++|+.|....    .......+ .......    ..+          ....-..+..+...
T Consensus       182 ~~~~~~~Di~slG~il~el~~g~~p~~~~----~~~~~~~~-~~~~~~~----~~~----------~~~~~~~~~~li~~  242 (263)
T cd06625         182 EGYGRKADVWSVGCTVVEMLTEKPPWAEF----EAMAAIFK-IATQPTN----PQL----------PSHVSPDARNFLRR  242 (263)
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCcccc----chHHHHHH-HhccCCC----CCC----------CccCCHHHHHHHHH
Confidence            34667899999999999999999985321    11111111 1111000    000          00112336678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       243 ~l~~~p~~Rpt~~~ll~  259 (263)
T cd06625         243 TFVENAKKRPSAEELLR  259 (263)
T ss_pred             HhhcCcccCCCHHHHhh
Confidence            99999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=96.98  E-value=0.00057  Score=64.54  Aligned_cols=76  Identities=21%  Similarity=0.308  Sum_probs=49.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+|+||+++.|+++|+.|.+..     ...+++.......     .+.+..         ......+.++...|.
T Consensus       179 ~~~~~Dv~slG~~l~~ll~g~~p~~~~-----~~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~~~i~~~l  239 (277)
T cd06917         179 YDTKADIWSLGITIYEMATGNPPYSDV-----DAFRAMMLIPKSK-----PPRLED---------NGYSKLLREFVAACL  239 (277)
T ss_pred             cccchhHHHHHHHHHHHHhCCCCCCCC-----ChhhhhhccccCC-----CCCCCc---------ccCCHHHHHHHHHHc
Confidence            467899999999999999999996431     2222222111110     111100         012334777888999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.+++.
T Consensus       240 ~~~p~~R~~~~~il~  254 (277)
T cd06917         240 DEEPKERLSAEELLK  254 (277)
T ss_pred             CCCcccCcCHHHHhh
Confidence            999999999999964

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=96.97  E-value=0.00089  Score=63.84  Aligned_cols=77  Identities=14%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||||+++.|++||+.|....     +-...+.............+             ......+..+...|.
T Consensus       192 ~~~~~Dv~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~li~~~l  253 (292)
T cd06644         192 YDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSEPPTLSQP-------------SKWSMEFRDFLKTAL  253 (292)
T ss_pred             CCchhhhHhHHHHHHHHhcCCCCCccc-----cHHHHHHHHhcCCCccCCCC-------------cccCHHHHHHHHHHh
Confidence            466899999999999999999885321     11122222211111000000             011233667888899


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.++++
T Consensus       254 ~~~p~~Rp~~~~il~  268 (292)
T cd06644         254 DKHPETRPSAAQLLE  268 (292)
T ss_pred             cCCcccCcCHHHHhc
Confidence            999999999999954

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=96.95  E-value=0.00059  Score=63.61  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=48.9

Q ss_pred             cccCCCcceeehhhhhhcccC-CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTA-KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tg-k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++|+||||+++.|+++| ..|.....     -..+........        ....         .....+.++...
T Consensus       182 ~~~~~~Di~slG~~~~~l~~~~~~p~~~~~-----~~~~~~~~~~~~--------~~~~---------~~~~~~~~li~~  239 (259)
T cd05037         182 SLTIAADKWSFGTTLLEICSNGEEPLSTLS-----SSEKERFYQDQH--------RLPM---------PDCAELANLINQ  239 (259)
T ss_pred             CcchhhHHHHHHHHHHHHHhCCCCCcccCC-----chhHHHHHhcCC--------CCCC---------CCchHHHHHHHH
Confidence            467789999999999999995 45543211     111211111000        0000         001457789999


Q ss_pred             cCCCCccCchhHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l  482 (495)
                      |...+|.+||++.+|++.|
T Consensus       240 ~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         240 CWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             HhccChhhCCCHHHHHHhc
Confidence            9999999999999998876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=96.95  E-value=0.0007  Score=64.61  Aligned_cols=79  Identities=22%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|+++|+.|...    .... .-+.. ....    ..+.+....        .....+..+...
T Consensus       193 ~~~~~~~Dv~slGvil~el~~g~~p~~~----~~~~-~~~~~-~~~~----~~~~~~~~~--------~~~~~~~~li~~  254 (292)
T cd06658         193 LPYGTEVDIWSLGIMVIEMIDGEPPYFN----EPPL-QAMRR-IRDN----LPPRVKDSH--------KVSSVLRGFLDL  254 (292)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCC----CCHH-HHHHH-HHhc----CCCcccccc--------ccCHHHHHHHHH
Confidence            3456789999999999999999999532    1111 11111 1100    011110000        011124456667


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       255 ~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         255 MLVREPSQRATAQELLQ  271 (292)
T ss_pred             HccCChhHCcCHHHHhh
Confidence            89999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=96.95  E-value=0.0004  Score=64.67  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=47.6

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC-CCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS-ISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~-~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      .+.++|+|+||+++.|+++|+.|.+...    .. ..+..... .....+ .+              .....+.++...|
T Consensus       179 ~~~~~D~~slG~~l~~l~~g~~pf~~~~----~~-~~~~~~~~~~~~~~~-~~--------------~~~~~~~~li~~~  238 (258)
T cd06632         179 YGLAADIWSLGCTVLEMATGKPPWSQLE----GV-AAVFKIGRSKELPPI-PD--------------HLSDEAKDFILKC  238 (258)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCcccCc----HH-HHHHHHHhcccCCCc-CC--------------CcCHHHHHHHHHH
Confidence            6778999999999999999999964322    11 11111111 000000 00              1112355677889


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.+++.
T Consensus       239 l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         239 LQRDPSLRPTAAELLE  254 (258)
T ss_pred             hhcCcccCcCHHHHhc
Confidence            9999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=96.94  E-value=0.001  Score=62.25  Aligned_cols=78  Identities=19%  Similarity=0.203  Sum_probs=47.6

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|||+||+++.|+++|+.|.....    +-...........     .+.+-..        ......+.++...|.
T Consensus       183 ~~~~~Dv~s~G~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~li~~~l  245 (264)
T cd06626         183 HGRAADIWSLGCVVLEMATGKRPWSELD----NEFQIMFHVGAGH-----KPPIPDS--------LQLSPEGKDFLDRCL  245 (264)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCccCCc----chHHHHHHHhcCC-----CCCCCcc--------cccCHHHHHHHHHHc
Confidence            5678999999999999999999964321    1111111101110     0111000        011223557788999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.|++.
T Consensus       246 ~~~p~~R~~~~~i~~  260 (264)
T cd06626         246 ESDPKKRPTASELLQ  260 (264)
T ss_pred             cCCcccCCCHHHHhc
Confidence            999999999999853

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=96.94  E-value=0.00025  Score=67.29  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=50.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC---CC----cceeeec----ccccc--cccc--ccch
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS---IS----VMEVVDA----NLLSW--KDKH--FMTK  450 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~---~~----~~~v~d~----~l~~~--~~~~--~~~~  450 (495)
                      .+.++|||+||+++.|++||+.|.+..-     -...+.....   ..    ...+.+.    .....  ....  ....
T Consensus       179 ~~~~~Dv~slG~~l~el~t~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (287)
T cd07840         179 YGPEVDMWSVGCILAELFLGKPIFQGST-----ELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFK  253 (287)
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCCCCC-----hHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhc
Confidence            4678999999999999999998864211     1111221110   00    0000000    00000  0000  0000


Q ss_pred             hhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          451 EQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       451 ~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+...+.++...|...+|.+||++.++++
T Consensus       254 ~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         254 HLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             ccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            012456889999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=96.93  E-value=0.00046  Score=64.78  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=48.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|+++|+.|........ ....+.+.       ....+....        .......+.++...|
T Consensus       185 ~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~-~~~~~~~~-------~~~~~~~~~--------~~~~~~~~~~li~~~  248 (267)
T cd06646         185 GYNQLCDIWAVGITAIELAELQPPMFDLHPMR-ALFLMSKS-------NFQPPKLKD--------KTKWSSTFHNFVKIS  248 (267)
T ss_pred             CCcchhhHHHHHHHHHHHHhCCCCccccchhh-hheeeecC-------CCCCCCCcc--------ccccCHHHHHHHHHH
Confidence            35668999999999999999999864321100 00000000       000011100        001123466788899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.++++
T Consensus       249 l~~~P~~Rp~~~~il~  264 (267)
T cd06646         249 LTKNPKKRPTAERLLT  264 (267)
T ss_pred             hhCChhhCcCHHHHhc
Confidence            9999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=96.92  E-value=0.00051  Score=65.01  Aligned_cols=84  Identities=14%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||+||++.|+++|+.|.... ....+-..+.+........ ....              .....+.++.
T Consensus       167 ~~~~~~~~~DvwslGv~l~el~~g~~p~~~~-~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~li  230 (277)
T cd05607         167 KEEPYSYPVDWFAMGCSIYEMVAGRTPFKDH-KEKVAKEELKRRTLEDEVK-FEHQ--------------NFTEESKDIC  230 (277)
T ss_pred             ccCCCCCchhHHHHHHHHHHHHhCCCCCCCC-cchhhHHHHHHHhhccccc-cccc--------------cCCHHHHHHH
Confidence            3445678899999999999999999996431 1112222222222221110 0000              0122367888


Q ss_pred             hhcCCCCccCchhHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQD  481 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~  481 (495)
                      ..|...+|.+||++.|+++.
T Consensus       231 ~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         231 RLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             HHHhccCHhhCCCCccchhh
Confidence            99999999999999877543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=96.91  E-value=0.00096  Score=62.31  Aligned_cols=77  Identities=12%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+|+||+++.|+++|+.|.+.     .................     +          ...+...+.++...
T Consensus       180 ~~~~~~~Dv~slG~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~li~~  239 (260)
T cd08222         180 QGYDSKSDIWSLGCILYEMCCLAHAFEG-----QNFLSVVLRIVEGPTPS-----L----------PETYSRQLNSIMQS  239 (260)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCC-----ccHHHHHHHHHcCCCCC-----C----------cchhcHHHHHHHHH
Confidence            3456689999999999999999988532     22333333322211100     0          00122346778889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |+..+|.+||++.|+++
T Consensus       240 ~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         240 MLNKDPSLRPSAAEILR  256 (260)
T ss_pred             HhcCChhhCcCHHHHhh
Confidence            99999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=96.91  E-value=0.00076  Score=63.94  Aligned_cols=98  Identities=11%  Similarity=0.045  Sum_probs=51.5

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC-CCc---cee-eecccccccccc--ccchhhHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS-ISV---MEV-VDANLLSWKDKH--FMTKEQCM  454 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~-~~~---~~v-~d~~l~~~~~~~--~~~~~~~~  454 (495)
                      .....+.++|+|+||+++.|++||+.|.+.. .....+.++.+.... ...   ... ............  .....+-.
T Consensus       179 ~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (287)
T cd07838         179 LQSSYATPVDMWSVGCIFAELFRRRPLFRGT-SEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEIC  257 (287)
T ss_pred             ccCCCCCcchhhhHHHHHHHHHhCCCcccCC-ChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhh
Confidence            3445677899999999999999997775421 111122222221110 000   000 000000000000  00000112


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|.+.+|.+||++.+++.
T Consensus       258 ~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         258 EEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             HHHHHHHHHHhccCCccCCCHHHHhc
Confidence            34567889999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.90  E-value=0.00061  Score=74.61  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             hhcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      +|.......+.++|||||||+++||++|..|....   ...+..+....        .++...           ......
T Consensus       184 PE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~---~~~~~~~~~~~--------~~~~~~-----------~~~~~~  241 (793)
T PLN00181        184 PEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEK---SRTMSSLRHRV--------LPPQIL-----------LNWPKE  241 (793)
T ss_pred             hhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhH---HHHHHHHHHhh--------cChhhh-----------hcCHHH
Confidence            34444556778999999999999999987764321   00111111111        111110           011223


Q ss_pred             HHHHhhcCCCCccCchhHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+...|...+|.+||+|.|+++
T Consensus       242 ~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        242 ASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             HHHHHHhCCCChhhCcChHHHhh
Confidence            46677899999999999999964

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=96.90  E-value=0.001  Score=62.91  Aligned_cols=93  Identities=16%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccC-----------CCCCHHHHHHHHhCCC-cceeeeccccccccccccchhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFN-----------GEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~-----------~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~  452 (495)
                      ..+.++|+||||+++.|++||+.|....-.           +...-..|........ ....+..........   ..+.
T Consensus       175 ~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  251 (283)
T cd07830         175 SYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQ---LIPN  251 (283)
T ss_pred             CcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHH---Hccc
Confidence            356789999999999999999877532100           0001111221111000 000000000000000   0001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+..+...|...+|.+||++.|++.
T Consensus       252 ~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         252 ASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             CCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            1345889999999999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=96.86  E-value=0.00075  Score=63.95  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=46.5

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCC
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE  467 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~  467 (495)
                      .++|+||+||.++||+||+.|+...+    ....|+-......    .-|.+-+.       .   ....-+.-..|...
T Consensus       201 ~~sDiWSlGCtVvEM~Tg~~PW~~~~----~~~~~~~~ig~~~----~~P~ip~~-------l---s~~a~~Fl~~C~~~  262 (313)
T KOG0198|consen  201 RESDIWSLGCTVVEMLTGKPPWSEFF----EEAEALLLIGRED----SLPEIPDS-------L---SDEAKDFLRKCFKR  262 (313)
T ss_pred             ccchhhhcCCEEEeccCCCCcchhhc----chHHHHHHHhccC----CCCCCCcc-------c---CHHHHHHHHHHhhc
Confidence            47999999999999999999987641    1112221111111    01111111       0   11134557889999


Q ss_pred             CccCchhHHHHHH
Q 011044          468 SPIRESTQRKLLQ  480 (495)
Q Consensus       468 ~p~~Rp~m~~v~~  480 (495)
                      +|..||++.+.+.
T Consensus       263 ~p~~Rpta~eLL~  275 (313)
T KOG0198|consen  263 DPEKRPTAEELLE  275 (313)
T ss_pred             CcccCcCHHHHhh
Confidence            9999999999854

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=96.85  E-value=0.00097  Score=62.56  Aligned_cols=81  Identities=20%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++|+||+||++.|+++|+.|....... ..+....    ....   ..+... ..       ......+.++...
T Consensus       184 ~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~-~~~~~~~----~~~~---~~~~~~-~~-------~~~~~~~~~li~~  247 (267)
T cd06645         184 GGYNQLCDIWAVGITAIELAELQPPMFDLHPM-RALFLMT----KSNF---QPPKLK-DK-------MKWSNSFHHFVKM  247 (267)
T ss_pred             CCCCchhhhHHHHHHHHHHhcCCCCcccccch-hhHHhhh----ccCC---CCCccc-cc-------CCCCHHHHHHHHH
Confidence            34567899999999999999999885322110 0010110    0000   000000 00       0011235678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.++++
T Consensus       248 ~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         248 ALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             HccCCchhCcCHHHHhc
Confidence            99999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=96.85  E-value=0.00077  Score=63.41  Aligned_cols=80  Identities=13%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|......+......|.... .... ...+               ..-..+.++..
T Consensus       180 ~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~---------------~~~~~~~~li~  242 (267)
T PHA03390        180 GHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QKKL-PFIK---------------NVSKNANDFVQ  242 (267)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-cccC-Cccc---------------ccCHHHHHHHH
Confidence            34456789999999999999999999875544445555555443 1110 0000               01122556677


Q ss_pred             hcCCCCccCchh-HHHHH
Q 011044          463 ECTVESPIREST-QRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~-m~~v~  479 (495)
                      .|.+.+|.+||+ +.+++
T Consensus       243 ~~l~~~p~~R~~~~~~~l  260 (267)
T PHA03390        243 SMLKYNINYRLTNYNEII  260 (267)
T ss_pred             HHhccChhhCCchHHHHh
Confidence            999999999995 67775

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=96.84  E-value=0.00082  Score=66.14  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ...+.++|+|||||++.||++|+.|..
T Consensus       193 ~~~~~~~DiwslG~il~el~~g~~pf~  219 (355)
T cd07874         193 MGYKENVDIWSVGCIMGEMVRHKILFP  219 (355)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            345678999999999999999999853

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=96.83  E-value=0.001  Score=62.35  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|+|++|+++.|++||+.|....    ... +-+..... .    ..+.+.          ......+..+..
T Consensus       186 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~----~~~-~~~~~~~~-~----~~~~~~----------~~~~~~~~~li~  245 (267)
T cd06628         186 QTSYTRKADIWSLGCLVVEMLTGKHPFPDC----TQL-QAIFKIGE-N----ASPEIP----------SNISSEAIDFLE  245 (267)
T ss_pred             cCCCCchhhhHHHHHHHHHHhhCCCCCCCc----cHH-HHHHHHhc-c----CCCcCC----------cccCHHHHHHHH
Confidence            345567899999999999999999996531    111 11111000 0    011110          011234667778


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       246 ~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         246 KTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             HHccCCchhCcCHHHHhh
Confidence            999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=96.82  E-value=0.00056  Score=65.28  Aligned_cols=90  Identities=17%  Similarity=0.070  Sum_probs=48.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH--HhCCCcceee-------ec-----cccccccccccch
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND--LLSISVMEVV-------DA-----NLLSWKDKHFMTK  450 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~--~~~~~~~~v~-------d~-----~l~~~~~~~~~~~  450 (495)
                      ..+.++||||+|+++.|++||+.|....    .....+.+.  ..........       |.     ........  ...
T Consensus       180 ~~~~~~Dv~slG~i~~~l~tg~~pf~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  253 (294)
T PLN00009        180 HYSTPVDIWSVGCIFAEMVNQKPLFPGD----SEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLA--TVV  253 (294)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHH--HhC
Confidence            3567899999999999999998885321    111111110  0010000000       00     00000000  000


Q ss_pred             hhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          451 EQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       451 ~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ......+.++...|.+.+|.+||++.++++
T Consensus       254 ~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        254 PTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             cCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence            011223677889999999999999999974

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=96.81  E-value=0.00038  Score=65.97  Aligned_cols=94  Identities=16%  Similarity=0.011  Sum_probs=48.7

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh-CCCc-c-e-eeeccccccccccc-----cchhhHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL-SISV-M-E-VVDANLLSWKDKHF-----MTKEQCMSF  456 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~-~~~~-~-~-v~d~~l~~~~~~~~-----~~~~~~~~~  456 (495)
                      .+.++|+||||+++.|++||+.|....-. ...+.+.++... +... . . ...+..........     .........
T Consensus       177 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (283)
T cd07835         177 YSTPVDIWSIGCIFAEMVNRRPLFPGDSE-IDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDED  255 (283)
T ss_pred             cCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHH
Confidence            46689999999999999999988532100 001111111100 0000 0 0 00000000000000     000111234


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +.++...|.+.+|.+||++.|+++
T Consensus       256 ~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         256 GLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             HHHHHHHHhcCChhhCcCHHHHhc
Confidence            778999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.81  E-value=0.00086  Score=66.37  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHH-HHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR-RWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~-~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ..+++.++||||+||+|.+|+-||.|.-.       +. .|.+-      ..|.||+.--.+....     .-..++.++
T Consensus       546 k~Ki~r~SDvWSLGCILYqMvYgktPf~~-------~~n~~aKl------~aI~~P~~~Iefp~~~-----~~~~li~~m  607 (677)
T KOG0596|consen  546 KIKISRKSDVWSLGCILYQMVYGKTPFGQ-------IINQIAKL------HAITDPNHEIEFPDIP-----ENDELIDVM  607 (677)
T ss_pred             ceeecCccchhhhhhHHHHHHhcCCchHH-------HHHHHHHH------HhhcCCCccccccCCC-----CchHHHHHH
Confidence            45689999999999999999999999432       22 34432      2344443211111111     111278899


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      -.|.+-+|.+||+..++++
T Consensus       608 K~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  608 KCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             HHHHhcCcccCCCcHHHhc
Confidence            9999999999999999853

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=96.79  E-value=0.0012  Score=62.61  Aligned_cols=77  Identities=17%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+|+||+++.|+++|+.|.+....   .... +.......     .+.+..         ......+..+...|.
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~-~~~~~~~~-----~~~~~~---------~~~~~~l~~li~~~l  245 (283)
T cd06617         184 YDVKSDVWSLGITMIELATGRFPYDSWKT---PFQQ-LKQVVEEP-----SPQLPA---------EKFSPEFQDFVNKCL  245 (283)
T ss_pred             cCccccchhhHHHHHHHHhCCCCCCcccc---CHHH-HHHHHhcC-----CCCCCc---------cccCHHHHHHHHHHc
Confidence            46689999999999999999999643111   1111 11111110     011100         011123667888899


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.++++
T Consensus       246 ~~~p~~Rp~~~~il~  260 (283)
T cd06617         246 KKNYKERPNYPELLQ  260 (283)
T ss_pred             cCChhhCcCHHHHhc
Confidence            999999999999964

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=96.79  E-value=0.00098  Score=63.13  Aligned_cols=78  Identities=15%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|....-    +...-..  ....    ..+.+.         ...+...+.++...
T Consensus       201 ~~~~~~~DvwslG~~l~el~~g~~p~~~~~----~~~~~~~--~~~~----~~~~~~---------~~~~~~~~~~li~~  261 (282)
T cd06636         201 ATYDYRSDIWSLGITAIEMAEGAPPLCDMH----PMRALFL--IPRN----PPPKLK---------SKKWSKKFIDFIEG  261 (282)
T ss_pred             cCCCcccchhHHHHHHHHHHhCCCCccccC----HHhhhhh--HhhC----CCCCCc---------ccccCHHHHHHHHH
Confidence            345678999999999999999999964321    1111000  0000    000010         00123347788889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||+..|+++
T Consensus       262 cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         262 CLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             HhCCChhhCcCHHHHhc
Confidence            99999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=96.79  E-value=0.0018  Score=62.47  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||||+++.|+++|+.|..
T Consensus       187 ~~~~~Diws~G~il~el~~g~~pf~  211 (314)
T cd08216         187 YNEKSDIYSVGITACELANGHVPFK  211 (314)
T ss_pred             CCcchhHHHHHHHHHHHHhCCCCCC
Confidence            4568999999999999999999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=96.79  E-value=0.00064  Score=66.35  Aligned_cols=94  Identities=12%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC------------cceeeeccccccccccccchhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS------------VMEVVDANLLSWKDKHFMTKEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~------------~~~v~d~~l~~~~~~~~~~~~~  452 (495)
                      ..+.++|+||||+++.|++||+.|....-.  ......+.......            ...+.+................
T Consensus       189 ~~~~~sDi~slG~~l~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (337)
T cd07852         189 RYTKGVDMWSVGCILGEMLLGKPLFPGTST--LNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPK  266 (337)
T ss_pred             cccccchHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccC
Confidence            356789999999999999999988532110  00000010000000            0001110000000000000011


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+||++.++++
T Consensus       267 ~~~~l~~li~~~l~~~P~~Rps~~~il~  294 (337)
T cd07852         267 ASDDALDLLKKLLVFNPNKRLTAEEALE  294 (337)
T ss_pred             CCHHHHHHHHHhccCCcccccCHHHHhh
Confidence            2345788999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=96.78  E-value=0.00093  Score=68.60  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|++||+.|...     .+....+.........    + . .         ......+.++..
T Consensus       245 ~~~~~~~~Dv~slG~~l~el~tg~~Pf~~-----~~~~~~~~~~~~~~~~----~-~-~---------~~~s~~~~~li~  304 (478)
T PTZ00267        245 RKRYSKKADMWSLGVILYELLTLHRPFKG-----PSQREIMQQVLYGKYD----P-F-P---------CPVSSGMKALLD  304 (478)
T ss_pred             CCCCCcHHhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCCC----C-C-C---------ccCCHHHHHHHH
Confidence            44567789999999999999999999642     2222333332221110    0 0 0         011123667888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.+++.
T Consensus       305 ~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        305 PLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             HHhccChhhCcCHHHHHh
Confidence            999999999999999864

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=96.78  E-value=0.00096  Score=62.53  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             ccccCCCcceeehhhhhhcc-cCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETF-TAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~-tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++ +|+.|....     ......  .+.........               .....+..+..
T Consensus       184 ~~~~~~~DiwslG~~l~el~~~~~~p~~~~-----~~~~~~--~~~~~~~~~~~---------------~~~~~~~~li~  241 (262)
T cd05077         184 KNLSIAADKWSFGTTLWEICYNGEIPLKDK-----TLAEKE--RFYEGQCMLVT---------------PSCKELADLMT  241 (262)
T ss_pred             CCCCchhHHHHHHHHHHHHHhCCCCCCCCc-----chhHHH--HHHhcCccCCC---------------CChHHHHHHHH
Confidence            34567899999999999997 576664321     111110  01111000000               11223667889


Q ss_pred             hcCCCCccCchhHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .|...+|.+||++.++++.+
T Consensus       242 ~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         242 HCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             HHcCCChhhCcCHHHHHHhc
Confidence            99999999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=96.77  E-value=0.00097  Score=64.06  Aligned_cols=83  Identities=13%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|++||+.|...     ....++..........   .+..          .......+.++..
T Consensus       190 ~~~~~~~~Di~slG~vl~el~~g~~pf~~-----~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~~li~  251 (305)
T cd05609         190 RQGYGKPVDWWAMGIILYEFLVGCVPFFG-----DTPEELFGQVISDDIE---WPEG----------DEALPADAQDLIS  251 (305)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhcccC---CCCc----------cccCCHHHHHHHH
Confidence            34567789999999999999999998532     1223333332222110   1100          0011233678999


Q ss_pred             hcCCCCccCchhHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      .|.+.+|.+||++.++.+.++
T Consensus       252 ~~l~~~P~~R~~~~~~~~ll~  272 (305)
T cd05609         252 RLLRQNPLERLGTGGAFEVKQ  272 (305)
T ss_pred             HHhccChhhccCccCHHHHHh
Confidence            999999999999766655554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=96.76  E-value=0.0014  Score=60.95  Aligned_cols=78  Identities=21%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|++|+++.|+++|+.|.+.     .+..+............     +.          ......+.++..
T Consensus       177 ~~~~~~~~Dv~slG~~~~~l~~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~~----------~~~~~~~~~~i~  236 (258)
T cd08215         177 NKPYNYKSDIWSLGCVLYELCTLKHPFEG-----ENLLELALKILKGQYPP-----IP----------SQYSSELRNLVS  236 (258)
T ss_pred             cCCCCccccHHHHHHHHHHHHcCCCCCCC-----CcHHHHHHHHhcCCCCC-----CC----------CCCCHHHHHHHH
Confidence            34466789999999999999999998643     12233333322211110     00          012234678889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       237 ~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         237 SLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             HHcCCChhhCcCHHHHhc
Confidence            999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=96.76  E-value=0.00064  Score=66.30  Aligned_cols=94  Identities=12%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc----ceeeecccccc----ccccccc----hhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV----MEVVDANLLSW----KDKHFMT----KEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~----~~v~d~~l~~~----~~~~~~~----~~~  452 (495)
                      ..+.++|+|+||+++.|+++|+.|.+..-  .......+........    ..+.+..+...    .......    ...
T Consensus       188 ~~~~~~Di~slG~~l~el~~g~~pf~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (334)
T cd07855         188 EYTTAIDMWSVGCIFAEMLGRRQLFPGKN--YVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPK  265 (334)
T ss_pred             ccccccchHHHHHHHHHHHcCCCccCCCC--hHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHccc
Confidence            45778999999999999999999864321  1111122222111110    01111111000    0000000    011


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+||++.+++.
T Consensus       266 ~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         266 ASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            2345788999999999999999999865

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=96.75  E-value=0.0005  Score=65.21  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      .+.++|||+||+++.|++||+.|.
T Consensus       178 ~~~~~Dv~slG~il~~l~tg~~p~  201 (284)
T cd07860         178 YSTAVDIWSLGCIFAEMVTRRALF  201 (284)
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCC
Confidence            366799999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=96.75  E-value=0.00059  Score=65.57  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.8

Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...++...|...+|.+||++.++++
T Consensus       282 ~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         282 HALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             HHHHHHHHHhcCChhhccCHHHHhc
Confidence            3567999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=96.73  E-value=0.0011  Score=63.43  Aligned_cols=80  Identities=19%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|+||||+++.|+++|+.|.+..-    ... .+........     +...        ........+..+..
T Consensus       189 ~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~----~~~-~~~~~~~~~~-----~~~~--------~~~~~~~~l~~li~  250 (293)
T cd06647         189 RKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN----PLR-ALYLIATNGT-----PELQ--------NPEKLSAIFRDFLN  250 (293)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----hhh-heeehhcCCC-----CCCC--------CccccCHHHHHHHH
Confidence            3445778999999999999999999964321    100 0000000000     0000        00011223556788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|.+.+|.+||++.+++.
T Consensus       251 ~~l~~~p~~Rp~~~~il~  268 (293)
T cd06647         251 RCLEMDVEKRGSAKELLQ  268 (293)
T ss_pred             HHccCChhhCcCHHHHhc
Confidence            999999999999999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=96.73  E-value=0.00097  Score=65.12  Aligned_cols=94  Identities=13%  Similarity=0.115  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC----Ccceeeecccccc------ccc--cccchhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI----SVMEVVDANLLSW------KDK--HFMTKEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~----~~~~v~d~~l~~~------~~~--~~~~~~~  452 (495)
                      ..+.++|+|+||+++.|+++|+.|....-  ..............    ....+.+......      ...  .......
T Consensus       185 ~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (337)
T cd07858         185 EYTTAIDVWSVGCIFAELLGRKPLFPGKD--YVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPH  262 (337)
T ss_pred             CCCCcccHHHHHHHHHHHHcCCCCCCCCC--hHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHccc
Confidence            36678999999999999999998864210  00000000010000    0001111110000      000  0000012


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+||++.++++
T Consensus       263 ~~~~~~~li~~~l~~~P~~Rps~~ell~  290 (337)
T cd07858         263 ANPLAIDLLEKMLVFDPSKRITVEEALA  290 (337)
T ss_pred             CCHHHHHHHHHHhcCChhhccCHHHHHc
Confidence            2344778999999999999999999964

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=96.70  E-value=0.00061  Score=65.21  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|+||+++.|++||+.|....-    ....... ..........++             ......+.++..
T Consensus       189 ~~~~~~~~Di~slGvil~~l~tg~~pf~~~~----~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~li~  250 (297)
T cd06656         189 RKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN----PLRALYL-IATNGTPELQNP-------------ERLSAVFRDFLN  250 (297)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----cchheee-eccCCCCCCCCc-------------cccCHHHHHHHH
Confidence            3456678999999999999999999864211    1000000 000000000000             011122556788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       251 ~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         251 RCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             HHccCChhhCcCHHHHhc
Confidence            999999999999999965

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=96.70  E-value=0.00055  Score=64.94  Aligned_cols=25  Identities=32%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||||+++.|++||+.|..
T Consensus       179 ~~~~~Dv~slG~il~~l~tg~~~~~  203 (285)
T cd07861         179 YSTPVDIWSIGTIFAEMATKKPLFH  203 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            4668999999999999999988753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=96.70  E-value=0.0014  Score=62.34  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|||||||++.|+++|+.|....... ..... +........... ..              .....+..+.
T Consensus       174 ~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~-~~~~~-~~~~~~~~~~~~-~~--------------~~s~~~~~li  236 (285)
T cd05631         174 NNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKER-VKREE-VDRRVKEDQEEY-SE--------------KFSEDAKSIC  236 (285)
T ss_pred             cCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcc-hhHHH-HHHHhhcccccC-Cc--------------cCCHHHHHHH
Confidence            3445677899999999999999999996532111 01111 111111110000 00              0112366788


Q ss_pred             hhcCCCCccCchh-----HHHHHH
Q 011044          462 MECTVESPIREST-----QRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~-----m~~v~~  480 (495)
                      ..|...+|.+||+     +.++.+
T Consensus       237 ~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         237 RMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             HHHhhcCHHHhcCCCCCCHHHHhc
Confidence            9999999999997     677653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=96.68  E-value=0.00091  Score=63.41  Aligned_cols=91  Identities=16%  Similarity=0.113  Sum_probs=49.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCC-------cceeeecccccccccccc---chhh
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SIS-------VMEVVDANLLSWKDKHFM---TKEQ  452 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~-------~~~v~d~~l~~~~~~~~~---~~~~  452 (495)
                      .+.++|||||||++.||+||+.|.....    +.....+...   ...       ...+.+............   ....
T Consensus       177 ~~~~~DiwslG~il~~l~tg~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd07839         177 YSTSIDMWSAGCIFAELANAGRPLFPGN----DVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPK  252 (284)
T ss_pred             cCcHHHHHHHHHHHHHHHhcCCCCcCCC----CHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhccc
Confidence            4678999999999999999999853211    1122222111   000       001111100000000000   0001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+||++.+++.
T Consensus       253 ~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         253 LNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             CCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            1234667899999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=96.66  E-value=0.0012  Score=64.29  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=24.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.|+++|+.|.+
T Consensus       176 ~~~~~~~~DvwslG~il~~l~~g~~p~~  203 (333)
T cd06650         176 GTHYSVQSDIWSMGLSLVEMAIGRYPIP  203 (333)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            3456678999999999999999999965

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=96.65  E-value=0.0019  Score=64.66  Aligned_cols=88  Identities=18%  Similarity=0.229  Sum_probs=59.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCC--CHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEM--TLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~--~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      .+.++|+|||||++-|+++.+.|++.......  .+..++++    .......|.+....        +....+..+...
T Consensus       135 ~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~----~~~~~~rP~i~~~~--------e~~~~l~~l~~~  202 (484)
T KOG1023|consen  135 LTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKK----GGSNPFRPSIELLN--------ELPPELLLLVAR  202 (484)
T ss_pred             ccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHh----cCCCCcCcchhhhh--------hcchHHHHHHHH
Confidence            57789999999999999999999876433222  24444444    11222233332110        222258889999


Q ss_pred             cCCCCccCchhHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      |..+.|..||++.+|-..++.+
T Consensus       203 cw~e~P~~rPs~~~i~~~~~~~  224 (484)
T KOG1023|consen  203 CWEEIPEKRPSIEQIRSKLLTI  224 (484)
T ss_pred             hcccChhhCccHHHHHhhhhhh
Confidence            9999999999999996666544

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=96.65  E-value=0.00042  Score=64.63  Aligned_cols=84  Identities=17%  Similarity=0.265  Sum_probs=53.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+|+++.||++|+.|+....  ..+-...+........    ....        .........+.++..
T Consensus       173 ~~~~~~~~Di~slG~il~~l~~~~~p~~~~~--~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~~~l~~li~  238 (260)
T PF00069_consen  173 GKKYTRKSDIWSLGIILYELLTGKLPFEESN--SDDQLEIIEKILKRPL----PSSS--------QQSREKSEELRDLIK  238 (260)
T ss_dssp             TSSBSTHHHHHHHHHHHHHHHHSSSSSTTSS--HHHHHHHHHHHHHTHH----HHHT--------TSHTTSHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccc--chhhhhhhhhcccccc----cccc--------cccchhHHHHHHHHH
Confidence            5667889999999999999999999976531  0111111111111000    0000        001111356888999


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       239 ~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  239 KMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             HHSSSSGGGSTTHHHHHT
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999874

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=96.63  E-value=0.00054  Score=67.09  Aligned_cols=90  Identities=16%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---C------------CCcceeeec-ccccccccccc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---S------------ISVMEVVDA-NLLSWKDKHFM  448 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~------------~~~~~v~d~-~l~~~~~~~~~  448 (495)
                      ..+.++||||+|+++.|++||+.|...    . +-...++...   +            ......+.. .......... 
T Consensus       192 ~~~~~~DvwslGv~l~elltg~~pf~~----~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  265 (343)
T cd07851         192 HYNQTVDIWSVGCIMAELLTGKTLFPG----S-DHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKE-  265 (343)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCCCCC----C-ChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHH-
Confidence            356789999999999999999988532    1 1111222111   0            000000000 0000000000 


Q ss_pred             chhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          449 TKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       449 ~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ........+.++...|...+|.+||++.++++
T Consensus       266 ~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         266 VFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            00011234778999999999999999999853

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=96.61  E-value=0.0021  Score=60.94  Aligned_cols=76  Identities=17%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH---HhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND---LLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~---~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ..+.++|+|+|||++.|++||+.|....     ....+...   ......     +.+          .......+..+.
T Consensus       183 ~~~~~~DiwslG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~~~li  242 (286)
T cd06622         183 TYTVQSDVWSLGLSILEMALGRYPYPPE-----TYANIFAQLSAIVDGDP-----PTL----------PSGYSDDAQDFV  242 (286)
T ss_pred             CCCcccchHhHHHHHHHHHhCCCCCCCc-----chhhHHHHHHHHhhcCC-----CCC----------CcccCHHHHHHH
Confidence            3467899999999999999999996431     11111111   111110     001          001223366778


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.+++.
T Consensus       243 ~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         243 AKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             HHHcccCcccCCCHHHHhc
Confidence            8999999999999999965

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=96.61  E-value=0.00084  Score=65.72  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|||||||++.|+++|+.|..
T Consensus       191 ~~~~~~Dv~slGvil~el~~g~~pf~  216 (342)
T cd07879         191 HYNQTVDIWSVGCIMAEMLTGKTLFK  216 (342)
T ss_pred             ccCchHHHHHHHHHHHHHHhCCCCCC
Confidence            35678999999999999999999864

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=96.61  E-value=0.00095  Score=64.90  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +...+.++...|...+|.+||++.|+++
T Consensus       280 ~~~~~~~li~~~l~~dP~~Rpta~e~l~  307 (328)
T cd08226         280 FSPAFQNLVELCLQQDPEKRPSASSLLS  307 (328)
T ss_pred             hhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            4456889999999999999999999963

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=96.60  E-value=0.002  Score=62.72  Aligned_cols=78  Identities=9%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCC---CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG---EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~---~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      .....+.++||||||+++.|++||+.|.+.....   ......|+..........+ ..              .....+.
T Consensus       169 ~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~-p~--------------~~~~~~~  233 (329)
T cd05618         169 RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI-PR--------------SLSVKAA  233 (329)
T ss_pred             cCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCC-CC--------------CCCHHHH
Confidence            3445567899999999999999999997532111   1222334433322111110 00              1122356


Q ss_pred             HHHhhcCCCCccCchh
Q 011044          459 NLAMECTVESPIREST  474 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~  474 (495)
                      .+...|...+|.+||+
T Consensus       234 ~ll~~~L~~dP~~R~~  249 (329)
T cd05618         234 SVLKSFLNKDPKERLG  249 (329)
T ss_pred             HHHHHHhcCCHHHcCC
Confidence            7888999999999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=96.59  E-value=0.00046  Score=65.75  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||||+++.|++||+.|.+
T Consensus       181 ~~~~~Dv~slG~~l~~l~~g~~~f~  205 (291)
T cd07870         181 YSSALDIWGAGCIFIEMLQGQPAFP  205 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            4567999999999999999999865

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=96.58  E-value=0.0024  Score=59.90  Aligned_cols=81  Identities=19%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|||++|+++.|+++|+.|.....  ......+.........    .+.+          .+.....+.++...
T Consensus       183 ~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~i~~  246 (268)
T cd06630         183 EQYGRSCDVWSVGCVIIEMATAKPPWNAEK--HSNHLALIFKIASATT----APSI----------PEHLSPGLRDVTLR  246 (268)
T ss_pred             CCCCcccchHHHHHHHHHHHhCCCCCCCCC--CcchHHHHHHHhccCC----CCCC----------chhhCHHHHHHHHH
Confidence            345678999999999999999999864211  1111111111111000    0000          00112346778899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       247 ~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         247 CLELQPEDRPPSRELLK  263 (268)
T ss_pred             HcCCCcccCcCHHHHhc
Confidence            99999999999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=96.56  E-value=0.00077  Score=63.73  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-------ccee--eeccccccccccc-cchhhHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-------VMEV--VDANLLSWKDKHF-MTKEQCM  454 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-------~~~v--~d~~l~~~~~~~~-~~~~~~~  454 (495)
                      ..+.++|||+||+++.|+++|+.|....-  ......++.......       ..++  .+........... .....--
T Consensus       175 ~~~~~~Dv~slG~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (282)
T cd07829         175 HYSTAVDIWSVGCIFAEMITGKPLFPGDS--EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLD  252 (282)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhccccc
Confidence            56778999999999999999987753210  011111111111100       0000  0000000000000 0000112


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.+|+.
T Consensus       253 ~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         253 PEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             HHHHHHHHHhhccCcccCCCHHHHhh
Confidence            35888999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=96.56  E-value=0.0018  Score=60.45  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||+||+++.|++||+.|.+..     ....+..........      .   ..     .......+..+..
T Consensus       175 ~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~------~---~~-----~~~~~~~~~~~i~  235 (265)
T cd05579         175 GQGHSKTVDWWSLGCILYEFLVGIPPFHGE-----TPEEIFQNILNGKIE------W---PE-----DVEVSDEAIDLIS  235 (265)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhcCCcC------C---Cc-----cccCCHHHHHHHH
Confidence            344667899999999999999999996432     122222222111100      0   00     0001234678888


Q ss_pred             hcCCCCccCchhHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .|...+|.+||++.+|.+.|
T Consensus       236 ~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         236 KLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             HHhcCCHhhcCCCccHHHHh
Confidence            89999999999996665444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=96.55  E-value=0.0027  Score=61.89  Aligned_cols=85  Identities=11%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||++|+.|.+..     +..+......... ..+..+.....       .......+.++..
T Consensus       172 ~~~~~~~~DvwslG~il~ell~g~~pf~~~-----~~~~~~~~i~~~~-~~~~~~~~~~~-------~~~~s~~~~~li~  238 (333)
T cd05600         172 GKGYDFTVDYWSLGCMLYEFLCGFPPFSGS-----TPNETWENLKYWK-ETLQRPVYDDP-------RFNLSDEAWDLIT  238 (333)
T ss_pred             CCCCCCccceecchHHHhhhhhCCCCCCCC-----CHHHHHHHHHhcc-ccccCCCCCcc-------ccccCHHHHHHHH
Confidence            345677899999999999999999996431     1111111111110 00000100000       0011123556677


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|....|.+||++.++++
T Consensus       239 ~~l~~~~~rr~s~~~ll~  256 (333)
T cd05600         239 KLINDPSRRFGSLEDIKN  256 (333)
T ss_pred             HHhhChhhhcCCHHHHHh
Confidence            888899999999999964

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=96.55  E-value=0.0013  Score=63.39  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.|++.
T Consensus       287 ~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         287 SQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            45778899999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=96.55  E-value=0.0017  Score=61.45  Aligned_cols=92  Identities=12%  Similarity=0.067  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHH--HHHHhCCCc----ceeee------cccccccc-ccccchh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRW--VNDLLSISV----MEVVD------ANLLSWKD-KHFMTKE  451 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~w--v~~~~~~~~----~~v~d------~~l~~~~~-~~~~~~~  451 (495)
                      ..+.++|+|++|+++.|++||+.|...    ......+  +........    ..+.+      ..+..... ......+
T Consensus       175 ~~~~~~Di~slG~~l~~l~tg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T cd05118         175 GYSTPVDIWSVGCIFAELLSRRPLFPG----KSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFP  250 (283)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCC----CCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhh
Confidence            457789999999999999999877532    1111111  111111000    00000      00000000 0000011


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..-..+.++...|...+|.+||++.+++.
T Consensus       251 ~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         251 NASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            23345789999999999999999999874

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=96.53  E-value=0.002  Score=62.07  Aligned_cols=74  Identities=12%  Similarity=0.142  Sum_probs=47.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|++||+.|...     .+...+.+........      +..          .....+.++..
T Consensus       167 ~~~~~~~~DvwslGvil~el~tg~~pf~~-----~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~li~  225 (312)
T cd05585         167 GHGYTKAVDWWTLGVLLYEMLTGLPPFYD-----ENVNEMYRKILQEPLR------FPD----------GFDRDAKDLLI  225 (312)
T ss_pred             CCCCCCccceechhHHHHHHHhCCCCcCC-----CCHHHHHHHHHcCCCC------CCC----------cCCHHHHHHHH
Confidence            34456789999999999999999999542     2334444443332210      000          01122557788


Q ss_pred             hcCCCCccCchhHHH
Q 011044          463 ECTVESPIRESTQRK  477 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~  477 (495)
                      .|...+|.+||+...
T Consensus       226 ~~L~~dp~~R~~~~~  240 (312)
T cd05585         226 GLLSRDPTRRLGYNG  240 (312)
T ss_pred             HHcCCCHHHcCCCCC
Confidence            999999999986543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.52  E-value=0.0018  Score=69.23  Aligned_cols=85  Identities=15%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             hhcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      +|.........++|||||||++.|++||+.|.+.     .....++...+.....   .+..          .+.....+
T Consensus       549 PE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~-----~~~~~~~~~il~~~~~---~p~~----------~~~~~~~~  610 (669)
T cd05610         549 PELLLGKPHGPAVDWWALGVCLFEFLTGIPPFND-----ETPQQVFQNILNRDIP---WPEG----------EEKLSVNA  610 (669)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHhcCCC---CCcc----------cccCCHHH
Confidence            3444445567889999999999999999999542     2333444333221110   0000          00112235


Q ss_pred             HHHHhhcCCCCccCchhHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+...|...+|.+||++.|+++
T Consensus       611 ~~~l~~lL~~dP~~R~ta~e~l~  633 (669)
T cd05610         611 QNAIEILLTMDPTKRAGLKELKQ  633 (669)
T ss_pred             HHHHHHHcccChhHCcCHHHHHh
Confidence            56667789999999999999965

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=96.52  E-value=0.0018  Score=70.46  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.||+||+.|...    .-+...++..........     +           ......+..+...|
T Consensus       219 ~~s~KSDVWSLG~ILYELLTGk~PF~~----~~~~~qli~~lk~~p~lp-----i-----------~~~S~eL~dLI~~~  278 (1021)
T PTZ00266        219 SYDDKSDMWALGCIIYELCSGKTPFHK----ANNFSQLISELKRGPDLP-----I-----------KGKSKELNILIKNL  278 (1021)
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCCc----CCcHHHHHHHHhcCCCCC-----c-----------CCCCHHHHHHHHHH
Confidence            356789999999999999999999542    223334433322111000     0           00122366788899


Q ss_pred             CCCCccCchhHHHHH
Q 011044          465 TVESPIRESTQRKLL  479 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~  479 (495)
                      ...+|.+||++.|++
T Consensus       279 L~~dPeeRPSa~QlL  293 (1021)
T PTZ00266        279 LNLSAKERPSALQCL  293 (1021)
T ss_pred             hcCChhHCcCHHHHh
Confidence            999999999999986

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=96.48  E-value=0.0024  Score=62.99  Aligned_cols=28  Identities=18%  Similarity=0.150  Sum_probs=23.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++||||+|+++.||+||+.|..
T Consensus       196 ~~~~~~~~DiwSlG~il~el~tg~~pf~  223 (359)
T cd07876         196 GMGYKENVDIWSVGCIMGELVKGSVIFQ  223 (359)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence            3446678999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=96.47  E-value=0.0018  Score=62.25  Aligned_cols=91  Identities=14%  Similarity=0.087  Sum_probs=48.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC------C-------Ccceeeecccccccccc-ccch
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS------I-------SVMEVVDANLLSWKDKH-FMTK  450 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~------~-------~~~~v~d~~l~~~~~~~-~~~~  450 (495)
                      ..+.++||||||+++.|+++|+.|...    . +-....+....      .       ......+.......... ....
T Consensus       203 ~~~~~~Dv~slG~il~el~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (311)
T cd07866         203 RYTTAVDIWGIGCVFAEMFTRRPILQG----K-SDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERF  277 (311)
T ss_pred             ccCchhHhHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHc
Confidence            356789999999999999999988532    1 11111111110      0       00000000000000000 0000


Q ss_pred             hhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          451 EQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       451 ~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ......+.++...|...+|.+||++.|++.
T Consensus       278 ~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         278 GKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             ccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            011244778899999999999999999864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=96.46  E-value=0.0016  Score=61.71  Aligned_cols=93  Identities=13%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC---cceeeeccc------cccccccccchh----
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS---VMEVVDANL------LSWKDKHFMTKE----  451 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~---~~~v~d~~l------~~~~~~~~~~~~----  451 (495)
                      ..+.++|+||||+++.|++||+.|....-.  ..-...+.......   ..++.+..-      ....... ...+    
T Consensus       177 ~~~~~~Di~slG~i~~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  253 (286)
T cd07847         177 QYGPPVDVWAIGCVFAELLTGQPLWPGKSD--VDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETR-EPLESKFP  253 (286)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccc-cCHHHHhc
Confidence            356789999999999999999988643211  01111111111110   001111000      0000000 0000    


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .-...+.++...|...+|.+||++.|++.
T Consensus       254 ~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         254 NISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            01234678899999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.46  E-value=0.0015  Score=70.60  Aligned_cols=89  Identities=18%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++|||||||++.||+||+.|....-...+.    .+...       .++.-...       ..+....+.
T Consensus       201 E~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~----~~~~i-------~~P~~~~p-------~~~iP~~L~  262 (932)
T PRK13184        201 ERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKIS----YRDVI-------LSPIEVAP-------YREIPPFLS  262 (932)
T ss_pred             HHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhh----hhhhc-------cChhhccc-------cccCCHHHH
Confidence            4444455678899999999999999999996431111110    00000       01100000       001123366


Q ss_pred             HHHhhcCCCCccCch-hHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRES-TQRKLLQDSQKL  485 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp-~m~~v~~~l~~i  485 (495)
                      +++..|.+.+|.+|| ++.++.+.|+..
T Consensus       263 ~LI~rcL~~DP~kR~ss~eeLl~~Le~~  290 (932)
T PRK13184        263 QIAMKALAVDPAERYSSVQELKQDLEPH  290 (932)
T ss_pred             HHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            788999999999995 677777777654

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=96.44  E-value=0.0024  Score=59.24  Aligned_cols=77  Identities=21%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|||++|+++.|+++|+.|...    ........+... ...     +.+          .......+..+...
T Consensus       174 ~~~~~~~Dv~~lG~~l~~l~~g~~p~~~----~~~~~~~~~~~~-~~~-----~~~----------~~~~~~~~~~~i~~  233 (254)
T cd06627         174 SGASTASDIWSLGCTVIELLTGNPPYYD----LNPMAALFRIVQ-DDH-----PPL----------PEGISPELKDFLMQ  233 (254)
T ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHhc-cCC-----CCC----------CCCCCHHHHHHHHH
Confidence            3366789999999999999999988542    112222221111 100     000          00112336678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.+++.
T Consensus       234 ~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         234 CFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             HHhCChhhCcCHHHHhc
Confidence            99999999999999863

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=96.43  E-value=0.0029  Score=60.06  Aligned_cols=97  Identities=12%  Similarity=0.043  Sum_probs=50.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh-CCC---cce--eeeccccccccc-cccchhhHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL-SIS---VME--VVDANLLSWKDK-HFMTKEQCMS  455 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~-~~~---~~~--v~d~~l~~~~~~-~~~~~~~~~~  455 (495)
                      ....+.++|+||+||++.|+++|+.|....- ....+.+...... +..   ...  +....+...... ..........
T Consensus       181 ~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (288)
T cd07863         181 QSTYATPVDMWSVGCIFAEMFRRKPLFCGNS-EADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEE  259 (288)
T ss_pred             CCCCCCcchhhhHHHHHHHHHhCCcCcCCCC-HHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCH
Confidence            3456778999999999999999988743210 0011111111110 000   000  000000000000 0000011223


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...++...|.+.+|.+||++.|++.
T Consensus       260 ~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         260 SGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             HHHHHHHHHhccCcccCCCHHHHhc
Confidence            4668889999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=96.42  E-value=0.0015  Score=63.77  Aligned_cols=94  Identities=10%  Similarity=0.054  Sum_probs=51.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeecccccc---ccc-cccch----hh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANLLSW---KDK-HFMTK----EQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l~~~---~~~-~~~~~----~~  452 (495)
                      ..+.++||||+||++.|++||+.|.....  ......++...+...    ...+.+......   ... .....    ..
T Consensus       186 ~~~~~~DvwslGvil~el~~G~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (336)
T cd07849         186 GYTKAIDIWSVGCILAEMLSNRPLFPGKD--YLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPN  263 (336)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcc
Confidence            35678999999999999999998864211  011111111111111    111111111000   000 00000    01


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+..+...|...+|.+||++.++++
T Consensus       264 ~~~~~~~li~~~l~~dP~~Rpt~~e~l~  291 (336)
T cd07849         264 ADPKALDLLDKMLTFNPHKRITVEEALA  291 (336)
T ss_pred             cCcHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            1234778999999999999999999865

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PHA03207 serine/threonine kinase US3; Provisional

Probab=96.41  E-value=0.0023  Score=63.88  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=23.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.|+++|+.|..
T Consensus       261 ~~~~~~~~DvwslGvil~el~~g~~pf~  288 (392)
T PHA03207        261 LDPYCAKTDIWSAGLVLFEMSVKNVTLF  288 (392)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            3445678999999999999999999853

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=96.39  E-value=0.0016  Score=62.38  Aligned_cols=93  Identities=12%  Similarity=0.051  Sum_probs=49.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCccee----eec------cccccccc-cccchhhHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEV----VDA------NLLSWKDK-HFMTKEQCM  454 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v----~d~------~l~~~~~~-~~~~~~~~~  454 (495)
                      .+.++||||+|+++.||+||+.|....-  .......+...+.......    .+.      ........ .........
T Consensus       182 ~~~~~Dv~slG~~l~el~tg~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (301)
T cd07873         182 YSTQIDMWGVGCIFYEMSTGRPLFPGST--VEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLD  259 (301)
T ss_pred             CccHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCC
Confidence            4568999999999999999998854210  0011111111111111100    000      00000000 000000112


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.|+++
T Consensus       260 ~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         260 SDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            23567899999999999999999975

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PTZ00284 protein kinase; Provisional

Probab=96.37  E-value=0.0014  Score=67.09  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=24.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.||+||+.|.+
T Consensus       319 ~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        319 GLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            3446678999999999999999999965

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=96.36  E-value=0.00095  Score=64.92  Aligned_cols=95  Identities=13%  Similarity=0.050  Sum_probs=50.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCC----------CCCHHHHHHHHhCCCcceeeec-cccccccccccchhhH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNG----------EMTLRRWVNDLLSISVMEVVDA-NLLSWKDKHFMTKEQC  453 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~----------~~~l~~wv~~~~~~~~~~v~d~-~l~~~~~~~~~~~~~~  453 (495)
                      ..+.++|+|+||+++.|++||+.|.......          +....+|.+.........+... ......... ......
T Consensus       182 ~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  260 (328)
T cd07856         182 KYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFS-EKFKNA  260 (328)
T ss_pred             CcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHH-HHcCCC
Confidence            3567899999999999999999885421100          0011222222111111111000 000000000 000012


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|...+|.+||++.+++.
T Consensus       261 ~~~~~~li~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         261 DPSAIDLLEKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            245777888999999999999999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=96.36  E-value=0.0028  Score=59.19  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|||+||+++.|++||+.|....     +....+.........  ..+..          ...+...+.++...|.
T Consensus       170 ~~~~~Dv~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~i~~~l  232 (260)
T cd05611         170 DDKMSDWWSLGCVIFEFLFGYPPFHAE-----TPDAVFDNILSRRIN--WPEEV----------KEFCSPEAVDLINRLL  232 (260)
T ss_pred             CcchhhhHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhcccC--CCCcc----------cccCCHHHHHHHHHHc
Confidence            567899999999999999999996431     222222222111100  00000          0112344788999999


Q ss_pred             CCCccCchhHHHHHHH
Q 011044          466 VESPIRESTQRKLLQD  481 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~~  481 (495)
                      ..+|.+||+..++.+.
T Consensus       233 ~~~p~~R~~~~~~~~~  248 (260)
T cd05611         233 CMDPAKRLGANGYQEI  248 (260)
T ss_pred             cCCHHHccCCCcHHHH
Confidence            9999999987765443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=96.36  E-value=0.0026  Score=60.50  Aligned_cols=25  Identities=24%  Similarity=0.285  Sum_probs=22.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||+|+++.|+++|+.|..
T Consensus       181 ~~~~~Dv~slG~il~~l~~g~~~~~  205 (291)
T cd07844         181 YSTSLDMWGVGCIFYEMATGRPLFP  205 (291)
T ss_pred             cCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            4668999999999999999998864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=96.36  E-value=0.0016  Score=64.57  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||+||++.||++|+.|.+
T Consensus       182 ~~~~~DiwslG~il~el~~g~~pf~  206 (372)
T cd07853         182 YTSAVDIWSVGCIFAELLGRRILFQ  206 (372)
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCCCC
Confidence            4678999999999999999999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=96.36  E-value=0.0028  Score=61.19  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|+++|+.|.....    .-..+.+. .....      ...        ........+.++..
T Consensus       206 ~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~----~~~~~~~~-~~~~~------~~~--------~~~~~~~~~~~li~  266 (316)
T cd05574         206 GDGHGSAVDWWTLGILLYEMLYGTTPFKGSN----RDETFSNI-LKKEV------TFP--------GSPPVSSSARDLIR  266 (316)
T ss_pred             CCCCCchHHHHHHHHHHHHHhhCCCCCCCCc----hHHHHHHH-hcCCc------cCC--------CccccCHHHHHHHH
Confidence            4456778999999999999999999964321    11112111 11100      000        00001234788899


Q ss_pred             hcCCCCccCchhHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDS  482 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l  482 (495)
                      .|.+.+|.+||++...++++
T Consensus       267 ~~l~~~p~~R~s~~~~~~~l  286 (316)
T cd05574         267 KLLVKDPSKRLGSKRGAAEI  286 (316)
T ss_pred             HHccCCHhHCCCchhhHHHH
Confidence            99999999999955554444

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=96.35  E-value=0.0024  Score=60.99  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=48.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||||+++.|+++|+.|....  ........++...+.....+  .              .....+.++..
T Consensus       190 ~~~~~~~~Dv~slGvil~el~tg~~p~~~~--~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~l~~li~  251 (292)
T cd06657         190 RLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNLPPKLKNL--H--------------KVSPSLKGFLD  251 (292)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhhCCcccCCc--c--------------cCCHHHHHHHH
Confidence            344567899999999999999999985321  11111122222222111100  0              01122456677


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       252 ~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         252 RLLVRDPAQRATAAELLK  269 (292)
T ss_pred             HHHhCCcccCcCHHHHhc
Confidence            899999999999999965

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=96.33  E-value=0.0035  Score=60.92  Aligned_cols=27  Identities=19%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ...+.++|||||||++.|++||+.|..
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~Pf~  210 (330)
T cd05601         184 GTYGVECDWWSLGVIAYEMIYGRSPFH  210 (330)
T ss_pred             CCCCCcceeecccceeeeeccCCCCCC
Confidence            345678999999999999999999954

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=96.29  E-value=0.0034  Score=62.04  Aligned_cols=28  Identities=18%  Similarity=0.139  Sum_probs=23.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.||+||+.|..
T Consensus       199 ~~~~~~~~DiwSlG~il~ell~g~~pf~  226 (364)
T cd07875         199 GMGYKENVDIWSVGCIMGEMIKGGVLFP  226 (364)
T ss_pred             CCCCCchhhHHhHHHHHHHHHhCCCCCC
Confidence            3456778999999999999999998854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=96.29  E-value=0.0048  Score=60.51  Aligned_cols=29  Identities=17%  Similarity=0.298  Sum_probs=24.8

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .....+.++|||||||++.||++|+.|..
T Consensus       203 ~~~~~~~~~DiwSlG~il~ell~g~~Pf~  231 (350)
T cd05573         203 RGTPYGLECDWWSLGVILYEMLYGFPPFY  231 (350)
T ss_pred             cCCCCCCceeeEecchhhhhhccCCCCCC
Confidence            34456789999999999999999999964

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=96.28  E-value=0.0033  Score=59.51  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||||+++.|++||+.|....-. ........+.......      .+          .+.....+.++.
T Consensus       170 ~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~li  232 (280)
T cd05608         170 QGEEYDFSVDYFALGVTLYEMIAARGPFRARGE-KVENKELKQRILNDSV------TY----------PDKFSPASKSFC  232 (280)
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCc-chhHHHHHHhhcccCC------CC----------cccCCHHHHHHH
Confidence            344566789999999999999999999643111 1111111111111110      00          001123366778


Q ss_pred             hhcCCCCccCchhH
Q 011044          462 MECTVESPIRESTQ  475 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m  475 (495)
                      ..|...+|.+||+.
T Consensus       233 ~~~l~~~P~~R~~~  246 (280)
T cd05608         233 EALLAKDPEKRLGF  246 (280)
T ss_pred             HHHhcCCHHHhcCC
Confidence            89999999999944

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=96.28  E-value=0.0014  Score=62.21  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=49.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHH--HHHHHhCCC-------cceeeeccccccccccc----cchhh
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRR--WVNDLLSIS-------VMEVVDANLLSWKDKHF----MTKEQ  452 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~--wv~~~~~~~-------~~~v~d~~l~~~~~~~~----~~~~~  452 (495)
                      .+.++|||++|+++.|++||+.|..    +..+...  ++...+...       ..++.+..-........    .....
T Consensus       178 ~~~~~Di~slG~~l~~l~tg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (286)
T cd07832         178 YDPGVDLWAVGCIFAELLNGSPLFP----GENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPD  253 (286)
T ss_pred             CCchhHHHHHHHHHHHHHcCCcCcC----CCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCC
Confidence            4678999999999999999965532    2222222  222211110       00000000000000000    00012


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+||++.+++.
T Consensus       254 ~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         254 ASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             ccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            2356788999999999999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=96.25  E-value=0.0031  Score=60.11  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=49.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhC---CCcce----eee-ccc--ccc-cccc-ccchhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLS---ISVME----VVD-ANL--LSW-KDKH-FMTKEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~---~~~~~----v~d-~~l--~~~-~~~~-~~~~~~  452 (495)
                      ..+.++|+|+||+++.|++||+.|...    ..+... ....+.   .....    +.+ +..  ... .... ....+.
T Consensus       188 ~~~~~~Di~slG~~l~~l~~g~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (295)
T cd07837         188 HYSTPVDIWSVGCIFAEMSRKQPLFPG----DSELQQ-LLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPD  262 (295)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCCCCCC----CCHHHH-HHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccc
Confidence            356789999999999999999988532    222222 211110   00000    000 000  000 0000 000011


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+||++.|++.
T Consensus       263 ~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         263 LSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             cCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            2234677889999999999999999864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=96.24  E-value=0.0039  Score=60.31  Aligned_cols=76  Identities=9%  Similarity=0.097  Sum_probs=49.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|||||++.|++||+.|.+.     .+-....+........   -+.             .....+.++..
T Consensus       170 ~~~~~~~~DiwslGvil~~l~~G~~pf~~-----~~~~~~~~~i~~~~~~---~~~-------------~~~~~~~~li~  228 (318)
T cd05570         170 YQPYGPAVDWWALGVLLYEMLAGQSPFEG-----DDEDELFQSILEDEVR---YPR-------------WLSKEAKSILK  228 (318)
T ss_pred             CCCCCcchhhhhHHHHHHHHhhCCCCCCC-----CCHHHHHHHHHcCCCC---CCC-------------cCCHHHHHHHH
Confidence            34567789999999999999999999642     1222222222221110   000             11123667888


Q ss_pred             hcCCCCccCchhH-----HHHH
Q 011044          463 ECTVESPIRESTQ-----RKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~m-----~~v~  479 (495)
                      .|...+|.+||+.     .+++
T Consensus       229 ~~l~~dP~~R~s~~~~~~~~ll  250 (318)
T cd05570         229 SFLTKNPEKRLGCLPTGEQDIK  250 (318)
T ss_pred             HHccCCHHHcCCCCCCCHHHHh
Confidence            9999999999999     7764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=96.22  E-value=0.0025  Score=62.65  Aligned_cols=28  Identities=18%  Similarity=0.150  Sum_probs=23.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++||||||+++.|+++|+.|..
T Consensus       191 ~~~~~~~~DvwslG~~l~~l~~g~~pf~  218 (353)
T cd07850         191 GMGYKENVDIWSVGCIMGEMIRGTVLFP  218 (353)
T ss_pred             CCCCCCchhhHhHHHHHHHHHHCCCCCC
Confidence            3446778999999999999999998853

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=96.22  E-value=0.0037  Score=59.42  Aligned_cols=80  Identities=11%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCC-CHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEM-TLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~-~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      .+.++|||+||+++.|++||+.|...  .+.. ....+.+......      +..          .......+.++...|
T Consensus       185 ~~~~~Dv~slG~il~el~tg~~p~~~--~~~~~~~~~~~~~~~~~~------~~~----------~~~~~~~l~~li~~~  246 (288)
T cd05583         185 HDKAVDWWSLGVLTFELLTGASPFTV--DGEQNSQSEISRRILKSK------PPF----------PKTMSAEARDFIQKL  246 (288)
T ss_pred             CcchhhhHHHHHHHHHHHhCCCCccc--CcccchHHHHHHHHHccC------CCC----------CcccCHHHHHHHHHH
Confidence            46789999999999999999999632  1111 1222222222111      000          001112356778899


Q ss_pred             CCCCccCchhHHHHHHHHH
Q 011044          465 TVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~~l~  483 (495)
                      .+.+|.+||++++|.+.|+
T Consensus       247 l~~~p~~R~t~~~~~~~l~  265 (288)
T cd05583         247 LEKDPKKRLGANGADEIKN  265 (288)
T ss_pred             hcCCHhhccCcchHHHHhc
Confidence            9999999999999876664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=96.21  E-value=0.0037  Score=59.34  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|+++|+.|....-  .......+...+......+ .              ......+.++..
T Consensus       175 ~~~~~~~~Diws~G~~l~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~li~  237 (285)
T cd05605         175 NERYTFSPDWWGLGCLIYEMIEGKSPFRQRK--EKVKREEVERRVKEDQEEY-S--------------EKFSEAARSICR  237 (285)
T ss_pred             CCCCCccccchhHHHHHHHHHHCCCCCCCCc--hhhHHHHHHHHhhhccccc-C--------------cccCHHHHHHHH
Confidence            3456678999999999999999999964211  1111111211111110000 0              011223667899


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|...+|.+||     ++.++.
T Consensus       238 ~~l~~~P~~R~~~~~~~~~~l~  259 (285)
T cd05605         238 QLLTKDPGFRLGCRGEGAEEVK  259 (285)
T ss_pred             HHccCCHHHhcCCCCCCHHHHh
Confidence            99999999999     666763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=96.20  E-value=0.0033  Score=59.74  Aligned_cols=79  Identities=9%  Similarity=0.070  Sum_probs=46.7

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|+||||+++.|++||+.|....-. ......+.+. ....... ..              ......+.++.
T Consensus       174 ~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~-~~~~~~~~~~-~~~~~~~-~~--------------~~~~~~~~~li  236 (285)
T cd05632         174 NNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKE-KVKREEVDRR-VLETEEV-YS--------------AKFSEEAKSIC  236 (285)
T ss_pred             cCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHh-hhccccc-cC--------------ccCCHHHHHHH
Confidence            344567789999999999999999999643110 0011111111 1111000 00              01122366788


Q ss_pred             hhcCCCCccCchhHHH
Q 011044          462 MECTVESPIRESTQRK  477 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~  477 (495)
                      ..|...+|.+||++.+
T Consensus       237 ~~~l~~~P~~R~~~~~  252 (285)
T cd05632         237 KMLLTKDPKQRLGCQE  252 (285)
T ss_pred             HHHccCCHhHcCCCcc
Confidence            8999999999999543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=96.18  E-value=0.0028  Score=60.55  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.||++
T Consensus       256 ~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         256 DDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            45778999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=96.18  E-value=0.0056  Score=57.04  Aligned_cols=78  Identities=14%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|++|+++.|+++|+.|.+..-.   ....++.......... ..+              .....+.++..
T Consensus       173 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~i~  234 (258)
T cd05578         173 RQGYSVAVDWWSLGVTAYECLRGKRPYRGHSR---TIRDQIRAKQETADVL-YPA--------------TWSTEAIDAIN  234 (258)
T ss_pred             ccCCCCcccchhhHHHHHHHHhCCCCCCCCCc---cHHHHHHHHhcccccc-Ccc--------------cCcHHHHHHHH
Confidence            33467889999999999999999999753221   1223333222211000 000              11234667888


Q ss_pred             hcCCCCccCchhH--HHH
Q 011044          463 ECTVESPIRESTQ--RKL  478 (495)
Q Consensus       463 ~C~~~~p~~Rp~m--~~v  478 (495)
                      .|...+|.+||+.  .|+
T Consensus       235 ~~l~~~p~~R~~~~~~~l  252 (258)
T cd05578         235 KLLERDPQKRLGDNLKDL  252 (258)
T ss_pred             HHccCChhHcCCccHHHH
Confidence            9999999999999  554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=96.16  E-value=0.0029  Score=60.73  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+||++.|++||+.|..
T Consensus       181 ~~~~~DiwslG~il~~l~~g~~pf~  205 (303)
T cd07869         181 YSTCLDMWGVGCIFVEMIQGVAAFP  205 (303)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            4567899999999999999999964

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.16  E-value=2.3e-05  Score=78.97  Aligned_cols=181  Identities=24%  Similarity=0.254  Sum_probs=83.7

Q ss_pred             CCEEeCcCCcCCccCC----ccccCCCCCcEEEccCCcccccCChhHhhcC----CCCCEEEcccccCCcc----CCccc
Q 011044           81 LQALDLSFNWFYGSIP----SSIFNMSSLLSIYFNNNTLFGELPPNFCNQM----SNLESLFLKYNMFHGK----IPSTL  148 (495)
Q Consensus        81 L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l----~~L~~L~l~~n~l~~~----~~~~l  148 (495)
                      +..|.|.+|.+.....    ..+.....|..|++++|.+.+.--..+...+    ..|++|.+..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4455555555443211    2334445555555555555322222222211    2244455555554432    23334


Q ss_pred             CCCCCCCEEEcccCcCcc----ccCcccc----CCCCCCEEEccCCCCCCCC----ChhhhCccc-ccEEEecCCcCCCc
Q 011044          149 SSCKQLRELSLSSNYFSG----TIPKEIG----NLTKLTRLNLRQNKLQGEI----PEELGNLAE-LEMLWLQNNSLTGT  215 (495)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~l~~n~l~~~  215 (495)
                      .....++.++++.|.+..    .++..+.    ...++++|.+.+|.++...    ...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            445556666666655421    1111222    3455666666666654211    112233333 45566666665422


Q ss_pred             ----CchhhhcC-CCCceeeCCCCcCCCCCC----cccccccccceeeccCcccc
Q 011044          216 ----IPSSIFSL-SSLLNLDLSLNNFTGIIP----SSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       216 ----~~~~l~~l-~~L~~L~Ls~n~l~~~~~----~~l~~~~~L~~L~l~~n~l~  261 (495)
                          ....+..+ +.+++++++.|.++....    ..+..++.++++.+.+|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                12223333 455666666666654322    23344556666666666554

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=96.15  E-value=0.0068  Score=58.77  Aligned_cols=74  Identities=9%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.|+++|+.|...     .+....+........ .+ .+              .....+.++...|
T Consensus       176 ~~~~~~DiwslG~il~ell~G~~pf~~-----~~~~~~~~~~~~~~~-~~-~~--------------~~~~~~~~li~~~  234 (323)
T cd05584         176 GHGKAVDWWSLGALMYDMLTGAPPFTA-----ENRKKTIDKILKGKL-NL-PP--------------YLTPEARDLLKKL  234 (323)
T ss_pred             CCCCcceecccHHHHHHHhcCCCCCCC-----CCHHHHHHHHHcCCC-CC-CC--------------CCCHHHHHHHHHH
Confidence            346789999999999999999999642     122233333222211 00 00              0112356788899


Q ss_pred             CCCCccCch-----hHHHHH
Q 011044          465 TVESPIRES-----TQRKLL  479 (495)
Q Consensus       465 ~~~~p~~Rp-----~m~~v~  479 (495)
                      ...+|.+||     +..++.
T Consensus       235 l~~~p~~R~~~~~~~~~~l~  254 (323)
T cd05584         235 LKRNPSSRLGAGPGDAAEVQ  254 (323)
T ss_pred             cccCHhHcCCCCCCCHHHHh
Confidence            999999999     666653

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=96.05  E-value=0.0059  Score=59.29  Aligned_cols=79  Identities=10%  Similarity=0.184  Sum_probs=48.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccC-CCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFN-GEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~-~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|+|||||++.|++||+.|.+..-. .......++..........+  +..             ......++.
T Consensus       170 ~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~-------------~~~~~~~li  234 (327)
T cd05617         170 GEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRI--PRF-------------LSVKASHVL  234 (327)
T ss_pred             CCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCC--CCC-------------CCHHHHHHH
Confidence            44556789999999999999999999753221 12233344433332211100  100             012245678


Q ss_pred             hhcCCCCccCchhHH
Q 011044          462 MECTVESPIRESTQR  476 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~  476 (495)
                      ..|...+|.+|+++.
T Consensus       235 ~~~L~~dP~~R~~~~  249 (327)
T cd05617         235 KGFLNKDPKERLGCQ  249 (327)
T ss_pred             HHHhccCHHHcCCCC
Confidence            889999999999853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=96.04  E-value=0.0053  Score=59.69  Aligned_cols=83  Identities=10%  Similarity=0.139  Sum_probs=50.6

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccC-C--CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFN-G--EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~-~--~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      .....+.++|+|||||++.|++||+.|.+..-. +  .....+|...........     +-.          .....+.
T Consensus       169 ~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~----------~~~~~~~  233 (329)
T cd05588         169 RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIR-----IPR----------SLSVKAS  233 (329)
T ss_pred             cCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCC-----CCC----------CCCHHHH
Confidence            334556789999999999999999999763211 1  122334443333221110     000          1112356


Q ss_pred             HHHhhcCCCCccCchh------HHHHH
Q 011044          459 NLAMECTVESPIREST------QRKLL  479 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~------m~~v~  479 (495)
                      ++...|...+|.+||+      +.+++
T Consensus       234 ~li~~~L~~dP~~R~~~~~~~~~~~i~  260 (329)
T cd05588         234 SVLKGFLNKDPKERLGCHPQTGFRDIK  260 (329)
T ss_pred             HHHHHHhccCHHHcCCCCCCCCHHHHh
Confidence            7888999999999997      56663

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=96.03  E-value=0.0022  Score=61.37  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=49.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeeccccc---ccc----ccccchhhHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANLLS---WKD----KHFMTKEQCM  454 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l~~---~~~----~~~~~~~~~~  454 (495)
                      .+.++|||+||+++.|+++|+.|.+..  +...-..-+.......    ..++.......   ...    ..........
T Consensus       195 ~~~~~Di~slG~~~~el~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (302)
T cd07864         195 YGPAIDVWSCGCILGELFTKKPIFQAN--QELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIP  272 (302)
T ss_pred             CCchhHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCC
Confidence            456899999999999999999886531  1111111111111110    00110000000   000    0000001123


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.+++.
T Consensus       273 ~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         273 TPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            45778899999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=96.02  E-value=0.0042  Score=58.80  Aligned_cols=77  Identities=8%  Similarity=0.116  Sum_probs=47.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||||+++.|++||+.|.......  .. ..+.......     +..+.          +.....+.++...|.
T Consensus       173 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~-~~~~~~~~~~-----~~~~~----------~~~~~~~~~li~~~l  234 (279)
T cd05633         173 YDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DK-HEIDRMTLTV-----NVELP----------DSFSPELKSLLEGLL  234 (279)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCcCCCCCc--CH-HHHHHHhhcC-----CcCCc----------cccCHHHHHHHHHHh
Confidence            567899999999999999999996542211  11 1222111100     01110          011223556678899


Q ss_pred             CCCccCch-----hHHHHHH
Q 011044          466 VESPIRES-----TQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp-----~m~~v~~  480 (495)
                      ..+|.+||     +++++++
T Consensus       235 ~~~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         235 QRDVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             cCCHHHhcCCCCCCHHHHHh
Confidence            99999999     5888754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=96.02  E-value=0.0025  Score=61.51  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||||+++.|++||+.|..
T Consensus       193 ~~~~~DiwSlG~il~el~tg~~~f~  217 (317)
T cd07867         193 YTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cCcHHHHHhHHHHHHHHHhCCCCcc
Confidence            5678999999999999999998864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=96.00  E-value=0.0059  Score=57.15  Aligned_cols=28  Identities=25%  Similarity=0.419  Sum_probs=23.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++||||||+++.|+++|+.|..
T Consensus       183 ~~~~~~~~Dv~slG~il~el~~g~~p~~  210 (265)
T cd06652         183 GEGYGRKADIWSVGCTVVEMLTEKPPWA  210 (265)
T ss_pred             CCCCCcchhHHHHHHHHHHHhhCCCCCC
Confidence            3446778999999999999999999953

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=95.99  E-value=0.0065  Score=58.73  Aligned_cols=73  Identities=12%  Similarity=0.153  Sum_probs=45.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|....     +-............ .+ ..              .....+.++...
T Consensus       173 ~~~~~~~DiwslG~il~el~tg~~p~~~~-----~~~~~~~~i~~~~~-~~-p~--------------~~~~~~~~li~~  231 (318)
T cd05582         173 RGHTQSADWWSFGVLMFEMLTGSLPFQGK-----DRKETMTMILKAKL-GM-PQ--------------FLSPEAQSLLRA  231 (318)
T ss_pred             CCCCCccceeccceEeeeeccCCCCCCCC-----CHHHHHHHHHcCCC-CC-CC--------------CCCHHHHHHHHH
Confidence            34567899999999999999999996431     11222222222111 00 00              011225577789


Q ss_pred             cCCCCccCchhHHH
Q 011044          464 CTVESPIRESTQRK  477 (495)
Q Consensus       464 C~~~~p~~Rp~m~~  477 (495)
                      |.+.+|.+||++.+
T Consensus       232 ~l~~~P~~R~~a~~  245 (318)
T cd05582         232 LFKRNPANRLGAGP  245 (318)
T ss_pred             HhhcCHhHcCCCCC
Confidence            99999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=95.99  E-value=0.0055  Score=59.42  Aligned_cols=74  Identities=9%  Similarity=0.104  Sum_probs=47.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|+++|+.|...     .+..+..+........  ..+.+              ...+.++..
T Consensus       170 ~~~~~~~~DvwslG~il~ell~g~~pf~~-----~~~~~~~~~i~~~~~~--~~~~~--------------~~~~~~li~  228 (323)
T cd05575         170 KQPYDRTVDWWCLGAVLYEMLYGLPPFYS-----RDTAEMYDNILNKPLR--LKPNI--------------SVSARHLLE  228 (323)
T ss_pred             CCCCCccccccccchhhhhhhcCCCCCCC-----CCHHHHHHHHHcCCCC--CCCCC--------------CHHHHHHHH
Confidence            34456789999999999999999999532     2333333333322110  00111              123566788


Q ss_pred             hcCCCCccCchhHHH
Q 011044          463 ECTVESPIRESTQRK  477 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~  477 (495)
                      .|.+.+|.+||++.+
T Consensus       229 ~~l~~~p~~R~~~~~  243 (323)
T cd05575         229 GLLQKDRTKRLGAKD  243 (323)
T ss_pred             HHhhcCHHhCCCCCC
Confidence            899999999998853

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=95.99  E-value=0.0046  Score=59.99  Aligned_cols=78  Identities=10%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.||++|+.|...     .+..+..+.......  ...+.              ......++..
T Consensus       170 ~~~~~~~~DvwslG~il~el~~G~~pf~~-----~~~~~~~~~~~~~~~--~~~~~--------------~~~~~~~ll~  228 (325)
T cd05604         170 KQPYDNTVDWWCLGAVLYEMLYGLPPFYC-----RDVAEMYDNILHKPL--VLRPG--------------ASLTAWSILE  228 (325)
T ss_pred             CCCCCCcCccccccceehhhhcCCCCCCC-----CCHHHHHHHHHcCCc--cCCCC--------------CCHHHHHHHH
Confidence            44456789999999999999999999532     122233332222111  00111              1123557788


Q ss_pred             hcCCCCccCchhHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQD  481 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~  481 (495)
                      .|...+|.+||++++.+++
T Consensus       229 ~ll~~~p~~R~~~~~~~~~  247 (325)
T cd05604         229 ELLEKDRQRRLGAKEDFLE  247 (325)
T ss_pred             HHhccCHHhcCCCCCCHHH
Confidence            8999999999988754433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=95.95  E-value=0.0086  Score=55.89  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+|+||+++.|+++|+.|....-.   +-.++.+....... .   ...          .......+.++...
T Consensus       167 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~-~---~~~----------~~~~~~~~~~~i~~  229 (262)
T cd05572         167 KGYDFSVDYWSLGILLYELLTGRPPFGEDDE---DPMEIYNDILKGNG-K---LEF----------PNYIDKAAKDLIKQ  229 (262)
T ss_pred             CCCCChhhhhhhHHHHHHHHhCCCCcCCCCC---CHHHHHHHHhccCC-C---CCC----------CcccCHHHHHHHHH
Confidence            3456789999999999999999999653221   22333333221110 0   000          00112347788999


Q ss_pred             cCCCCccCchhHHH
Q 011044          464 CTVESPIRESTQRK  477 (495)
Q Consensus       464 C~~~~p~~Rp~m~~  477 (495)
                      |...+|.+||+|.+
T Consensus       230 ~l~~~p~~R~~~~~  243 (262)
T cd05572         230 LLRRNPEERLGNLK  243 (262)
T ss_pred             HccCChhhCcCCcc
Confidence            99999999999544

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=95.94  E-value=0.0088  Score=57.92  Aligned_cols=76  Identities=11%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.|++||+.|.+..     +-....+.......   .-+..             .-..+.++..
T Consensus       170 ~~~~~~~~DvwslG~il~el~tg~~Pf~~~-----~~~~~~~~i~~~~~---~~p~~-------------~~~~~~~ll~  228 (321)
T cd05591         170 ELEYGPSVDWWALGVLMYEMMAGQPPFEAD-----NEDDLFESILHDDV---LYPVW-------------LSKEAVSILK  228 (321)
T ss_pred             CCCCCCccceechhHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCC---CCCCC-------------CCHHHHHHHH
Confidence            344567899999999999999999996531     22233332222111   00100             0122567788


Q ss_pred             hcCCCCccCch-------hHHHHH
Q 011044          463 ECTVESPIRES-------TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-------~m~~v~  479 (495)
                      .|...+|.+||       ++.++.
T Consensus       229 ~~L~~dp~~R~~~~~~~~~~~~~~  252 (321)
T cd05591         229 AFMTKNPNKRLGCVASQGGEDAIK  252 (321)
T ss_pred             HHhccCHHHcCCCCCCCCCHHHHh
Confidence            89999999999       556653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=95.93  E-value=0.0075  Score=58.24  Aligned_cols=75  Identities=9%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.||++|+.|...     .+-.+.........      +.+-.          .....+.++..
T Consensus       170 ~~~~~~~~DvwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~------~~~~~----------~~~~~~~~ll~  228 (316)
T cd05592         170 GQKYNESVDWWSFGVLLYEMLIGQSPFHG-----EDEDELFDSILNDR------PHFPR----------WISKEAKDCLS  228 (316)
T ss_pred             CCCCCCcccchhHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCC------CCCCC----------CCCHHHHHHHH
Confidence            34456789999999999999999999642     12222222221111      00000          01122556778


Q ss_pred             hcCCCCccCchhHHHH
Q 011044          463 ECTVESPIRESTQRKL  478 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v  478 (495)
                      .|...+|.+||++.+.
T Consensus       229 ~~l~~~P~~R~~~~~~  244 (316)
T cd05592         229 KLFERDPTKRLGVDGD  244 (316)
T ss_pred             HHccCCHHHcCCChHH
Confidence            9999999999998643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=95.92  E-value=0.0018  Score=61.64  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+|+++.|+++|+.|..
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~~f~  208 (293)
T cd07843         184 YSTAIDMWSVGCIFAELLTKKPLFP  208 (293)
T ss_pred             ccchhhHHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999988753

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=95.91  E-value=0.0056  Score=57.90  Aligned_cols=77  Identities=10%  Similarity=0.102  Sum_probs=47.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||||+++.|+++|+.|.+.....  ......+....      .+..+..          ..-..+.++...|.
T Consensus       173 ~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~------~~~~~~~----------~~s~~~~~li~~~l  234 (278)
T cd05606         173 YDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHEIDRMTLT------MAVELPD----------SFSPELRSLLEGLL  234 (278)
T ss_pred             CCcccchHhHHHHHHHHHhCCCCCCCCCcc--chHHHHHHhhc------cCCCCCC----------cCCHHHHHHHHHHh
Confidence            567899999999999999999997542111  11111111110      0111100          11233667788999


Q ss_pred             CCCccCch-----hHHHHHH
Q 011044          466 VESPIRES-----TQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp-----~m~~v~~  480 (495)
                      ..+|.+||     ++.++++
T Consensus       235 ~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         235 QRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             hcCHHhccCCCCCCHHHHHh
Confidence            99999999     8888853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=95.89  E-value=0.0026  Score=61.88  Aligned_cols=92  Identities=9%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeecccc---ccc-----cccccchhhH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANLL---SWK-----DKHFMTKEQC  453 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l~---~~~-----~~~~~~~~~~  453 (495)
                      .+.++|+||+|+++.|+++|+.|....-  .......+...+...    ...+.++...   ...     ..........
T Consensus       187 ~~~~~Di~slGv~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (332)
T cd07857         187 YTKAIDVWSVGCILAELLGRKPVFKGKD--YVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNA  264 (332)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCcCCCCCC--HHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCC
Confidence            5678999999999999999998854210  011111111111100    0000010000   000     0000000012


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      -..+.++...|...+|.+||++.+++
T Consensus       265 ~~~~~~li~~~l~~~P~~R~t~~~ll  290 (332)
T cd07857         265 NPLALDLLEKLLAFDPTKRISVEEAL  290 (332)
T ss_pred             CHHHHHHHHHHccCCcccCCCHHHHh
Confidence            34577899999999999999999985

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=95.88  E-value=0.0097  Score=57.67  Aligned_cols=76  Identities=9%  Similarity=0.159  Sum_probs=47.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|....     +.....+.......      .+-.          .....+.++..
T Consensus       169 ~~~~~~~~DiwSlG~il~elltg~~Pf~~~-----~~~~~~~~~~~~~~------~~p~----------~~~~~~~~li~  227 (323)
T cd05571         169 DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEEI------RFPR----------TLSPEAKSLLA  227 (323)
T ss_pred             CCCCCccccCcccchhhhhhhcCCCCCCCC-----CHHHHHHHHHcCCC------CCCC----------CCCHHHHHHHH
Confidence            344567899999999999999999996421     11122222111110      1100          01122567788


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|...+|.+||     +..+++
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~ll  249 (323)
T cd05571         228 GLLKKDPKQRLGGGPEDAKEIM  249 (323)
T ss_pred             HHccCCHHHcCCCCCCCHHHHH
Confidence            99999999999     677764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=95.86  E-value=0.004  Score=60.68  Aligned_cols=93  Identities=14%  Similarity=0.094  Sum_probs=49.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce----eee-ccccc---ccccc-ccchhhHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME----VVD-ANLLS---WKDKH-FMTKEQCMSF  456 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~----v~d-~~l~~---~~~~~-~~~~~~~~~~  456 (495)
                      .+.++||||+|+++.|++||+.|....-  .......+..........    ..+ +....   ..... ......+...
T Consensus       211 ~~~~~Dv~slG~~l~el~tg~~p~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (335)
T PTZ00024        211 YHFAVDMWSVGCIFAELLTGKPLFPGEN--EIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDD  288 (335)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChH
Confidence            4678999999999999999998854211  111111121111110000    000 00000   00000 0000012234


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +.++...|...+|.+||++.|++.
T Consensus       289 ~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        289 AIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHHHHHHcCCCchhccCHHHHhc
Confidence            678899999999999999999964

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=95.85  E-value=0.0039  Score=60.54  Aligned_cols=94  Identities=16%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce----eeecccccc----ccccccc----hhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME----VVDANLLSW----KDKHFMT----KEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~----v~d~~l~~~----~~~~~~~----~~~  452 (495)
                      ..+.++|+||||+++.|+++|+.|....-.  ......+.........+    .........    .......    ...
T Consensus       183 ~~~~~sDi~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (330)
T cd07834         183 RYTKAIDIWSVGCIFAELLTRKPLFPGRDY--IDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPG  260 (330)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCCCcCCCCH--HHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhccc
Confidence            467789999999999999999988542210  11111111111100000    000000000    0000000    001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|.+.+|.+||++.+++.
T Consensus       261 ~~~~~~~li~~~l~~~P~~Rpt~~~ll~  288 (330)
T cd07834         261 ASPEAIDLLEKMLVFDPKKRITADEALA  288 (330)
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            1234678999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=95.81  E-value=0.0086  Score=57.97  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|||||++.|++||+.|...     .+-....+.......   ..+..             ....+.++..
T Consensus       170 ~~~~~~~~DiwslG~il~el~~g~~Pf~~-----~~~~~~~~~i~~~~~---~~~~~-------------~~~~~~~li~  228 (320)
T cd05590         170 EMLYGPSVDWWAMGVLLYEMLCGHAPFEA-----ENEDDLFEAILNDEV---VYPTW-------------LSQDAVDILK  228 (320)
T ss_pred             CCCCCCccchhhhHHHHHHHhhCCCCCCC-----CCHHHHHHHHhcCCC---CCCCC-------------CCHHHHHHHH
Confidence            34456789999999999999999999642     222333333322211   01110             0122567788


Q ss_pred             hcCCCCccCchhH
Q 011044          463 ECTVESPIRESTQ  475 (495)
Q Consensus       463 ~C~~~~p~~Rp~m  475 (495)
                      .|...+|.+||+.
T Consensus       229 ~~L~~dP~~R~~~  241 (320)
T cd05590         229 AFMTKNPTMRLGS  241 (320)
T ss_pred             HHcccCHHHCCCC
Confidence            9999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=95.81  E-value=0.0061  Score=57.88  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|+||||+++.|+++|+.|....... ..... ++..... ..    ....          ......+.++.
T Consensus       174 ~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~-~~~~~-~~~~~~~-~~----~~~~----------~~~~~~~~~li  236 (285)
T cd05630         174 KNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK-IKREE-VERLVKE-VQ----EEYS----------EKFSPDARSLC  236 (285)
T ss_pred             cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCcc-chHHH-HHhhhhh-hh----hhcC----------ccCCHHHHHHH
Confidence            3455677899999999999999999997532110 11001 1110000 00    0000          01122356778


Q ss_pred             hhcCCCCccCchh-----HHHHHH
Q 011044          462 MECTVESPIREST-----QRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~-----m~~v~~  480 (495)
                      ..|...+|.+||+     +.|+.+
T Consensus       237 ~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         237 KMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             HHHhhcCHHHccCCCCCchHHHHc
Confidence            8899999999999     677754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.80  E-value=0.01  Score=57.53  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc--ce--eeeccccccccccccchhhHHHHHHHHHh
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV--ME--VVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~--~~--v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .-|+|+|||||-.+|+.+|..|....     +=.+..-..+.+..  .+  ..|..-          ....-..+-+..-
T Consensus       210 dfKaDIwSfGITA~ELA~G~aPf~k~-----pPmkvLl~tLqn~pp~~~t~~~~~d~----------~k~~~ksf~e~i~  274 (516)
T KOG0582|consen  210 DFKADIWSFGITACELAHGHAPFSKY-----PPMKVLLLTLQNDPPTLLTSGLDKDE----------DKKFSKSFREMIA  274 (516)
T ss_pred             cchhhhhhhhHHHHHHhcCCCCcccC-----ChHHHHHHHhcCCCCCcccccCChHH----------hhhhcHHHHHHHH
Confidence            34799999999999999999996432     22233333343321  11  111110          0011123667778


Q ss_pred             hcCCCCccCchhHHHHH
Q 011044          463 ECTVESPIRESTQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~  479 (495)
                      .|+..+|..||+..+.+
T Consensus       275 ~CL~kDP~kRptAskLl  291 (516)
T KOG0582|consen  275 LCLVKDPSKRPTASKLL  291 (516)
T ss_pred             HHhhcCcccCCCHHHHh
Confidence            89999999999999974

>PHA03212 serine/threonine kinase US3; Provisional

Probab=95.78  E-value=0.0056  Score=61.07  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCC
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      ...+.++|+||+||++.|++||+.|.
T Consensus       258 ~~~~~~~DiwSlGvil~elltg~~p~  283 (391)
T PHA03212        258 DPYGPAVDIWSAGIVLFEMATCHDSL  283 (391)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence            34567899999999999999999874

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=95.76  E-value=0.0085  Score=58.29  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|||||||++.|++||+.|.+..-. ........+......      +.+..          .....+.++...|.
T Consensus       184 ~~~~~DiwslG~il~elltg~~pf~~~~~-~~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~li~~~l  246 (332)
T cd05614         184 HGKAVDWWSLGILIFELLTGASPFTLEGE-RNTQSEVSRRILKCD------PPFPS----------FIGPEAQDLLHKLL  246 (332)
T ss_pred             CCCccccccchhhhhhhhcCCCCCCCCCC-CCCHHHHHHHHhcCC------CCCCC----------CCCHHHHHHHHHHc
Confidence            45689999999999999999999653211 112222222222111      11100          01122556788999


Q ss_pred             CCCccCch-----hHHHHH
Q 011044          466 VESPIRES-----TQRKLL  479 (495)
Q Consensus       466 ~~~p~~Rp-----~m~~v~  479 (495)
                      ..+|.+||     +..+++
T Consensus       247 ~~dp~~R~~~~~~~~~~~l  265 (332)
T cd05614         247 RKDPKKRLGAGPQGASEIK  265 (332)
T ss_pred             CCCHHHcCCCCCCCHHHHH
Confidence            99999999     555664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=95.75  E-value=0.0097  Score=62.02  Aligned_cols=85  Identities=20%  Similarity=0.335  Sum_probs=60.7

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ...+.+.++|||+|||..-|++| |.+|.+..-.+  .+++.++..-          ++        ...+-|...+..+
T Consensus       873 ~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~--eI~dlle~ge----------RL--------sqPpiCtiDVy~~  932 (1177)
T KOG1025|consen  873 RIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAE--EIPDLLEKGE----------RL--------SQPPICTIDVYMV  932 (1177)
T ss_pred             hccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHH--HhhHHHhccc----------cC--------CCCCCccHHHHHH
Confidence            34455678999999999999998 78887654332  2223322111          11        1234578889999


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ...|...++..||.+++...+..+..
T Consensus       933 mvkCwmid~~~rp~fkel~~~fs~~a  958 (1177)
T KOG1025|consen  933 MVKCWMIDADSRPTFKELAEEFSRMA  958 (1177)
T ss_pred             HHHHhccCcccCccHHHHHHHHHHHh
Confidence            99999999999999999988776654

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=95.71  E-value=0.004  Score=58.96  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+|+||+++.|+++|+.|..
T Consensus       178 ~~~~~Dv~slG~~l~~l~~g~~~~~  202 (284)
T cd07836         178 YSTSIDIWSVGCIMAEMITGRPLFP  202 (284)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            4568999999999999999998853

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=95.66  E-value=0.0052  Score=60.53  Aligned_cols=27  Identities=19%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCC
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      ....+.++|||||||++.|++++..|.
T Consensus       230 ~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        230 RDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            445677899999999999999976653

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=95.65  E-value=0.0093  Score=56.80  Aligned_cols=75  Identities=13%  Similarity=0.099  Sum_probs=47.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|...     .+.....+.......      .+-.          ..-..+.++...
T Consensus       173 ~~~~~~~DiwSlG~il~~l~~g~~pf~~-----~~~~~~~~~i~~~~~------~~~~----------~~~~~~~~li~~  231 (291)
T cd05612         173 KGHNKAVDWWALGILIYEMLVGYPPFFD-----DNPFGIYEKILAGKL------EFPR----------HLDLYAKDLIKK  231 (291)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCc------CCCc----------cCCHHHHHHHHH
Confidence            3456789999999999999999999542     122223332222211      0000          001235678899


Q ss_pred             cCCCCccCchh-----HHHHH
Q 011044          464 CTVESPIREST-----QRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp~-----m~~v~  479 (495)
                      |...+|.+||+     ..|+.
T Consensus       232 ~l~~dp~~R~~~~~~~~~~~l  252 (291)
T cd05612         232 LLVVDRTRRLGNMKNGADDVK  252 (291)
T ss_pred             HcCCCHHHccCCccCCHHHHh
Confidence            99999999995     66653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=95.64  E-value=0.0077  Score=60.29  Aligned_cols=96  Identities=18%  Similarity=0.327  Sum_probs=65.3

Q ss_pred             hhhhcCCCccccCCCcceeehhhhhhcccC--CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044          376 FLWEYGREGRVSTNGDIYNFGIMIMETFTA--KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC  453 (495)
Q Consensus       376 ~l~~~~~~~~~~~~~dvysfgilllE~~tg--k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~  453 (495)
                      ..||.-..++.++++|||.||+-+-|+++-  .+|...+-.+  .+++=....++++-..++-.           ....|
T Consensus       706 mawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e--~vven~~~~~~~~~~~~~l~-----------~P~~c  772 (807)
T KOG1094|consen  706 MAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDE--QVVENAGEFFRDQGRQVVLS-----------RPPAC  772 (807)
T ss_pred             hhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHH--HHHHhhhhhcCCCCcceecc-----------CCCcC
Confidence            457888889999999999999999999864  4565433221  12222222333332221111           12257


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ...+.++.+.|-.-+..+||++.++..-|.+
T Consensus       773 p~~lyelml~Cw~~es~~RPsFe~lh~~lq~  803 (807)
T KOG1094|consen  773 PQGLYELMLRCWRRESEQRPSFEQLHLFLQE  803 (807)
T ss_pred             cHHHHHHHHHHhchhhhcCCCHHHHHHHHHH
Confidence            7789999999999999999999999877765

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=95.64  E-value=0.011  Score=61.91  Aligned_cols=86  Identities=12%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCcccc--------CCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIF--------NGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~--------~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      .+.+.|||||||+++||+++.-|.+...        ..+.++..|.+...+...     +.+......    ........
T Consensus       356 ~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~d~~~~~~  426 (566)
T PLN03225        356 LPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRAS-----PDLRRGFEV----LDLDGGAG  426 (566)
T ss_pred             CCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccc-----hhhhhhhhh----ccccchHH
Confidence            4567899999999999999876654311        112344455432221110     000000000    00001123


Q ss_pred             HHHHhhcCCCCccCchhHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .++...|...+|.+||++.++++
T Consensus       427 ~dLi~~mL~~dP~kR~ta~e~L~  449 (566)
T PLN03225        427 WELLKSMMRFKGRQRISAKAALA  449 (566)
T ss_pred             HHHHHHHccCCcccCCCHHHHhC
Confidence            47888999999999999999954

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=95.63  E-value=0.0086  Score=60.54  Aligned_cols=78  Identities=12%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH-H
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF-V  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~-~  457 (495)
                      |.......+..+|+||+|++|.||++|+.|....-. +..++.-++   .....                   +++++ .
T Consensus       483 Evl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~-~~ei~~~i~---~~~~s-------------------~~vS~~A  539 (612)
T KOG0603|consen  483 EVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPA-GIEIHTRIQ---MPKFS-------------------ECVSDEA  539 (612)
T ss_pred             hhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCc-hHHHHHhhc---CCccc-------------------cccCHHH
Confidence            333344467789999999999999999999654332 222222111   11111                   11111 2


Q ss_pred             HHHHhhcCCCCccCchhHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      -.+.-.+...+|.+||+|.++.
T Consensus       540 KdLl~~LL~~dP~~Rl~~~~i~  561 (612)
T KOG0603|consen  540 KDLLQQLLQVDPALRLGADEIG  561 (612)
T ss_pred             HHHHHHhccCChhhCcChhhhc
Confidence            2356678899999999999984

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=95.63  E-value=0.0062  Score=59.02  Aligned_cols=76  Identities=11%  Similarity=0.126  Sum_probs=46.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++|+|||||++.|++||+.|.+..     +-....+........  ...              .....+.
T Consensus       171 E~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~-----~~~~~~~~i~~~~~~--~p~--------------~~s~~~~  229 (323)
T cd05616         171 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHNVA--YPK--------------SMSKEAV  229 (323)
T ss_pred             HHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCCC--CCC--------------cCCHHHH
Confidence            3333445678899999999999999999996432     111222221111100  000              0112356


Q ss_pred             HHHhhcCCCCccCchhH
Q 011044          459 NLAMECTVESPIRESTQ  475 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m  475 (495)
                      .+...|...+|.+|++.
T Consensus       230 ~li~~~l~~~p~~R~~~  246 (323)
T cd05616         230 AICKGLMTKHPGKRLGC  246 (323)
T ss_pred             HHHHHHcccCHHhcCCC
Confidence            78899999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=95.61  E-value=0.0092  Score=57.89  Aligned_cols=77  Identities=9%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||++|+.|...     .+...+.+........  ..+.              ....+.++..
T Consensus       170 ~~~~~~~~DiwslG~il~el~~g~~pf~~-----~~~~~~~~~i~~~~~~--~~~~--------------~~~~~~~li~  228 (325)
T cd05602         170 KQPYDRTVDWWCLGAVLYEMLYGLPPFYS-----RNTAEMYDNILNKPLQ--LKPN--------------ITNSARHLLE  228 (325)
T ss_pred             CCCCCCccccccccHHHHHHhcCCCCCCC-----CCHHHHHHHHHhCCcC--CCCC--------------CCHHHHHHHH
Confidence            34456789999999999999999999642     1222333322221110  0111              1122556777


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||+..+.+.
T Consensus       229 ~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         229 GLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             HHcccCHHHCCCCCCCHH
Confidence            899999999998875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=95.61  E-value=0.013  Score=56.85  Aligned_cols=73  Identities=11%  Similarity=0.119  Sum_probs=45.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+|||||++.|+++|+.|...     .+..............      ..          ......+.++...
T Consensus       176 ~~~~~~~DiwslG~il~el~~G~~pf~~-----~~~~~~~~~i~~~~~~------~p----------~~~~~~~~~li~~  234 (324)
T cd05589         176 TSYTRAVDWWGLGVLIYEMLVGESPFPG-----DDEEEVFDSIVNDEVR------YP----------RFLSREAISIMRR  234 (324)
T ss_pred             CCCCcccchhhHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCCC------CC----------CCCCHHHHHHHHH
Confidence            3456789999999999999999999542     1222333222221110      00          0112235678889


Q ss_pred             cCCCCccCchhHHH
Q 011044          464 CTVESPIRESTQRK  477 (495)
Q Consensus       464 C~~~~p~~Rp~m~~  477 (495)
                      |...+|.+||++.+
T Consensus       235 ~L~~dP~~R~~~~~  248 (324)
T cd05589         235 LLRRNPERRLGSGE  248 (324)
T ss_pred             HhhcCHhHcCCCCC
Confidence            99999999996544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=95.61  E-value=0.0061  Score=58.91  Aligned_cols=75  Identities=13%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|+++|+.|....     +.....+......      +.+...       .   -..+.++..
T Consensus       170 ~~~~~~~~DvwslG~il~el~~G~~pf~~~-----~~~~~~~~i~~~~------~~~~~~-------~---~~~~~~li~  228 (316)
T cd05619         170 GQKYNTSVDWWSFGVLLYEMLIGQSPFHGH-----DEEELFQSIRMDN------PCYPRW-------L---TREAKDILV  228 (316)
T ss_pred             CCCCCchhhhhhHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCC------CCCCcc-------C---CHHHHHHHH
Confidence            344677899999999999999999996421     1122222111111      101000       0   112556778


Q ss_pred             hcCCCCccCchhHH-HH
Q 011044          463 ECTVESPIRESTQR-KL  478 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~-~v  478 (495)
                      .|...+|.+||++. ++
T Consensus       229 ~~l~~~P~~R~~~~~~l  245 (316)
T cd05619         229 KLFVREPERRLGVKGDI  245 (316)
T ss_pred             HHhccCHhhcCCChHHH
Confidence            89999999999997 44

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=95.60  E-value=0.0038  Score=60.29  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+||++.|++||+.|..
T Consensus       193 ~~~~~DiwslG~il~el~~g~~~f~  217 (317)
T cd07868         193 YTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cCchhhHHHHHHHHHHHHhCCCCcc
Confidence            4668999999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=95.59  E-value=0.014  Score=57.74  Aligned_cols=26  Identities=15%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|||||||++.|++||+.|..
T Consensus       223 ~~~~~~DiwSlGvilyelltG~~Pf~  248 (370)
T cd05596         223 YYGRECDWWSVGVFLYEMLVGDTPFY  248 (370)
T ss_pred             CCCCceeeeehhHHHHHHHhCCCCcC
Confidence            45678999999999999999999953

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=95.53  E-value=0.011  Score=57.21  Aligned_cols=73  Identities=11%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.||++|+.|...     .+...+.+....... .     +          .......+.++..
T Consensus       170 ~~~~~~~~DiwslG~il~el~~g~~pf~~-----~~~~~~~~~i~~~~~-~-----~----------~~~~~~~~~~li~  228 (321)
T cd05603         170 KEPYDRTVDWWCLGAVLYEMLYGLPPFYS-----RDVSQMYDNILHKPL-Q-----L----------PGGKTVAACDLLV  228 (321)
T ss_pred             CCCCCCcCcccccchhhhhhhcCCCCCCC-----CCHHHHHHHHhcCCC-C-----C----------CCCCCHHHHHHHH
Confidence            34456789999999999999999999532     233333332222110 0     0          0011223667889


Q ss_pred             hcCCCCccCchhHH
Q 011044          463 ECTVESPIRESTQR  476 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~  476 (495)
                      .|.+.+|.+||+..
T Consensus       229 ~~l~~~p~~R~~~~  242 (321)
T cd05603         229 GLLHKDQRRRLGAK  242 (321)
T ss_pred             HHccCCHhhcCCCC
Confidence            99999999998754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=95.52  E-value=0.006  Score=58.68  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++||||+|+++.|++||+.|..
T Consensus       181 ~~~~~~DiwslG~il~el~tg~~pf~  206 (309)
T cd07872         181 EYSTQIDMWGVGCIFFEMASGRPLFP  206 (309)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            35668999999999999999998854

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=95.51  E-value=0.013  Score=56.85  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=46.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.||+||+.|...    . +-.+..+....... .+  +..             .-..+.++..
T Consensus       189 ~~~~~~~~DiwslG~il~elltg~~pf~~----~-~~~~~~~~i~~~~~-~~--p~~-------------~~~~~~~li~  247 (329)
T PTZ00263        189 SKGHGKAVDWWTMGVLLYEFIAGYPPFFD----D-TPFRIYEKILAGRL-KF--PNW-------------FDGRARDLVK  247 (329)
T ss_pred             CCCCCCcceeechHHHHHHHHcCCCCCCC----C-CHHHHHHHHhcCCc-CC--CCC-------------CCHHHHHHHH
Confidence            33456789999999999999999999532    2 11222222222111 00  000             0112557888


Q ss_pred             hcCCCCccCchh-----HHHHH
Q 011044          463 ECTVESPIREST-----QRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~-----m~~v~  479 (495)
                      .|...+|.+||+     ..+++
T Consensus       248 ~~L~~dP~~R~~~~~~~~~~ll  269 (329)
T PTZ00263        248 GLLQTDHTKRLGTLKGGVADVK  269 (329)
T ss_pred             HHhhcCHHHcCCCCCCCHHHHh
Confidence            999999999996     56653

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=95.47  E-value=0.0084  Score=57.64  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||+|+++.|+++|+.|..
T Consensus       186 ~~~~~DvwslG~il~el~~g~~~f~  210 (309)
T cd07845         186 YTTAIDMWAVGCILAELLAHKPLLP  210 (309)
T ss_pred             cCchHHHHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999998854

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=95.47  E-value=0.0058  Score=58.09  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=22.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|+||+||++.|++||+.|..
T Consensus       180 ~~~~~~DiwslG~~l~~l~~g~~pf~  205 (288)
T cd07871         180 EYSTPIDMWGVGCILYEMATGRPMFP  205 (288)
T ss_pred             ccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            35667999999999999999998853

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=95.47  E-value=0.017  Score=56.20  Aligned_cols=77  Identities=9%  Similarity=0.191  Sum_probs=47.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|||||++.|++||+.|...     .+.....+.......      .+..          .....+.++..
T Consensus       169 ~~~~~~~~DiwslGvil~elltG~~Pf~~-----~~~~~~~~~~~~~~~------~~p~----------~~~~~~~~li~  227 (328)
T cd05593         169 DNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHEKLFELILMEDI------KFPR----------TLSADAKSLLS  227 (328)
T ss_pred             CCCCCccCCccccchHHHHHhhCCCCCCC-----CCHHHHHHHhccCCc------cCCC----------CCCHHHHHHHH
Confidence            34456789999999999999999999532     122233322221110      0100          01122556777


Q ss_pred             hcCCCCccCch-----hHHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~~  480 (495)
                      .|...+|.+||     +..++++
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         228 GLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             HHcCCCHHHcCCCCCCCHHHHhc
Confidence            89999999997     7777753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=95.46  E-value=0.02  Score=56.49  Aligned_cols=28  Identities=14%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.||++|+.|..
T Consensus       210 ~~~~~~~~DvwSlGvil~ell~G~~Pf~  237 (363)
T cd05628         210 QTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (363)
T ss_pred             CCCCCCchhhhhhHHHHHHHHhCCCCCC
Confidence            3446678999999999999999999964

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=95.46  E-value=0.0065  Score=59.07  Aligned_cols=73  Identities=8%  Similarity=0.045  Sum_probs=44.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||+||++.||+||+.|...     .+..+..+.......      ++...         .....+.++...|.
T Consensus       174 ~~~~~DvwslGvil~elltG~~Pf~~-----~~~~~~~~~i~~~~~------~~~~~---------~~~~~~~~li~~~L  233 (330)
T cd05586         174 YTKHVDFWSLGVLVFEMCCGWSPFYA-----EDTQQMYRNIAFGKV------RFPKN---------VLSDEGRQFVKGLL  233 (330)
T ss_pred             CCCccceeccccEEEEeccCCCCCCC-----CCHHHHHHHHHcCCC------CCCCc---------cCCHHHHHHHHHHc
Confidence            46789999999999999999999542     122232222221110      01000         00112456778999


Q ss_pred             CCCccCchhHHHH
Q 011044          466 VESPIRESTQRKL  478 (495)
Q Consensus       466 ~~~p~~Rp~m~~v  478 (495)
                      ..+|.+||+..+.
T Consensus       234 ~~~P~~R~~~~~~  246 (330)
T cd05586         234 NRNPQHRLGAHRD  246 (330)
T ss_pred             CCCHHHCCCCCCC
Confidence            9999999965443

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=95.46  E-value=0.0056  Score=59.90  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++||||+||++.||++|+.|..
T Consensus       192 ~~~~~~DiwslG~il~el~~g~~pf~  217 (343)
T cd07878         192 HYNQTVDIWSVGCIMAELLKGKALFP  217 (343)
T ss_pred             cCCchhhhHhHHHHHHHHHHCCCCCC
Confidence            35678999999999999999998853

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=95.42  E-value=0.027  Score=56.02  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ...+.++|||||||++.||+||+.|..
T Consensus       223 ~~~~~~~DiwSlG~il~elltG~~Pf~  249 (381)
T cd05626         223 KGYTQLCDWWSVGVILFEMLVGQPPFL  249 (381)
T ss_pred             CCCCCccceeehhhHHHHHHhCCCCCc
Confidence            345678999999999999999999964

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=95.41  E-value=0.0072  Score=59.09  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+|||||++.|+++|+.|..
T Consensus       196 ~~~~~DiwSlGvil~el~~g~~pf~  220 (342)
T cd07854         196 YTKAIDMWAAGCIFAEMLTGKPLFA  220 (342)
T ss_pred             cCchhhHHHHHHHHHHHHhCCCCCC
Confidence            5668999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=95.38  E-value=0.0078  Score=58.36  Aligned_cols=71  Identities=11%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||+||++.|++||+.|.+..     +-..-.+.......      .+..          .....+..+...
T Consensus       176 ~~~~~~~DiwslGvil~elltG~~pf~~~-----~~~~~~~~i~~~~~------~~~~----------~~~~~~~~li~~  234 (324)
T cd05587         176 QPYGKSVDWWAFGVLLYEMLAGQPPFDGE-----DEDELFQSIMEHNV------SYPK----------SLSKEAVSICKG  234 (324)
T ss_pred             CCCCcccchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCCC------CCCC----------CCCHHHHHHHHH
Confidence            34567899999999999999999996431     11111111111110      0000          011235677889


Q ss_pred             cCCCCccCchhH
Q 011044          464 CTVESPIRESTQ  475 (495)
Q Consensus       464 C~~~~p~~Rp~m  475 (495)
                      |...+|.+|++.
T Consensus       235 ~l~~~P~~R~~~  246 (324)
T cd05587         235 LLTKHPAKRLGC  246 (324)
T ss_pred             HhhcCHHHcCCC
Confidence            999999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=95.37  E-value=0.015  Score=56.35  Aligned_cols=76  Identities=11%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|||||||++.|++||+.|....     +...-.+.......      .+..          .....+.++..
T Consensus       169 ~~~~~~~~DiwSlGvil~ell~g~~Pf~~~-----~~~~~~~~~~~~~~------~~p~----------~~~~~~~~li~  227 (323)
T cd05595         169 DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHERLFELILMEEI------RFPR----------TLSPEAKSLLA  227 (323)
T ss_pred             CCCCCchhchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHhcCCC------CCCC----------CCCHHHHHHHH
Confidence            345677899999999999999999995321     11111111111110      0000          01122556777


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|...+|.+||     +..+++
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~~l  249 (323)
T cd05595         228 GLLKKDPKQRLGGGPSDAKEVM  249 (323)
T ss_pred             HHccCCHHHhCCCCCCCHHHHH
Confidence            89999999998     677764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=95.36  E-value=0.0096  Score=57.50  Aligned_cols=74  Identities=11%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.|+++|+.|...    . +-....+......      +.+-..          .-..+.++..
T Consensus       170 ~~~~~~~~DiwslGvil~el~~g~~Pf~~----~-~~~~~~~~~~~~~------~~~~~~----------~~~~~~~li~  228 (316)
T cd05620         170 GLKYTFSVDWWSFGVLLYEMLIGQSPFHG----D-DEDELFESIRVDT------PHYPRW----------ITKESKDILE  228 (316)
T ss_pred             CCCCCcccchhhhHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCC------CCCCCC----------CCHHHHHHHH
Confidence            34566789999999999999999999642    1 2222222211110      111000          1122556778


Q ss_pred             hcCCCCccCchhHHH
Q 011044          463 ECTVESPIRESTQRK  477 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~  477 (495)
                      .|...+|.+||++.+
T Consensus       229 ~~l~~dP~~R~~~~~  243 (316)
T cd05620         229 KLFERDPTRRLGVVG  243 (316)
T ss_pred             HHccCCHHHcCCChH
Confidence            899999999999853

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>PTZ00036 glycogen synthase kinase; Provisional

Probab=95.32  E-value=0.0092  Score=60.58  Aligned_cols=91  Identities=14%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHH--HHhCCC---cceeeeccccc----ccc-c-c-ccchhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVN--DLLSIS---VMEVVDANLLS----WKD-K-H-FMTKEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~--~~~~~~---~~~v~d~~l~~----~~~-~-~-~~~~~~  452 (495)
                      ..+.++|||||||++.||+||+.|..    +........+  ......   ......+....    ... . . ......
T Consensus       247 ~~~~~~DiwSlGvil~elltG~~pf~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~  322 (440)
T PTZ00036        247 NYTTHIDLWSLGCIIAEMILGYPIFS----GQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKG  322 (440)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC----CCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccC
Confidence            35678999999999999999998853    2211111111  111000   00000111000    000 0 0 000001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      ....+.++...|...+|.+||+..|++
T Consensus       323 ~~~~~~~li~~~L~~dP~~R~ta~e~l  349 (440)
T PTZ00036        323 TPDDAINFISQFLKYEPLKRLNPIEAL  349 (440)
T ss_pred             CCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence            123477888999999999999999985

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=95.31  E-value=0.015  Score=56.37  Aligned_cols=76  Identities=9%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|||||++.|++||+.|...     .+.....+.......      .+-.          .....+.++..
T Consensus       170 ~~~~~~~~DiwslG~il~el~tG~~Pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~  228 (325)
T cd05594         170 DNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHEKLFELILMEEI------RFPR----------TLSPEAKSLLS  228 (325)
T ss_pred             cCCCCCccccccccceeeeeccCCCCCCC-----CCHHHHHHHHhcCCC------CCCC----------CCCHHHHHHHH
Confidence            44567789999999999999999999632     122222222211110      0000          01122556778


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|.+.+|.+|+     +..+++
T Consensus       229 ~~L~~dP~~R~~~~~~~~~~il  250 (325)
T cd05594         229 GLLKKDPKQRLGGGPDDAKEIM  250 (325)
T ss_pred             HHhhcCHHHhCCCCCCCHHHHh
Confidence            89999999996     788775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=95.21  E-value=0.012  Score=55.49  Aligned_cols=83  Identities=10%  Similarity=0.095  Sum_probs=47.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|+||+|+++.|+++|+.|....-. ........+......      .....          .....+.++..
T Consensus       168 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~li~  230 (277)
T cd05577         168 GEVYDFSVDWFALGCTLYEMIAGRSPFRQRKE-KVEKEELKRRTLEMA------VEYPD----------KFSPEAKDLCE  230 (277)
T ss_pred             CCCCCchhhhHHHHHHHHHHhhCCCCCCCCcc-cccHHHHHhcccccc------ccCCc----------cCCHHHHHHHH
Confidence            34466789999999999999999999643211 011111111111000      00000          01123567788


Q ss_pred             hcCCCCccCchhHHH-HHHHH
Q 011044          463 ECTVESPIRESTQRK-LLQDS  482 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~-v~~~l  482 (495)
                      .|.+.+|.+||+.++ .+..+
T Consensus       231 ~~l~~~p~~R~~~~~~~~~~l  251 (277)
T cd05577         231 ALLQKDPEKRLGCRGGSADEV  251 (277)
T ss_pred             HHccCChhHccCCCcccHHHH
Confidence            899999999996666 44444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=95.19  E-value=0.0058  Score=59.83  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|+|++|+++.|+++|+.|..
T Consensus       192 ~~~~~~Di~slG~ll~~l~~g~~pf~  217 (343)
T cd07880         192 HYTQTVDIWSVGCIMAEMLTGKPLFK  217 (343)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            35678999999999999999999864

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=95.12  E-value=0.016  Score=53.46  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+|+||+++.|+++|+.|.+..     +-....+.......      .+ ..         .....+.++...
T Consensus       168 ~~~~~~~D~~slG~~~~~l~~g~~p~~~~-----~~~~~~~~~~~~~~------~~-~~---------~~~~~l~~~i~~  226 (250)
T cd05123         168 KGYGKAVDWWSLGVLLYEMLTGKPPFYAE-----DRKEIYEKILKDPL------RF-PE---------FLSPEARDLISG  226 (250)
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHhcCCC------CC-CC---------CCCHHHHHHHHH
Confidence            34567899999999999999999996432     11222322222110      00 00         011236678888


Q ss_pred             cCCCCccCchhHHH
Q 011044          464 CTVESPIRESTQRK  477 (495)
Q Consensus       464 C~~~~p~~Rp~m~~  477 (495)
                      |...+|.+||++.+
T Consensus       227 ~l~~~p~~R~~~~~  240 (250)
T cd05123         227 LLQKDPTKRLGSGG  240 (250)
T ss_pred             HhcCCHhhCCCccc
Confidence            99999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=95.11  E-value=0.036  Score=53.87  Aligned_cols=81  Identities=10%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++|||||||++.||++|+.|...     .+..+......... ...+ .+..        ....+.+..+++ .+.
T Consensus       184 ~~~~~~DiwslG~~l~el~~g~~Pf~~-----~~~~~~~~~i~~~~~~~~~-~~~~--------~~~~~~~~~li~-~ll  248 (331)
T cd05597         184 RYGPECDWWSLGVCMYEMLYGETPFYA-----ESLVETYGKIMNHKEHFQF-PPDV--------TDVSEEAKDLIR-RLI  248 (331)
T ss_pred             CCCCcceeehhhhHHHHHhhCCCCCCC-----CCHHHHHHHHHcCCCcccC-CCcc--------CCCCHHHHHHHH-HHc
Confidence            456689999999999999999999532     22233333222111 0110 0000        001123333443 345


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |....+..||++.+++.
T Consensus       249 ~~~~~r~~r~~~~~~l~  265 (331)
T cd05597         249 CSPETRLGRNGLQDFKD  265 (331)
T ss_pred             cCcccccCCCCHHHHhc
Confidence            77778888999988853

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=95.00  E-value=0.048  Score=53.04  Aligned_cols=82  Identities=11%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.|+++|+.|...     .+..+...........--..+.. .       .....+..+++ .+.|
T Consensus       184 ~~~~~~DvwSlGvil~ell~g~~Pf~~-----~~~~~~~~~i~~~~~~~~~p~~~-~-------~~s~~~~~li~-~ll~  249 (332)
T cd05623         184 KYGPECDWWSLGVCMYEMLYGETPFYA-----ESLVETYGKIMNHKERFQFPAQV-T-------DVSEDAKDLIR-RLIC  249 (332)
T ss_pred             CCCCcCCEEeeHHHHHHHhcCCCCCCC-----CCHHHHHHHHhCCCccccCCCcc-c-------cCCHHHHHHHH-HHcc
Confidence            456789999999999999999999542     23333333322211000000000 0       01122333333 3447


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.+..|+++.|+.+
T Consensus       250 ~~~~r~~r~~~~~~~~  265 (332)
T cd05623         250 SREHRLGQNGIEDFKQ  265 (332)
T ss_pred             ChhhhcCCCCHHHHhC
Confidence            7777777889888853

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=94.97  E-value=0.014  Score=54.84  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|++|+++.|+++|+.|....-    . ..-.+......      ..+          .......+.++..
T Consensus       196 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~-~~~~~~~~~~~------~~~----------~~~~~~~~~~li~  254 (280)
T cd05581         196 EKPAGKSSDLWALGCIIYQMLTGKPPFRGSN----E-YLTFQKILKLE------YSF----------PPNFPPDAKDLIE  254 (280)
T ss_pred             CCCCChhhhHHHHHHHHHHHHhCCCCCCCcc----H-HHHHHHHHhcC------CCC----------CCccCHHHHHHHH
Confidence            3446778999999999999999999854311    1 01111111100      000          0011233778899


Q ss_pred             hcCCCCccCchhH----HHHH
Q 011044          463 ECTVESPIRESTQ----RKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~m----~~v~  479 (495)
                      .|...+|.+||++    .+++
T Consensus       255 ~~l~~~p~~R~~~~~~~~~ll  275 (280)
T cd05581         255 KLLVLDPQDRLGVNEGYDELK  275 (280)
T ss_pred             HHhcCCHhhCCCcccCHHHHh
Confidence            9999999999999    6654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.91  E-value=0.00024  Score=71.75  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=16.9

Q ss_pred             CcEEEccCCcccccCChhHhh---cCCCCCEEEcccccCC
Q 011044          105 LLSIYFNNNTLFGELPPNFCN---QMSNLESLFLKYNMFH  141 (495)
Q Consensus       105 L~~L~l~~n~~~~~~p~~~~~---~l~~L~~L~l~~n~l~  141 (495)
                      +..+.+.+|.+.......+..   ..+.|..|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            555666666554332222221   1344555555555544

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=94.89  E-value=0.028  Score=51.13  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=46.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      +...++|||||||-+.|+.||+-|...-   .+++.-.-+ .+.+.     .|.+-... . +  .    ....+....|
T Consensus       270 kYDiRaDVWSlGITlveLaTg~yPy~~c---~tdFe~ltk-vln~e-----PP~L~~~~-g-F--S----p~F~~fv~~C  332 (391)
T KOG0983|consen  270 KYDIRADVWSLGITLVELATGQYPYKGC---KTDFEVLTK-VLNEE-----PPLLPGHM-G-F--S----PDFQSFVKDC  332 (391)
T ss_pred             ccchhhhhhhhccchhhhhcccCCCCCC---CccHHHHHH-HHhcC-----CCCCCccc-C-c--C----HHHHHHHHHH
Confidence            4456899999999999999999995321   122211111 11110     12221110 0 0  1    1245677899


Q ss_pred             CCCCccCchhHHHHH
Q 011044          465 TVESPIRESTQRKLL  479 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~  479 (495)
                      ...++.+||...+.+
T Consensus       333 L~kd~r~RP~Y~~Ll  347 (391)
T KOG0983|consen  333 LTKDHRKRPKYNKLL  347 (391)
T ss_pred             hhcCcccCcchHHHh
Confidence            999999999998874

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=94.72  E-value=0.024  Score=54.87  Aligned_cols=73  Identities=10%  Similarity=0.150  Sum_probs=45.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|||||++.|++||+.|....     +-...++........   -+.             .......++..
T Consensus       175 ~~~~~~~~DiwslGvil~elltG~~pf~~~-----~~~~~~~~i~~~~~~---~p~-------------~~~~~~~~li~  233 (323)
T cd05615         175 YQPYGKSVDWWAYGVLLYEMLAGQPPFDGE-----DEDELFQSIMEHNVS---YPK-------------SLSKEAVSICK  233 (323)
T ss_pred             CCCCCCccchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCCC---CCc-------------cCCHHHHHHHH
Confidence            344677899999999999999999996532     112222222221110   000             01123567788


Q ss_pred             hcCCCCccCchhHH
Q 011044          463 ECTVESPIRESTQR  476 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~  476 (495)
                      .|...+|.+|++..
T Consensus       234 ~~l~~~p~~R~~~~  247 (323)
T cd05615         234 GLMTKHPSKRLGCG  247 (323)
T ss_pred             HHcccCHhhCCCCC
Confidence            89999999999853

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.56  E-value=0.014  Score=31.22  Aligned_cols=12  Identities=50%  Similarity=0.376  Sum_probs=5.6

Q ss_pred             CCEEeCcCCcCC
Q 011044           81 LQALDLSFNWFY   92 (495)
Q Consensus        81 L~~L~L~~n~l~   92 (495)
                      |++|+|++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PHA03211 serine/threonine kinase US3; Provisional

Probab=94.44  E-value=0.028  Score=57.21  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCC
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      .....+.++|||||||++.|+++|..|.
T Consensus       335 ~~~~~~~~sDvwSlGviL~El~~g~~~l  362 (461)
T PHA03211        335 AGDPYTPSVDIWSAGLVIFEAAVHTASL  362 (461)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHcCCCc
Confidence            3445677899999999999999987653

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=94.36  E-value=0.052  Score=53.73  Aligned_cols=26  Identities=15%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|+||+||++.||++|+.|..
T Consensus       223 ~~~~~~DiwSlGvilyell~G~~Pf~  248 (371)
T cd05622         223 YYGRECDWWSVGVFLYEMLVGDTPFY  248 (371)
T ss_pred             cCCCccceeehhHHHHHHHhCCCCCC
Confidence            35678999999999999999999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=94.36  E-value=0.044  Score=53.54  Aligned_cols=75  Identities=12%  Similarity=0.049  Sum_probs=45.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+|||||++.||+||+.|...    .... .-.+....... . ....           .   ...+..+...
T Consensus       203 ~~~~~~~DiwSlGvil~ell~G~~Pf~~----~~~~-~~~~~i~~~~~-~-~p~~-----------~---~~~~~~li~~  261 (340)
T PTZ00426        203 VGHGKAADWWTLGIFIYEILVGCPPFYA----NEPL-LIYQKILEGII-Y-FPKF-----------L---DNNCKHLMKK  261 (340)
T ss_pred             CCCCccccccchhhHHHHHhcCCCCCCC----CCHH-HHHHHHhcCCC-C-CCCC-----------C---CHHHHHHHHH
Confidence            3456789999999999999999999642    2111 11111111110 0 0000           0   1124567789


Q ss_pred             cCCCCccCch-----hHHHHH
Q 011044          464 CTVESPIRES-----TQRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp-----~m~~v~  479 (495)
                      |...+|.+|+     +..++.
T Consensus       262 ~l~~dp~~R~~~~~~~~~~~~  282 (340)
T PTZ00426        262 LLSHDLTKRYGNLKKGAQNVK  282 (340)
T ss_pred             HcccCHHHcCCCCCCCHHHHH
Confidence            9999999995     677764

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=94.34  E-value=0.016  Score=53.28  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=43.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||+|+++.|+++|+.|.+.....               ........+-.          .....+.++...
T Consensus       157 ~~~~~~~DvwslG~il~el~~g~~~~~~~~~~---------------~~~~~~~~~~~----------~~~~~~~~li~~  211 (237)
T cd05576         157 SEETEACDWWSLGAILFELLTGKTLVECHPSG---------------INTHTTLNIPE----------WVSEEARSLLQQ  211 (237)
T ss_pred             CCCCchhhHHHHHHHHHHHHHCcchhhcCchh---------------cccccccCCcc----------cCCHHHHHHHHH
Confidence            34567899999999999999998764321100               00000000100          011235567888


Q ss_pred             cCCCCccCchhHHHH
Q 011044          464 CTVESPIRESTQRKL  478 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v  478 (495)
                      |...+|.+||+++++
T Consensus       212 ~l~~dp~~R~~~~~~  226 (237)
T cd05576         212 LLQFNPTERLGAGVA  226 (237)
T ss_pred             HccCCHHHhcCCCcc
Confidence            999999999998655

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PHA03210 serine/threonine kinase US3; Provisional

Probab=94.33  E-value=0.023  Score=58.70  Aligned_cols=26  Identities=12%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCC
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKP  408 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p  408 (495)
                      ....+.++|||||||+++||++|+.+
T Consensus       342 ~~~~~~~~DiwSlGvil~ell~~~~~  367 (501)
T PHA03210        342 GDGYCEITDIWSCGLILLDMLSHDFC  367 (501)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            34567789999999999999998753

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=94.33  E-value=0.039  Score=54.73  Aligned_cols=28  Identities=14%  Similarity=0.291  Sum_probs=24.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.||+||+.|..
T Consensus       218 ~~~~~~~~DiwSlGvilyell~G~~Pf~  245 (376)
T cd05598         218 RTGYTQLCDWWSVGVILYEMLVGQPPFL  245 (376)
T ss_pred             CCCCCcceeeeeccceeeehhhCCCCCC
Confidence            3445678999999999999999999964

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=94.27  E-value=0.067  Score=52.96  Aligned_cols=26  Identities=15%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|+||+||++.||+||+.|..
T Consensus       223 ~~~~~~DiwSlG~ilyell~G~~Pf~  248 (370)
T cd05621         223 YYGRECDWWSVGVFLFEMLVGDTPFY  248 (370)
T ss_pred             CCCcccCEEeehHHHHHHHhCCCCCC
Confidence            35678999999999999999999953

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.23  E-value=0.044  Score=54.78  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH-HHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF-VFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~-~~~~~~  462 (495)
                      ..-..|.||||+|||.+||+-|..|.-.    +-++......+.. +..++-.+.              .+.. +-+...
T Consensus       444 k~YG~KVDIWSLGIMaIEMveGEPPYln----E~PlrAlyLIa~n-g~P~lk~~~--------------klS~~~kdFL~  504 (550)
T KOG0578|consen  444 KPYGPKVDIWSLGIMAIEMVEGEPPYLN----ENPLRALYLIATN-GTPKLKNPE--------------KLSPELKDFLD  504 (550)
T ss_pred             cccCccccchhhhhHHHHHhcCCCCccC----CChHHHHHHHhhc-CCCCcCCcc--------------ccCHHHHHHHH
Confidence            3345789999999999999999999532    3343332221111 111221221              1222 335678


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|..-++.+||+..|.++
T Consensus       505 ~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  505 RCLVVDVEQRASAKELLE  522 (550)
T ss_pred             HHhhcchhcCCCHHHHhc
Confidence            899999999999999853

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.10  E-value=0.03  Score=57.45  Aligned_cols=74  Identities=22%  Similarity=0.398  Sum_probs=45.9

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH-HHHHHhhcCC
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF-VFNLAMECTV  466 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~-~~~~~~~C~~  466 (495)
                      ..+|+|||||-..||.|||.|.-+.-.   +  +-+  +++-+.- -+.|.+           ++++.. .-...+.|-.
T Consensus       757 ~aADIWS~GCT~vEMATGrPPF~Elgs---p--qAA--MFkVGmy-KvHP~i-----------Peelsaeak~FilrcFe  817 (1226)
T KOG4279|consen  757 KAADIWSFGCTMVEMATGRPPFVELGS---P--QAA--MFKVGMY-KVHPPI-----------PEELSAEAKNFILRCFE  817 (1226)
T ss_pred             chhhhhhccceeEeeccCCCCeeecCC---h--hHh--hhhhcce-ecCCCC-----------cHHHHHHHHHHHHHHcC
Confidence            458999999999999999999654211   1  000  1111100 012222           122222 3356789999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||+..+.++
T Consensus       818 pd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  818 PDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CCcccCccHHHhcc
Confidence            99999999999854

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=94.10  E-value=0.029  Score=53.35  Aligned_cols=37  Identities=16%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             hhhhhhhhcCCCccccCCCcceeehhhhhhcccCCCC
Q 011044          372 LEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKP  408 (495)
Q Consensus       372 L~~L~l~~~~~~~~~~~~~dvysfgilllE~~tgk~p  408 (495)
                      -+....+|--.+--.++++||||+||+|.|++||..-
T Consensus       272 TRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~L  308 (415)
T KOG0671|consen  272 TRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETL  308 (415)
T ss_pred             ccccCCchheeccCcCCccCceeeeeEEEEeecccee
Confidence            3444555554555578899999999999999999763

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=94.09  E-value=0.06  Score=53.07  Aligned_cols=29  Identities=14%  Similarity=0.296  Sum_probs=24.6

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .....+.++|+|||||++.||++|+.|..
T Consensus       212 ~~~~~~~~~DiwSlG~il~el~~G~~Pf~  240 (364)
T cd05599         212 LQTGYNKECDWWSLGVIMYEMLVGYPPFC  240 (364)
T ss_pred             cCCCCCCeeeeecchhHHHHhhcCCCCCC
Confidence            34456778999999999999999999964

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=94.05  E-value=0.05  Score=51.60  Aligned_cols=71  Identities=10%  Similarity=0.177  Sum_probs=43.7

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|||+||+++.|++||+.|.+.. ........+.+......      +..          .......+..+...|.
T Consensus       185 ~~~~~Dv~slG~~l~~ll~g~~p~~~~-~~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~ll~~~l  247 (290)
T cd05613         185 HDKAVDWWSMGVLMYELLTGASPFTVD-GEKNSQAEISRRILKSE------PPY----------PQEMSALAKDIIQRLL  247 (290)
T ss_pred             CCccccHHHHHHHHHHHhcCCCCCCcC-CccccHHHHHHHhhccC------CCC----------CccCCHHHHHHHHHHh
Confidence            456799999999999999999996421 11123333333222211      000          0011223667889999


Q ss_pred             CCCccCch
Q 011044          466 VESPIRES  473 (495)
Q Consensus       466 ~~~p~~Rp  473 (495)
                      ..+|.+||
T Consensus       248 ~~~p~~R~  255 (290)
T cd05613         248 MKDPKKRL  255 (290)
T ss_pred             cCCHHHhc
Confidence            99999997

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=94.02  E-value=0.061  Score=50.22  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|+||||+++.|+++|+.|..
T Consensus       183 ~~~~~~~~Di~slG~il~~l~~g~~p~~  210 (264)
T cd06653         183 GEGYGRKADVWSVACTVVEMLTEKPPWA  210 (264)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence            3456778999999999999999999954

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=94.02  E-value=0.03  Score=54.86  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCC
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      ..+.++||||||+++.|+++|+.|.
T Consensus       194 ~~~~~~DvwslG~il~el~~g~~pf  218 (345)
T cd07877         194 HYNQTVDIWSVGCIMAELLTGRTLF  218 (345)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCC
Confidence            3566899999999999999999885

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=93.87  E-value=0.065  Score=49.07  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      -+.|+||||.||++.||..=+.|    |.|. ++....++.-....     +.+         ..+..-..+.+++-.|.
T Consensus       205 Y~~kSDiWslGCllyEMcaL~~P----F~g~-n~~~L~~KI~qgd~-----~~~---------p~~~YS~~l~~li~~ci  265 (375)
T KOG0591|consen  205 YNFKSDIWSLGCLLYEMCALQSP----FYGD-NLLSLCKKIEQGDY-----PPL---------PDEHYSTDLRELINMCI  265 (375)
T ss_pred             CCcchhHHHHHHHHHHHHhcCCC----cccc-cHHHHHHHHHcCCC-----CCC---------cHHHhhhHHHHHHHHHc
Confidence            45689999999999999988888    4443 44443332222111     111         22334455888999999


Q ss_pred             CCCccCchhHHHHHHH
Q 011044          466 VESPIRESTQRKLLQD  481 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~~  481 (495)
                      +.+|..||+.-..|+.
T Consensus       266 ~vd~~~RP~t~~~v~d  281 (375)
T KOG0591|consen  266 AVDPEQRPDTVPYVQD  281 (375)
T ss_pred             cCCcccCCCcchHHHH
Confidence            9999999985444433

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=93.83  E-value=0.062  Score=52.12  Aligned_cols=70  Identities=19%  Similarity=0.338  Sum_probs=46.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceee----eccccccccccccchhhHHHHHHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVV----DANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~----d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      -..|+|+||+||...||.+|..|.-....              -+.+-++    -|.+..          ++-..+-+..
T Consensus       188 Y~~KADIWSLGITaiEla~GePP~s~~hP--------------mrvlflIpk~~PP~L~~----------~~S~~~kEFV  243 (467)
T KOG0201|consen  188 YDTKADIWSLGITAIELAKGEPPHSKLHP--------------MRVLFLIPKSAPPRLDG----------DFSPPFKEFV  243 (467)
T ss_pred             ccchhhhhhhhHHHHHHhcCCCCCcccCc--------------ceEEEeccCCCCCcccc----------ccCHHHHHHH
Confidence            46789999999999999999999643322              1111111    122211          1122245567


Q ss_pred             hhcCCCCccCchhHHHHH
Q 011044          462 MECTVESPIRESTQRKLL  479 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~  479 (495)
                      -.|...+|..||+..+.+
T Consensus       244 ~~CL~k~P~~RpsA~~LL  261 (467)
T KOG0201|consen  244 EACLDKNPEFRPSAKELL  261 (467)
T ss_pred             HHHhhcCcccCcCHHHHh
Confidence            789999999999999985

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=93.53  E-value=0.11  Score=54.80  Aligned_cols=82  Identities=12%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ..-+.+|+|+|..||+|..++-..-|.+.    +             +...|++.+..=      .....+-..+-.+..
T Consensus       232 g~pI~eKsDIWALGclLYkLCy~t~PFe~----s-------------g~laIlng~Y~~------P~~p~ys~~l~~LI~  288 (738)
T KOG1989|consen  232 GLPIGEKSDIWALGCLLYKLCYFTTPFEE----S-------------GKLAILNGNYSF------PPFPNYSDRLKDLIR  288 (738)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHhCCCcCc----C-------------cceeEEeccccC------CCCccHHHHHHHHHH
Confidence            34578899999999999999988888442    1             123444444320      011123445777899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+++|.+||+.-+|+..+-+++.
T Consensus       289 ~mL~~nP~~RPnI~Qv~~~~~~l~~  313 (738)
T KOG1989|consen  289 TMLQPNPDERPNIYQVLEEIFELAN  313 (738)
T ss_pred             HHhccCcccCCCHHHHHHHHHHHhc
Confidence            9999999999999999998887764

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=93.49  E-value=0.091  Score=51.72  Aligned_cols=28  Identities=14%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|+|||||++.||+||+.|..
T Consensus       210 ~~~~~~~~DiwSlGvilyel~tG~~Pf~  237 (360)
T cd05627         210 QTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (360)
T ss_pred             CCCCCCcceeccccceeeecccCCCCCC
Confidence            3445678999999999999999999954

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=93.41  E-value=0.17  Score=49.18  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|+||||+++.||+||+.|..
T Consensus       184 ~~~~~~DiwSlGvil~ell~g~~Pf~  209 (331)
T cd05624         184 KYGPECDWWSLGVCMYEMLYGETPFY  209 (331)
T ss_pred             CCCCcccEEeeehhhhhhhhCCCCcc
Confidence            45678999999999999999999964

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=93.24  E-value=0.085  Score=50.08  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=41.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||||+++.|+++|+.|....    .. ..-.+.......      .+...          .-..+.++...
T Consensus       173 ~~~~~~~Di~slG~il~~l~~g~~p~~~~----~~-~~~~~~~~~~~~------~~~~~----------~~~~l~~li~~  231 (290)
T cd05580         173 KGYGKAVDWWALGILIYEMLAGYPPFFDD----NP-IQIYEKILEGKV------RFPSF----------FSPDAKDLIRN  231 (290)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCCCC----CH-HHHHHHHhcCCc------cCCcc----------CCHHHHHHHHH
Confidence            34567899999999999999999995421    11 111111111110      00000          01235577888


Q ss_pred             cCCCCccCch
Q 011044          464 CTVESPIRES  473 (495)
Q Consensus       464 C~~~~p~~Rp  473 (495)
                      |...+|.+||
T Consensus       232 ~l~~~p~~R~  241 (290)
T cd05580         232 LLQVDLTKRL  241 (290)
T ss_pred             HccCCHHHcc
Confidence            9999999998

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=93.20  E-value=0.14  Score=50.72  Aligned_cols=29  Identities=14%  Similarity=0.244  Sum_probs=24.4

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .....+.++|+|||||++.|++||+.|..
T Consensus       221 ~~~~~~~~~DiwSlGvil~elltG~~Pf~  249 (377)
T cd05629         221 LQQGYGQECDWWSLGAIMFECLIGWPPFC  249 (377)
T ss_pred             ccCCCCCceeeEecchhhhhhhcCCCCCC
Confidence            34456778999999999999999999953

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.99  E-value=0.11  Score=51.12  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=48.1

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      ..++||||+||+|..|++|+-|.+.     .+.+.-.+.......   .=|....            -.....+...|..
T Consensus       201 g~~aDvWS~GViLy~ml~G~~PF~d-----~~~~~l~~ki~~~~~---~~p~~~~------------S~~~~~Li~~mL~  260 (370)
T KOG0583|consen  201 GKAADVWSLGVILYVLLCGRLPFDD-----SNVPNLYRKIRKGEF---KIPSYLL------------SPEARSLIEKMLV  260 (370)
T ss_pred             CchhhhhhhHHHHHHHHhCCCCCCC-----ccHHHHHHHHhcCCc---cCCCCcC------------CHHHHHHHHHHcC
Confidence            4579999999999999999999764     233333332222110   0011100            1225678889999


Q ss_pred             CCccCchhHHHHH
Q 011044          467 ESPIRESTQRKLL  479 (495)
Q Consensus       467 ~~p~~Rp~m~~v~  479 (495)
                      .+|..|+++.++.
T Consensus       261 ~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  261 PDPSTRITLLEIL  273 (370)
T ss_pred             CCcccCCCHHHHh
Confidence            9999999999996

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=92.92  E-value=0.072  Score=58.66  Aligned_cols=23  Identities=35%  Similarity=0.666  Sum_probs=21.3

Q ss_pred             CCcceeehhhhhhcccCCCCCcc
Q 011044          389 NGDIYNFGIMIMETFTAKKPTDE  411 (495)
Q Consensus       389 ~~dvysfgilllE~~tgk~p~~~  411 (495)
                      ..||||.||+++||.|||+|+-+
T Consensus      1421 A~DiWslGCVVlEM~tGkrPW~~ 1443 (1509)
T KOG4645|consen 1421 AADIWSLGCVVLEMATGKRPWAE 1443 (1509)
T ss_pred             chhhhcccceEEEeecCCCchhh
Confidence            57999999999999999999865

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=92.83  E-value=0.12  Score=51.25  Aligned_cols=28  Identities=14%  Similarity=0.291  Sum_probs=23.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++||||+||++.||+||+.|..
T Consensus       222 ~~~~~~~~DiwSlGvil~elltG~~Pf~  249 (382)
T cd05625         222 RTGYTQLCDWWSVGVILYEMLVGQPPFL  249 (382)
T ss_pred             CCCCCCeeeEEechHHHHHHHhCCCCCC
Confidence            3345678999999999999999999964

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=92.65  E-value=0.07  Score=48.48  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=49.9

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCC
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE  467 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~  467 (495)
                      ..+|.|||.|++-|+.|...|..+.-    +..-=++-++ ++..--+.|.+              ..-+.++.-.|..+
T Consensus       368 raadmwsfaillwel~trevpfadls----pmecgmkial-eglrv~ippgi--------------s~hm~klm~icmne  428 (448)
T KOG0195|consen  368 RAADMWSFAILLWELNTREVPFADLS----PMECGMKIAL-EGLRVHIPPGI--------------SRHMNKLMNICMNE  428 (448)
T ss_pred             hhhhHHHHHHHHHHhhccccccccCC----chhhhhhhhh-ccccccCCCCc--------------cHHHHHHHHHHhcC
Confidence            46899999999999999988843211    1000001111 11111112222              11266778889999


Q ss_pred             CccCchhHHHHHHHHHHHH
Q 011044          468 SPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       468 ~p~~Rp~m~~v~~~l~~i~  486 (495)
                      +|.+||.+..||-.|+++.
T Consensus       429 dpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  429 DPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             CCCcCCCcceehhhHHHhc
Confidence            9999999999998888653

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=92.42  E-value=0.035  Score=56.19  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeeccccccccccccchhhHHHHHHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ..+..|||+||+=+|||+|+.-|..+    =.+-.+.-|+..++.    ..-|-||.                  +-++.
T Consensus       220 YnE~VDVYaFGMCmLEMvT~eYPYsE----C~n~AQIYKKV~SGiKP~sl~kV~dPe------------------vr~fI  277 (632)
T KOG0584|consen  220 YNELVDVYAFGMCMLEMVTSEYPYSE----CTNPAQIYKKVTSGIKPAALSKVKDPE------------------VREFI  277 (632)
T ss_pred             cchhhhhhhhhHHHHHHHhccCChhh----hCCHHHHHHHHHcCCCHHHhhccCCHH------------------HHHHH
Confidence            34678999999999999999999643    223334444444332    22333332                  55678


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|... ..+||+..|.++
T Consensus       278 ekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  278 EKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             HHHhcC-chhccCHHHHhh
Confidence            889988 889999998753

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=91.94  E-value=0.22  Score=51.12  Aligned_cols=33  Identities=21%  Similarity=0.477  Sum_probs=25.5

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND  425 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~  425 (495)
                      .++||||+||+|.-++||+-|.|     +.++.....+
T Consensus       191 ~~sDVWSCGVILfALLtG~LPFd-----DdNir~LLlK  223 (786)
T KOG0588|consen  191 RPSDVWSCGVILFALLTGKLPFD-----DDNIRVLLLK  223 (786)
T ss_pred             CccccchhHHHHHHHHhCCCCCC-----CccHHHHHHH
Confidence            36899999999999999999965     3355554443

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=90.78  E-value=0.096  Score=47.62  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      -..++||||+||-+.|+.||+-|.+.- .   ++-+-+.....+      |+.++....    ...+.-..+....-.|+
T Consensus       246 yDiRSDvWSLGITL~EvAtG~fPyr~w-~---svfeql~~Vv~g------dpp~l~~~~----~~~~~s~~~~~fintCl  311 (361)
T KOG1006|consen  246 YDIRSDVWSLGITLYEVATGNFPYRKW-D---SVFEQLCQVVIG------DPPILLFDK----ECVHYSFSMVRFINTCL  311 (361)
T ss_pred             cchhhhhhhhcceEeeeecCCCCcchH-H---HHHHHHHHHHcC------CCCeecCcc----cccccCHHHHHHHHHHh
Confidence            346799999999999999999997531 1   111222222211      222221100    00111233566677899


Q ss_pred             CCCccCchhHHHH
Q 011044          466 VESPIRESTQRKL  478 (495)
Q Consensus       466 ~~~p~~Rp~m~~v  478 (495)
                      -.+..+||...+.
T Consensus       312 ~Kd~~~Rpky~~L  324 (361)
T KOG1006|consen  312 IKDRSDRPKYDDL  324 (361)
T ss_pred             hcccccCcchhhh
Confidence            9999999999886

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=90.71  E-value=0.11  Score=45.86  Aligned_cols=25  Identities=12%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQD  481 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~  481 (495)
                      +.++...|...+|.+||++.++++.
T Consensus       190 ~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         190 LKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             HHHHHHHHhhCCcccCcCHHHHhhC
Confidence            6677888999999999999998753

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=90.58  E-value=0.13  Score=52.44  Aligned_cols=83  Identities=16%  Similarity=0.054  Sum_probs=47.2

Q ss_pred             CCCcCCEEeCcCCccccc--CCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCccccCCCcceeeh
Q 011044          319 NLRKLEWLMLSHNKLVGV--VPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFG  396 (495)
Q Consensus       319 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~dvysfg  396 (495)
                      .+.-|..+.|-||.++-+  +... ..-..++.+|+..-...+.-.-.   .. +-+....+|--.+....++.|+||+|
T Consensus       301 ~L~~L~~l~IIHcDLKPENILL~~-~~r~~vKVIDFGSSc~~~q~vyt---Yi-QSRfYRAPEVILGlpY~~~IDmWSLG  375 (586)
T KOG0667|consen  301 ALLFLHELGIIHCDLKPENILLKD-PKRSRIKVIDFGSSCFESQRVYT---YI-QSRFYRAPEVILGLPYDTAIDMWSLG  375 (586)
T ss_pred             HHHHHHhCCeeeccCChhheeecc-CCcCceeEEecccccccCCccee---ee-eccccccchhhccCCCCCccceeehh
Confidence            445566666777765421  1001 11235666666443222111000   00 12345556666777888999999999


Q ss_pred             hhhhhcccCC
Q 011044          397 IMIMETFTAK  406 (495)
Q Consensus       397 illlE~~tgk  406 (495)
                      |++-||+||.
T Consensus       376 CIlAEL~tG~  385 (586)
T KOG0667|consen  376 CILAELFTGE  385 (586)
T ss_pred             hhHHhHhcCc
Confidence            9999999994

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.54  E-value=0.17  Score=25.11  Aligned_cols=12  Identities=50%  Similarity=0.639  Sum_probs=4.4

Q ss_pred             CCCEEeCcCCcC
Q 011044           80 SLQALDLSFNWF   91 (495)
Q Consensus        80 ~L~~L~L~~n~l   91 (495)
                      +|++|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344455544444

...

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=90.41  E-value=0.26  Score=50.28  Aligned_cols=88  Identities=17%  Similarity=0.316  Sum_probs=59.8

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |--...+.++.+|||-|||-.-|+++ |.+|...           |+..      +|+- .+ ++.+ .-.-.+.|...+
T Consensus       562 ESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqg-----------vkNs------DVI~-~i-EnGe-RlP~P~nCPp~L  621 (974)
T KOG4257|consen  562 ESINFRRFTTASDVWMFGVCMWEILSLGVKPFQG-----------VKNS------DVIG-HI-ENGE-RLPCPPNCPPAL  621 (974)
T ss_pred             cccchhcccchhhHHHHHHHHHHHHHhcCCcccc-----------cccc------ceEE-Ee-cCCC-CCCCCCCCChHH
Confidence            33345678889999999999999885 7888432           2110      1100 00 0000 011234688888


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..+--.|.+-.|.+||.+.++...|.+|.
T Consensus       622 YslmskcWayeP~kRPrftei~~~lsdv~  650 (974)
T KOG4257|consen  622 YSLMSKCWAYEPSKRPRFTEIKAILSDVL  650 (974)
T ss_pred             HHHHHHHhccCcccCCcHHHHHHHHHHHH
Confidence            99999999999999999999988887764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.46  E-value=0.037  Score=48.12  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=15.3

Q ss_pred             CCCCeeecccc-cccccCCccccCCCcCCEEeCc
Q 011044          297 TKLTDLYLDQN-KLQGKIPHEIGNLRKLEWLMLS  329 (495)
Q Consensus       297 ~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~  329 (495)
                      ++|+.|++++| +|++.....+..+++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            45555555544 2333333344445555555443

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.86  E-value=0.51  Score=48.30  Aligned_cols=74  Identities=22%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH-HhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND-LLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~-~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      ..++|||||||-|.||.-+..|-.+     ++-.+.+-+ +-++.      |.++... .   |.    ...-.+...|.
T Consensus       213 DykaDiWSlGITLIEMAqiEPPHhe-----lnpMRVllKiaKSeP------PTLlqPS-~---Ws----~~F~DfLk~cL  273 (1187)
T KOG0579|consen  213 DYKADIWSLGITLIEMAQIEPPHHE-----LNPMRVLLKIAKSEP------PTLLQPS-H---WS----RSFSDFLKRCL  273 (1187)
T ss_pred             hhhhhHHhhhhHHHHHhccCCCccc-----cchHHHHHHHhhcCC------CcccCcc-h---hh----hHHHHHHHHHH
Confidence            3579999999999999998888432     222222211 11111      2222110 1   11    12345677899


Q ss_pred             CCCccCchhHHHHH
Q 011044          466 VESPIRESTQRKLL  479 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~  479 (495)
                      ..+|..||+..+++
T Consensus       274 ~Knp~~Rp~aaqll  287 (1187)
T KOG0579|consen  274 VKNPRNRPPAAQLL  287 (1187)
T ss_pred             hcCCccCCCHHHHh
Confidence            99999999999984

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.81  E-value=0.12  Score=45.08  Aligned_cols=83  Identities=19%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      .|+.++-+++.|....-..+.+++.++.|.+.+|.--+...                       -..+....++|+.|++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-----------------------L~~l~~~~~~L~~L~l  158 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-----------------------LERLGGLAPSLQDLDL  158 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-----------------------HHHhcccccchheeec
Confidence            45556666666555554555555555555555553211100                       0011112456666666


Q ss_pred             cccc-CCccCCcccCCCCCCCEEEccc
Q 011044          136 KYNM-FHGKIPSTLSSCKQLRELSLSS  161 (495)
Q Consensus       136 ~~n~-l~~~~~~~l~~l~~L~~L~l~~  161 (495)
                      ++|. |+..--..+..+++|+.|.+.+
T Consensus       159 sgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  159 SGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            6663 4444444455666666666553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.56  E-value=0.014  Score=51.69  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=33.9

Q ss_pred             CCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC
Q 011044          127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      +..|..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..++++++++-.|.+.
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            344455555555444 44555555555555555555544 55666666666666666666543

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=86.97  E-value=0.43  Score=48.44  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             cCCCcceeehhhhhhcccCCCCCc
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      +-.+||||.||++--++.|+.|.+
T Consensus       196 sfEvDiWSlGcvmYtLL~G~PPFe  219 (592)
T KOG0575|consen  196 SFEVDIWSLGCVMYTLLVGRPPFE  219 (592)
T ss_pred             CCchhhhhhhhHHHhhhhCCCCcc
Confidence            446899999999999999999954

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=86.69  E-value=0.73  Score=45.61  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      -..|+|+||+||.+-||.+=|.+..     +-+....+.+..+..    .+|-           .......+-.+--.|+
T Consensus       183 Yn~KSDiWsLGC~~yEm~~lk~aF~-----a~~m~~Li~ki~~~~----~~Pl-----------p~~ys~el~~lv~~~l  242 (426)
T KOG0589|consen  183 YNEKSDIWSLGCCLYEMCTLKPAFK-----ASNMSELILKINRGL----YSPL-----------PSMYSSELRSLVKSML  242 (426)
T ss_pred             CCccCcchhhcchHHHHHhcccccC-----ccchHHHHHHHhhcc----CCCC-----------CccccHHHHHHHHHHh
Confidence            4568999999999999999887743     234444444444322    1110           0011223556778899


Q ss_pred             CCCccCchhHHHHHHH
Q 011044          466 VESPIRESTQRKLLQD  481 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~~  481 (495)
                      ..+|..||+..+++.+
T Consensus       243 ~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  243 RKNPEHRPSALELLRR  258 (426)
T ss_pred             hcCCccCCCHHHHhhC
Confidence            9999999999999876

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=85.87  E-value=0.77  Score=44.55  Aligned_cols=76  Identities=13%  Similarity=0.234  Sum_probs=42.8

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHH-HHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVN-DLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~-~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      .+.|+||.||+|.-++||-.|..+... ..++-+-+. ..+...  -..+.++           .++   ...+.-.=..
T Consensus       360 ~kVDiWSlGcvLfvcLsG~pPFS~~~~-~~sl~eQI~~G~y~f~--p~~w~~I-----------see---a~dlI~~mL~  422 (475)
T KOG0615|consen  360 SKVDIWSLGCVLFVCLSGYPPFSEEYT-DPSLKEQILKGRYAFG--PLQWDRI-----------SEE---ALDLINWMLV  422 (475)
T ss_pred             chheeeeccceEEEEeccCCCcccccC-CccHHHHHhcCccccc--Chhhhhh-----------hHH---HHHHHHHhhE
Confidence            477999999999999999999544332 222222111 111110  0001111           111   3333444456


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      -+|..||+..|+++
T Consensus       423 VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  423 VDPENRPSADEALN  436 (475)
T ss_pred             eCcccCcCHHHHhc
Confidence            79999999999963

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=85.80  E-value=1.1  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.1

Q ss_pred             cCCCcceeehhhhhhcccCCC
Q 011044          387 STNGDIYNFGIMIMETFTAKK  407 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~  407 (495)
                      +.+.|+||+||+++||+++..
T Consensus       410 ~~~~DvwSlGvil~em~~~~l  430 (507)
T PLN03224        410 PDLFDSYTAGVLLMQMCVPEL  430 (507)
T ss_pred             CCccchhhHHHHHHHHHhCCC
Confidence            345799999999999999874

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=85.67  E-value=0.64  Score=51.25  Aligned_cols=74  Identities=22%  Similarity=0.333  Sum_probs=42.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc---ceeeeccccccccccccchhhHHHHHHHHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV---MEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~---~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      +...|.|.||.||+++||+-   |    |+-+|.-..-+...-...+   .++.|++.               ..=.++.
T Consensus       794 ~Yn~KiDmYSLGIVlFEM~y---P----F~TsMERa~iL~~LR~g~iP~~~~f~~~~~---------------~~e~slI  851 (1351)
T KOG1035|consen  794 KYNSKIDMYSLGIVLFEMLY---P----FGTSMERASILTNLRKGSIPEPADFFDPEH---------------PEEASLI  851 (1351)
T ss_pred             cccchhhhHHHHHHHHHHhc---c----CCchHHHHHHHHhcccCCCCCCcccccccc---------------hHHHHHH
Confidence            56789999999999999994   3    2223332222222222221   12223222               1122444


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+=++.+|.+||+..|++.
T Consensus       852 ~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  852 RWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HHHhcCCCccCCCHHHHhh
Confidence            5557789999999999853

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=83.04  E-value=0.55  Score=43.73  Aligned_cols=90  Identities=17%  Similarity=0.248  Sum_probs=48.7

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHH--HHHHHHhCC---Ccceeeecc-ccccc----cccccchh----
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR--RWVNDLLSI---SVMEVVDAN-LLSWK----DKHFMTKE----  451 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~--~wv~~~~~~---~~~~v~d~~-l~~~~----~~~~~~~~----  451 (495)
                      .....|||+.||+.-||+||..-    |.|..++.  -.+++.+.+   +...++..+ .....    ..+....+    
T Consensus       179 YG~pVDiWAiGCv~aEl~~G~pL----~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p  254 (396)
T KOG0593|consen  179 YGKPVDIWAIGCVFAELLTGEPL----WPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYP  254 (396)
T ss_pred             CCCcccchhhhHHHHHHhcCCcC----CCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcc
Confidence            34568999999999999999764    33433322  222322211   111111111 10000    00000001    


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      .--...+.+.-.|..-+|.+|++..|.+
T Consensus       255 ~~s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  255 KISNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             cchHHHHHHHHHHhcCCccccccHHHHh
Confidence            1112367889999999999999999984

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.83  E-value=1.2  Score=24.67  Aligned_cols=14  Identities=43%  Similarity=0.472  Sum_probs=7.3

Q ss_pred             CCCCEEeCcCCcCC
Q 011044           79 SSLQALDLSFNWFY   92 (495)
Q Consensus        79 ~~L~~L~L~~n~l~   92 (495)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.83  E-value=1.2  Score=24.67  Aligned_cols=14  Identities=43%  Similarity=0.472  Sum_probs=7.3

Q ss_pred             CCCCEEeCcCCcCC
Q 011044           79 SSLQALDLSFNWFY   92 (495)
Q Consensus        79 ~~L~~L~L~~n~l~   92 (495)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555554

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=81.54  E-value=0.53  Score=42.24  Aligned_cols=27  Identities=19%  Similarity=0.398  Sum_probs=23.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCcc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDE  411 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~  411 (495)
                      ..+.++|+|+||+++.|+++|+.|.+.
T Consensus       176 ~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      176 GYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            445589999999999999999999643

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=81.53  E-value=1  Score=44.67  Aligned_cols=108  Identities=13%  Similarity=0.030  Sum_probs=61.4

Q ss_pred             hhhhhhhcCCCccccCCCcceeehhhhhhcccCCCCCccccC-----CCCCHHHHHHHH--h------CCC-cceeeecc
Q 011044          373 EELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFN-----GEMTLRRWVNDL--L------SIS-VMEVVDAN  438 (495)
Q Consensus       373 ~~L~l~~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~-----~~~~l~~wv~~~--~------~~~-~~~v~d~~  438 (495)
                      +++...|.-.+...++.+|+|||.|+.+|+.||.--.+..-+     ++..|...++-.  +      .++ -.++++.+
T Consensus       415 RQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~  494 (590)
T KOG1290|consen  415 RQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRR  494 (590)
T ss_pred             hhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccc
Confidence            445555666677778889999999999999999765443211     122333333211  1      111 11222221


Q ss_pred             ----------cccccc---ccccchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          439 ----------LLSWKD---KHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       439 ----------l~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                                ...-.+   ..+.+.++++.++....+-=.+..|++||+.++.++
T Consensus       495 G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~  549 (590)
T KOG1290|consen  495 GELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLK  549 (590)
T ss_pred             cceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhc
Confidence                      111000   111234466667777666667789999999998763

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.41  E-value=0.58  Score=25.41  Aligned_cols=10  Identities=30%  Similarity=0.441  Sum_probs=2.9

Q ss_pred             CcEEEccCCc
Q 011044          105 LLSIYFNNNT  114 (495)
Q Consensus       105 L~~L~l~~n~  114 (495)
                      |++|++++|.
T Consensus         4 L~~L~l~~n~   13 (24)
T PF13516_consen    4 LETLDLSNNQ   13 (24)
T ss_dssp             -SEEE-TSSB
T ss_pred             CCEEEccCCc
Confidence            3333333333

...

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=81.36  E-value=1.2  Score=40.18  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=48.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      .-....|+|+.||+..|.+.|..|....-.+     .-.++.   ...++.+|..+..             ....+...|
T Consensus       198 ~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~-----etYkrI---~k~~~~~p~~is~-------------~a~dlI~~l  256 (281)
T KOG0580|consen  198 GHDKFVDLWSLGVLCYEFLVGLPPFESQSHS-----ETYKRI---RKVDLKFPSTISG-------------GAADLISRL  256 (281)
T ss_pred             CccchhhHHHHHHHHHHHHhcCCchhhhhhH-----HHHHHH---HHccccCCcccCh-------------hHHHHHHHH
Confidence            3455789999999999999999995432211     111111   1133444432211             145678899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+|.+..||+.
T Consensus       257 l~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  257 LVKNPIERLALTEVMD  272 (281)
T ss_pred             hccCccccccHHHHhh
Confidence            9999999999999864

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=81.18  E-value=0.53  Score=41.37  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEI  412 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~  412 (495)
                      .+.++||||+||-..|+.+++-|.+.-
T Consensus       229 Y~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  229 YSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             ceeehhhhhhhhhhhhhhhcccccccc
Confidence            567899999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-38
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-38
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-09
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-09
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		8e-09
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-08
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-08
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		6e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		7e-08
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-07
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-06
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		4e-05
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)
Query: 28  PTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGL---------------------- 65
           P   L  +W+++ + C + GVTC  R  +V ++++S                        
Sbjct: 22  PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 66  -----NLTGTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSIYFNNNTLFGE 118
                ++ G++ S     +SL +LDLS N   G +   +S+ + S L  +  ++NTL  +
Sbjct: 80  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 119 LPPNFCN--QMSNLESLFLKYNMFHGK--IPSTLS-SCKQLRELSLSSNYFSGTIPKEIG 173
            P       ++++LE L L  N   G   +   LS  C +L+ L++S N  SG +  ++ 
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXX 233
               L  L++  N     IP  LG+ + L+ L +  N L+G                   
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 234 XXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
             F G IP     L SLQ L L++N+ +GE+P  +     +L  L L  N F GA+P   
Sbjct: 254 NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 294 GNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQ 351
           G+ + L  L L  N   G++P + +  +R L+ L LS N+  G +P  + NLS +L++L 
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 352 LHNNSLSGS-LPSSADVPLPNLEELFLWEYGREGRV 386
           L +N+ SG  LP+    P   L+EL+L   G  G++
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)
Query: 28  PTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGL---------------------- 65
           P   L  +W+++ + C + GVTC  R  +V ++++S                        
Sbjct: 25  PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 66  -----NLTGTIPSELANLSSLQALDLSFNWFYGSIP--SSIFNMSSLLSIYFNNNTLFGE 118
                ++ G++ S     +SL +LDLS N   G +   +S+ + S L  +  ++NTL  +
Sbjct: 83  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 119 LPPNFCN--QMSNLESLFLKYNMFHGK--IPSTLS-SCKQLRELSLSSNYFSGTIPKEIG 173
            P       ++++LE L L  N   G   +   LS  C +L+ L++S N  SG +  ++ 
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXX 233
               L  L++  N     IP  LG+ + L+ L +  N L+G                   
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 234 XXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
             F G IP     L SLQ L L++N+ +GE+P  +     +L  L L  N F GA+P   
Sbjct: 257 NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 294 GNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQ 351
           G+ + L  L L  N   G++P + +  +R L+ L LS N+  G +P  + NLS +L++L 
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 352 LHNNSLSGS-LPSSADVPLPNLEELFLWEYGREGRV 386
           L +N+ SG  LP+    P   L+EL+L   G  G++
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 152/335 (45%), Gaps = 38/335 (11%)
Query: 13  DQQALLVLKAHVTDDPTNFLAKNWNTSSSFC--YWTGVTCDV--RSHRVAALNISGLNLT 68
           D+QALL +K  +  +PT     +W  ++  C   W GV CD   +++RV  L++SGLNL 
Sbjct: 7   DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 69  GT--IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQ 126
               IPS LANL  L  L      + G I                 N L G +PP    +
Sbjct: 64  KPYPIPSSLANLPYLNFL------YIGGI-----------------NNLVGPIPPAIA-K 99
Query: 127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
           ++ L  L++ +    G IP  LS  K L  L  S N  SGT+P  I +L  L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 187 KLQGEIPEELGNLAEL-EMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIG 245
           ++ G IP+  G+ ++L   + +  N LTG IP                    G      G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
           +  + QK++L+ N L+ +L   +G +  +L  L L  N   G +P+ +  L  L  L + 
Sbjct: 219 SDKNTQKIHLAKNSLAFDL-GKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP 340
            N L G+IP   GNL++ +    ++NK +   P P
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
           IPSS+ NL  L  LY+                          +N+  G IP  I  LT+L
Sbjct: 68  IPSSLANLPYLNFLYIGG------------------------INNLVGPIPPAIAKLTQL 103
Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
             LY+    + G IP  +  ++ L  L  S+N L G +P  I +L  L+ +    N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 360 SLPSS 364
           ++P S
Sbjct: 164 AIPDS 168

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 66  NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
           N+T T+  ++L  +++LQA  L      G     +  +++L  I F+NN L    P    
Sbjct: 30  NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
             ++ L  + +  N      P  L++   L  L+L +N  +   P  + NLT L RL L 
Sbjct: 82  KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
            N +       L  L  L+ L   +N +T   P                          +
Sbjct: 138 SNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--------------------------L 169
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
            NL++L++L +S N++S     ++   L +L++L    N  S   P  +G LT L +L L
Sbjct: 170 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
           + N+L+     +IG L  L  L    L++N++  +  AP+  L+ L  L+L  N +S   
Sbjct: 225 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 277
Query: 362 PSSADVPLPNLE 373
           P +    L NLE
Sbjct: 278 PLAGLTALTNLE 289

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 66  NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
           N+T T+  ++L  +++LQA  L      G     +  +++L  I F+NN L    P    
Sbjct: 30  NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
             ++ L  + +  N      P  L++   L  L+L +N  +   P  + NLT L RL L 
Sbjct: 82  KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
            N +       L  L  L+ L   +N +T   P                          +
Sbjct: 138 SNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--------------------------L 169
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
            NL++L++L +S N++S     ++   L +L++L    N  S   P  +G LT L +L L
Sbjct: 170 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
           + N+L+     +IG L  L  L    L++N++  +  AP+  L+ L  L+L  N +S   
Sbjct: 225 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 277
Query: 362 PSSADVPLPNLE 373
           P +    L NLE
Sbjct: 278 PLAGLTALTNLE 289

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 56/312 (17%)
Query: 66  NLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
           N+T T+  ++L  +++LQA  L      G     +  +++L  I F+NN L    P    
Sbjct: 30  NVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---L 81
Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
             ++ L  + +  N      P  L++   L  L+L +N  +   P  + NLT L RL L 
Sbjct: 82  KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSI 244
            N +       L  L  L+ L   +N +T   P                          +
Sbjct: 138 SNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--------------------------L 169
Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
            NL++L++L +S N++S     ++   L +L++L    N  S   P  +G LT L +L L
Sbjct: 170 ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 305 DQNKLQGKIPHEIGNLRKLEWLM---LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
           + N+L+     +IG L  L  L    L++N++  +  AP+  L+ L  L+L  N +S   
Sbjct: 225 NGNQLK-----DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS 277
Query: 362 PSSADVPLPNLE 373
           P +    L NLE
Sbjct: 278 PLAGLTALTNLE 289

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
           +++NLESL    N      P  L     L ELSL+ N       K+IG   +LT LT L+
Sbjct: 192 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
           L  N++    P  L  L +L  L L  N ++   P                         
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 277
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
            +  L++L  L L++NQL    P +   NL +L  L+LY N+ S   P  + +LTKL  L
Sbjct: 278 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
           +   NK+       + NL  + WL   HN++  +   P+ NL+ +  L L++ + + + +
Sbjct: 332 FFSNNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 387
Query: 362 PSSADVPLPN 371
              A+V +PN
Sbjct: 388 NYKANVSIPN 397

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
           +++NLESL    N      P  L     L ELSL+ N       K+IG   +LT LT L+
Sbjct: 196 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 248
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
           L  N++    P  L  L +L  L L  N ++   P                         
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 281
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
            +  L++L  L L++NQL    P +   NL +L  L+LY N+ S   P  + +LTKL  L
Sbjct: 282 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 335
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
           +   NK+       + NL  + WL   HN++  +   P+ NL+ +  L L++ + + + +
Sbjct: 336 FFANNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 391
Query: 362 PSSADVPLPN 371
              A+V +PN
Sbjct: 392 NYKANVSIPN 401

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
           +++NLESL    N      P  L     L ELSL+ N       K+IG   +LT LT L+
Sbjct: 192 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
           L  N++    P  L  L +L  L L  N ++   P                         
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 277
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
            +  L++L  L L++NQL    P +   NL +L  L+LY N+ S   P  + +LTKL  L
Sbjct: 278 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
           +   NK+       + NL  + WL   HN++  +   P+ NL+ +  L L++ + + + +
Sbjct: 332 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 387
Query: 362 PSSADVPLPN 371
              A+V +PN
Sbjct: 388 NYKANVSIPN 397

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 48/250 (19%)
Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLN 182
           +++NLESL    N      P  L     L ELSL+ N       K+IG   +LT LT L+
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 249
Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPS 242
           L  N++    P  L  L +L  L L  N ++   P                         
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------- 282
Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
            +  L++L  L L++NQL    P +   NL +L  L+LY N+ S   P  + +LTKL  L
Sbjct: 283 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336
Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS-L 361
           +   NK+       + NL  + WL   HN++  +   P+ NL+ +  L L++ + + + +
Sbjct: 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPV 392
Query: 362 PSSADVPLPN 371
              A+V +PN
Sbjct: 393 NYKANVSIPN 402

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQ 189
           + +FL  N       ++  SC+ L  L L SN  +G        LT L +L+L  N +L+
Sbjct: 34  QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
              P     L  L  L L    L    P                  F G        L++
Sbjct: 94  VVDPTTFRGLGHLHTLHLDRCGLQELGP----------------GLFRG--------LAA 129
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
           LQ LYL DN L           LP         N F     +++GNLT    L+L  N++
Sbjct: 130 LQYLYLQDNNLQA---------LPD--------NTF-----RDLGNLTH---LFLHGNRI 164
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPL 369
                H    L  L+ L+L  N +  V P    +L  L++L L  N+LS  LP+   VPL
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPL 223
Query: 370 PNLEELFL 377
            +L+ L L
Sbjct: 224 RSLQYLRL 231

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXX 226
            IP  I   TK  +L+L+ NKL     +    L +L +L+L +N L  T+P         
Sbjct: 30  AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP--------- 77
Query: 227 XXXXXXXXXFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286
                      GI       L +L+ L+++DN+L   LP  + + L +L  L L  N   
Sbjct: 78  ----------AGIFKE----LKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK 122
Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
              P+   +LTKLT L L  N+LQ         L  L+ L L +N+L  V       L+ 
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIY 393
           L +L+L NN L   +P  A   L  L+ L L E   +   + NG IY
Sbjct: 183 LKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD--CTCNGIIY 226

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 26/226 (11%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQ 189
           + +FL  N       ++  +C+ L  L L SN  +         L  L +L+L  N +L+
Sbjct: 34  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
              P     L  L  L L    L    P                  F G        L++
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGP----------------GLFRG--------LAA 129
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
           LQ LYL DN L   LP +   +L +L  L L+ N  S    +    L  L  L L QN++
Sbjct: 130 LQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
               PH   +L +L  L L  N L  +    +  L  L  L+L++N
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 26/226 (11%)
Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQ 189
           + +FL  N       ++  +C+ L  L L SN  +         L  L +L+L  N +L+
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXXXFTGIIPSSIGNLSS 249
              P     L  L  L L    L    P                  F G        L++
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGP----------------GLFRG--------LAA 130
Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL 309
           LQ LYL DN L   LP +   +L +L  L L+ N  S    +    L  L  L L QN++
Sbjct: 131 LQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 310 QGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
               PH   +L +L  L L  N L  +    +  L  L  L+L++N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 84  LDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHG 142
           LDL  N    S+P+ +F+ ++SL  +Y   N L   LP    N++++L  L L  N    
Sbjct: 33  LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 143 KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
                     QL+EL+L++N            LT+L  L L QN+L+         L  L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 203 EMLWLQNNSLTGTIP 217
           + +WL +N    T P
Sbjct: 151 QYIWLHDNPWDCTCP 165

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
           L+SL +LYL  N+L   LP  + N L SL  L+L  N            LT+L +L L+ 
Sbjct: 51  LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 307 NKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLP 362
           N+LQ         L +L+ L L  N+L   VP  +F+ L++L  + LH+N    + P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 165

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 82  QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH 141
            ALDLS N    +I ++IF    L  +Y N N+L  ELP    N +SNL  L L +N   
Sbjct: 227 HALDLS-NLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKN-LSNLRVLDLSHNRL- 282
Query: 142 GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
             +P+ L SC QL+      N  + T+P E GNL  L  L +  N L+ + 
Sbjct: 283 TSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
           G+     G  SS  +L L  N+L   LP  + + L  L  LSL  N            LT
Sbjct: 18  GLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 298 KLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNN 355
           KLT LYL +NKLQ  +P+ +   L +L+ L L  N+L   VP  IF+ L++L  + LH N
Sbjct: 77  KLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
Query: 356 SLSGSLP 362
               S P
Sbjct: 135 PWDCSCP 141

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 175 LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXX 234
           LTKLT LNL  N+LQ        +L EL  L L NN L  ++P                 
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPL---------------- 100
Query: 235 XFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
              G+      +L+ L KLYL  NQL   LP+ + + L  L+ L L  N           
Sbjct: 101 ---GVFD----HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 295 NLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNKL 333
            LT L  L L  N+LQ  +PH     L KL+ + L  N+ 
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 175 LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPXXXXXXXXXXXXXXXXX 234
           LTKLT LNL  N+LQ        +L EL  L L NN L  ++P                 
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPL---------------- 100
Query: 235 XFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
              G+      +L+ L KLYL  NQL   LP+ + + L  L+ L L  N           
Sbjct: 101 ---GVFD----HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 295 NLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNKL 333
            LT L  L L  N+LQ  +PH     L KL+ + L  N+ 
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
           S L  L++L  L L+ N    S+P+ +F+ +++L  +    N L   LP    ++++NL 
Sbjct: 79  SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLT 136
Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
            L L +N               L EL LS N            LT+L  L L QN+L+  
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 192 IPEELGNLAELEMLWLQNNSLTGTIP 217
                  L  L+ +WL +N    T P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-56
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-52
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-44
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-47
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-46
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-30
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-22
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-22
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-07
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	8e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  341 bits (877), Expect = e-109
 Identities = 111/411 (27%), Positives = 190/411 (46%), Gaps = 46/411 (11%)

Query: 2   IASANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALN 61
             ++ + S+  +   L+  K  + D   N L  +W+++ + C + GVTC     +V +++
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDK--NLLP-DWSSNKNPCTFDGVTCR--DDKVTSID 56

Query: 62  ISGLNL---------------------------TGTIPSELANLSSLQALDLSFNWFYGS 94
           +S   L                            G++       +SL +LDLS N   G 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 95  IPS--SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTL---S 149
           + +  S+ + S L  +  ++NTL      +   ++++LE L L  N   G          
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 150 SCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN 209
            C +L+ L++S N  SG +   +     L  L++  N     IP  LG+ + L+ L +  
Sbjct: 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG 232

Query: 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269
           N L+G    +I + + L  L++S N F G IP     L SLQ L L++N+ +GE+P  + 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290

Query: 270 NNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLML 328
               +L  L L  N F GA+P   G+ + L  L L  N   G++P + +  +R L+ L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 329 SHNKLVGVVPAPIFNLST-LISLQLHNNSLSGSLPSS-ADVPLPNLEELFL 377
           S N+  G +P  + NLS  L++L L +N+ SG +  +    P   L+EL+L
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  303 bits (779), Expect = 4e-95
 Identities = 117/309 (37%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 60  LNISGLNLTGTIPSELA-NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           L+++    TG IP  L+    +L  LDLS N FYG++P    + S L S+  ++N   GE
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCK-QLRELSLSSNYFSGTIPKEIGN--L 175
           LP +   +M  L+ L L +N F G++P +L++    L  L LSSN FSG I   +     
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
             L  L L+ N   G+IP  L N +EL  L L  N L+GTIPSS+ SLS L +L L LN 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
             G IP  +  + +L+ L L  N L+GE+P+ + N   +L  +SL  N  +G IPK IG 
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGR 512

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
           L  L  L L  N   G IP E+G+ R L WL L+ N   G +PA +F  S      +  N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAAN 568

Query: 356 SLSGSLPSS 364
            ++G     
Sbjct: 569 FIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  302 bits (777), Expect = 8e-95
 Identities = 112/327 (34%), Positives = 153/327 (46%), Gaps = 15/327 (4%)

Query: 60  LNISGLNLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIF---NMSSLLSIYFNNNTL 115
           LN+S   L      S    L+SL+ LDLS N   G+             L  +  + N +
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL 175
            G++         NLE L +  N F   IP  L  C  L+ L +S N  SG   + I   
Sbjct: 191 SGDVD--VSR-CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLN 234
           T+L  LN+  N+  G IP     L  L+ L L  N  TG IP  +  +  +L  LDLS N
Sbjct: 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
           +F G +P   G+ S L+ L LS N  SGELP +    +  L+ L L  N+FSG +P+ + 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 295 NLT-KLTDLYLDQNKLQGKIPHEIGN--LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
           NL+  L  L L  N   G I   +       L+ L L +N   G +P  + N S L+SL 
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 352 LHNNSLSGSLPSSADVPLPNLEELFLW 378
           L  N LSG++PSS    L  L +L LW
Sbjct: 425 LSFNYLSGTIPSSL-GSLSKLRDLKLW 450

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (767), Expect = 2e-93
 Identities = 117/310 (37%), Positives = 166/310 (53%), Gaps = 10/310 (3%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIFNMS-SLLSIYFNNNTLFG 117
           L +S  N +G +P + L  +  L+ LDLSFN F G +P S+ N+S SLL++  ++N   G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 118 ELPPNFCN-QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT 176
            + PN C    + L+ L+L+ N F GKIP TLS+C +L  L LS NY SGTIP  +G+L+
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236
           KL  L L  N L+GEIP+EL  +  LE L L  N LTG IPS + + ++L  + LS N  
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL 296
           TG IP  IG L +L  L LS+N  SG +PA +G +  SL  L L  N F+G IP  +   
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN--KLVGVVPAPIFNLSTLISLQLHN 354
           +      +  N + GK    I N    +    + N  +  G+    +  LST     + +
Sbjct: 562 SGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 355 NSLSGSLPSS 364
               G    +
Sbjct: 618 RVYGGHTSPT 627

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  290 bits (745), Expect = 3e-90
 Identities = 102/307 (33%), Positives = 146/307 (47%), Gaps = 8/307 (2%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++S   L+GTIPS L +LS L+ L L  N   G IP  +  + +L ++  + N L GE+
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
           P    N  +NL  + L  N   G+IP  +   + L  L LS+N FSG IP E+G+   L 
Sbjct: 483 PSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN--NFT 237
            L+L  N   G IP  +   +      +  N + G     I +         + N   F 
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
           GI    +  LS+     ++     G       N   S+  L +  N  SG IPKEIG++ 
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
            L  L L  N + G IP E+G+LR L  L LS NKL G +P  +  L+ L  + L NN+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 358 SGSLPSS 364
           SG +P  
Sbjct: 717 SGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  176 bits (448), Expect = 5e-48
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 174 NLTKLTRLNLRQNKLQ---GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLD 230
              K+T ++L    L      +   L +L  LE L+L N+ + G++       +SL +LD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 231 LSLNNFTGIIPS--SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           LS N+ +G + +  S+G+ S L+ L +S N L      + G  L SL+ L L  N  SGA
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 289 IPKEI---GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS 345
                       +L  L +  NK+ G +   +     LE+L +S N     +P  + + S
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223

Query: 346 TLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
            L  L +  N LSG    +       L+ L + 
Sbjct: 224 ALQHLDISGNKLSGDFSRAI-STCTELKLLNIS 255

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
            LN+   +++G+IP E+ +L  L  LDLS N   G IP ++  ++ L  I  +NN L G 
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 119 LPPNFCNQMSNLES 132
           +P     Q      
Sbjct: 720 IPEM--GQFETFPP 731

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  291 bits (747), Expect = 1e-95
 Identities = 100/361 (27%), Positives = 147/361 (40%), Gaps = 64/361 (17%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCY--WTGVTCDVRSH--RVAALNISGLNL 67
            D+QALL +K  + +  T  L+ +W  ++  C   W GV CD  +   RV  L++SGLNL
Sbjct: 6   QDKQALLQIKKDLGNPTT--LS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 68  TGT--IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN 125
                IPS LANL  L  L +                                       
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIG-------------------------------------- 84

Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQ 185
                       N   G IP  ++   QL  L ++    SG IP  +  +  L  L+   
Sbjct: 85  ----------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 186 NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLN-LDLSLNNFTGIIPSSI 244
           N L G +P  + +L  L  +    N ++G IP S  S S L   + +S N  TG IP + 
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
            NL+ L  + LS N L G+     G+   + Q + L  N  +  +  ++G    L  L L
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251

Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQL-HNNSLSGS-LP 362
             N++ G +P  +  L+ L  L +S N L G +P    NL         +N  L GS LP
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

Query: 363 S 363
           +
Sbjct: 311 A 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  239 bits (613), Expect = 1e-75
 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 5/230 (2%)

Query: 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGT--IPKEIGNLTKLTRLNLR-QNKLQGEIPE 194
             + G +  T +   ++  L LS         IP  + NL  L  L +   N L G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 195 ELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLY 254
            +  L +L  L++ + +++G IP  +  + +L+ LD S N  +G +P SI +L +L  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 255 LSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIP 314
              N++SG +P + G+      ++++  N  +G IP    NL  L  + L +N L+G   
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214

Query: 315 HEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS 364
              G+ +  + + L+ N L   +   +     L  L L NN + G+LP  
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG 263

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  247 bits (632), Expect = 6e-75
 Identities = 60/360 (16%), Positives = 126/360 (35%), Gaps = 26/360 (7%)

Query: 35  NWNTSSSFCYWT---GVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWF 91
           NWN +     W    GV+ +  + RV  L++ G   +G +P  +  L+ L+ L L  +  
Sbjct: 59  NWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117

Query: 92  YG----SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN-QMSNLESLFLKYNMFHGKIPS 146
                   P  I    S                        S+L    +  +     I  
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 147 TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW 206
           +     +  ++   SN  +  + K +  LTKL +  +  +    E   E           
Sbjct: 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----EN 231

Query: 207 LQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG--EL 264
            +      T      +L  L ++++        +P+ +  L  +Q + ++ N+     +L
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 265 PANIGN-----NLPSLQTLSLYVNDF-SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIG 318
             +            +Q + +  N+  +  +   +  + KL  L    N+L+GK+P   G
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350

Query: 319 NLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVP-LPNLEELFL 377
           +  KL  L L++N++  +          + +L   +N L   +P+  D   +  +  +  
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (559), Expect = 2e-64
 Identities = 62/351 (17%), Positives = 120/351 (34%), Gaps = 43/351 (12%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWF--------YGSIPSSIFNMSSLLSIYFN 111
           + +        +P+ L  L  +Q ++++ N               +       +  IY  
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 112 NNTLF-GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK 170
            N L    +  +    M  L  L   YN   GK+P+   S  +L  L+L+ N  +     
Sbjct: 314 YNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPAN 371

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPE--ELGNLAELEMLWLQNNSLTG-------TIPSSIF 221
             G   ++  L+   NKL+  IP   +  +++ +  +    N +          +  + F
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN-------NLPS 274
              ++ +++LS N  +          S L  + L  N L+  +P N          N   
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYL 489

Query: 275 LQTLSLYVNDFSGAIPKEI--GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL------ 326
           L ++ L  N  +  +  +     L  L  + L  N      P +  N   L+        
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

Query: 327 MLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
               N+ +   P  I    +L  LQ+ +N +   +        PN+  L +
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (541), Expect = 9e-62
 Identities = 62/342 (18%), Positives = 115/342 (33%), Gaps = 33/342 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWF-YGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           ++   L       ++      +Q + + +N      + +S+  M  L  +    N L G 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG- 344

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK--EIGNLT 176
             P F +    L SL L YN       +     +Q+  LS + N     IP   +  +++
Sbjct: 345 KLPAFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402

Query: 177 KLTRLNLRQNKLQG-------EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNL 229
            ++ ++   N++          +         +  + L NN ++        + S L ++
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 230 DLSLNNFTGI-------IPSSIGNLSSLQKLYLSDNQLSGELPANIGN-NLPSLQTLSLY 281
           +L  N  T I          +  N   L  + L  N+L+  L  +     LP L  + L 
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLS 521

Query: 282 VNDFSGAIPKEIGNLTKLTDLYLDQ------NKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
            N FS   P +  N + L    +        N+   + P  I     L  L +  N +  
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 336 VVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           V          +  L + +N    S+  S   P        L
Sbjct: 581 VNEK---ITPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  210 bits (537), Expect = 3e-61
 Identities = 60/323 (18%), Positives = 107/323 (33%), Gaps = 32/323 (9%)

Query: 60  LNISGLNL-TGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           + I   NL T  + + L  +  L  L+  +N   G +P+   +   L S+    N    E
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYN-QITE 367

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLS--SCKQLRELSLSSNYFSG-------TIP 169
           +P NFC     +E+L   +N     IP+     S   +  +  S N            + 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 170 KEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG-------TIPSSIFS 222
                   ++ +NL  N++     E     + L  + L  N LT            +  +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 223 LSSLLNLDLSLNNFTGIIPS-SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
              L ++DL  N  T +        L  L  + LS N  S   P    N   +L+   + 
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIR 544

Query: 282 V------NDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
                  N      P+ I     LT L +  N ++  +  +I     +  L +  N  + 
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNIS 601

Query: 336 VVPAPIFNLSTLISLQLHNNSLS 358
           +  + +          L  +   
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  218 bits (558), Expect = 7e-64
 Identities = 82/332 (24%), Positives = 125/332 (37%), Gaps = 18/332 (5%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
            + S L LT  +P +L   +++  L+L+ N       ++    S L S+    NT+  +L
Sbjct: 9   ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 64

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
            P  C ++  L+ L L++N        T + C  L EL L SN               L 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPS--SIFSLSSLLNLDLSLNNFT 237
            L+L  N L          L  L+ L L NN +         IF+ SSL  L+LS N   
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN--NLPSLQTLSLYVNDFSGAIPKEIGN 295
              P     +  L  L+L++ QL   L   +       S++ LSL  +  S         
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 296 L--TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353
           L  T LT L L  N L          L +LE+  L +N +  +    +  L  +  L L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 354 NNSLSGSL--------PSSADVPLPNLEELFL 377
            +    S+           +   L  LE L +
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (553), Expect = 3e-63
 Identities = 78/333 (23%), Positives = 121/333 (36%), Gaps = 17/333 (5%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           LN++   L     +     S L +LD+ FN      P     +  L  +   +N L  +L
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQL 88

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                   +NL  L L  N       +     K L  L LS N  S T       L  L 
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 180 RLNLRQNKLQGEIPEELGNLA--ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237
            L L  NK+Q    EEL   A   L+ L L +N +    P    ++  L  L L+     
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 238 GIIPSSIG---NLSSLQKLYLSDNQLSGELPANIGN-NLPSLQTLSLYVNDFSGAIPKEI 293
             +   +      +S++ L LS++QLS             +L  L L  N+ +       
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN---------KLVGVVPAPIFNL 344
             L +L   +L+ N +Q    H +  L  + +L L  +          L  +       L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 345 STLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             L  L + +N + G + S+    L NL+ L L
Sbjct: 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (540), Expect = 3e-61
 Identities = 69/337 (20%), Positives = 126/337 (37%), Gaps = 21/337 (6%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++    ++   P     L  L+ L+L  N        +    ++L  ++  +N++    
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG--NLTK 177
              F     NL +L L +N        T    + L+EL LS+N       +E+     + 
Sbjct: 114 NNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF---SLSSLLNLDLSLN 234
           L +L L  N+++   P     +  L  L+L N  L  ++   +    + +S+ NL LS +
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 235 NFTGIIPSSIGNL--SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE 292
             +    ++   L  ++L  L LS N L+  +  +    LP L+   L  N+        
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 293 IGNLTKLTDLYLDQN---------KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN 343
           +  L  +  L L ++          L          L+ LE L +  N + G+       
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 344 LSTLISLQLHNNSLSGSLPSS---ADVPLPNLEELFL 377
           L  L  L L N+  S    ++     +    L  L L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  207 bits (530), Expect = 7e-60
 Identities = 74/362 (20%), Positives = 125/362 (34%), Gaps = 46/362 (12%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           LN+    L+       A  ++L  L L  N       +      +L+++  ++N L    
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-T 136

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCK--QLRELSLSSNYFSGTIPKEIGNLTK 177
                 Q+ NL+ L L  N         L       L++L LSSN      P     + +
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 178 LTRLNLRQNKLQGEIPEELG---NLAELEMLWLQNNSLTGTIPSSIFSL--SSLLNLDLS 232
           L  L L   +L   + E+L        +  L L N+ L+ T  ++   L  ++L  LDLS
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY---------VN 283
            NN   +   S   L  L+  +L  N +      ++   L +++ L+L          + 
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLA 315

Query: 284 DFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH------------- 330
                       L  L  L ++ N + G   +    L  L++L LS+             
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 331 ---------------NKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEEL 375
                          NK+  +       L  L  L L  N +   L       L N+ E+
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 376 FL 377
           +L
Sbjct: 436 YL 437

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (522), Expect = 8e-59
 Identities = 69/330 (20%), Positives = 109/330 (33%), Gaps = 23/330 (6%)

Query: 54  SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNN 113
                  +IS  +L          L  L+ L++  N   G   +    + +L  +  +N+
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 114 TL-FGELPPNFCNQM--SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP- 169
                 L       +  S L  L L  N          S    L  L L  N     +  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 170 KEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG--TIPSSIFSLSSLL 227
           +E   L  +  + L  NK           +  L+ L L+  +L    + PS    L +L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 228 NLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
            LDLS NN   I    +  L  L+ L L  N L+                  L+ +   G
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWKHANPG 526

Query: 288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
                +  L+ L  L L+ N           +L +L+ + L  N L  +  +   N  +L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 348 ISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            SL L  N ++            NL EL +
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (515), Expect = 7e-58
 Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 28/345 (8%)

Query: 60  LNISGLNLTGTIPSELA---NLSSLQALDLSFNWFYGSIPSSIFNM--SSLLSIYFNNNT 114
           L ++ + L  ++  +L      +S++ L LS +    +  ++   +  ++L  +  + N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 115 LFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI------ 168
           L   +  +    +  LE  FL+YN        +L     +R L+L  ++   +I      
Sbjct: 260 LNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 169 ---PKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT-GTIPSSIFS-- 222
                    L  L  LN+  N + G        L  L+ L L N+  +  T+ +  F   
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 223 -LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
             S L  L+L+ N  + I   +   L  L+ L L  N++  EL       L ++  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 282 VNDFSGAIPKEIGNLTKLTDLYLDQNKLQG--KIPHEIGNLRKLEWLMLSHNKLVGVVPA 339
            N +          +  L  L L +  L+     P     LR L  L LS+N +  +   
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 340 PIFNLSTLISLQLHNNSLS-------GSLPSSADVPLPNLEELFL 377
            +  L  L  L L +N+L+          P      L +L  L L
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (445), Expect = 5e-48
 Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 16/287 (5%)

Query: 61  NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120
             S   LT      LA+ S L  L+L+ N        +   +  L  +    N +  EL 
Sbjct: 364 FTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG--TIPKEIGNLTKL 178
                 + N+  ++L YN +     ++ +    L+ L L         + P     L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT--------GTIPSSIFSLSSLLNLD 230
           T L+L  N +     + L  L +LE+L LQ+N+L         G     +  LS L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 231 LSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP 290
           L  N F  I      +L  L+ + L  N L+  LPA++ NN  SL++L+L  N  +    
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 291 KEIG-NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGV 336
           K  G     LT+L +  N            +    W+  +H  +  +
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCTCESIAWFVN---WINETHTNIPEL 645

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  169 bits (431), Expect = 4e-46
 Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 12/265 (4%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           LN++   ++       + L  L+ LDL  N     +    +  + ++  IY + N     
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ- 444

Query: 119 LPPNFCNQMSNLESLFLKYNMFHG--KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT 176
           L  N    + +L+ L L+          PS     + L  L LS+N  +      +  L 
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 177 KLTRLNLRQNKLQ--------GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLN 228
           KL  L+L+ N L         G     L  L+ L +L L++N            L  L  
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           +DL LNN   +  S   N  SL+ L L  N ++       G    +L  L +  N F   
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKI 313
                  +  + + + +  +L    
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHY 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  216 bits (551), Expect = 7e-62
 Identities = 63/405 (15%), Positives = 118/405 (29%), Gaps = 41/405 (10%)

Query: 2   IASANTTSITTDQQALLVLKAHVTDDPTNF---------LAKNWNTSSSFCYWTGVTCDV 52
           I    T     D +AL  +   +      +          + NWN +     W       
Sbjct: 259 IQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD 318

Query: 53  RSH--RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYF 110
             +  RV  L+++G    G +P  +  L+ L+ L    +    S         +      
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG---- 166
             + +       F +    L    L  +  +      +   K+   +SL           
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 167 --TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLS 224
              I K I  LTKL  +    +    +         + E               S  +L 
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSNLK 491

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG---------ELPANIGNNLPSL 275
            L +++L        +P  + +L  LQ L ++ N+             L  +     P +
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-TGPKI 550

Query: 276 QTLSLYVNDFSGAIPKE--IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
           Q   +  N+     P    +  + KL  L    NK+  +     G   KL  L L +N++
Sbjct: 551 QIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQI 607

Query: 334 VGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
              +P         +  L   +N L           +  +  +  
Sbjct: 608 EE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  204 bits (520), Expect = 1e-57
 Identities = 59/350 (16%), Positives = 116/350 (33%), Gaps = 43/350 (12%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYG---------SIPSSIFNMSSLLSIYF 110
           + +        +P  L +L  LQ+L+++ N              +         +   Y 
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK 170
             N L          +M  L  L   +N    +      +  +L +L L  N     IP+
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPE 612

Query: 171 EIG-NLTKLTRLNLRQNKLQGEIPE--ELGNLAELEMLWLQNNSLTGTIPS-----SIFS 222
           +      ++  L    NKL+  IP      ++  +  +    N +     +       + 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 223 LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN-------NLPSL 275
             +   + LS N             S +  + LS+N ++  +P N          N   L
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL 730

Query: 276 QTLSLYVNDFSGAIPKEI--GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH--- 330
            T+ L  N  +  +  +     L  L+++ +  N      P +  N  +L+   + H   
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 331 ---NKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
              N+++   P  I    +LI LQ+ +N +   +        P L  L +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL---TPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (452), Expect = 2e-48
 Identities = 55/322 (17%), Positives = 97/322 (30%), Gaps = 33/322 (10%)

Query: 60  LNISGLNLTGTIPS-ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
             +   NL     S  L  +  L  LD   N        +      L  +  + N    E
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYN-QIEE 609

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIPKEIG--- 173
           +P +FC     +E L   +N     IP+     S   +  +  S N       + I    
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSM 667

Query: 174 ---NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT-------GTIPSSIFSL 223
                   + + L  N++Q    E     + +  + L NN +T            +  + 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 224 SSLLNLDLSLNNFTGIIPS-SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSL-- 280
             L  +DL  N  T +        L  L  + +S N  S   P    N    L+   +  
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLN-SSQLKAFGIRH 785

Query: 281 ----YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGV 336
                 N      P  I     L  L +  N ++ K+  ++    +L  L ++ N  + +
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI 842

Query: 337 VPAPIFNLSTLISLQLHNNSLS 358
               +          L  +   
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (421), Expect = 3e-44
 Identities = 52/343 (15%), Positives = 113/343 (32%), Gaps = 24/343 (6%)

Query: 51  DVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYF 110
           D +  + A + I        I    A  +  +ALD   NW Y S   +    S   +   
Sbjct: 248 DNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNK 306

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK 170
             + ++G+ P    +    +  L L      G++P  +    +L+ LS  ++  + +   
Sbjct: 307 ELD-MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLT-----GTIPSSIFSLS 224
                        R+++++    +  L     L +  L  +++        I        
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
               +    N  T I   +I  L+ LQ +Y +++  + +  A         +  +     
Sbjct: 426 KDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAV------DWEDANSDYAK 478

Query: 285 FSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGV-------- 336
                     NL  LTD+ L       ++P  + +L +L+ L ++ N+ +          
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 337 -VPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
            +         +    +  N+L     S++   +  L  L   
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 33/271 (12%), Positives = 83/271 (30%), Gaps = 25/271 (9%)

Query: 122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRL 181
           +F    + L+ + + Y     +  +  ++  +  ++ +++   +  +P     +   T  
Sbjct: 165 SFNRVTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYTTY 224

Query: 182 NLRQNKLQGEIPEELGNLAELEMLWLQNNSLT-------------GTIPSSIFSLSSLLN 228
           +            E  ++   E   + +N LT               I       +    
Sbjct: 225 S---QSGIKRSELETQSVRG-ESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEA 280

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           LD     +     ++  +  +    +  +  + G+ P    +N   +  LSL      G 
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWN--FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP------APIF 342
           +P  IG LT+L  L    +                +      +++               
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 343 NLSTLISLQLHNNSLSGSLPSSADVPLPNLE 373
           NLS L+   ++ N     +   + + L + +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  189 bits (481), Expect = 4e-56
 Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 23/314 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L   G          L+        D +         +S     +   I           
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKAT 71

Query: 120 PPNFCN-QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
                +       +L L+      + P        L+ +++ +      +P  +     L
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL 129

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSI---------FSLSSLLNL 229
             L L +N L+  +P  + +L  L  L ++       +P  +           L +L +L
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 230 DLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAI 289
            L       + P+SI NL +L+ L + ++ LS  L   I + LP L+ L L         
Sbjct: 189 RLEWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNY 245

Query: 290 PKEIGNLTKLTDLYL-DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLI 348
           P   G    L  L L D + L   +P +I  L +LE L L     +  +P+ I  L    
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 349 SLQLHNNSLSGSLP 362
            + +  +  +    
Sbjct: 305 IILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  179 bits (456), Expect = 2e-52
 Identities = 67/312 (21%), Positives = 106/312 (33%), Gaps = 24/312 (7%)

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
           + S  + L    +         +       +   N                +N +     
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRT 64

Query: 137 YNMFHGKIPSTLSSCKQ--LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE 194
                      L    Q     L L S       P +   L+ L  + +    L  E+P+
Sbjct: 65  GRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 195 ELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN-------- 246
            +   A LE L L  N L   +P+SI SL+ L  L +        +P  + +        
Sbjct: 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 247 -LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
            L +LQ L L    +   LPA+I N L +L++L +  +  S A+   I +L KL +L L 
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSA 365
                   P   G    L+ L+L     +  +P  I  L+ L  L L        LPS  
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 366 DVPLPNLEELFL 377
              LP    + +
Sbjct: 298 -AQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  158 bits (402), Expect = 1e-44
 Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 24/262 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +  + L    P +   LS LQ + +        +P ++   + L ++    N L   L
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPL-RAL 142

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
           P +  + ++ L  L             ++ +C +L    L     S     E   L  L 
Sbjct: 143 PASIAS-LNRLREL-------------SIRACPELT--ELPEPLASTDASGEHQGLVNLQ 186

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L L    ++  +P  + NL  L+ L ++N+ L+  +  +I  L  L  LDL        
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244

Query: 240 IPSSIGNLSSLQKLYLSD-NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
            P   G  + L++L L D + L   LP +I   L  L+ L L        +P  I  L  
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLL-TLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 299 LTDLYLDQNKLQGKIPHEIGNL 320
              + +  +       H     
Sbjct: 303 NCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  154 bits (392), Expect = 4e-43
 Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 35/284 (12%)

Query: 123 FCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG---------------- 166
             +  S  E+L+ + +         LS  ++      +  + +                 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 167 ---TIPKEIGNLT--KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221
                   + + T      L LR   L  + P++   L+ L+ + +    L   +P ++ 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN--------NLP 273
             + L  L L+ N    + P+SI +L+ L++L +       ELP  + +         L 
Sbjct: 125 QFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
           +LQ+L L       ++P  I NL  L  L +  + L   +   I +L KLE L L     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +   P      + L  L L + S   +LP      L  LE+L L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDL 284

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (364), Expect = 3e-39
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 13/224 (5%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           + I    L   +P  +   + L+ L L+ N    ++P+SI +++ L  +         EL
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTEL 166

Query: 120 PPNFCN--------QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKE 171
           P    +         + NL+SL L++      +P+++++ + L+ L + ++  S  +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 172 IGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL 231
           I +L KL  L+LR        P   G  A L+ L L++ S   T+P  I  L+ L  LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 232 SLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL 275
                   +PS I  L +   + +  +  + +L  +     P+ 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA-QLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (304), Expect = 7e-31
 Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 39/243 (16%)

Query: 166 GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNL--------------------AELEML 205
           G+      + +    L  + +       + L                          ++ 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 206 WLQNNSLTGTIPSSIFSLSS--LLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263
                +L       +   +    + L+L         P     LS LQ + +    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN---- 319
           LP  +      L+TL+L  N    A+P  I +L +L +L +       ++P  + +    
Sbjct: 119 LPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 320 -----LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE 374
                L  L+ L L    +   +PA I NL  L SL++ N+ LS +L  +    LP LEE
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEE 233

Query: 375 LFL 377
           L L
Sbjct: 234 LDL 236

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (499), Expect = 5e-56
 Identities = 73/307 (23%), Positives = 119/307 (38%), Gaps = 9/307 (2%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           +N+          +     S LQ LDL+       +PS +  +S+L  +  + N  F  L
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSAN-KFENL 316

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSN--YFSGTIPKEIGNLT 176
                +   +L  L +K N    ++ +  L + + LREL LS +    S     ++ NL+
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN 235
            L  LNL  N+      E      +LE+L L    L      S F  L  L  L+LS + 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSG--ELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
                      L +LQ L L  N          N    L  L+ L L   D S       
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353
            +L  +  + L  N+L       + +L+ +  L L+ N +  ++P+ +  LS   ++ L 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555

Query: 354 NNSLSGS 360
            N L  +
Sbjct: 556 QNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (490), Expect = 1e-54
 Identities = 69/323 (21%), Positives = 115/323 (35%), Gaps = 8/323 (2%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L  S   L     +  + L +L  LDL+    Y     +  +   L ++    N L   +
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFM 96

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                +    L+ LF             L + K L  L L SN+ S     +     KL 
Sbjct: 97  AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156

Query: 180 RLNLRQNKLQGEIPEELGNLAELEM--LWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237
            L+ + N +     E++ +L +     L L  N +   I    F  +   +L+       
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNL 215

Query: 238 GIIPSSIGN--LSSLQKLYLSDNQLSGELPANI-GNNLPSLQTLSLYVNDFSGAIPKEIG 294
            +I   + N  + SL      D       PA   G    S+++++L  + F         
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN 354
             + L +L L    L  ++P  +  L  L+ L+LS NK   +      N  +L  L +  
Sbjct: 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 355 NSLSGSLPSSADVPLPNLEELFL 377
           N+    L +     L NL EL L
Sbjct: 335 NTKRLELGTGCLENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  186 bits (475), Expect = 1e-52
 Identities = 74/327 (22%), Positives = 125/327 (38%), Gaps = 14/327 (4%)

Query: 60  LNISGLNLTGTIPSELANLS--SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG 117
                ++     P+    L   S+++++L  ++F+    ++    S L  +      L  
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-S 291

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKE-IGNLT 176
           ELP      +S L+ L L  N F      + S+   L  LS+  N     +    + NL 
Sbjct: 292 ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 177 KLTRLNLRQNKLQ--GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234
            L  L+L  + ++       +L NL+ L+ L L  N        +      L  LDL+  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 235 NFTGIIP-SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
                   S   NL  L+ L LS + L       + + LP+LQ L+L  N F     ++ 
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 294 G---NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISL 350
                L +L  L L    L     H   +L+ +  + LSHN+L       + +L  +  L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-L 528

Query: 351 QLHNNSLSGSLPSSADVPLPNLEELFL 377
            L +N +S  +  S    L     + L
Sbjct: 529 NLASNHIS-IILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (472), Expect = 3e-52
 Identities = 68/325 (20%), Positives = 111/325 (34%), Gaps = 9/325 (2%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +   +++     +      L+ LD   N  +      + ++    ++  N N      
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCK--QLRELSLSSNYFSGTIPKEIGNLTK 177
                   +  +SL          I   L +     L   +          P     L +
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 178 --LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
             +  +NL+++             + L+ L L    L+  +PS +  LS+L  L LS N 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND--FSGAIPKEI 293
           F  +   S  N  SL  L +  N    EL      NL +L+ L L  +D   S     ++
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQL 352
            NL+ L  L L  N+             +LE L L+  +L        F NL  L  L L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 353 HNNSLSGSLPSSADVPLPNLEELFL 377
            ++ L           LP L+ L L
Sbjct: 433 SHSLLD-ISSEQLFDGLPALQHLNL 456

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (471), Expect = 5e-52
 Identities = 75/328 (22%), Positives = 126/328 (38%), Gaps = 16/328 (4%)

Query: 60  LNISGLNLTGTIPSELAN--LSSLQALDLSFNWFYGSIPSSIFNMS--SLLSIYFNNNTL 115
           LN  G      I   L N  + SL              P+    +   S+ SI    +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL 175
           F  +  N  +  S L+ L L       ++PS L     L++L LS+N F         N 
Sbjct: 267 FN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 176 TKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLT--GTIPSSIFSLSSLLNLDLS 232
             LT L+++ N  + E+    L NL  L  L L ++ +         + +LS L +L+LS
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE 292
            N    +   +      L+ L L+  +L  +   +   NL  L+ L+L  +    +  + 
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 293 IGNLTKLTDLYLDQNKLQGKIPHEIG---NLRKLEWLMLSHNKLVGVVPAPIFNLSTLIS 349
              L  L  L L  N        +      L +LE L+LS   L  +      +L  +  
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 350 LQLHNNSLSGSLPSSADVPLPNLEELFL 377
           + L +N L+ S   +    L +L+ ++L
Sbjct: 505 VDLSHNRLTSSSIEA----LSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  179 bits (456), Expect = 6e-50
 Identities = 78/326 (23%), Positives = 125/326 (38%), Gaps = 12/326 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++   L     + L+   +L+ L              + N  +L S+Y  +N +   +
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSI 144

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNY-FSGTIPKEIGNLTKL 178
                     L+ L  + N  H      +SS +Q   LSL+ N      I     +    
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 179 TRLNLRQNKLQGEIPEELGN--LAELEMLWLQNNSLTGTIPSSIFSLS--SLLNLDLSLN 234
             LN    +    I + L N  +  L +   ++       P+    L   S+ +++L  +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
            F  I  ++    S LQ+L L+   LS ELP+ +   L +L+ L L  N F         
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISAS 322

Query: 295 NLTKLTDLYLDQNKLQGKI-PHEIGNLRKLEWLMLSHNKL--VGVVPAPIFNLSTLISLQ 351
           N   LT L +  N  + ++    + NL  L  L LSH+ +         + NLS L SL 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 352 LHNNSLSGSLPSSADVPLPNLEELFL 377
           L  N    SL + A    P LE L L
Sbjct: 383 LSYNEPL-SLKTEAFKECPQLELLDL 407

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (430), Expect = 3e-46
 Identities = 72/325 (22%), Positives = 126/325 (38%), Gaps = 29/325 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L+++  +L+  +PS L  LS+L+ L LS N F      S  N  SL  +    NT   EL
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 120 PPNFCNQMSNLESLFLKYNMFH--GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
                  + NL  L L ++           L +   L+ L+LS N       +      +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236
           L  L+L   +L+ +  +    NL  L++L L ++ L  +       L +L +L+L  N+F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 237 TGII---PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
                   +S+  L  L+ L LS   LS  +  +   +L  +  + L  N  + +  + +
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLE--------------------WLMLSHNKL 333
            +L  +  L L  N +   +P  +  L +                      W   +  KL
Sbjct: 521 SHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL 579

Query: 334 VGVVPAPIFNLSTLISLQLHNNSLS 358
                    N   L  ++L + +LS
Sbjct: 580 EDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (380), Expect = 2e-39
 Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 7/255 (2%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
           ++ E L   +N+      +T S    L  L L+             +  +L  L L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNL 247
           L       L     L+ L+     ++      + +  +L +L L  N+ + I        
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND-FSGAIPKEIGNLTKLTDLYLDQ 306
             L+ L   +N +   L     ++L     LSL +N      I     +      L    
Sbjct: 153 EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 307 NKLQGKIPHEIGN--LRKLEWLMLSHNKLVGVVPAPIFNLS--TLISLQLHNNSLSGSLP 362
            +    I   + N  ++ L            + PA    L   ++ S+ L  +    ++ 
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NIS 270

Query: 363 SSADVPLPNLEELFL 377
           S+       L+EL L
Sbjct: 271 SNTFHCFSGLQELDL 285

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (491), Expect = 7e-55
 Identities = 63/310 (20%), Positives = 104/310 (33%), Gaps = 14/310 (4%)

Query: 60  LNISGLNL-TGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
             ++ L+     I      L+++ +  L           S         +   N   FG+
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNC-KFGQ 318

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN--YFSGTIPKEIGNLT 176
            P      +  L      +    G    +      L  L LS N   F G   +     T
Sbjct: 319 FPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNN 235
            L  L+L  N +   +      L +LE L  Q+++L      S+F SL +L+ LD+S  +
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
                      LSSL+ L ++ N        +I   L +L  L L         P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNL-STLISLQLHN 354
           L+ L  L +  N            L  L+ L  S N ++      + +  S+L  L L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 355 NSLSGSLPSS 364
           N  + +    
Sbjct: 553 NDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (482), Expect = 1e-53
 Identities = 75/331 (22%), Positives = 115/331 (34%), Gaps = 22/331 (6%)

Query: 61  NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP 120
               LN    IP  L    S + LDLSFN        S F+   L  +  +   +     
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR 180
             + + +S+L +L L  N          S    L++L       +      IG+L  L  
Sbjct: 70  GAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 181 LNLRQNKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL----LNLDLSLNN 235
           LN+  N +Q  ++PE   NL  LE L L +N +     + +  L  +    L+LDLSLN 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE--- 292
              I P +   +  L KL L +N  S  +       L  L+   L + +F      E   
Sbjct: 189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 293 IGNLTKLTDLYLDQNKLQ------GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
              L  L +L +++ +L         I      L  +    L    +  V          
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFG 305

Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
              L+L N       P+     L  L     
Sbjct: 306 WQHLELVNCKFGQ-FPTLKLKSLKRLTFTSN 335

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (464), Expect = 4e-51
 Identities = 70/350 (20%), Positives = 114/350 (32%), Gaps = 36/350 (10%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIFNMSSL--------LSIYF 110
           L +     +  +    +  L+ L+   L    F        F+ S+L             
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFS----- 165
                + +   +  N ++N+ S  L             S     + L L +  F      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL 322

Query: 166 --------------GTIPKEIGNLTKLTRLNLRQNKLQ--GEIPEELGNLAELEMLWLQN 209
                         G       +L  L  L+L +N L   G   +       L+ L L  
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPANI 268
           N +  T+ S+   L  L +LD   +N   +   S+  +L +L  L +S            
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 269 GNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLM 327
              L SL+ L +  N F      +I   L  LT L L Q +L+   P    +L  L+ L 
Sbjct: 442 NG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 328 LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +SHN    +   P   L++L  L    N +  S          +L  L L
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  177 bits (451), Expect = 3e-49
 Identities = 67/350 (19%), Positives = 113/350 (32%), Gaps = 34/350 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++G  +        + LSSLQ L              I ++ +L  +   +N +    
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR----ELSLSSNYFSGTIPKEIGNL 175
            P + + ++NLE L L  N       + L    Q+      L LS N  +  I       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE 199

Query: 176 TKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNL----- 229
            +L +L LR N     + +  +  LA LE+  L             F  S+L  L     
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 230 ----DLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ--------- 276
                  L+ +   I      L+++    L    +      +       L+         
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 277 -------TLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKL--QGKIPHEIGNLRKLEWLM 327
                     L      G       +L  L  L L +N L  +G           L++L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 328 LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           LS N ++  + +    L  L  L   +++L      S  + L NL  L +
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  176 bits (448), Expect = 8e-49
 Identities = 63/312 (20%), Positives = 104/312 (33%), Gaps = 17/312 (5%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
            ++  + +        +     Q L+L    F       + ++  L          F E+
Sbjct: 287 FSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 120 PPNFCNQMSNLESLFLKYNM--FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
                  + +LE L L  N   F G    +      L+ L LS N    T+      L +
Sbjct: 345 ------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236
           L  L+ + + L+         +L  L  L + +             LSSL  L ++ N+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 237 TG-IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
               +P     L +L  L LS  QL    P    + L SLQ L++  N+F          
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNL-RKLEWLMLSHNKLVGVVPAPIF--NLSTLISLQL 352
           L  L  L    N +      E+ +    L +L L+ N          F   +     L +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 353 HNNSLSGSLPSS 364
               +  + PS 
Sbjct: 577 EVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  134 bits (338), Expect = 7e-34
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 4/193 (2%)

Query: 60  LNISGLNLTGTIP-SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           L+    NL      S   +L +L  LD+S      +       +SSL  +    N+    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
             P+   ++ NL  L L         P+  +S   L+ L++S N F          L  L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 179 TRLNLRQNKLQGEIPEELGNLAE-LEMLWLQNNSLTGTIPSSIFS--LSSLLNLDLSLNN 235
             L+   N +     +EL +    L  L L  N    T     F   +     L + +  
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

Query: 236 FTGIIPSSIGNLS 248
                PS    + 
Sbjct: 581 MECATPSDKQGMP 593

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  181 bits (461), Expect = 1e-50
 Identities = 64/302 (21%), Positives = 99/302 (32%), Gaps = 12/302 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
             ++  N       +   L+++ A+ L+           +       S+         + 
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRC-QLKQF 322

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK--EIGNLTK 177
           P      +  L+SL L  N   G I     +   L  L LS N  S +            
Sbjct: 323 PTLD---LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNF 236
           L  L+L  N     +      L EL+ L  Q+++L      S F SL  LL LD+S  N 
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL 296
                     L+SL  L ++ N       +N+  N  +L  L L               L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS 356
            +L  L +  N L          L  L  L  S N++            +L    L NNS
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 357 LS 358
           ++
Sbjct: 557 VA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  168 bits (427), Expect = 7e-46
 Identities = 67/331 (20%), Positives = 113/331 (34%), Gaps = 24/331 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
                  L+  +P ++   SS + +DLSFN        S  N S L  +  +   +   +
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-I 71

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                + + +L +L L  N      P + S    L  L       +      IG L  L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 180 RLNLRQNKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLS----SLLNLDLSLN 234
           +LN+  N +   ++P    NL  L  + L  N +     + +  L       L+LD+SLN
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAI----- 289
               I   +   +  L +L L  N  S  +      NL  L    L + +F         
Sbjct: 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 290 -PKEIGNLTKLT--DLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
            P  +  L  +T  +  L           +   L  +  + L+   +  +    +     
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFK 308

Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             SL +    L    P+     LP L+ L L
Sbjct: 309 WQSLSIIRCQLK-QFPTL---DLPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 3e-44
 Identities = 71/330 (21%), Positives = 111/330 (33%), Gaps = 22/330 (6%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIFNMS--------SLLSIYF 110
           L + G   +  I    L NL+ L    L    F       IF  S        ++     
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK 170
                F +    F   ++N+ ++ L       K    +    + + LS+           
Sbjct: 269 TYTNDFSDDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF--- 322

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSS--IFSLSSLLN 228
              +L  L  L L  NK    I  +   L  L  L L  N+L+ +   S      +SL +
Sbjct: 323 PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           LDLS N    I+ ++   L  LQ L    + L      +   +L  L  L +   +    
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
                  LT L  L +  N  +      +  N   L +L LS  +L  +       L  L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 348 ISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             L + +N+L   L SS    L +L  L  
Sbjct: 500 QLLNMSHNNLL-FLDSSHYNQLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (412), Expect = 6e-44
 Identities = 68/331 (20%), Positives = 117/331 (35%), Gaps = 23/331 (6%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           +++S   L        +N S LQ LDLS          +   +  L ++    N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSF 95

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKL 178
            P   + +++LE+L              +     L++L+++ N+     +P    NLT L
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEM----LWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234
             ++L  N +Q     +L  L E       L +  N +   I    F    L  L L  N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGN 214

Query: 235 NFTG-IIPSSIGNLSSLQKLYLSDNQLSGE-----LPANIGNNLPSLQT--LSLYVNDFS 286
             +  I+ + + NL+ L    L   +   E        +I   L  +      L   +  
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
                +   L  ++ + L    +  K   ++    K + L +   +L      P  +L  
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPF 329

Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L SL L  N  S S    A   LP+L  L L
Sbjct: 330 LKSLTLTMNKGSISFKKVA---LPSLSYLDL 357

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  161 bits (410), Expect = 1e-43
 Identities = 71/351 (20%), Positives = 120/351 (34%), Gaps = 37/351 (10%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++G  +    P   + L+SL+ L              I  + +L  +   +N +    
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR----ELSLSSNYFSGTIPKEIGNL 175
            P + + ++NL  + L YN       + L   ++       L +S N     I  +    
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203

Query: 176 TKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFSLS--------SL 226
            KL  L LR N     I +  L NLA L +  L            IF  S        ++
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG------------------ELPANI 268
               L+  N           L+++  + L+   +                    +L    
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 269 GNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH--EIGNLRKLEWL 326
             +LP L++L+L +N  S  I  +   L  L+ L L +N L               L  L
Sbjct: 324 TLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 327 MLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            LS N  + ++ A    L  L  L   +++L      SA + L  L  L +
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (399), Expect = 4e-42
 Identities = 60/332 (18%), Positives = 109/332 (32%), Gaps = 23/332 (6%)

Query: 60  LNISGLNLTGTIPSELANLSSLQA----LDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
           +++S   +     ++L  L         LD+S N     I    F    L  +    N  
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFN 216

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCK--------QLRELSLSSNYFSGT 167
              +       ++ L    L    F  +    +             + E  L+       
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLL 227
              +   L  ++ ++L    +  +  E++    + + L +    L          L  L 
Sbjct: 277 DIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLK 331

Query: 228 NLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN-NLPSLQTLSLYVNDFS 286
           +L L++N  +  I      L SL  L LS N LS     +  +    SL+ L L  N   
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS 345
             +      L +L  L    + L+         +L KL +L +S+             L+
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 346 TLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +L +L++  NS   +  S+      NL  L L
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  143 bits (362), Expect = 4e-37
 Identities = 52/271 (19%), Positives = 87/271 (32%), Gaps = 16/271 (5%)

Query: 117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT 176
           G L P          +          K+P  + S    + + LS N           N +
Sbjct: 2   GSLNPCIEV--VPNITYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236
           +L  L+L + +++    +    L  L  L L  N +    P S   L+SL NL       
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL 296
             +    IG L +L+KL ++ N +         +NL +L  + L  N        ++  L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 297 TKLTD----LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQ 351
            +       L +  N +   I  +     KL  L L  N     +      NL+ L   +
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 352 LHNNSLSG-----SLPSSADVPLPNLEELFL 377
           L                S    L ++     
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  167 bits (426), Expect = 7e-48
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 23/299 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           LN++G  +T   P  L+NL  L  L +  N    +  S++ N+++L  +Y N + +    
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD-- 124

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                N ++ + SL L  N       S LS+   L  L+++ +      P  I NLT L 
Sbjct: 125 ISPLAN-LTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L+L  N+++   P  L +L  L       N +T   P  + +++ L +L +  N  T +
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  + NLS L  L +  NQ+S      + + L  L+ L++  N  S      + NL++L
Sbjct: 237 SP--LANLSQLTWLEIGTNQISD--INAVKD-LTKLKMLNVGSNQISD--ISVLNNLSQL 289

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
             L+L+ N+L  +    IG L  L  L LS N +  +   P+ +LS + S    N  + 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  165 bits (419), Expect = 7e-47
 Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 26/318 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++G  +       +  L++L+ L+L+ N      P  + N+  L ++Y   N +    
Sbjct: 49  LVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TD 102

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                N ++NL  L+L  +      P  L++  ++  L+L +N+   +    + N+T L 
Sbjct: 103 ISALQN-LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLN 158

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L + ++K++      + NL +L  L L  N +    P  + SL+SL      +N  T I
Sbjct: 159 YLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  + N++ L  L + +N+++    + + N L  L  L +  N  S      + +LTKL
Sbjct: 215 TP--VANMTRLNSLKIGNNKITD--LSPLAN-LSQLTWLEIGTNQISD--INAVKDLTKL 267

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
             L +  N++       + NL +L  L L++N+L       I  L+ L +L L  N ++ 
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 360 SLPSSADVPLPNLEELFL 377
             P +    L  ++    
Sbjct: 326 IRPLA---SLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  160 bits (406), Expect = 6e-45
 Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 26/318 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
             +   ++T  +      L S+  L ++      +    I  +++L  +  N N +  ++
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI-TDI 81

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
            P   + +  L +L++  N       S L +   LREL L+ +  S   P  + NLTK+ 
Sbjct: 82  SPL--SNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMY 135

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            LNL  N         L N+  L  L +  + +    P  I +L+ L +L L+ N    I
Sbjct: 136 SLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  + +L+SL       NQ++   P     N+  L +L +  N  +   P  + NL++L
Sbjct: 193 SP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
           T L +  N++     + + +L KL+ L +  N++  +  + + NLS L SL L+NN L  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG- 300

Query: 360 SLPSSADVPLPNLEELFL 377
           +        L NL  LFL
Sbjct: 301 NEDMEVIGGLTNLTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (387), Expect = 3e-42
 Identities = 73/318 (22%), Positives = 130/318 (40%), Gaps = 28/318 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L      +    P   A+L+      L        +      + S+  +      +   +
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-ASI 59

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                  ++NLE L L  N      P  LS+  +L  L + +N    T    + NLT L 
Sbjct: 60  QGI--EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L L ++ +       L NL ++  L L  N    +  S + +++ L  L ++ +    +
Sbjct: 114 ELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  I NL+ L  L L+ NQ+     + +  +L SL   + YVN  +   P  + N+T+L
Sbjct: 171 TP--IANLTDLYSLSLNYNQIED--ISPLA-SLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
             L +  NK+    P  + NL +L WL +  N++  +    + +L+ L  L + +N +S 
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS- 278

Query: 360 SLPSSADVPLPNLEELFL 377
            +    +  L  L  LFL
Sbjct: 279 DISVLNN--LSQLNSLFL 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (271), Expect = 4e-26
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 17/200 (8%)

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237
              L      +    P    +LAE     LQ  S+T  +      L S+  L ++     
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
            I    I  L++L+ L L+ NQ++   P    +NL  L  L +  N  +      + NLT
Sbjct: 58  SI--QGIEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
            L +LYL+++ +    P  + NL K+  L L  N  +    +P+ N++ L  L +  + +
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKV 167

Query: 358 SGSLPSSADVPLPNLEELFL 377
               P +    L +L  L L
Sbjct: 168 KDVTPIAN---LTDLYSLSL 184

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  163 bits (415), Expect = 1e-46
 Identities = 59/284 (20%), Positives = 108/284 (38%), Gaps = 15/284 (5%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
           +I     N +        +++L  +   +      N++ L L  N       + L+   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
           L  L+LSSN        ++ +L+ L  L+L  N +Q     EL     +E L   NN+++
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
             +  S        N+ L+ N  T +     G  S +Q L L  N++     A +  +  
Sbjct: 113 -RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
           +L+ L+L  N     +  ++    KL  L L  NKL   +  E  +   + W+ L +NKL
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           V ++   +     L    L  N                ++ +  
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (289), Expect = 9e-29
 Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 16/244 (6%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           LN+S   L      +L +LS+L+ LDL+ N+        +    S+ +++  NN +   +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRV 114

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKL 178
             +        ++++L  N              +++ L L  N        +   +   L
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
             LNL+ N +  ++  ++   A+L+ L L +N L   +     S + +  + L  N    
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
           +I  ++    +L+   L  N        +  +    +QT++           +E   +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 299 LTDL 302
           L   
Sbjct: 288 LGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 9/221 (4%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L+ +  N++  +          + + L+ N             S +  +    N +    
Sbjct: 104 LHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                     LE L L+YN  +  +        +L+ L LSSN  +  +  E  +   +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            ++LR NKL   I + L     LE   L+ N          F   +     ++       
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK- 274

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSL 280
           +        ++  L         +LPA   + L +L     
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  167 bits (424), Expect = 2e-46
 Identities = 68/304 (22%), Positives = 124/304 (40%), Gaps = 12/304 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++    +      E A+   L+ L+L+ N    ++    F N+ +L ++   +N L   
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRL-KL 94

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
           +P      +SNL  L +  N     +         L+ L +  N     I       L  
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNS 153

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN 235
           L +L L +  L   IP E L +L  L +L L++ ++   I    F  L  L  L++S   
Sbjct: 154 LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWP 211

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-G 294
           +   +  +     +L  L ++   L+  +P     +L  L+ L+L  N  S  I   +  
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH 269

Query: 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN 354
            L +L ++ L   +L    P+    L  L  L +S N+L  +  +   ++  L +L L +
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 355 NSLS 358
           N L+
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  161 bits (410), Expect = 2e-44
 Identities = 79/334 (23%), Positives = 127/334 (38%), Gaps = 19/334 (5%)

Query: 49  TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLS 107
            C  +   V             +P  +   +  + LDL  N    ++    F +   L  
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRI-KTLNQDEFASFPHLEE 60

Query: 108 IYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT 167
           +  N N +   + P   N + NL +L L+ N          +    L +L +S N     
Sbjct: 61  LELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 168 IPKEI-GNLTKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LS 224
           +   +  +L  L  L +  N L   I       L  LE L L+  +LT +IP+   S L 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
            L+ L L   N   I   S   L  L+ L +S       +  N    L +L +LS+   +
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCN 235

Query: 285 FSGAIPKE-IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN 343
            + A+P   + +L  L  L L  N +       +  L +L+ + L   +L  V P     
Sbjct: 236 LT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 344 LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L+ L  L +  N L+ +L  S    + NLE L L
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLIL 327

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 2e-42
 Identities = 91/314 (28%), Positives = 146/314 (46%), Gaps = 28/314 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +    +T   P  L NL++L  L+LS N    S  S++  ++SL  + F N       
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD--- 169

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                N ++ LE L +  N       S L+    L  L  ++N  S   P  +G LT L 
Sbjct: 170 LKPLAN-LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 224

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L+L  N+L+      L +L  L  L L NN ++   P  +  L+ L  L L  N  + I
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  +  L++L  L L++NQL    P    +NL +L  L+LY N+ S   P  + +LTKL
Sbjct: 281 SP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
             L+   NK+       + NL  + WL   HN++  +   P+ NL+ +  L L++ + + 
Sbjct: 334 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTN 389

Query: 360 SLPSS-ADVPLPNL 372
           +  +  A+V +PN 
Sbjct: 390 APVNYKANVSIPNT 403

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (389), Expect = 1e-41
 Identities = 90/318 (28%), Positives = 140/318 (44%), Gaps = 30/318 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L    L +       +  L++L  ++ S N      P  + N++ L+ I  NNN +    
Sbjct: 51  LQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-- 104

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                N ++NL  L L  N         L +   L  L LSSN  S      +  LT L 
Sbjct: 105 ITPLAN-LTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQ 159

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
           +L+           + L NL  LE L + +N ++    S +  L++L +L  + N  + I
Sbjct: 160 QLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  +G L++L +L L+ NQL       +  +L +L  L L  N  S   P  +  LTKL
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD--IGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
           T+L L  N++    P  +  L  L  L L+ N+L  +  +PI NL  L  L L+ N++S 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD 323

Query: 360 SLPSSADVPLPNLEELFL 377
             P S+   L  L+ LF 
Sbjct: 324 ISPVSS---LTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (387), Expect = 3e-41
 Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 29/322 (9%)

Query: 56  RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
            + +  I+       I +    L+      L       ++     ++  + ++  +   +
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL 175
             +        ++NL  +    N      P  L +  +L ++ +++N  +   P  + NL
Sbjct: 59  --KSIDGVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
           T LT L L  N++    P  L NL  L  L L +N+++    S++  L+SL  L    N 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQ 166

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
            T + P  + NL++L++L +S N++S    + +   L +L++L    N  S   P  +G 
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQISDITP--LGI 219

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
           LT L +L L+ N+L+      + +L  L  L L++N++  +  AP+  L+ L  L+L  N
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGAN 275

Query: 356 SLSGSLPSSADVPLPNLEELFL 377
            +S   P +    L  L  L L
Sbjct: 276 QISNISPLA---GLTALTNLEL 294

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 4e-41
 Identities = 93/318 (29%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           +N S   LT   P  L NL+ L  + ++ N    +  + + N+++L  +   NN +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD-- 126

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                N ++NL  L L  N       S LS    L++LS  +     T  K + NLT L 
Sbjct: 127 IDPLKN-LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ---VTDLKPLANLTTLE 180

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
           RL++  NK+       L  L  LE L   NN ++   P  +  L++L  L L+ N    I
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI 236

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
              ++ +L++L  L L++NQ+S   P    + L  L  L L  N  S   P  +  LT L
Sbjct: 237 --GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTAL 289

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
           T+L L++N+L+   P  I NL+ L +L L  N +  +  +P+ +L+ L  L  +NN +S 
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVS- 344

Query: 360 SLPSSADVPLPNLEELFL 377
            + S A+  L N+  L  
Sbjct: 345 DVSSLAN--LTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (368), Expect = 1e-38
 Identities = 78/299 (26%), Positives = 125/299 (41%), Gaps = 25/299 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +S   ++    S L+ L+SLQ L         +    + N+++L  +  ++N +    
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSD-- 191

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                  ++NLESL    N      P  L     L ELSL+ N         + +LT LT
Sbjct: 192 ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L+L  N++    P  L  L +L  L L  N ++   P  +  L++L NL+L+ N    I
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  I NL +L  L L  N +S   P +   +L  LQ L  Y N  S      + NLT +
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
             L    N++    P  + NL ++  L L+             N+S   +++    +L 
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (313), Expect = 5e-31
 Identities = 58/282 (20%), Positives = 105/282 (37%), Gaps = 21/282 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L  +   ++   P  L  L++L  L L+ N        ++ ++++L  +   NN +    
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN-- 257

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                  ++ L  L L  N      P  L+    L  L L+ N      P  I NL  LT
Sbjct: 258 LAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L L  N +    P  + +L +L+ L+  NN ++    SS+ +L+++  L    N  + +
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P  + NL+ + +L L+D   +   P N   N+    T+           P  I +    
Sbjct: 369 TP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALI--APATISDGGSY 423

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI 341
           T+  +  N              +   +        G V  P+
Sbjct: 424 TEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  153 bits (387), Expect = 4e-41
 Identities = 59/307 (19%), Positives = 108/307 (35%), Gaps = 39/307 (12%)

Query: 71  IPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNL 130
           I     N +  +   ++ +                            +   +      N+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS-------------------------LKQALASLRQSAWNV 36

Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
           + L L  N       + L+   +L  L+LSSN    T+   + +L+ L  L+L  N +Q 
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ- 93

Query: 191 EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSL 250
               EL     +E L   NN+++  +  S        N+ L+ N  T +     G  S +
Sbjct: 94  ----ELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
           Q L L  N++     A +  +  +L+ L+L  N     +  ++    KL  L L  NKL 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP 370
             +  E  +   + W+ L +NKLV ++   +     L    L  N               
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 371 NLEELFL 377
            ++ +  
Sbjct: 263 RVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 5e-30
 Identities = 46/302 (15%), Positives = 92/302 (30%), Gaps = 13/302 (4%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L+ +  N++  +          + + L+ N             S +  +    N +    
Sbjct: 104 LHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                     LE L L+YN  +  +        +L+ L LSSN  +  +  E  +   +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            ++LR NKL   I + L     LE   L+ N          FS +  +   ++      +
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQTVKKL 275

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG----AIPKEIGN 295
              +    +     +        +LPA   + L +L+     +    G     +  E  N
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
             +  ++   + + +  I       +    L      L   V       + L        
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

Query: 356 SL 357
             
Sbjct: 395 GQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.4 bits (206), Expect = 3e-17
 Identities = 38/278 (13%), Positives = 77/278 (27%), Gaps = 11/278 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           LN+    +   +  +    + L+ LDLS N     +     + + +  I   NN L   +
Sbjct: 174 LNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-VLI 229

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                    NLE   L+ N FH        S K  R  +++         +     T  T
Sbjct: 230 EKALRF-SQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG----TIPSSIFSLSSLLNLDLSLNN 235
             +      +         L  L+       S  G     +     + +    +D     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
           +  +I        +   L      L  ++      +     TL   V         E  +
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
             +L    + + +    +  +      +    +  +K 
Sbjct: 408 PLQLLRAIVKRYEEM-YVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
           AI +   N  +     +  + L+  +     +   ++ L LS N L  +  A +   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 348 ISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             L L +N L  +L       L  L  L L
Sbjct: 61  ELLNLSSNVLYETLDLE---SLSTLRTLDL 87

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  149 bits (378), Expect = 1e-40
 Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 39/339 (11%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           ++I           E   L++ + +    +     +P+++  +   +  +  N+  +  E
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQI-EE 83

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
           +          ++ L++ +N      P    +   L  L L  N  S ++P+ I  N  K
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 142

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-------------- 222
           LT L++  N L+  I ++       L+ L L +N LT  +  S+                
Sbjct: 143 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST 200

Query: 223 ---LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS 279
                ++  LD S N+   +          L  L L  N L+ +    +  N P L  + 
Sbjct: 201 LAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLT-DTAWLL--NYPGLVEVD 254

Query: 280 LYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP 338
           L  N+    I       + +L  LY+  N+L   +      +  L+ L LSHN L+  V 
Sbjct: 255 LSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 339 APIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
                   L +L L +NS+  +L  S       L+ L L
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLKLST---HHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (346), Expect = 4e-36
 Identities = 66/325 (20%), Positives = 116/325 (35%), Gaps = 40/325 (12%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           LN++ L +        A   ++Q L + FN     +P  +F N+  L  +    N L   
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SS 131

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
           LP    +    L +L +  N        T  +   L+ L LSSN  +  +   +  +  L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS---------------- 222
              N+  N L       L     +E L   +NS+   +   +                  
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTA 242

Query: 223 ----LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTL 278
                  L+ +DLS N    I+      +  L++LY+S+N+L   L       +P+L+ L
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVL 300

Query: 279 SLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP 338
            L  N     + +      +L +LYLD N +   +   +     L+ L LSHN       
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSL 356

Query: 339 APIFNLSTLISLQLHNNSLSGSLPS 363
             +F    +    + +      +  
Sbjct: 357 RALF--RNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 6e-31
 Identities = 49/256 (19%), Positives = 102/256 (39%), Gaps = 24/256 (9%)

Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNL 183
               ++       +++ G    TL++    + ++  ++     +P  +  +  ++  LNL
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNN---QKIVTFKNSTMR-KLPAALLDSFRQVELLNL 76

Query: 184 RQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIP 241
              +++ EI          ++ L++  N++   +P  +F  +  L  L L  N+ + +  
Sbjct: 77  NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD 301
               N   L  L +S+N L   +  +      SLQ L L  N  +  +   +  +  L  
Sbjct: 135 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 302 LYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL 361
             +  N L       +     +E L  SHN +  VV  P+     L  L+L +N+L+   
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLT--- 239

Query: 362 PSSADVPLPNLEELFL 377
            ++  +  P L E+ L
Sbjct: 240 DTAWLLNYPGLVEVDL 255

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 4e-30
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           I S L       ++ +           E   L     +  + + ++      L +  ++E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 204 MLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
           +L L +  +   I +  F+   ++  L +  N    + P    N+  L  L L  N LS 
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEIGNLR 321
            LP  I +N P L TLS+  N+    I  +     T L +L L  N+L   +   +  + 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 322 KLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            L    +S+N L     + +     +  L   +NS++  +          L  L L
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKL 233

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  148 bits (376), Expect = 8e-40
 Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 12/260 (4%)

Query: 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR 180
           P+ C+  +    +         ++P  + S    R L+L  N           +L  L  
Sbjct: 47  PSVCSCSNQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEV 103

Query: 181 LNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTG 238
           L L +N ++ +I       LA L  L L +N LT  IPS  F  LS L  L L  N    
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES 161

Query: 239 IIPSSIGNLSSLQKLYLSD-NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
           I   +   + SL +L L +  +L   +       L +L+ L+L + +    +P  +  L 
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
            L +L +  N      P     L  L+ L + ++++  +       L++L+ L L +N+L
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 358 SGSLPSSADVPLPNLEELFL 377
           S SLP     PL  L EL L
Sbjct: 279 S-SLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  136 bits (345), Expect = 2e-35
 Identities = 67/259 (25%), Positives = 97/259 (37%), Gaps = 14/259 (5%)

Query: 103 SSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN 162
           +    +      L  E+P       SN   L L  N        T      L  L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 163 YFSGTIPKEI-GNLTKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSI 220
                I       L  L  L L  N L   IP      L++L  LWL+NN +  +IPS  
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 221 FS-LSSLLNLDLS-LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTL 278
           F+ + SL+ LDL  L     I   +   L +L+ L L    +  ++P      L  L+ L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEEL 223

Query: 279 SLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP 338
            +  N F    P     L+ L  L++  +++     +    L  L  L L+HN L  +  
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 339 APIFNLSTLISLQLHNNSL 357
                L  L+ L LH+N  
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  122 bits (308), Expect = 1e-30
 Identities = 59/227 (25%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           LN+   N+         +L  L+ L L  N     I    F  ++SL ++   +N L   
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWL-TV 137

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
           +P      +S L  L+L+ N          +    L  L L        I +     L  
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNF 236
           L  LNL    ++ ++P  L  L  LE L +  N     I    F  LSSL  L +  +  
Sbjct: 198 LKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV 254

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
           + I  ++   L+SL +L L+ N LS  LP ++   L  L  L L+ N
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 10/205 (4%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFG 117
           L +   ++   I       L+SL  L+L  NW    IPS  F  +S L  ++  NN +  
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPI-E 160

Query: 118 ELPPNFCNQMSNLESLFL-KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT 176
            +P    N++ +L  L L +                 L+ L+L        +P  +  L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN 235
            L  L +  N      P     L+ L+ LW+ N+ ++  I  + F  L+SL+ L+L+ NN
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQL 260
            + +       L  L +L+L  N  
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307
           +   K+  +   LS E+P  I     + + L+L  N+          +L  L  L L +N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
            ++         L  L  L L  N L  +       LS L  L L NN +  S+PS A  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 368 PLPNLEELFLWEYGR 382
            +P+L  L L E  +
Sbjct: 169 RVPSLMRLDLGELKK 183

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L +SG +     P     LSSL+ L +  +     I  + F  ++SL+ +   +N L   
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNL-SS 280

Query: 119 LPPNFCNQMSNLESLFLKYNMFH 141
           LP +    +  L  L L +N ++
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  144 bits (365), Expect = 3e-39
 Identities = 70/309 (22%), Positives = 122/309 (39%), Gaps = 26/309 (8%)

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFG 117
            +  S L L   +P +L        LDL  N     I    F N+ +L ++   NN +  
Sbjct: 35  VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKI-S 89

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLT 176
           ++ P     +  LE L+L  N    ++P  +   K L+EL +  N  +  + K +   L 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLN 145

Query: 177 KLTRLNLRQNKLQ-GEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234
           ++  + L  N L+   I       + +L  + + + ++T TIP  +    SL  L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGN 202

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG 294
             T +  +S+  L++L KL LS N +S  +      N P L+ L L  N     +P  + 
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 295 NLTKLTDLYLDQNKLQG------KIPHEIGNLRKLEWLMLSHNKL-VGVVPAPIF-NLST 346
           +   +  +YL  N +          P           + L  N +    +    F  +  
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 347 LISLQLHNN 355
             ++QL N 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  133 bits (337), Expect = 2e-35
 Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 13/236 (5%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           +P  L        L L +N  +     +  NL  L  L L  NK+    P     L +LE
Sbjct: 46  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103

Query: 204 MLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL-SG 262
            L+L  N L   +P  +    +L  L +  N  T +  S    L+ +  + L  N L S 
Sbjct: 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLR 321
            +       +  L  + +   + +  IP+  G    LT+L+LD NK+  K+       L 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLN 216

Query: 322 KLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            L  L LS N +  V    + N   L  L L+NN L   +P         ++ ++L
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  121 bits (306), Expect = 4e-31
 Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 35/279 (12%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +    ++   P   A L  L+ L LS N     +P  +    +L  +  + N +  ++
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KV 136

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKI--PSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
             +  N ++ +  + L  N               K+L  + ++    + TIP+  G    
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS 193

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN 235
           LT L+L  NK+  ++    L  L  L  L L  NS++  + +   +    L  L L+ N 
Sbjct: 194 LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK 251

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
               +P  + +   +Q +YL +N +S                 ++  NDF    P     
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS-----------------AIGSNDFCP--PGYNTK 291

Query: 296 LTKLTDLYLDQNKLQ-GKIPHEI-GNLRKLEWLMLSHNK 332
               + + L  N +Q  +I       +     + L + K
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (275), Expect = 8e-27
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNF 236
           L  +      L+ ++P++L    +  +L LQNN +T  I    F  L +L  L L  N  
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GN 295
           + I P +   L  L++LYLS NQL  ELP  +     +LQ L ++ N+ +  + K +   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEIT-KVRKSVFNG 143

Query: 296 LTKLTDLYLDQNKLQ-GKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353
           L ++  + L  N L+   I +     ++KL ++ ++   +  +   P     +L  L L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLD 200

Query: 354 NNSLSGSLPSSADVPLPNLEELFL 377
            N ++  + +++   L NL +L L
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGL 223

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  144 bits (365), Expect = 2e-38
 Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 12/260 (4%)

Query: 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR 180
           P+ C+  +    +         ++P  +S+    R L+L  N           +L  L  
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 181 LNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTG 238
           L L +N ++  I       LA L  L L +N LT TIP+  F  LS L  L L  N    
Sbjct: 93  LQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES 150

Query: 239 IIPSSIGNLSSLQKLYLSD-NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
           I   +   + SL++L L +  +LS  +       L +L+ L+L + +    IP  +  L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
           KL +L L  N L    P     L  L+ L +  +++  +      NL +L+ + L +N+L
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 358 SGSLPSSADVPLPNLEELFL 377
           +  LP     PL +LE + L
Sbjct: 268 T-LLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  135 bits (341), Expect = 4e-35
 Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 10/234 (4%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
           +N   L L  N       ++    + L  L LS N+   TI       L  L  L L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 187 KLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLS-LNNFTGIIPSS 243
           +L   IP      L++L+ LWL+NN +  +IPS  F+ + SL  LDL  L   + I   +
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 244 IGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
              LS+L+ L L+   L  E+P      L  L  L L  N  S   P     L  L  L+
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
           + Q+++Q    +   NL+ L  + L+HN L  +       L  L  + LH+N  
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  123 bits (310), Expect = 7e-31
 Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           LN+    +     +   +L  L+ L LS N    +I    F  +++L ++   +N L   
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL-TT 126

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
           +P      +S L+ L+L+ N          +    LR L L        I +     L+ 
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNF 236
           L  LNL    L+ EIP  L  L +L+ L L  N L+  I    F  L  L  L +  +  
Sbjct: 187 LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI 243

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
             I  ++  NL SL ++ L+ N L+  LP ++   L  L+ + L+ N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 54/181 (29%), Positives = 77/181 (42%), Gaps = 10/181 (5%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFG 117
           L +    LT TIP+     LS L+ L L  N    SIPS  F  + SL  +         
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
            +       +SNL  L L       +IP  L+   +L EL LS N+ S   P     L  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNN 235
           L +L + Q+++Q  I      NL  L  + L +N+LT  +P  +F  L  L  + L  N 
Sbjct: 233 LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNP 290

Query: 236 F 236
           +
Sbjct: 291 W 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307
           +   K+      L  E+P  I     + + L+L+ N           +L  L  L L +N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
            ++         L  L  L L  N+L  +       LS L  L L NN +  S+PS A  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 368 PLPNLEELFLWEYGR 382
            +P+L  L L E  R
Sbjct: 158 RIPSLRRLDLGELKR 172

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++SG +L+   P     L  LQ L +  +     I  + F N+ SL+ I   +N L   
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNL-TL 269

Query: 119 LPPNFCNQMSNLESLFLKYNMFH 141
           LP +    + +LE + L +N ++
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (373), Expect = 4e-38
 Identities = 68/354 (19%), Positives = 121/354 (34%), Gaps = 34/354 (9%)

Query: 49  TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLS 107
           +C               NLT  +P     L++ + L LSFN+   ++ +S F  +  L  
Sbjct: 1   SCSFDGRIA---FYRFCNLT-QVPQ---VLNTTERLLLSFNYI-RTVTASSFPFLEQLQL 52

Query: 108 IYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT 167
           +   +      +       + NL  L L  +  +   P        L EL L     S  
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 168 I--PKEIGNLTKLTRLNLRQNKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLS 224
           +       NL  LTRL+L +N+++   +    G L  L+ +   +N +       +  L 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 225 --SLLNLDLSLNNFTGIIPSSIGNLS------SLQKLYLSDNQLSGELPANIGNNL---- 272
             +L    L+ N+    +    G          L+ L +S N  + ++  N  N +    
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 273 -------PSLQTLSLYVNDFSGAIPKEIGNLTK--LTDLYLDQNKLQGKIPHEIGNLRKL 323
                    +       ++           L +  +  L L    +          L+ L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 324 EWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           + L L++NK+  +     + L  L  L L  N L   L SS    LP +  + L
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDL 345

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 7e-35
 Identities = 73/316 (23%), Positives = 124/316 (39%), Gaps = 22/316 (6%)

Query: 52  VRSHRVAALNISGLNLTGTIPSELANL--SSLQALDLSFNWFYGSIPSSIF-NMSSLLSI 108
           + +H +        N+     +  A L  SS++ LDLS  + + S+ S +F  +  L  +
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVL 295

Query: 109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI 168
               N +  ++       + NL+ L L YN+      S      ++  + L  N+ +   
Sbjct: 296 NLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 169 PKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLN 228
            +    L KL  L+LR N L       +  +  +  ++L  N L  T+P    + + +  
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLI-- 406

Query: 229 LDLSLNNFTGI-IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
             LS N    + I   +  +  LQ L L+ N+ S        +  PSL+ L L  N    
Sbjct: 407 -HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 288 AIPKEI-----GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF 342
           A   E+       L+ L  LYL+ N L    P    +L  L  L L+ N+L  +      
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN--D 523

Query: 343 NLSTLISLQLHNNSLS 358
             + L  L +  N L 
Sbjct: 524 LPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (338), Expect = 1e-33
 Identities = 78/361 (21%), Positives = 118/361 (32%), Gaps = 45/361 (12%)

Query: 60  LNISGLNLTGTIPSELANLS--SLQALDLSFNWFYGSIPSSIFNMS------SLLSIYFN 111
           ++ S   +      EL  L   +L    L+ N  Y  +               L  +  +
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 112 NNTLFGELPPNFCNQ-----------MSNLESLFLKYNMFHGKIPSTLSSCKQ--LRELS 158
            N    ++  NF N              ++      ++       +T +   +  +R L 
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPS 218
           LS  +      +    L  L  LNL  NK+     E    L  L++L L  N L   + S
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYS 331

Query: 219 SIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ--------------LSGE 263
           S F  L  +  +DL  N+   I   +   L  LQ L L DN               LSG 
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391

Query: 264 LPANIGNNLPSLQTLSLYVNDFSG-AIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLR 321
               +     +   + L  N      I   +  +  L  L L+QN+       +      
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451

Query: 322 KLEWLMLSHNKLVGVVPAPI-----FNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELF 376
            LE L L  N L       +       LS L  L L++N L+ SLP      L  L  L 
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLS 510

Query: 377 L 377
           L
Sbjct: 511 L 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 2e-23
 Identities = 59/303 (19%), Positives = 107/303 (35%), Gaps = 43/303 (14%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           LN++   +          L +LQ L+LS+N       S+ + +  +  I    N +   +
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-II 353

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG------------- 166
                  +  L++L L+ N       +T+     + ++ LS N                 
Sbjct: 354 QDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 167 --------TIPKEIGNLTKLTRLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNSLTG--- 214
                    I   +  +  L  L L QN+      ++       LE L+L  N L     
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 215 -TIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL 272
             +   +F  LS L  L L+ N    + P    +L++L+ L L+ N+L+  L  N     
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND--LP 525

Query: 273 PSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNK 332
            +L+ L +  N      P        L+ L +  NK   +          + WL  ++  
Sbjct: 526 ANLEILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECE----LSTFINWLNHTNVT 578

Query: 333 LVG 335
           + G
Sbjct: 579 IAG 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLH 353
            L     L L  N ++         L +L+ L L        +    F NL  L  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 354 NNSLSGSLPSSADVPLPNLEELFLWE 379
           ++ +   L   A   L +L EL L+ 
Sbjct: 82  SSKIY-FLHPDAFQGLFHLFELRLYF 106

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (365), Expect = 1e-37
 Identities = 72/330 (21%), Positives = 118/330 (35%), Gaps = 21/330 (6%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYG-----SIPSSIFN---MSSLLSIYF 110
           L +     +  +    +  L+ L+   L    F           S        ++     
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK 170
                + +   +  N ++N+ S  L       ++    S     + L L +  F      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNFGWQHLELVNCKFGQFPT- 321

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT--GTIPSSIFSLSSLLN 228
               L  L RL    NK      E   +L  LE L L  N L+  G    S F  +SL  
Sbjct: 322 --LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           LDLS N     + S+   L  L+ L    + L      ++  +L +L  L +       A
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
                  L+ L  L +  N  Q     +I   LR L +L LS  +L  + P    +LS+L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 348 ISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             L + +N L  S+P      L +L++++L
Sbjct: 497 QVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (360), Expect = 6e-37
 Identities = 68/335 (20%), Positives = 106/335 (31%), Gaps = 28/335 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQA----LDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
           L++S   +     ++L  L  +      LDLS N     I    F    L  +   NN  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHG------KIPSTLSSCKQLRELSLSSNY---FSG 166
              +       ++ LE   L    F           S L     L        Y   +  
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEE--LGNLAELEMLWLQNNSLTGTIPSSIFSLS 224
            I      LT ++  +L    ++  + +         LE++  +              L 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPT------LKLK 325

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG-ELPANIGNNLPSLQTLSLYVN 283
           SL  L  + N           +L SL+ L LS N LS     +       SL+ L L  N
Sbjct: 326 SLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 284 DFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF 342
                +      L +L  L    + L+      +  +LR L +L +SH            
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 343 NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            LS+L  L++  NS   +        L NL  L L
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (357), Expect = 1e-36
 Identities = 71/305 (23%), Positives = 118/305 (38%), Gaps = 17/305 (5%)

Query: 66  NLTGTIPSELANLSSLQALDLSFN---WFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPN 122
           NL     S L  L +L   +       ++   I      ++++ S    + T+      +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 123 FCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLN 182
           +     +LE +  K+  F           K L+ L+ +SN       +   +L  L  L+
Sbjct: 302 YNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLD 353

Query: 183 LRQNKLQ--GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGII 240
           L +N L   G   +       L+ L L  N +  T+ S+   L  L +LD   +N   + 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 241 PSSI-GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTK 298
             S+  +L +L  L +S           I N L SL+ L +  N F      +I   L  
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
           LT L L Q +L+   P    +L  L+ L ++ N+L  V       L++L  + LH N   
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 359 GSLPS 363
            S P 
Sbjct: 532 CSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (333), Expect = 2e-33
 Identities = 70/332 (21%), Positives = 124/332 (37%), Gaps = 24/332 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++S   L         +   LQ LDLS          +  ++S L ++    N +   L
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSL 91

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYF-SGTIPKEIGNLTKL 178
                + +S+L+ L              +   K L+EL+++ N   S  +P+   NLT L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEM----LWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234
             L+L  NK+Q     +L  L ++ +    L L  N +   I    F    L  L L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN 210

Query: 235 NFTG-IIPSSIGNLSSLQKLYLSDNQLSG-----ELPANIGNNLPSLQTLSL---YVNDF 285
             +  ++ + I  L+ L+   L   +        +   +    L +L        Y++ +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 286 SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS 345
              I      LT ++   L    ++ ++     N    + L L + K       P   L 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-FGWQHLELVNCKFGQF---PTLKLK 325

Query: 346 TLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +L  L   +N       + ++V LP+LE L L
Sbjct: 326 SLKRLTFTSNKGGN---AFSEVDLPSLEFLDL 354

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (328), Expect = 1e-32
 Identities = 69/350 (19%), Positives = 117/350 (33%), Gaps = 34/350 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++G  +        + LSSLQ L              I ++ +L  +   +N +    
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR----ELSLSSNYFSGTIPKEIGNL 175
            P + + ++NLE L L  N       + L    Q+      L LS N  +  I       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 176 TKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTG-----TIPSSIFS---LSSL 226
            +L +L LR N     + +  +  LA LE+  L                S        ++
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 227 LNLDLS-LNNFTGIIPSSIGNLSSLQKLYLSDNQLSG-------------ELPANIGNNL 272
               L+ L+ +   I      L+++    L    +               EL        
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 273 PSLQTLSLYVNDFSGAIPKEIG---NLTKLTDLYLDQNKLQ--GKIPHEIGNLRKLEWLM 327
           P+L+  SL    F+           +L  L  L L +N L   G           L++L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 328 LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           LS N ++  + +    L  L  L   +++L      S  + L NL  L +
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (316), Expect = 4e-31
 Identities = 60/300 (20%), Positives = 102/300 (34%), Gaps = 20/300 (6%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
            IP ++   +  L + FN       L          L+ L L              S   
Sbjct: 21  KIPDNLPFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
           L  L L+ N            L+ L +L   +  L       +G+L  L+ L + +N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 214 GTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQ----KLYLSDNQLSGELPANI 268
                  FS L++L +LDLS N    I  + +  L  +      L LS N ++  +    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196

Query: 269 GNNLPSLQTLSLYVNDFSGAIPKE-IGNLTKLTDLYL------DQNKLQGKIPHEIGNLR 321
              +  L  L+L  N  S  + K  I  L  L    L      ++  L+      +  L 
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 322 KL--EWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
            L  E   L++          +F  L+ + S  L + ++      S +    +LE +   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (300), Expect = 5e-29
 Identities = 54/266 (20%), Positives = 91/266 (34%), Gaps = 16/266 (6%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
            + ++L L +N        +  S  +L+ L LS             +L+ L+ L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI-IPSSIGN 246
           +Q         L+ L+ L     +L       I  L +L  L+++ N      +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQ----TLSLYVNDFSGAIPKEIGNLTKLTDL 302
           L++L+ L LS N++   +       L  +     +L L +N  +  I        +L  L
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 303 YLDQNKLQGKIPHE-IGNLRKLEWLML------SHNKLVGVVPAPIFNLSTLISLQLHNN 355
            L  N     +    I  L  LE   L      +   L     + +  L  L   +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 356 SLSGSLPSSADV--PLPNLEELFLWE 379
            L   L    D+   L N+    L  
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVS 291

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 4/164 (2%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++S   +  T+ S    L  L+ LD   +        S+F ++ +L+ +  ++      
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RV 435

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
                 N +S+LE L +  N F         +  + L  L LS        P    +L+ 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221
           L  LN+  N+L+         L  L+ +WL  N    + P   +
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  144 bits (365), Expect = 1e-37
 Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 37/338 (10%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           ++I           E   L++ + +    +     +P+++  +   +  +  N+  +  E
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EE 89

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
           +          ++ L++ +N      P    +   L  L L  N  S ++P+ I  N  K
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-------------- 222
           LT L++  N L+  I ++       L+ L L +N LT  +  S+                
Sbjct: 149 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST 206

Query: 223 ---LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS 279
                ++  LD S N+   +          L  L L  N L+ +    +  N P L  + 
Sbjct: 207 LAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLT-DTAWLL--NYPGLVEVD 260

Query: 280 LYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPA 339
           L  N+    +      + +L  LY+  N+L   +      +  L+ L LSHN L+  V  
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318

Query: 340 PIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
                  L +L L +NS+  +L  S       L+ L L
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKLST---HHTLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (332), Expect = 3e-33
 Identities = 67/325 (20%), Positives = 118/325 (36%), Gaps = 42/325 (12%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFG 117
           LN++ L +   I +   A   ++Q L + FN     +P  +F N+  L  +    N L  
Sbjct: 80  LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-S 136

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
            LP    +    L +L +  N        T  +   L+ L LSSN  +  +   +  +  
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 193

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS--------------- 222
           L   N+  N L       L     +E L   +NS+   +   +                 
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDT 247

Query: 223 -----LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT 277
                   L+ +DLS N    I+      +  L++LY+S+N+L   L       +P+L+ 
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKV 305

Query: 278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVV 337
           L L  N     + +      +L +LYLD N +   +   +     L+ L LSHN      
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNS 361

Query: 338 PAPIFNLSTLISLQLHNNSLSGSLP 362
              +F    +    + +      + 
Sbjct: 362 LRALF--RNVARPAVDDADQHCKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 1e-27
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           I S L       ++ +           E   L     +  + + ++      L +  ++E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 204 MLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
           +L L +  +   I +  F+   ++  L +  N    + P    N+  L  L L  N LS 
Sbjct: 79  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 136

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEIGNLR 321
            LP  I +N P L TLS+  N+    I  +     T L +L L  N+L   +   +  + 
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 192

Query: 322 KLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            L    +S+N L     + +     +  L   +NS++  +          L  L L
Sbjct: 193 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (263), Expect = 3e-24
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 16/214 (7%)

Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSS 225
            I   +        +++           E   L   +++  +N+++   +P+++      
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 226 LLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF 285
           +  L+L+      I   +     ++QKLY+  N +   LP ++  N+P L  L L  ND 
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135

Query: 286 SGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFN 343
           S ++P+ I  N  KLT L +  N L+ +I  +       L+ L LS N+L  V    +  
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 190

Query: 344 LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           + +L    +  N LS +L          +EEL  
Sbjct: 191 IPSLFHANVSYNLLS-TLA-----IPIAVEELDA 218

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  137 bits (347), Expect = 8e-37
 Identities = 57/293 (19%), Positives = 112/293 (38%), Gaps = 21/293 (7%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
           ++P  I   ++LL +  N+     EL  +    + +L +L L  N          S  ++
Sbjct: 47  AVPKEISPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSL 212
           L++L +S N+    IP  +   + L  L +  N+++ ++P+     L  +  + +  N L
Sbjct: 104 LQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPL 159

Query: 213 TGT-IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNN 271
             +      F    L  L +S    TGI         +L +L+L  N++   +       
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQ-AIELEDLLR 215

Query: 272 LPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331
              L  L L  N         +  L  L +L+LD NKL  ++P  + +L+ L+ + L  N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 332 KLVGVVP------APIFNLSTLISLQLHNNSLS-GSLPSSADVPLPNLEELFL 377
            +  V              +    + L NN +    +  +    + +   +  
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (309), Expect = 2e-31
 Identities = 61/285 (21%), Positives = 105/285 (36%), Gaps = 24/285 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++   +++     +   L  L AL L  N     I    F  +  L  +Y + N L  E
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHL-VE 116

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN-YFSGTIPKEIGNLTK 177
           +PPN     S+L  L +  N          S  + +  + +  N   +        +  K
Sbjct: 117 IPPN---LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNF 236
           L  L + + KL   IP++L     L  L L +N +   I        S L  L L  N  
Sbjct: 174 LNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI--- 293
             I   S+  L +L++L+L +N+LS  +PA +  +L  LQ + L+ N+ +  +       
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNIT-KVGVNDFCP 286

Query: 294 ----GNLTKLTDLYLDQNKLQGKI--PHEIGNLRKLEWLMLSHNK 332
                       + L  N +      P     +     +   + K
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (258), Expect = 2e-24
 Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 16/203 (7%)

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNF 236
           L  +      L+  +P+E+    +  +L LQNN ++  +    F  L  L  L L  N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GN 295
           + I   +   L  LQKLY+S N L  E+P N+     SL  L ++ N     +PK +   
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIR-KVPKGVFSG 145

Query: 296 LTKLTDLYLDQNKLQ-GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN 354
           L  +  + +  N L+         +  KL +L +S  KL G+   P     TL  L L +
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI---PKDLPETLNELHLDH 202

Query: 355 NSLSGSLPSSADVPLPNLEELFL 377
           N +  ++     +    L  L L
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGL 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  136 bits (345), Expect = 1e-36
 Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 7/236 (2%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN--YFSGTIPKEIGNLTKLTRLNLRQ 185
           S+   L L+ N              QL +LSLSSN   F G   +     T L  L+L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 186 NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSI 244
           N +   +      L +LE L  Q+++L      S+F  L +L+ LD+S  +         
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLY 303
             LSSL+ L ++ N        +I   L +L  L L        +      +L+ L  L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLST-LISLQLHNNSLS 358
           +  N            L  L+ L  S N ++      + +  + L  L L  N  +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  133 bits (338), Expect = 1e-35
 Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 12/240 (5%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL--QGEIPEELGNLAE 201
           +P+ + S      L L SN            LT+LT+L+L  N L  +G   +       
Sbjct: 22  VPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 202 LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQL 260
           L+ L L  N +  T+ S+   L  L +LD   +N   +   S+  +L +L  L +S    
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 261 SGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-G 318
                  I N L SL+ L +  N F      +I   L  LT L L Q +L+ ++      
Sbjct: 139 R-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 319 NLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP-NLEELFL 377
           +L  L+ L +SHN    +   P   L++L  L    N +  +         P +L  L L
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  118 bits (297), Expect = 6e-30
 Identities = 58/234 (24%), Positives = 86/234 (36%), Gaps = 12/234 (5%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFY-GSIPSSIF-NMSSLLSIYFNNNTLFG 117
           L +    L          L+ L  L LS N        S      +SL  +  + N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I 91

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEI-GNL 175
            +  NF   +  LE L  +++        S   S + L  L +S  +        I   L
Sbjct: 92  TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGL 149

Query: 176 TKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSL 233
           + L  L +  N  Q     +    L  L  L L    L   +  + F+ LSSL  L++S 
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP-SLQTLSLYVNDFS 286
           NNF  +       L+SLQ L  S N +          + P SL  L+L  NDF+
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (267), Expect = 7e-26
 Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 205 LWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS-GE 263
           +   +  LT ++P+ I S  S   L+L  N    +       L+ L KL LS N LS   
Sbjct: 12  IRCNSKGLT-SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRK 322
             +       SL+ L L  N     +      L +L  L    + L+      +  +LR 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 323 LEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L +L +SH     V    IF  LS+L  L++  NS   +        L NL  L L
Sbjct: 128 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (357), Expect = 2e-36
 Identities = 63/317 (19%), Positives = 112/317 (35%), Gaps = 57/317 (17%)

Query: 74  ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133
                +    L++  +    ++P  +     + ++   +N L   LP         L +L
Sbjct: 35  RACLNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNL-TSLPALP----PELRTL 86

Query: 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP 193
            +  N     +P       +L   S         +P        L +L +  N+L   +P
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLT-SLP 137

Query: 194 EELGNLAELEM-----------------LWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236
                L EL +                 LW  NN LT ++P      S L  L +S N  
Sbjct: 138 VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQL 193

Query: 237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL 296
              +P+       L KL+  +N+L+  LPA        L+ L +  N  + ++P     L
Sbjct: 194 A-SLPTLPSE---LYKLWAYNNRLT-SLPALPSG----LKELIVSGNRLT-SLPVLPSEL 243

Query: 297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS 356
            +   L +  N+L   +P     L  L    +  N+L   +P  + +LS+  ++ L  N 
Sbjct: 244 KE---LMVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 357 LSGSLPSSADVPLPNLE 373
           LS      A   + +  
Sbjct: 296 LS-ERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (357), Expect = 2e-36
 Identities = 65/319 (20%), Positives = 117/319 (36%), Gaps = 43/319 (13%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L I   NLT ++P+    L +L   ++S N    S+P     +  L         L   L
Sbjct: 66  LVIPDNNLT-SLPALPPELRTL---EVSGNQLT-SLPVLPPGLLELSIFSNPLTHL-PAL 119

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
           P       S L  L++  N     +P        L+ELS+S N  + ++P     L KL 
Sbjct: 120 P-------SGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPSELCKL- 166

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
                 N+L   +P     L   + L + +N L  ++P+    L  L   +  L +    
Sbjct: 167 --WAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS---- 215

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
           +P+    L   ++L +S N+L+  LP         L+ L +  N  + ++P     L  L
Sbjct: 216 LPALPSGL---KELIVSGNRLT-SLPVLPSE----LKELMVSGNRLT-SLPMLPSGLLSL 266

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG 359
               + +N+L  ++P  + +L     + L  N L       +  +++             
Sbjct: 267 ---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 360 SLPSSADVPLPNLEELFLW 378
           +  S+             W
Sbjct: 323 AGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  123 bits (309), Expect = 4e-30
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 37/227 (16%)

Query: 151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
                 L++  +  + T+P  +     +T L +  N L   +P     L  LE   +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 211 SLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
            LT ++P     L  L      L +   +        S L KL++  NQL+  LP     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPG 142

Query: 271 NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH 330
               LQ LS+  N  + ++P     L K   L+   N+L   +P     L++L    +S 
Sbjct: 143 ----LQELSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQELS---VSD 190

Query: 331 NKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           N+L   +P      S L  L  +NN L+ SLP+        L+EL +
Sbjct: 191 NQLA-SLPT---LPSELYKLWAYNNRLT-SLPAL----PSGLKELIV 228

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 2e-26
 Identities = 70/311 (22%), Positives = 104/311 (33%), Gaps = 58/311 (18%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +SG  LT ++P     L  L             +P+    +  L  I+ N  T    L
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKL-WIFGNQLTSLPVL 139

Query: 120 PPN-------------FCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG 166
           PP                   S L  L+   N     +P   S    L+ELS+S N  + 
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA- 194

Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEM-----------------LWLQN 209
           ++P     L KL   N R   L    P     L EL +                 L +  
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSL----PALPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250

Query: 210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269
           N LT ++P      S LL+L +  N  T + P S+ +LSS   + L  N LS E      
Sbjct: 251 NRLT-SLPMLP---SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLS-ERTLQAL 304

Query: 270 NNLPSLQTLS---LYVNDFSGAIPKEIGNLTKLTDLYLDQNK----LQGKIPHEIGNLRK 322
             + S    S   +  +    + P+E   L      +L   +          H  G    
Sbjct: 305 REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

Query: 323 LEWLMLSHNKL 333
            +   L  ++L
Sbjct: 365 ADAFSLFLDRL 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  136 bits (344), Expect = 3e-35
 Identities = 63/319 (19%), Positives = 105/319 (32%), Gaps = 51/319 (15%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
                 NLT  +P E  N+ S      +++ +  + P        +      +       
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD---- 70

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                        L L        +P        L  L  S N  +  +P+   +L  L 
Sbjct: 71  --------RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 180 RLNLRQNKLQGEIPE---------------ELGNLAELEMLWLQNNSLTGTIPSSIFSLS 224
             N     L    P                EL N + L+++ + NNSL   +P       
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL---PP 173

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
           SL  +    N    +    + NL  L  +Y  +N L  +LP    +    L+++    N 
Sbjct: 174 SLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLS----LESIVAGNNI 226

Query: 285 FSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNL 344
                  E+ NL  LT +Y D N L+  +P    +L  L    +  N L  + P    +L
Sbjct: 227 LE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTDL-PELPQSL 279

Query: 345 STLISLQLHNNSLSGSLPS 363
           + L   +   + LS   P+
Sbjct: 280 TFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  127 bits (320), Expect = 4e-32
 Identities = 73/347 (21%), Positives = 129/347 (37%), Gaps = 64/347 (18%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L +S   L   +P EL N S L+ +D+  N     +P       SL  I   NN L  E 
Sbjct: 136 LGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQL--EE 187

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
            P   N +  L +++   N     +         L  +   +N        E+ NL  LT
Sbjct: 188 LPELQN-LPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLT 240

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            +    N L+  +P+   +L   E L +++N LT  +P    SL+ L   +   +  + +
Sbjct: 241 TIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSEL 295

Query: 240 IPS-------------SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286
            P+                   SL++L +S+N+L  ELPA        L+ L    N  +
Sbjct: 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA 350

Query: 287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLR----------------KLEWLMLSH 330
             +P+   NL +L   +++ N L+ + P    ++                  L+ L +  
Sbjct: 351 -EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 331 NKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           N L    P    ++     L++++  +       A      LE+   
Sbjct: 406 NPLR-EFPDIPESVE---DLRMNSERVV-DPYEFAHETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (309), Expect = 1e-30
 Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 55/282 (19%)

Query: 128 SNLESLFLKYNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL-------- 175
            N+ + FL+  + H     ++P    + K   E   + + +    P   G          
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 176 -----TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLD 230
                 +   L L    L   +PE   +   LE L    NSLT  +P    SL SLL  +
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 231 LSLNNFTGIIPS---------------SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL 275
            +L   + + P                 + N S L+ + + +N L  +LP    +  PSL
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP----DLPPSL 175

Query: 276 QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
           + ++   N     +P E+ NL  LT +Y D N L+ K+P    +L  +      +N L  
Sbjct: 176 EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNIL-- 227

Query: 336 VVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
                + NL  L ++   NN L  +LP       P+LE L +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNV 264

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (287), Expect = 1e-27
 Identities = 60/315 (19%), Positives = 109/315 (34%), Gaps = 55/315 (17%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           +      L   +P EL NL  L A+    N     +P    ++ S+      NN L  E 
Sbjct: 178 IAAGNNQLE-ELP-ELQNLPFLTAIYADNNSL-KKLPDLPLSLESI---VAGNNIL--EE 229

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
            P   N +  L +++   N+    +P    S   L  L++  NY +  +P+   +LT L 
Sbjct: 230 LPELQN-LPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLD 283

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
                 + L    P        L  L   +N +  ++        SL  L++S N     
Sbjct: 284 VSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDL---PPSLEELNVSNNKLI-E 331

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT-- 297
           +P+    L   ++L  S N L+ E+P    N    L+ L +  N      P    ++   
Sbjct: 332 LPALPPRL---ERLIASFNHLA-EVPELPQN----LKQLHVEYNPLR-EFPDIPESVEDL 382

Query: 298 --------------KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN 343
                          L  L+++ N L+ + P    ++  L    ++  ++V         
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHET 438

Query: 344 LSTLISLQLHNNSLS 358
              L      ++   
Sbjct: 439 TDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 34/199 (17%)

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS--- 248
           I     +   L+     +++LT  +P    ++ S      + + +    P   G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 249 ----------SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
                        +L L++  LS  LP    +    L++L    N  +  +P+   +L  
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQSLKS 115

Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
           L     +   L    P        LE+L +S+N+L  +    + N S L  + + NNSL 
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK 166

Query: 359 GSLPSSADVPLPNLEELFL 377
             LP       P+LE +  
Sbjct: 167 -KLPDL----PPSLEFIAA 180

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  134 bits (338), Expect = 1e-34
 Identities = 78/374 (20%), Positives = 132/374 (35%), Gaps = 62/374 (16%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           +++S  ++     +  + L  LQ L +        I ++ F  +SSL+ +  + N    +
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQ 93

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKI--PSTLSSCKQLRELSLSSNYFSGTIPKEI-GNL 175
           L     N ++NLE L L      G +   +       L  L L  N      P     N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 176 TKLTRLNLRQNKLQGEIPEELGNL----------------------------------AE 201
            +   L+L  NK++    E+L N                                     
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 202 LEMLWLQNNSLTGTIPSSIFSLSSLLNL-------------DLSLNNFTGIIPSSIGNL- 247
           +  L L  N    ++    F   +   +                  NF      +   L 
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 248 -SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLD 305
            S ++   LS +++   L  ++ ++   L+ L+L  N+ +  I       LT L  L L 
Sbjct: 274 ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 306 QNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPS 363
           QN L   I   +  NL KLE L LS+N +   +    F  L  L  L L  N L  S+P 
Sbjct: 332 QNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 364 SADVPLPNLEELFL 377
                L +L++++L
Sbjct: 389 GIFDRLTSLQKIWL 402

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  131 bits (332), Expect = 9e-34
 Identities = 66/346 (19%), Positives = 115/346 (33%), Gaps = 40/346 (11%)

Query: 63  SGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPP 121
               L   +P   A++     +DLS N     +  + F  +  L  +     T    +  
Sbjct: 18  INRGLH-QVPELPAHV---NYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRN 72

Query: 122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYF-SGTIPKEI-GNLTKLT 179
           N    +S+L  L L YN F        +    L  L+L+        +       LT L 
Sbjct: 73  NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 180 RLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNSLTGTIPSSIF-----------SLSSLL 227
            L LR N ++   P     N+    +L L  N +  +I                 LSS+ 
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSIT 191

Query: 228 NLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
             D++          +    +S+  L LS N     +     + +   +  SL +++   
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 288 AIPKEIGN--------------LTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNK 332
                                  + +    L ++K+   +   +  +   LE L L+ N+
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE 310

Query: 333 LVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +   +    F  L+ L+ L L  N L  S+ S     L  LE L L
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDL 354

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (301), Expect = 1e-29
 Identities = 71/329 (21%), Positives = 128/329 (38%), Gaps = 36/329 (10%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGS-IPSSIF-NMSSLLSIYFNNNTLF 116
           L +        + +     L++L+ L L+     G+ +  + F  ++SL  +   +N + 
Sbjct: 84  LKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSC--KQLRELSLSSNYFSGTIPKEIG- 173
              P +F   M     L L +N         L +   K    L LSS          +G 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 174 -------NLTKLTRLNLRQNKLQGEIPE---ELGNLAELEMLWLQNNSLTGT-------- 215
                    T +T L+L  N  +  + +   +     +++ L L N+   G+        
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 216 -IPSSIF---SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNN 271
              +  F     S +   DLS +    ++ S   + + L++L L+ N+++ ++  N    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG 321

Query: 272 LPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLS 329
           L  L  L+L  N    +I   +  NL KL  L L  N ++  +  +    L  L+ L L 
Sbjct: 322 LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379

Query: 330 HNKLVGVVPAPIF-NLSTLISLQLHNNSL 357
            N+L   VP  IF  L++L  + LH N  
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 40/159 (25%), Positives = 57/159 (35%), Gaps = 6/159 (3%)

Query: 224 SSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
           + +  +DLSLN+   +  +S   L  LQ L +        +  N    L SL  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 284 DFSGAIPKEI-GNLTKLTDLYLDQNKLQG-KIPHEI-GNLRKLEWLMLSHNKLVGVVPAP 340
            F   +       L  L  L L Q  L G  +       L  LE L+L  N +  + PA 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 341 IF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
            F N+     L L  N +  S+     +         L 
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR 186

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 11/173 (6%)

Query: 25  TDDPTNFLAKNWNTSSSFCYWTGVTCDVRS-HRVAALNISGLNLTG----TIPSEL-ANL 78
           T   +  L+ ++N  SSF +      D  +   + A  +   +L+      +   + ++ 
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298

Query: 79  SSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY 137
           + L+ L L+ N     I  + F  ++ LL +  + N L G +       +  LE L L Y
Sbjct: 299 TDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSY 356

Query: 138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQNKLQ 189
           N        +      L+EL+L +N    ++P  I   LT L ++ L  N   
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  130 bits (328), Expect = 2e-34
 Identities = 60/216 (27%), Positives = 86/216 (39%), Gaps = 6/216 (2%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           +P  + +    + + L  N  S            LT L L  N L          LA LE
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 204 MLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
            L L +N+   ++  + F  L  L  L L       + P     L++LQ LYL DN L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRK 322
            LP +   +L +L  L L+ N  S    +    L  L  L L QN++    PH   +L +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 323 LEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSL 357
           L  L L  N L   +P      L  L  L+L++N  
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  127 bits (322), Expect = 9e-34
 Identities = 63/214 (29%), Positives = 95/214 (44%), Gaps = 9/214 (4%)

Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSS 225
            +P  I       R+ L  N++             L +LWL +N L   I ++ F+ L+ 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 226 LLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
           L  LDLS N     +  +    L  L  L+L    L  EL   +   L +LQ L L  N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 285 FSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN 343
              A+P +   +L  LT L+L  N++          L  L+ L+L  N++  V P    +
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 344 LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L  L++L L  N+LS +LP+ A  PL  L+ L L
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  123 bits (311), Expect = 4e-32
 Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 14/226 (6%)

Query: 63  SGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPP 121
               L   +P  +   ++ Q + L  N     +P++ F    +L  ++ ++N L   +  
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVL-ARIDA 73

Query: 122 NFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLT 179
                ++ LE L L  N     +   T     +L  L L        +   +   L  L 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132

Query: 180 RLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFT 237
            L L+ N LQ  +P++   +L  L  L+L  N ++ ++P   F  L SL  L L  N   
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
            + P +  +L  L  LYL  N LS  LP      L +LQ L L  N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  107 bits (270), Expect = 2e-26
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 10/206 (4%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           + + G  ++    +      +L  L L  N     I ++ F  ++ L  +  ++N     
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGTIPKEI-GNLT 176
           + P   + +  L +L L       ++          L+ L L  N     +P +   +L 
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153

Query: 177 KLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLN 234
            LT L L  N++   +PE     L  L+ L L  N +   +    F  L  L+ L L  N
Sbjct: 154 NLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQL 260
           N + +   ++  L +LQ L L+DN  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPW 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  129 bits (326), Expect = 1e-33
 Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 21/277 (7%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
           SIPS +      L +  N  T    +  +   +  NL++L L  N  +     + SS   
Sbjct: 45  SIPSGLTEAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 154 LRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQNKLQGEIPEE--LGNLAELEMLWLQNN 210
           L  L LS NY S  +       L+ LT LNL  N  +  + E     +L +L++L + N 
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM 159

Query: 211 SLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG 269
                I    F  L+ L  L++  ++     P S+ ++ ++  L L   Q    L     
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV 218

Query: 270 NNLPSLQTLSLYVNDFSGAIPKEI--------GNLTKLTDLYLDQNKLQGKIPHEIGNLR 321
           +   S++ L L   D       E+               ++ +    L  ++   +  + 
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 322 KLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSL 357
            L  L  S N+L  V P  IF  L++L  + LH N  
Sbjct: 278 GLLELEFSRNQLKSV-PDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  111 bits (280), Expect = 2e-27
 Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL-GNLAEL 202
           IPS L+    ++ L LS+N  +     ++     L  L L  N +   I E+   +L  L
Sbjct: 46  IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 203 EMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQL 260
           E L L  N L+  + SS F  LSSL  L+L  N +  +  +S+  +L+ LQ L + +   
Sbjct: 103 EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 261 SGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL 320
             ++       L  L+ L +  +D     PK + ++  ++ L L   +    +   +   
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 321 RKLEWLMLSHNKLVG--------VVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNL 372
             +E L L    L               +    T  ++++ + SL   +    +  +  L
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN-QISGL 279

Query: 373 EELFL 377
            EL  
Sbjct: 280 LELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  107 bits (268), Expect = 8e-26
 Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 19/264 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++S   +T    S+L    +LQAL L+ N    +I    F ++ SL  +  + N L   
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL-SN 114

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEI-GNLT 176
           L  ++   +S+L  L L  N +      S  S   +L+ L + +      I ++    LT
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN 235
            L  L +  + LQ   P+ L ++  +  L L        +        SS+  L+L   +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 236 FTGIIPSSI--------GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
                 S +            + + + ++D  L   +     N +  L  L    N    
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLKS 291

Query: 288 AIPKEI-GNLTKLTDLYLDQNKLQ 310
            +P  I   LT L  ++L  N   
Sbjct: 292 -VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 8/145 (5%)

Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
                    S   L+  +P+ +     ++++L L  N  +     ++     L  L L  
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 307 NKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSS 364
           N +   I  +   +L  LE L LS+N L   + +  F  LS+L  L L  N       +S
Sbjct: 86  NGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143

Query: 365 ADVPLPNLEELFLWEYGREGRVSTN 389
               L  L+ L +       ++   
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRK 168

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 3e-33
 Identities = 53/341 (15%), Positives = 112/341 (32%), Gaps = 33/341 (9%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
           L I  +     I     A L+SL  L++           S+ ++  +  +  + +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AF 186

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
           L   F + +S++  L L+         S L   +    +   +   S    +    L KL
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
            R  L  ++++        +     +     +              ++  L +       
Sbjct: 247 LRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE---IGN 295
            + +    L  ++++ + ++++   +P +   +L SL+ L L  N       K     G 
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 296 LTKLTDLYLDQNKLQ--GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353
              L  L L QN L+   K    +  L+ L  L +S N     +P        +  L L 
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLS 418

Query: 354 NNSLSGSLPSSA-----------------DVPLPNLEELFL 377
           +  +   + +                    + LP L+EL++
Sbjct: 419 STGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYI 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 6e-33
 Identities = 66/367 (17%), Positives = 136/367 (37%), Gaps = 52/367 (14%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++S   +T     +L   ++LQ L L  +    +I    F ++ SL  +  ++N L   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHL-SS 88

Query: 119 LPPNFCNQMSNLESLFLKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIPKE-IGNLT 176
           L  ++   +S+L+ L L  N +    + S   +   L+ L + +      I +     LT
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 177 KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF 236
            L  L ++   L+    + L ++ ++  L L  +     +      LSS+  L+L   N 
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 237 TGI-------------------------------IPSSIGNLSSLQKLYLSDNQLSG--- 262
                                             +   +  +  L ++   D  L+G   
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 263 --ELPANIGNNLPSLQTLSLYVNDFSG-----AIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
                +++ + L  ++T+++             +      L K+  + ++ +K+      
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 316 EIGNLRKLEWLMLSHNKLVGVV---PAPIFNLSTLISLQLHNNSLSGSLPSSADV--PLP 370
              +L+ LE+L LS N +V       A      +L +L L  N L  S+  + ++   L 
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLK 387

Query: 371 NLEELFL 377
           NL  L +
Sbjct: 388 NLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 8e-33
 Identities = 64/342 (18%), Positives = 125/342 (36%), Gaps = 27/342 (7%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGE 118
           L++S  +L+    S    LSSL+ L+L  N +     +S+F N+++L ++   N   F E
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
           +       +++L  L +K          +L S + +  L+L  +  +  +      L+ +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG----------TIPSSIFSLSSLLN 228
             L LR   L       L        +       +            +   I  LS +  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 229 LDLSLNNFTGIIPSSIGNLS--------SLQKLYLSDNQLSGELPANIGNNLPSLQTLSL 280
            D +LN      PS    +S        ++++L++    L     + + + L  ++ +++
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITV 317

Query: 281 YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHE---IGNLRKLEWLMLSHNKL--VG 335
             +           +L  L  L L +N +  +        G    L+ L+LS N L  + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 336 VVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
                +  L  L SL +  N+    +P S       +  L L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNL 417

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (306), Expect = 7e-30
 Identities = 55/322 (17%), Positives = 116/322 (36%), Gaps = 21/322 (6%)

Query: 41  SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF 100
                             +  +  L   G++ ++ +    L+ L                
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF--DDC 261

Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160
            ++ L     + + +  EL      +   +  L +        + +  S  ++++ +++ 
Sbjct: 262 TLNGLGDFNPSESDVVSELG---KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE---LGNLAELEMLWLQNNSLT--GT 215
           ++           +L  L  L+L +N +  E  +     G    L+ L L  N L     
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL 275
               + +L +L +LD+S N F   +P S      ++ L LS   +   +   I     +L
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTL 433

Query: 276 QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
           + L +  N+   +       L +L +LY+ +NKL+  +P +      L  + +S N+L  
Sbjct: 434 EVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKS 487

Query: 336 VVPAPIFNLSTLISLQLHNNSL 357
           V       L++L  + LH N  
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (305), Expect = 1e-29
 Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 6/238 (2%)

Query: 143 KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
            IPS L++   ++ L LS N  +     ++     L  L L+ +++     +   +L  L
Sbjct: 19  SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 203 EMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGI-IPSSIGNLSSLQKLYLSDNQL 260
           E L L +N L+ ++ SS F  LSSL  L+L  N +  + + S   NL++LQ L + + + 
Sbjct: 77  EHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 261 SGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL 320
             E+       L SL  L +          + + ++  +  L L  ++    +      L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 321 RKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
             + +L L    L     +P+        ++      S  L   +   L  L    L 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILE 252

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 2e-29
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 7/231 (3%)

Query: 150 SCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN 209
           SC         S  F+ +IP  +     +  L+L  NK+      +L   A L++L L++
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 210 NSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANI 268
           + +  TI    F SL SL +LDLS N+ + +  S  G LSSL+ L L  N        ++
Sbjct: 60  SRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 269 GNNLPSLQTLSLYVNDFSGAIPKE-IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLM 327
             NL +LQTL +   +    I +     LT L +L +    L+      + ++R +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 328 LSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
           L  ++   ++      LS++  L+L + +L+     S          +   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKL 228

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 3e-29
 Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 19/240 (7%)

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
              +++ L +   + +  + +    +  +  I   N+ +F  +P +F   + +LE L L 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 137 YNMFHGKIPST---LSSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLNLRQNKLQG 190
            N+   +         +   L+ L LS N+   ++ K       L  LT L++ +N    
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 191 EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSL 250
            +P+      ++  L L +  +   + + I    +L  LD+S NN           L  L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLDSFSL----FLPRL 453

Query: 251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
           Q+LY+S N+L   LP    +  P L  + +  N            LT L  ++L  N   
Sbjct: 454 QELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 2e-28
 Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 17/266 (6%)

Query: 74  ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133
           E  + +     D + +              ++  ++     LF        + +  ++ +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRI 315

Query: 134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKE---IGNLTKLTRLNLRQNKLQ- 189
            ++ +       S     K L  L LS N       K     G    L  L L QN L+ 
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 190 -GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS 248
             +  E L  L  L  L +  N+    +P S      +  L+LS      +         
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQ 431

Query: 249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNK 308
           +L+ L +S+N L      +    LP LQ L +  N     +P +      L  + + +N+
Sbjct: 432 TLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQ 484

Query: 309 LQGKIPHEIGNLRKLEWLMLSHNKLV 334
           L+         L  L+ + L  N   
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 2e-26
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 5/234 (2%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
           + ++SL L +N         L +C  L+ L L S+  + TI  +   +L  L  L+L  N
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDN 84

Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN-FTGIIPSSI 244
            L        G L+ L+ L L  N       +S+F  L++L  L +     F+ I     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 245 GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
             L+SL +L +    L     +    ++  +  L+L++++ +  +      L+ +  L L
Sbjct: 145 AGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 305 DQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
               L       +        +     +   +       L  L+   L  + + 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.5 bits (212), Expect = 7e-18
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 221 FSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSL 280
            S  +    D    +FT  IPS +   ++++ L LS N+++  +         +LQ L L
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLIL 57

Query: 281 YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP 340
             +  +        +L  L  L L  N L        G L  L++L L  N    +    
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 341 IF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +F NL+ L +L++ N      +       L +L EL +
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 13/164 (7%)

Query: 60  LNISGLNLT--GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG 117
           L +S  +L         L  L +L +LD+S N F   +P S      +  +  ++  +  
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGI-R 423

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
            +          LE L +  N         L     L+EL +S N    T+P +      
Sbjct: 424 VVKTCI---PQTLEVLDVSNNNL-DSFSLFLPR---LQELYISRNKLK-TLP-DASLFPV 474

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221
           L  + + +N+L+         L  L+ +WL  N    + P   +
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  130 bits (328), Expect = 9e-33
 Identities = 58/311 (18%), Positives = 105/311 (33%), Gaps = 38/311 (12%)

Query: 78  LSSLQALDLSFNWFYGSIPSSIFNMSSLLS------IYFNNNTLFGELPPNFCNQMSNLE 131
           L       LS N FY +I  +  +  S         +   N      L       ++   
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--LINQFS 62

Query: 132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
            L L        +P  L    Q+  L ++ N    ++P+   +L     L+   N+L   
Sbjct: 63  ELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLE---YLDACDNRLS-T 114

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQ 251
           +PE   +L  L    + NN LT  +P      + L  ++   N  T + P    +L   +
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPELP---ALLEYINADNNQLTML-PELPTSL---E 163

Query: 252 KLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD----LYLDQN 307
            L + +NQL+  LP    +    L+ L +  N    ++P          +        +N
Sbjct: 164 VLSVRNNQLT-FLPELPES----LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
           ++   IP  I +L     ++L  N L   +   +   +            S S      +
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 368 PLPNLEELFLW 378
             P  + +  W
Sbjct: 277 HRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  115 bits (290), Expect = 7e-28
 Identities = 59/325 (18%), Positives = 111/325 (34%), Gaps = 35/325 (10%)

Query: 56  RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
           + A    +       +      ++    L L+      S+P ++     +  +    N L
Sbjct: 38  KQALPGENRNEAVSLLKE--CLINQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNAL 92

Query: 116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL 175
              LP       ++LE L    N     +P   +S   L+ L + +N  +  +P+    L
Sbjct: 93  -ISLPELP----ASLEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALL 142

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
                +N   N+L   +PE   +   LE+L ++NN LT  +P       SL  LD+S N 
Sbjct: 143 EY---INADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPE---LPESLEALDVSTNL 191

Query: 236 FTGIIPSSIGNLSSLQK----LYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK 291
               +P+        ++        +N+++  +P NI  +L    T+ L  N  S  I +
Sbjct: 192 LES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRE 248

Query: 292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
            +   T   D +  +         +  N                   + +  +      +
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306

Query: 352 LHNNSLSGSLPSSADVPLPNLEELF 376
            H N+ S  L   +D         F
Sbjct: 307 EHANTFSAFLDRLSDTVSARNTSGF 331

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 3e-14
 Identities = 50/297 (16%), Positives = 88/297 (29%), Gaps = 29/297 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++    LT  +P   A L   + ++   N     +P      +SL  +   NN L   L
Sbjct: 125 LDVDNNQLT-MLPELPALL---EYINADNNQL-TMLPELP---TSLEVLSVRNNQL-TFL 175

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE----LSLSSNYFSGTIPKEIGNL 175
           P        +LE+L +  N+    +P+         E         N  +  IP+ I +L
Sbjct: 176 PE----LPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
                + L  N L   I E L                + +      +       D     
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAW 287

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
           F     S +  +    +     N  S  L  +  ++  S +  S +       +   +  
Sbjct: 288 FPENKQSDVSQIWHAFEHEEHANTFSAFL--DRLSDTVSARNTSGFREQ----VAAWLEK 341

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVV--PAPIFNLSTLISL 350
           L+   +L      +         +   L W  L    LV          +   L+SL
Sbjct: 342 LSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  119 bits (300), Expect = 9e-31
 Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 12/209 (5%)

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLN 234
                L+L  N L+        +  EL++L L    +  TI    +  LS L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI- 293
               +   +   LSSLQKL   +  L+  L      +L +L+ L++  N        E  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEW----LMLSHNKLVGVVPAPIFNLSTLI 348
            NLT L  L L  NK+Q  I       L ++      L LS N +   +    F    L 
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLK 203

Query: 349 SLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            L L  N L  S+P      L +L++++L
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  119 bits (300), Expect = 9e-31
 Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 15/220 (6%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL-GNLAEL 202
           IP  L      + L LS N           +  +L  L+L + ++Q  I +    +L+ L
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 203 EMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261
             L L  N +  ++    FS LSSL  L     N   +    IG+L +L++L ++ N + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 262 GELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLT----DLYLDQNKLQGKIPHE 316
                   +NL +L+ L L  N    +I       L ++      L L  N +   I   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 317 IGNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
                +L+ L L  N+L   VP  IF  L++L  + LH N
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  109 bits (275), Expect = 3e-27
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 63  SGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPP 121
             LN    IP  L    S + LDLSFN     + S  F +   L  +  +   +   +  
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-QTIED 69

Query: 122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRL 181
                +S+L +L L  N          S    L++L       +      IG+L  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 182 NLRQNKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSL----LNLDLSLNN 235
           N+  N +Q  ++PE   NL  LE L L +N +  +I  +    L  +    L+LDLSLN 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF 285
              I P +   +  L++L L  NQL   +P  I + L SLQ + L+ N +
Sbjct: 189 MNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 5e-19
 Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 41  SFCYWTGVTCDVRSHRVAA-----------LNISGLNLTGTIPSELANLSSLQALDLSFN 89
                  +T                     L++S   L         +   LQ LDLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 90  WFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPS-T 147
               +I    + ++S L ++    N +   L     + +S+L+ L          + +  
Sbjct: 63  EI-QTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLA-SLENFP 119

Query: 148 LSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQNKLQGEIPEE----LGNLAEL 202
           +   K L+EL+++ N        E   NLT L  L+L  NK+Q  I       L  +  L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178

Query: 203 EM-LWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN 258
            + L L  N +   I    F    L  L L  N    +       L+SLQK++L  N
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  118 bits (298), Expect = 2e-30
 Identities = 55/204 (26%), Positives = 79/204 (38%), Gaps = 12/204 (5%)

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
             E++      +  +P ++      T L+L +N L       L     L  L L    LT
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
             +     +L  L  LDLS N    + P     L +L  L +S N+L+  LP      L 
Sbjct: 69  -KLQVD-GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124

Query: 274 SLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHN 331
            LQ L L  N+    +P  +     KL  L L  N L  ++P  +   L  L+ L+L  N
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

Query: 332 KLVGVVPAPIFNLSTLISLQLHNN 355
            L  + P   F    L    LH N
Sbjct: 183 SLYTI-PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  114 bits (288), Expect = 5e-29
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 10/209 (4%)

Query: 124 CNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
            +++++   +          +P  L        L LS N         +   T+LT+LNL
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSS 243
            + +L  ++  + G L  L  L L +N L  ++P    +L +L  LD+S N  T +   +
Sbjct: 63  DRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 244 IGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDL 302
           +  L  LQ+LYL  N+L   LP  +    P L+ LSL  N+ +  +P  +   L  L  L
Sbjct: 120 LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331
            L +N L   IP        L +  L  N
Sbjct: 178 LLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  107 bits (270), Expect = 2e-26
 Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 17/208 (8%)

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLS 232
            +     +N  +  L   +P +L    +  +L L  N L  T   +     + L  L+L 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLD 63

Query: 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE 292
               T +     G L  L  L LS NQL   LP  +G  LP+L  L +  N  + ++P  
Sbjct: 64  RAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 293 I-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLIS 349
               L +L +LYL  N+L+  +P  +     KLE L L++N L   +PA +   L  L +
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 350 LQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L L  NSL  ++P         L   FL
Sbjct: 177 LLLQENSLY-TIPKGF-FGSHLLPFAFL 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  105 bits (264), Expect = 1e-25
 Identities = 54/232 (23%), Positives = 84/232 (36%), Gaps = 35/232 (15%)

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
            ++S   ++        ++P  +        ++ + N L            + L  L L 
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLD 63

Query: 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL 196
                           +L +L +             G L  L  L+L  N+LQ  +P   
Sbjct: 64  RA--------------ELTKLQVD------------GTLPVLGTLDLSHNQLQ-SLPLLG 96

Query: 197 GNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYL 255
             L  L +L +  N LT ++P      L  L  L L  N    + P  +     L+KL L
Sbjct: 97  QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 256 SDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307
           ++N L+ ELPA + N L +L TL L  N     IPK       L   +L  N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 41/166 (24%), Positives = 57/166 (34%), Gaps = 52/166 (31%)

Query: 70  TIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN 129
           ++P     L +L  LD+SFN    S+P                              +  
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRL-TSLPLGAL------------------------RGLGE 125

Query: 130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ 189
           L+ L+LK N              +L+  +L     +           KL +L+L  N L 
Sbjct: 126 LQELYLKGN--------------ELK--TLPPGLLTP--------TPKLEKLSLANNNLT 161

Query: 190 GEIPEEL-GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN 234
            E+P  L   L  L+ L LQ NSL  TIP   F    L    L  N
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 265 PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLE 324
           P    + + S   ++    + + A+P ++      T L+L +N L       +    +L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 325 WLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            L L   +L  +    +   L  L +L L +N L  SLP      LP L  L +
Sbjct: 59  QLNLDRAELTKL---QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDV 107

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  115 bits (289), Expect = 3e-29
 Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 10/182 (5%)

Query: 200 AELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN 258
           A+ + L LQ+N L+ ++PS  F  L+ L  L L+ N    +       L +L+ L+++DN
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 259 QLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI 317
           +L   LP  + + L +L  L L  N    ++P  +  +LTKLT L L  N+LQ  +P  +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 318 -GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEEL 375
              L  L+ L L +N+L   VP   F  L+ L +L+L NN L   +P  A   L  L+ L
Sbjct: 153 FDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210

Query: 376 FL 377
            L
Sbjct: 211 QL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  110 bits (278), Expect = 9e-28
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 142 GKIPSTLSSC-KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA 200
            K    + SC      +  SS   +  IP  I       +L+L+ NKL     +    L 
Sbjct: 5   CKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 201 ELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
           +L +L+L +N L  T+P+ IF  L +L  L ++ N    +       L +L +L L  NQ
Sbjct: 62  KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 260 LSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI- 317
           L   LP  + ++L  L  LSL  N+   ++PK +   LT L +L L  N+L+ ++P    
Sbjct: 121 LK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAF 177

Query: 318 GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
             L +L+ L L +N+L   VP   F +L  L  LQL  N
Sbjct: 178 DKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 91.2 bits (227), Expect = 8e-21
 Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 14/201 (6%)

Query: 63  SGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPP 121
           S   LT  IPS +   +  + LDL  N    S+PS  F  ++ L  +Y N+N L   LP 
Sbjct: 24  SSKKLT-AIPSNI--PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKL-QTLPA 78

Query: 122 NFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLT 179
               ++ NLE+L++  N     +P         L EL L  N    ++P  +  +LTKLT
Sbjct: 79  GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLT 136

Query: 180 RLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFT 237
            L+L  N+LQ  +P+ +   L  L+ L L NN L   +P   F  L+ L  L L  N   
Sbjct: 137 YLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

Query: 238 GIIPSSIGNLSSLQKLYLSDN 258
            +   +  +L  L+ L L +N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 45/173 (26%), Positives = 60/173 (34%), Gaps = 55/173 (31%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
            +  LT  IPS+I +      LDL  N  + +   +   L+ L+ LYL+DN+L   LPA 
Sbjct: 24  SSKKLT-AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG 79

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLM 327
           I                F          L  L  L++  NKLQ                 
Sbjct: 80  I----------------FKE--------LKNLETLWVTDNKLQ----------------- 98

Query: 328 LSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWE 379
                    +P  +F  L  L  L+L  N L  SLP      L  L  L L  
Sbjct: 99  --------ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGY 142

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 60  LNISGLNLTGTIPSEL-ANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFG 117
           L ++   L  T+P+ +   L +L+ L ++ N    ++P  +F  + +L  +  + N L  
Sbjct: 66  LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQL-K 122

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTL-SSCKQLRELSLSSNYFSGTIPKEI-GNL 175
            LPP   + ++ L  L L YN     +P  +      L+EL L +N     +P+     L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL 180

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
           T+L  L L  N+L+        +L +L+ML LQ N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (296), Expect = 9e-29
 Identities = 55/326 (16%), Positives = 105/326 (32%), Gaps = 24/326 (7%)

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLE 131
             +   L       L   +        I ++S         + +   L  N C+   ++ 
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 132 SLFLKYNMFHGKIPSTLS-------------SCKQLRELSLSSNYFSGTIPKEIG----- 173
           +             + +                  +   S+S+    G +          
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233
           +L  L+   +  +             + + +     +            +S  L+LD S 
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLSG-ELPANIGNNLPSLQTLSLYVNDFSGAIPKE 292
           N  T  +  + G+L+ L+ L L  NQL      A +   + SLQ L +  N  S    K 
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 293 I-GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
                  L  L +  N L   I   +    +++ L L  NK+   +P  +  L  L  L 
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450

Query: 352 LHNNSLSGSLPSSADVPLPNLEELFL 377
           + +N L  S+P      L +L++++L
Sbjct: 451 VASNQLK-SVPDGIFDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 1e-28
 Identities = 55/302 (18%), Positives = 112/302 (37%), Gaps = 7/302 (2%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++S   +     S +  +          +       +   +  +L +I    N+    L
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241

Query: 120 PPNFCNQMSNLE--SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
              +   +      ++ L+  +       + +S K L    + S+ F           + 
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237
           +   N   +  +         ++    L   NN LT T+  +   L+ L  L L +N   
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 238 GI--IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
            +  I      + SLQ+L +S N +S +      +   SL +L++  N  +  I + +  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
             ++  L L  NK++  IP ++  L  L+ L ++ N+L  V       L++L  + LH N
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

Query: 356 SL 357
             
Sbjct: 479 PW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 7e-25
 Identities = 56/339 (16%), Positives = 117/339 (34%), Gaps = 26/339 (7%)

Query: 60  LNISGLNLTG-TIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSL-LSIYFNNNTLFG 117
           L++S        I  E  N+S L+ L LS      S    I +++   + +         
Sbjct: 95  LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154

Query: 118 ELPPNFCN-QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN------YFSGTIPK 170
           E P    +    +L  +F     FH  +  ++ +   L   ++          +  +I  
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPEELGNLA---ELEMLWLQNNSLTGTIPSSIF-----S 222
           ++    KL+ L L   +        +  L     +    + N  L G +    F     S
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 223 LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYV 282
           L +L    +  + F           S++     + +     +     + +     L    
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSN 333

Query: 283 NDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIG---NLRKLEWLMLSHNKLVGVVPA 339
           N  +  + +  G+LT+L  L L  N+L+ ++         ++ L+ L +S N +      
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 340 PIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
                  +L+SL + +N L+ ++        P ++ L L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDL 428

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 60/360 (16%), Positives = 119/360 (33%), Gaps = 51/360 (14%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           ++ S   L   +P +L+       L++S N+      S I ++S L  +  ++N +   L
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYL 60

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYF-SGTIPKEIGNLTKL 178
             +       LE L L +N    KI         L+ L LS N F +  I KE GN+++L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL---NN 235
             L L    L+      + +L   ++L +   +             +  +L +       
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 236 FTGIIPSSIGNLSSLQ------------------------------KLYLSDNQLSGELP 265
           F  I+  S+  +++L+                               L L++ + +    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 266 ANIGNNL--PSLQTLSLYVNDFSGAIPKEIG-----NLTKLTDLYLDQNKLQGKIPHEIG 318
             I   +   ++   S+      G +          +L  L+   +  +       +   
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 319 NLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
               +     + +    +V     + +S  + L   NN L+          L  LE L L
Sbjct: 298 IFSNMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLIL 355

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (271), Expect = 1e-25
 Identities = 60/320 (18%), Positives = 111/320 (34%), Gaps = 36/320 (11%)

Query: 58  AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG 117
           A+   +   +  T       L++L +LD   +    +  + I  ++ L  +   +N +  
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI-T 77

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
            L     +Q +NL  L    N     +   ++   +L  L+  +N  +     ++     
Sbjct: 78  TLDL---SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237
           LT LN  +N L  EI   + +  +L  L    N     +   +   + L  LD S N  T
Sbjct: 129 LTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT 297
            +    +     L +L    N ++ +L     N    L  L    N  +     ++  LT
Sbjct: 184 EL---DVSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKLTEI---DVTPLT 233

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
           +LT      N L  ++   +  L KL  L      L+ +    + + + LI  Q      
Sbjct: 234 QLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRK 287

Query: 358 SGSLPSSADVPLPNLEELFL 377
              L  +       L  L  
Sbjct: 288 IKELDVTH---NTQLYLLDC 304

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (266), Expect = 6e-25
 Identities = 64/335 (19%), Positives = 117/335 (34%), Gaps = 52/335 (15%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L  +  N+T     +L+  ++L  L    N    ++   +  ++ L  +  + N L  +L
Sbjct: 69  LICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL-TKL 121

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
             +   Q   L  L    N     +    +S   QL EL    N        ++   T+L
Sbjct: 122 DVS---QNPLLTYLNCARN----TLTEIDVSHNTQLTELDCHLN--KKITKLDVTPQTQL 172

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
           T L+   NK+      ++     L  L    N++T  +   +     L  LD S N  T 
Sbjct: 173 TTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE 226

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL----------------QTLSLYV 282
           I    +  L+ L     S N L+ EL  +  + L +L                Q +    
Sbjct: 227 I---DVTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282

Query: 283 NDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF 342
                    ++ + T+L  L      +  ++   +    KL +L L++ +L  +    + 
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTEL---DVS 336

Query: 343 NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           + + L SL   N  +     S     +P L   F 
Sbjct: 337 HNTKLKSLSCVNAHIQ-DFSSVGK--IPALNNNFE 368

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 46/250 (18%), Positives = 81/250 (32%), Gaps = 27/250 (10%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
            N  S              +      L  L   ++  +      I  LT LT+L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNL 247
           +   +   L     L  L   +N LT  +   +  L+ L  L+   N  T +    +   
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL---DVSQN 126

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307
             L  L  + N L+ E+     ++   L  L  ++N     +   +   T+LT L    N
Sbjct: 127 PLLTYLNCARNTLT-EIDV---SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
           K+      ++   + L  L    N +  +    +     L  L   +N L+  +  +   
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EIDVT--- 230

Query: 368 PLPNLEELFL 377
           PL  L     
Sbjct: 231 PLTQLTYFDC 240

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 52/280 (18%), Positives = 94/280 (33%), Gaps = 36/280 (12%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L+         +   +   + L  LD SFN         +     L  +  + N +  +L
Sbjct: 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KL 206

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
             N   Q   L  L    N    +I   ++   QL     S N  +  +   +  L+KLT
Sbjct: 207 DLN---QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT 257

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L+  Q  L  EI   L +  +L     +       +   +   + L  LD      T +
Sbjct: 258 TLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL 312

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
               +     L  LYL++ +L+ EL     ++   L++LS             +G +  L
Sbjct: 313 ---DLSQNPKLVYLYLNNTELT-ELDV---SHNTKLKSLSCVNAHIQ-DFS-SVGKIPAL 363

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKL------EWLMLSHNKL 333
            + +  + +    +P E      L      + L    N +
Sbjct: 364 NNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 16/160 (10%)

Query: 218 SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT 277
           +  F   +  +   +          S   L++L  L   ++ ++ ++       L  L  
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI--EKLTGLTK 68

Query: 278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVV 337
           L    N+ +     ++   T LT L  D NKL   +   +  L KL +L    NKL  + 
Sbjct: 69  LICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL- 121

Query: 338 PAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
              +     L  L    N+L+  +  S       L EL  
Sbjct: 122 --DVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDC 155

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  106 bits (266), Expect = 1e-24
 Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 21/250 (8%)

Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQ 185
             +      LK          T +    + ++  +++    ++ + I  L  +T+L L  
Sbjct: 19  AFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 186 NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIG 245
           NKL  +I + L NL  L  L+L  N +   + SS+  L  L +L L  N  + I  + + 
Sbjct: 75  NKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDI--NGLV 128

Query: 246 NLSSLQKLYLSDNQLSGELPANIGN--NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
           +L  L+ LYL +N+++     +I     L  L TLSL  N  S  +P  +  LTKL +LY
Sbjct: 129 HLPQLESLYLGNNKIT-----DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
           L +N +       +  L+ L+ L L   + +        NL    +++  + SL      
Sbjct: 182 LSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 364 SADVPLPNLE 373
           S D       
Sbjct: 240 SDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.9 bits (243), Expect = 7e-22
 Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 24/257 (9%)

Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160
             +  +       ++   +     N++++++ +    +     +   +     + +L L+
Sbjct: 19  AFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLN 73

Query: 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSI 220
            N  +   P  + NL  L  L L +NK++ ++   L +L +L+ L L++N ++  I + +
Sbjct: 74  GNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGL 127

Query: 221 FSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN--NLPSLQTL 278
             L  L +L L  N  T I  + +  L+ L  L L DNQ+S     +I     L  LQ L
Sbjct: 128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNL 180

Query: 279 SLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP 338
            L  N  S    + +  L  L  L L   +   K  +   NL     +  +   L  V P
Sbjct: 181 YLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTP 236

Query: 339 APIFNLSTLISLQLHNN 355
             I +        +  +
Sbjct: 237 EIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 16/224 (7%)

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
           S L +L  L++L L  N    S  + + ++  L S+Y  NN +           ++ L++
Sbjct: 103 SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKI--TDITVLSR-LTKLDT 157

Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
           L L+ N     I   L+   +L+ L LS N+   +  + +  L  L  L L   +   + 
Sbjct: 158 LSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKP 213

Query: 193 PEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQK 252
                NL     +   + SL    P  I         ++  +      P     +S +  
Sbjct: 214 INHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHL-----PEFTNEVSFIFY 266

Query: 253 LYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL 296
             ++  +        +   L  + T+S  V+        E G  
Sbjct: 267 QPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTR 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  103 bits (257), Expect = 1e-24
 Identities = 58/266 (21%), Positives = 90/266 (33%), Gaps = 23/266 (8%)

Query: 129 NLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPK---EIGNLTKLTRLNLR 184
           +LE L  + +        + +     L+ L++ +      I      +  ++ L  L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 185 QNKLQGEIPEELGNLA--ELEMLWLQNNSLTGTIPS----SIFSLSSLLNLDLSLNNFTG 238
             ++ G  P  L      +L +L L+N S             +    L  L ++  +   
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELP---ANIGNNLPSLQTLSLYVNDF---SGAIPKE 292
                +    +L  L LSDN   GE     A      P+LQ L+L        SG     
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 293 IGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
                +L  L L  N L+            +L  L LS   L   VP  +   + L  L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLD 280

Query: 352 LHNNSLSGSLPSSADVPLPNLEELFL 377
           L  N L    PS  +  LP +  L L
Sbjct: 281 LSYNRLD-RNPSPDE--LPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  101 bits (252), Expect = 7e-24
 Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 22/268 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSS---IFNMSSLLSIYFNNNTLF 116
           L            +++    SL+ L +        I      +  +S L  +   N  + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 117 GELPPNFCN-QMSNLESLFLKYNMFHGKIPSTLS----SCKQLRELSLSSNYFSGTIPKE 171
           G  PP        +L  L L+   +  +              L+ LS++  +      ++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 172 IGNLTKLTRLNLRQNKLQGEI-------PEELGNLAELEMLWLQNNSLTGTIPSSIFSLS 224
           +     L+ L+L  N   GE        P +   L  L +      + +G   +   +  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 225 SLLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
            L  LDLS N+      +      S L  L LS   L  ++P  +      L  L L  N
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL---PAKLSVLDLSYN 284

Query: 284 DFSGAIPKEIGNLTKLTDLYLDQNKLQG 311
                 P     L ++ +L L  N    
Sbjct: 285 RLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.7 bits (238), Expect = 5e-22
 Identities = 59/290 (20%), Positives = 94/290 (32%), Gaps = 22/290 (7%)

Query: 63  SGLNLTGTIPSEL-ANLSSLQALDLSFNWFYGSIP-SSIFNMSSLLSIYFNNNTLFGELP 120
           S  N  G    EL     SL+ L    +        + I    SL  +      +   + 
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 121 PNF--CNQMSNLESLFLKYNMFHGKIPSTLSSC--KQLRELSLSSNYFSG--TIPKEIGN 174
                   +S L+ L L+     G  P  L       L  L+L +  ++       E+  
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 175 L--TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI-------PSSIFSLSS 225
                L  L++ Q        E++     L  L L +N   G         P    +L  
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 226 LLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF 285
           L   +  +   +G+  +       LQ L LS N L     A   +    L +L+L     
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 286 SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
              +PK +    KL+ L L  N+L    P     L ++  L L  N  + 
Sbjct: 266 K-QVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 15/220 (6%)

Query: 173 GNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSS---IFSLSSLLNL 229
           G  +    L     +       ++     L+ L ++   +   I      +  +S L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 230 DLSLNNFTGIIPSSIGNLS--SLQKLYLSDNQLSG---ELPANIGNNLPSLQTLSLYVND 284
            L     TG  P  +   +   L  L L +   +     L        P L+ LS+    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 285 FSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI----GNLRKLEWLMLSHNK---LVGVV 337
                 +++     L+ L L  N   G+              L+ L L +       GV 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 338 PAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            A       L  L L +NSL  +  + +      L  L L
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 32/157 (20%)

Query: 37  NTSSSFCYWTGVTCDVRSHRVAALNISGLNLT---GTIPSELANLSSLQALDLSFNWFYG 93
           N            C ++   +  L +    +    G   +  A    LQ LDLS N    
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
           +                             C+  S L SL L +     ++P  L +  +
Sbjct: 243 AA------------------------GAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--K 275

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
           L  L LS N      P     L ++  L+L+ N    
Sbjct: 276 LSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 59/288 (20%), Positives = 110/288 (38%), Gaps = 26/288 (9%)

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
                L++   +    +    +   +  ++  + ++      +   +       ++NL  
Sbjct: 13  FPDPALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGV-TTIEGV--QYLNNLIG 67

Query: 133 LFLKYNMFHGKI--PSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
           L LK N    +I   + L +  ++ EL LS N         I  L  +  L+L   ++  
Sbjct: 68  LELKDN----QITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 191 EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSL 250
             P  L  L+ L++L+L  N +T    S +  L++L  L +     + +  + + NLS L
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKL 175

Query: 251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
             L   DN++S   P     +LP+L  + L  N  S   P  + N + L  + L    + 
Sbjct: 176 TTLKADDNKISDISPL---ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

Query: 311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
            +      NL      ++       + PA I +  T  S  L  N  S
Sbjct: 231 NQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 16/171 (9%)

Query: 207 LQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPA 266
            Q  ++    P    +L++ + +    +N T  +     +L  +  L      ++  +  
Sbjct: 4   TQPTAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 267 NIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL 326
                L +L  L L  N  +   P  + NLTK+T+L L  N L  K    I  L+ ++ L
Sbjct: 59  V--QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTL 112

Query: 327 MLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            L+  ++  V   P+  LS L  L L  N ++ ++   A   L NL+ L +
Sbjct: 113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-NISPLAG--LTNLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
           + LA LS+LQ L L  N    +  S +  +++L  +   N  +  +L P     +S L +
Sbjct: 123 TPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTT 177

Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
           L    N     I   L+S   L E+ L +N  S   P  + N + L  + L    +  + 
Sbjct: 178 LKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 193 PEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
                NL       ++  S     P++I    +  + +L+ N  + I
Sbjct: 234 VFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 33/186 (17%), Positives = 72/186 (38%), Gaps = 11/186 (5%)

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233
                    L Q+        ++ +L  + +  +    LTG     I    ++ +L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINN 75

Query: 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
            + T    + I  LS+L++L +    ++ +   N+ + L SL  L +  +    +I  +I
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKI 132

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH 353
             L K+  + L  N     I   +  L +L+ L +  + +       I +   L  L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAF 189

Query: 354 NNSLSG 359
           + ++ G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 8/182 (4%)

Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211
              +         S T       +  LT + L    +  ++   +     ++ L + N  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIH 77

Query: 212 LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNN 271
            T    + I  LS+L  L +   + T     ++  L+SL  L +S +     +   I N 
Sbjct: 78  ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NT 134

Query: 272 LPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331
           LP + ++ L  N     I   +  L +L  L +  + +       I +  KL  L     
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 332 KL 333
            +
Sbjct: 192 TI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 91.2 bits (227), Expect = 1e-21
 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 12/164 (7%)

Query: 126 QMSNLESLFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
           QM++L  + L        +     +     +++L++++ + +   P  I  L+ L RL +
Sbjct: 42  QMNSLTYITLANI----NVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSS 243
               +  +    L  L  L +L + +++   +I + I +L  + ++DLS N     I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154

Query: 244 IGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG 287
           +  L  L+ L +  + +          + P L  L  +     G
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRGI---EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.0 bits (224), Expect = 4e-21
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 32/199 (16%)

Query: 65  LNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
           L  + T     A ++SL  + L+          ++ +++ +                   
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANI--------NVTDLTGI------------------- 62

Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR 184
               N++ L +     H    + +S    L  L +     +      +  LT LT L++ 
Sbjct: 63  EYAHNIKDLTINNI--HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSI 244
            +     I  ++  L ++  + L  N     I   + +L  L +L++  +         I
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGI 177

Query: 245 GNLSSLQKLYLSDNQLSGE 263
            +   L +LY     + G+
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 89.2 bits (222), Expect = 7e-21
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 198 NLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD 257
                    L  +S      +    ++SL  + L+  N T +  + I    +++ L +++
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 258 NQLSGELPANIGN--NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH 315
              +     N      L +L+ L +   D +      +  LT LT L +  +     I  
Sbjct: 76  IHAT-----NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 316 EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEEL 375
           +I  L K+  + LS+N  +  +  P+  L  L SL +  + +            P L +L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIED---FPKLNQL 186

Query: 376 FL 377
           + 
Sbjct: 187 YA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 11/172 (6%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
           +   L  +  +     S+       L   +     +   ++SL  + L++  ++     +
Sbjct: 4   EQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-----D 58

Query: 268 IGN--NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEW 325
           +       +++ L++     +   P  I  L+ L  L +    +       +  L  L  
Sbjct: 59  LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 326 LMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L +SH+     +   I  L  + S+ L  N     +       LP L+ L +
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT--LPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L I+ ++ T    + ++ LS+L+ L +           ++  ++SL  +  +++     +
Sbjct: 71  LTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                  +  + S+ L YN     I   L +  +L+ L++  +         I +  KL 
Sbjct: 129 LTKINT-LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLN 184

Query: 180 RLNLRQNKLQGE 191
           +L      + G+
Sbjct: 185 QLYAFSQTIGGK 196

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =   99 bits (249), Expect = 3e-23
 Identities = 48/258 (18%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 40  SSFCYWTGVTCDVRSHRVAA-----------LNISGLNLTGTIPSELANLSSLQALDLSF 88
              C+ +      +  +V             L      L        +    L+ +++S 
Sbjct: 4   HRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63

Query: 89  NWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPS- 146
           N     I + +F N+  L  I          + P     + NL+ L +        +P  
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDV 122

Query: 147 TLSSCKQLRELSLSSNYFSGTIPKEI--GNLTKLTRLNLRQNKLQGEIPEE-LGNLAELE 203
                 Q   L +  N    TI +    G   +   L L +N +Q EI           E
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE 181

Query: 204 MLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
           +    NN+L   +P+ +F   S  + LD+S      +    + NL  L+     + +   
Sbjct: 182 LNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--- 237

Query: 263 ELPANIGNNLPSLQTLSL 280
           +LP      L +L   SL
Sbjct: 238 KLPTL--EKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 98.7 bits (246), Expect = 7e-23
 Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 15/236 (6%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNL-RQ 185
            N   L               S    L ++ +S N     I  ++  NL KL  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 186 NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPS-S 243
           N L    PE   NL  L+ L + N  +   +P          + LD+  N     I   S
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 244 IGNLSS-LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTD 301
              LS     L+L+ N +  E+  +  N     +      N+    +P ++    +    
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI 206

Query: 302 LYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS 356
           L + + ++   +P     NL+KL      + K +      +  L  L+   L   S
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 98.7 bits (246), Expect = 8e-23
 Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 14/239 (5%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE-LGNLAEL 202
           IPS L       EL                    L ++ + QN +   I  +   NL +L
Sbjct: 24  IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 203 EMLWLQN-NSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
             + ++  N+L   I    F  L +L  L +S      +      +      L + DN  
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 261 SGELPANIGNNLPS-LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-G 318
              +  N    L      L L  N     I     N T+L +L L  N    ++P+++  
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 319 NLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
                  L +S  ++  +    + NL  L +   +N      LP+     L  L E  L
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEK--LVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 92.6 bits (230), Expect = 9e-21
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 181 LNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGI 239
              +++K+  EIP +L        L      L   I    FS    L  +++S N+   +
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 240 IPSSI-GNLSSLQKLYLSD-NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNL 296
           I + +  NL  L ++ +   N L   +      NLP+LQ L +        +P     + 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHS 127

Query: 297 TKLTDLYLDQNKLQGKIPHEI--GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQL-H 353
            +   L +  N     I      G   +   L L+ N +   +    FN + L  L L  
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSD 186

Query: 354 NNSLSGSLPSSADVPLPNLEELFL 377
           NN+L   LP+           L +
Sbjct: 187 NNNLE-ELPNDVFHGASGPVILDI 209

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 11/156 (7%)

Query: 60  LNISGLNLTGTIPSEL-ANLSSLQALDLSFNWFYGSIPSSIFN--MSSLLSIYFNNNTLF 116
           L IS   +   +P     +      LD+  N    +I  + F       + ++ N N + 
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI- 166

Query: 117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNL 175
            E+  +  N     E      N                  L +S      ++P     NL
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL 225

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211
            KL   +    K   ++P  L  L  L    L   S
Sbjct: 226 KKLRARSTYNLK---KLPT-LEKLVALMEASLTYPS 257

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =   99 bits (249), Expect = 4e-23
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 13/177 (7%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPA 266
               L   +P S+ S      LDLS NN + +        L++L  L LS N L+  + +
Sbjct: 26  SKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS 81

Query: 267 NIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLE 324
                +P+L+ L L  N     + + +  +L  L  L L  N +   +      ++ +L+
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 325 WLMLSHNKLVGVVP---APIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW 378
            L LS N++             L  L+ L L +N L   LP +    LP   +  L+
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 97.2 bits (242), Expect = 3e-22
 Identities = 53/200 (26%), Positives = 78/200 (39%), Gaps = 39/200 (19%)

Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPEE--LGNLAELEMLWLQNNSLTGTIPSSIFS-L 223
            +P+ + + T    L+L  N L   +  E     L  L  L L +N L   I S  F  +
Sbjct: 32  NVPQSLPSYT--ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 224 SSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
            +L  LDLS N+   +      +L +L+ L L +N +   +  N                
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNA--------------- 131

Query: 284 DFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI----GNLRKLEWLMLSHNKLVGVVPA 339
            F          + +L  LYL QN++  + P E+      L KL  L LS NKL  +   
Sbjct: 132 -FED--------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 340 PIFNLSTL--ISLQLHNNSL 357
            +  L       L LHNN L
Sbjct: 182 DLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 7e-15
 Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 61/210 (29%)

Query: 60  LNISGLNLTGTIPSE--LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG 117
           L++S  NL+  + +E     L++L +L LS N     I S  F                 
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAF----------------- 84

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
                    + NL  L L  N               L   +L    FS         L  
Sbjct: 85  -------VPVPNLRYLDLSSN--------------HLH--TLDEFLFSD--------LQA 113

Query: 178 LTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQNNSLTGTIPSSIF----SLSSLLNLDLS 232
           L  L L  N +   +      ++A+L+ L+L  N ++   P  +      L  L+ LDLS
Sbjct: 114 LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLS 171

Query: 233 LNNFTGIIPSSIGNLSSLQK--LYLSDNQL 260
            N    +  + +  L +  K  LYL +N L
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 96.6 bits (241), Expect = 4e-23
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
           +   LT  IP+++    ++  + L  N    I P +      L+++ LS+NQ+S EL  +
Sbjct: 19  RGKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD 74

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEW 325
               L SL +L LY N  +  +PK +   L  L  L L+ NK+   +  +   +L  L  
Sbjct: 75  AFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNL 132

Query: 326 LMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
           L L  NKL  +       L  + ++ L  N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 200 AELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN 258
             +  + L+ N++   IP   F     L  +DLS N  + + P +   L SL  L L  N
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 259 QLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI 317
           +++ ELP ++   L SLQ L L  N  +  +  +   +L  L  L L  NKLQ  I    
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 318 -GNLRKLEWLMLSHN 331
              LR ++ + L+ N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
            IP+++    + + +  N       +PP   +    L  + L  N      P      + 
Sbjct: 25  EIPTNLPETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 154 LRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNS 211
           L  L L  N  +  +PK +   L  L  L L  NK+   +  +   +L  L +L L +N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 212 LTGTIPSSIF-SLSSLLNLDLSLNNF 236
           L  TI    F  L ++  + L+ N F
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 2e-22
 Identities = 64/334 (19%), Positives = 124/334 (37%), Gaps = 21/334 (6%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++   ++ G     L   ++     +       S+  ++ ++++L  +  +N  L  E 
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDEN 234

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSS---------CKQLRELSLSSNYFSGTIPK 170
                  +S L       N+    I +T             + +  L++ +   +  I +
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 171 EIGN-----LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSS 225
           E        L  L   +++               AE+ +  L  +           S SS
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 226 LLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL-SGELPANIGNNLPSLQTLSLYVND 284
              L+ + N FT  +      L  LQ L L  N L +    A +  N+ SL+TL + +N 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 285 F-SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN 343
             S A  +       +  L L  N L G +   +    K++ L L +N++   +P  + +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTH 471

Query: 344 LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L  L  L + +N L  S+P      L +L+ ++L
Sbjct: 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.9 bits (236), Expect = 7e-21
 Identities = 47/296 (15%), Positives = 102/296 (34%), Gaps = 20/296 (6%)

Query: 75  LANLSSLQALDLSFNWFYGSIPSSIFNM----SSLLSIYFNNNTLFGELPPNF--CNQMS 128
           +  L  LQ  ++  N        +  +      +LL++   +     +            
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 129 NLESLFLKYNMFHGKIP-----STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
            +E L +       +I       + ++ K L    + +  F  +         ++    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSS 243
             +           + +    L    N  T ++     +L  L  L L  N         
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395

Query: 244 IGNLSSLQKLYLSDNQLSGELPANIGNNL----PSLQTLSLYVNDFSGAIPKEIGNLTKL 299
                ++  L   D  L+  L ++  +       S+  L+L  N  +G++ + +    K+
Sbjct: 396 ALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKV 452

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
             L L  N++   IP ++ +L+ L+ L ++ N+L  V       L++L  + LH+N
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 54/269 (20%), Positives = 95/269 (35%), Gaps = 18/269 (6%)

Query: 29  TNFLAKNWNTSSSFCYWTGVTCDVRS---HRVAALNISGLNLTGTIPSELAN-----LSS 80
                 N         W       +      V  LNI  L +T  I  E        L S
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 81  LQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMF 140
           L    +    F      +++++ + ++I   + +    +        S+   L    N+F
Sbjct: 307 LMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 141 HGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ----GEIPEEL 196
              +    S+ K+L+ L L  N       K       ++ L      L            
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 197 GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLS 256
                + +L L +N LTG++   +     +  LDL  N     IP  + +L +LQ+L ++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 257 DNQLSGELPANIGNNLPSLQTLSLYVNDF 285
            NQL   +P  + + L SLQ + L+ N +
Sbjct: 482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 69/380 (18%), Positives = 126/380 (33%), Gaps = 55/380 (14%)

Query: 41  SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF 100
           +     G      +   + ++ S  NLT  +P +L      +AL LS N     +     
Sbjct: 17  ALALIVGSMTPFSNELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSI-SELRMPDI 72

Query: 101 -NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL 159
             +S L  +  ++N +   L  +      +LE L + +N     I         LR L L
Sbjct: 73  SFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDL 128

Query: 160 SSNYF-SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPS 218
           S N F    + KE GNLTKLT L L   K +     +L  +A L +  +  + ++  I  
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 219 SIFSLSSLLN---LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN----- 270
                  + N   L L  +  +        ++++L  L LS+ +L+ E    +       
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 271 -NLPSLQTLSLYVNDFSGAIPKEIGNL---TKLTDLYLDQNKLQGKIPHEIGN------- 319
              P+L  ++L   + +     ++        +  L +    +  +I  E          
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 320 ----------------------LRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
                                   ++   MLS +    +      + S+   L    N  
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 358 SGSLPSSADVPLPNLEELFL 377
           +          L  L+ L L
Sbjct: 366 T-DSVFQGCSTLKRLQTLIL 384

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 51/260 (19%), Positives = 93/260 (35%), Gaps = 36/260 (13%)

Query: 149 SSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQ 208
            S +    +  S+   +  +PK++    +   L+L QN +      ++  L+EL +L L 
Sbjct: 28  FSNELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLS 84

Query: 209 NNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANI 268
           +N +  ++   +F                            L+ L +S N+L   +    
Sbjct: 85  HNRIR-SLDFHVFL-----------------------FNQDLEYLDVSHNRLQ-NISC-- 117

Query: 269 GNNLPSLQTLSLYVNDF-SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLM 327
              + SL+ L L  NDF    + KE GNLTKLT L L   K + ++         L  ++
Sbjct: 118 -CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCIL 175

Query: 328 LS--HNKLVGVVPAPIFNLSTLI-SLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG 384
           L      + G     +   +T +  L  H NSL     + +   L +L+   +       
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 385 RVSTNGDIYNFGIMIMETFT 404
           +              +   T
Sbjct: 236 QRLMTFLSELTRGPTLLNVT 255

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
            P    +  +  + +L     +  + +    L  + ++    + ++      +  L  + 
Sbjct: 13  FPDDAFA--ETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVR 66

Query: 204 MLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
            L L  N L   I       L++L  L L+ N    +       L++L++L L +NQL  
Sbjct: 67  YLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ- 122

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLR 321
            LP  + + L +L  L+L  N            LT LT+L L  N+LQ  +P  +   L 
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181

Query: 322 KLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
           +L+ L L  N+L   VP  +F  L++L  + LH+N
Sbjct: 182 QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
            P      +   K  L    ++ +      N L S+  +    +D        I  L  +
Sbjct: 13  FPDDA--FAETIKANLKKKSVT-DAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNV 65

Query: 300 TDLYLDQNKLQGKIPHEIG---NLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNN 355
             L L  NKL      +I     L  L +L+L+ N+L  + P  +F+ L+ L  L L  N
Sbjct: 66  RYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVEN 119

Query: 356 SLSGSLPSSADVPLPNLEELFLW 378
            L  SLP      L NL  L L 
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLA 141

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
            L+S+  +  + +    S+   I  + ++  +    N L          +++NL  L L 
Sbjct: 39  ELNSIDQIIANNSDI-KSVQG-IQYLPNVRYLALGGNKL--HDISAL-KELTNLTYLILT 93

Query: 137 YNMFHGKIPSTL-SSCKQLRELSLSSNYFSGTIPKEIGN-LTKLTRLNLRQNKLQGEIPE 194
            N     +P+ +      L+EL L  N    ++P  + + LT LT LNL  N+LQ     
Sbjct: 94  GNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151

Query: 195 ELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKL 253
               L  L  L L  N L  ++P  +F  L+ L +L L  N    +       L+SLQ +
Sbjct: 152 VFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210

Query: 254 YLSDNQ 259
           +L DN 
Sbjct: 211 WLHDNP 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 12/218 (5%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL-GNLAEL 202
           IPS   S    + L L   +          NL  ++R+ +  +    ++      NL+++
Sbjct: 26  IPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 203 EMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIP-SSIGNLSSLQKLYLSDNQL 260
             + ++N      I       L  L  L +           + + +      L ++DN  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 261 SGELPANIGNNLPS-LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-- 317
              +P N    L +   TL LY N F+ ++     N TKL  +YL++NK    I  +   
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 318 GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHN 354
           G       L +S   +   +P+    +L  LI+     
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 93.5 bits (233), Expect = 7e-22
 Identities = 43/228 (18%), Positives = 80/228 (35%), Gaps = 32/228 (14%)

Query: 60  LNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFG 117
           L +   +L  TIPS   +NL ++  + +S +     + S  F N+S +  I   N     
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTK 177
            + P+   ++  L+ L +                  L+     +          + +   
Sbjct: 95  YIDPDALKELPLLKFLGIFNT--------------GLKMFPDLTK---------VYSTDI 131

Query: 178 LTRLNLRQNKLQGEIPEEL--GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN 235
              L +  N     IP     G   E   L L NN  T ++    F+ + L  + L+ N 
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190

Query: 236 FTGIIPSSI--GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
           +  +I      G  S    L +S   ++  LP+    +L  L   + +
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 14/207 (6%)

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNN- 235
                +    +Q  IP         + L L    L  TIPS  FS L ++  + +S++  
Sbjct: 13  EEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVT 67

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE--I 293
              +   S  NLS +  + + + +    +  +    LP L+ L ++        P    +
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKV 126

Query: 294 GNLTKLTDLYLDQNKLQGKIPHEI--GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQ 351
            +      L +  N     IP     G   +   L L +N     V    FN + L ++ 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVY 185

Query: 352 LHNNSLSGSLPSSADVPLPN-LEELFL 377
           L+ N     +   A   + +    L +
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDV 212

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 87.8 bits (218), Expect = 6e-20
 Identities = 39/212 (18%), Positives = 80/212 (37%), Gaps = 14/212 (6%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
            + ++L L             S+   +  + +S +     +      NL+K+T + +R  
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 187 KLQGEIPEE-LGNLAELEMLWLQNNSLTGTIP--SSIFSLSSLLNLDLSLNNFTGIIPS- 242
           +    I  + L  L  L+ L + N  L    P  + ++S      L+++ N +   IP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 243 SIGNLSS-LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI--GNLTKL 299
           +   L +    L L +N  +  +     N    L  + L  N +   I K+   G  +  
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN 331
           + L + Q  +   +P +   L  L+ L+  + 
Sbjct: 208 SLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
           A+ E L LQ+  L     ++   L+ L  L+L  N    +      +L+ L  L L++NQ
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 260 LSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI- 317
           L+  LP  + ++L  L  L L  N    ++P  +   LTKL +L L+ N+LQ  IP    
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 318 GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
             L  L+ L LS N+L  V       L  L ++ L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
           S+PS I   +  L +          L       ++ L  L L YN              +
Sbjct: 28  SVPSGIPADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84

Query: 154 LRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQNKLQGEIPEEL-GNLAELEMLWLQNNS 211
           L  L L++N  + ++P  +  +LT+L +L L  N+L+  +P  +   L +L+ L L  N 
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ 142

Query: 212 LTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
           L  +IP+  F  L++L  L LS N    +   +   L  LQ + L  NQ
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGE 118
           L++    L     +    L+ L  L+L +N    ++ + +F+ ++ L ++   NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQL-AS 97

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTK 177
           LP    + ++ L+ L+L  N              +L+EL L++N    +IP      LT 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
           L  L+L  N+LQ         L +L+ + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 88.6 bits (220), Expect = 2e-20
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 11/152 (7%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPA 266
            N  L   IP  I        L L+ N FT +  + I   L  L+K+  S+N+++ ++  
Sbjct: 19  SNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE 74

Query: 267 NIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLE 324
                   +  + L  N     +  ++   L  L  L L  N++   + ++    L  + 
Sbjct: 75  GAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVR 132

Query: 325 WLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
            L L  N++   V    F  L +L +L L  N
Sbjct: 133 LLSLYDNQITT-VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 88.2 bits (219), Expect = 4e-20
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 167 TIPKEIGNLTKLTRLNLRQNKLQGEIPE-ELGNLAELEMLWLQNNSLTGTIPSSIF-SLS 224
            IP+ I   T    L L  N+            L +L  +   NN +T  I    F   S
Sbjct: 25  KIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
            +  + L+ N    +       L SL+ L L  N+++  +  +    L S++ LSLY N 
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 285 FSGAIPKEI-GNLTKLTDLYLDQN 307
            +  +       L  L+ L L  N
Sbjct: 141 IT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 128 SNLESLFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQ 185
                L L  N F   + +T       QLR+++ S+N  +          + +  + L  
Sbjct: 32  QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 186 NKLQGEIPEEL-GNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSS 243
           N+L+  +  ++   L  L+ L L++N +T  + +  F  LSS+  L L  N  T + P +
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 244 IGNLSSLQKLYLSDNQL 260
              L SL  L L  N  
Sbjct: 149 FDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 265 PANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRK 322
           P +I         L L  N+F+      I   L +L  +    NK+   I          
Sbjct: 27  PEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82

Query: 323 LEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +  ++L+ N+L  V    +F  L +L +L L +N ++  + + + + L ++  L L
Sbjct: 83  VNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSL 136

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.0 bits (221), Expect = 6e-20
 Identities = 58/288 (20%), Positives = 105/288 (36%), Gaps = 48/288 (16%)

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
                 +     +L       +   +   ++S+  I  NN+               +++S
Sbjct: 18  FSDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNS---------------DIKS 60

Query: 133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEI 192
           +              +     + +L L+ N  +   P  + NL  L  L L +NK++ ++
Sbjct: 61  V------------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL 105

Query: 193 PEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQK 252
              L +L +L+ L L++N ++  I + +  L  L +L L  N  T I  + +  L+ L  
Sbjct: 106 -SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160

Query: 253 LYLSDNQLSGELPANIGN--NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
           L L DNQ+S     +I     L  LQ L L  N  S    + +  L  L  L L   +  
Sbjct: 161 LSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213

Query: 311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
            K  +   NL     +  +   L  V P  I +        +  +   
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 5e-17
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 26/189 (13%)

Query: 194 EELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKL 253
                 AE     L+  S+T  +  +   L+S+  +  + ++   +    I  L ++ KL
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 254 YLSDNQLSGELPANIGN--NLPSLQTLSLYVN---DFSGAIPKEIGNLTKLTDLYLDQNK 308
           +L+ N+L+     +I    NL +L  L L  N   D S      + +L KL  L L+ N 
Sbjct: 74  FLNGNKLT-----DIKPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNG 123

Query: 309 LQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVP 368
           +   I   + +L +LE L L +NK+  +    +  L+ L +L L +N +S  +   A   
Sbjct: 124 IS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVPLAG-- 176

Query: 369 LPNLEELFL 377
           L  L+ L+L
Sbjct: 177 LTKLQNLYL 185

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
           ++     ++P+ I   ++   L L  N  T + P    +L +L++LYL  NQL   LP  
Sbjct: 27  RSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVG 82

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL 326
           + ++L  L  L L  N  +  +P  +   L  L +L++  NKL  ++P  I  L  L  L
Sbjct: 83  VFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140

Query: 327 MLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
            L  N+L   +P   F  LS+L    L  N
Sbjct: 141 ALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 79.4 bits (196), Expect = 5e-17
 Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214
           + L L  N  +   P    +L  L  L L  N+L         +L +L +L L  N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 215 TIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
            +PS++F  L  L  L +  N  T  +P  I  L+ L  L L  NQL   +P    + L 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLS 159

Query: 274 SLQTLSLYVN 283
           SL    L+ N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 76.3 bits (188), Expect = 5e-16
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
              ++L+L +N +T   P    SL +L  L L  N    +      +L+ L  L L  NQ
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 260 LSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-G 318
           L+  LP+ + + L  L+ L +  N  +  +P+ I  LT LT L LDQN+L+  IPH    
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156

Query: 319 NLRKLEWLMLSHN 331
            L  L    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
           +N + L+L  N      P    S   L+EL L SN     +P  +  +LT+LT L+L  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN 246
           +L          L  L+ L++  N LT  +P  I  L+ L +L L  N    I   +   
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 247 LSSLQKLYLSDNQ 259
           LSSL   YL  N 
Sbjct: 158 LSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 265 PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKL 323
           PA I     + Q L L+ N  +   P    +L  L +LYL  N+L   +P  +  +L +L
Sbjct: 35  PAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 324 EWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             L L  N+L  V+P+ +F+ L  L  L +  N L+  LP   +  L +L  L L
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLAL 142

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 81.3 bits (201), Expect = 7e-18
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
            +   T ++P+ I +      LDL  N+   +       L+SL +LYL  N+L   LP  
Sbjct: 15  YSQGRT-SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG 70

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWL 326
           + N L SL  L+L  N            LT+L +L L+ N+LQ  +P  +   L +L+ L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDL 129

Query: 327 MLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
            L  N+L  V P  +F  L++L  + LH+N
Sbjct: 130 RLYQNQLKSV-PDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 75.5 bits (186), Expect = 7e-16
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSL 226
           +P  I   T  T L+L  N L+         L  L  L+L  N L  ++P+ +F  L+SL
Sbjct: 22  VPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS 286
             L+LS N    +       L+ L++L L+ NQL   LP  + + L  L+ L LY N   
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137

Query: 287 GAIPKEI-GNLTKLTDLYLDQN 307
            ++P  +   LT L  ++L  N
Sbjct: 138 -SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214
             L L +N            LT LT+L L  NKLQ         L  L  L L  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 215 TIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
           ++P+ +F  L+ L  L L+ N    +       L+ L+ L L  NQL   +P  + + L 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLT 148

Query: 274 SLQTLSLYVN 283
           SLQ + L+ N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGN-LTKLTRLNLRQNKLQ 189
             L L+ N               L +L L  N    ++P  + N LT LT LNL  N+LQ
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 190 GEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLS 248
                    L +L+ L L  N L  ++P  +F  L+ L +L L  N    +       L+
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 249 SLQKLYLSDNQ 259
           SLQ ++L DN 
Sbjct: 149 SLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 265 PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN-LRKL 323
           P  I         L L  N            LT LT LYL  NKLQ  +P+ + N L  L
Sbjct: 23  PTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 324 EWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            +L LS N+L   +P  +F+ L+ L  L L+ N L  SLP      L  L++L L
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRL 131

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 82.4 bits (204), Expect = 7e-18
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 22/235 (9%)

Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQ 185
            ++N     L           +      ++  +  ++         +   T L  L+L  
Sbjct: 17  GLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 186 NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIG 245
           N++  ++   L +L +LE L +  N L      +    + L  L L  N        S+ 
Sbjct: 73  NQIS-DL-SPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDT--DSLI 125

Query: 246 NLSSLQKLYLSDNQLSGELPANIGN--NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
           +L +L+ L + +N+L      +I     L  L+ L L+ N+ +      +  L K+  + 
Sbjct: 126 HLKNLEILSIRNNKLK-----SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWID 178

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
           L   K   +       L     +     +   + P  I N  + +   +      
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 27/242 (11%)

Query: 172 IGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL 231
              L    + NL +  +   +      L+ ++     N+++     + +   ++L  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHL 70

Query: 232 SLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANI-GNNLPSLQTLSLYVNDFSGAIP 290
           S N  + +  S + +L+ L++L ++ N+L      N+ G     L  L L  N+      
Sbjct: 71  SHNQISDL--SPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTDS 123

Query: 291 KEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISL 350
             + +L  L  L +  NKL+  I   +G L KLE L L  N++       +  L  +  +
Sbjct: 124 --LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177

Query: 351 QLHNNSLSGSLPSSADVPLPNLEELFLWE--YGREGRVSTNGDIYNFGIMIMETFTAKKP 408
            L             + P+    EL++       +GR  +   I N G  +      + P
Sbjct: 178 DLTGQKCV-------NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELP 230

Query: 409 TD 410
             
Sbjct: 231 VY 232

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 21/186 (11%)

Query: 194 EELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKL 253
                LA      L   S+T     S   LS + N +   +N   +  + +   ++L++L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKEL 68

Query: 254 YLSDNQLSGELPANIGN--NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG 311
           +LS NQ+S     ++    +L  L+ LS+  N               L+ L+LD N+L  
Sbjct: 69  HLSHNQIS-----DLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNEL-- 118

Query: 312 KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPN 371
           +    + +L+ LE L + +NKL  +    +  LS L  L LH N ++ +        L  
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT-NTGGLTR--LKK 173

Query: 372 LEELFL 377
           +  + L
Sbjct: 174 VNWIDL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 50/234 (21%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 73  SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
                LS +Q  +   +        S+  M                         +NL+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNI-----QSLAGMQFF----------------------TNLKE 67

Query: 133 LFLKYNMFHGKIP--STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
           L L +N    +I   S L    +L ELS++ N               L+RL L  N+L+ 
Sbjct: 68  LHLSHN----QISDLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRD 120

Query: 191 EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSL 250
              + L +L  LE+L ++NN L       +  LS L  LDL  N  T      +  L  +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174

Query: 251 QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYL 304
             + L+  +     P      L    T  +   D     P  I N     D  +
Sbjct: 175 NWIDLTGQKCV-NEPVKYQPELYITNT--VKDPDGRWISPYYISNGGSYVDGCV 225

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 84.8 bits (209), Expect = 1e-17
 Identities = 62/327 (18%), Positives = 106/327 (32%), Gaps = 24/327 (7%)

Query: 17  LLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELA 76
           LL             +++     S                +  ++ + L++    P    
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF-- 134
             S +   DL        +P   F +    S       L  + P  +C   +  E LF  
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 135 -LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP 193
            L        + S L SCK+L+EL   + +   TI   I  +  L  L   +  LQ    
Sbjct: 355 ELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQ---- 406

Query: 194 EELGNLAELEMLWLQN-----NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS 248
                L  ++ +         +             + +  L L+  + T +    +  L 
Sbjct: 407 -YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLL 463

Query: 249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNK 308
            +  L LS N+L   LP  +   L  L+ L    N     +   + NL +L +L L  N+
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519

Query: 309 LQG-KIPHEIGNLRKLEWLMLSHNKLV 334
           LQ       + +  +L  L L  N L 
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.8 bits (196), Expect = 4e-16
 Identities = 60/284 (21%), Positives = 96/284 (33%), Gaps = 20/284 (7%)

Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS-- 158
            M +LL +            P+  N+ S++    L     + ++P            S  
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329

Query: 159 --LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI 216
             +          ++     +L R  L   K    +  EL +  EL+ L  +N     TI
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI 388

Query: 217 ---PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
                ++  L          +    + P     L  L+  +L +N +             
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-------MEYA 441

Query: 274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
            ++ L L   D +  +   +  L  +T L L  N+L+  +P  +  LR LE L  S N L
Sbjct: 442 DVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
             V    + NL  L  L L NN L  S      V  P L  L L
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 5e-11
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 11/167 (6%)

Query: 72  PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPN------FCN 125
              L   S+L+A+D      Y     S F + + +      +     L            
Sbjct: 402 KETLQYFSTLKAVD-PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE 460

Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQ 185
           Q+  +  L L +N     +P  L++ + L  L  S N     +   + NL +L  L L  
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517

Query: 186 NKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL 231
           N+LQ     + L +   L +L LQ NSL             L ++  
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 68/351 (19%), Positives = 125/351 (35%), Gaps = 51/351 (14%)

Query: 80  SLQALDLSFNWF----YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQM----SNLE 131
            +Q L L          G + S++  + +L  ++ ++N L        C  +      LE
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 132 SLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGTIPKEIG-----NLTKLTRLN 182
            L L+Y          + S L +    +EL++S+N  +    + +      +  +L  L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 183 LRQNKLQGE----IPEELGNLAELEMLWLQNNSLTGT-----IPSSIFSLSSLLNLDLSL 233
           L    +  +    +   + + A L  L L +N L         P  +   S L  L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 234 NNFT----GIIPSSIGNLSSLQKLYLSDNQLSGE----LPANIGNNLPSLQTLSLYVNDF 285
              T    G +   +    SL++L L+ N+L  E    L   +      L++L +    F
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 286 SG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIG-----NLRKLEWLMLSHNKL--- 333
           +          +     L +L +  N+L+     E+          L  L L+   +   
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

Query: 334 -VGVVPAPIFNLSTLISLQLHNNSLSGS----LPSSADVPLPNLEELFLWE 379
               + A +    +L  L L NN L  +    L  S   P   LE+L L++
Sbjct: 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 65/357 (18%), Positives = 115/357 (32%), Gaps = 53/357 (14%)

Query: 75  LANLSSLQALDLSFNWF----YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN- 129
           L  L   Q + L            I S++    +L  +   +N L           +   
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 130 ---LESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGTIPKEIG-----NLTK 177
              ++ L L+     G     + STL +   L+EL LS N       + +         +
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 178 LTRLNLRQNKLQGE----IPEELGNLAELEMLWLQNNSLTGTIPSSI-----FSLSSLLN 228
           L +L L    L       +   L    + + L + NN +       +      S   L  
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 229 LDLSLNNFT----GIIPSSIGNLSSLQKLYLSDNQLSGE----LPANIGNNLPSLQTLSL 280
           L L     T      +   + + +SL++L L  N+L       L   + +    L+TL +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 281 YVNDFS----GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL-----RKLEWLMLSHN 331
           +    +    G + + +     L +L L  N+L  +    +         +LE L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 332 KLVGVVPAPIF-----NLSTLISLQLHNNSLSGS----LPSSADVPLPNLEELFLWE 379
                     F         L+ LQ+ NN L  +    L      P   L  L+L +
Sbjct: 324 SF-TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 57/298 (19%), Positives = 96/298 (32%), Gaps = 53/298 (17%)

Query: 60  LNISGLNLTGT----IPSELANLSSLQALDLSFNWFYGSIPSSI-----FNMSSLLSIYF 110
           L +   +L+      + S L      + L +S N    +    +      +   L ++  
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 111 NNN--------TLFGELPPNFCNQMSNLESLFLKYNMFHGK-----IPSTLSSCKQLREL 157
            +          L G +        ++L  L L  N           P  L    +LR L
Sbjct: 207 ESCGVTSDNCRDLCGIVASK-----ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 158 SLSSNYFS----GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAE-----LEMLWLQ 208
            +     +    G + + +     L  L+L  N+L  E    L          LE LW++
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 209 NNSLTGT----IPSSIFSLSSLLNLDLSLNNFT--GIIPSSIG---NLSSLQKLYLSDNQ 259
           + S T        S +     LL L +S N     G+     G     S L+ L+L+D  
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 260 LSGELPANIGNNL---PSLQTLSLYVNDFSGAIPKEIG-----NLTKLTDLYLDQNKL 309
           +S    +++   L    SL+ L L  N    A   ++          L  L L     
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 48/263 (18%)

Query: 60  LNISGLNLT----GTIPSELANLSSLQALDLSFNWFYGS-----IPSSIFNMSSLLSIYF 110
           L +    +T      +   +A+ +SL+ L L  N           P  +   S L +++ 
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 111 NNNTLFGE--------LPPNFCNQMSNLESLFLKYNMFHGKIPSTLS-----SCKQLREL 157
               +  +        L         +L+ L L  N    +    L         QL  L
Sbjct: 264 WECGITAKGCGDLCRVLRAK-----ESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 158 SLSSNYFSGTIPKEIGNL----TKLTRLNLRQNKLQGEIPEELG-----NLAELEMLWLQ 208
            + S  F+        ++      L  L +  N+L+     EL        + L +LWL 
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 209 NNSLT----GTIPSSIFSLSSLLNLDLSLNNFT-----GIIPSSIGNLSSLQKLYLSDNQ 259
           +  ++     ++ +++ +  SL  LDLS N         ++ S       L++L L D  
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 260 LSGELPANIGN---NLPSLQTLS 279
            S E+   +     + PSL+ +S
Sbjct: 439 WSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS----GAIPKEIGNLTKLTDLY 303
             +Q L +   +LS    A +   L   Q + L     +      I   +     L +L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 304 LDQNKLQGKIPHEIGNL-----RKLEWLMLSHNKL----VGVVPAPIFNLSTLISLQLHN 354
           L  N+L     H +         K++ L L +  L     GV+ + +  L TL  L L +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 355 NSLSGS 360
           N L  +
Sbjct: 123 NLLGDA 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
            ++  L+L  N  T  +P  + +   L  +DLS N  + +   S  N++ L  L LS N+
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 260 LSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQN 307
           L   +P    + L SL+ LSL+ ND S  +P+    +L+ L+ L +  N
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 26/129 (20%)

Query: 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214
            EL L  N F+  +PKE+ N   LT ++L  N++     +   N+ +L  L L  N L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS 274
            IP   F                         L SL+ L L  N +S  +P    N+L +
Sbjct: 92  CIPPRTFD-----------------------GLKSLRLLSLHGNDIS-VVPEGAFNDLSA 127

Query: 275 LQTLSLYVN 283
           L  L++  N
Sbjct: 128 LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 41/150 (27%), Positives = 58/150 (38%), Gaps = 33/150 (22%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
            N  L   +P  I     +  L L  N FT ++P  + N   L  + LS+N++       
Sbjct: 18  SNKGLK-VLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI------- 66

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEWL 326
                    TLS               N+T+L  L L  N+L+  IP      L+ L  L
Sbjct: 67  --------STLSNQSFS----------NMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLL 107

Query: 327 MLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
            L  N +  VVP   F +LS L  L +  N
Sbjct: 108 SLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 263 ELPANIGNNLP-SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLR 321
            LP  I    P  +  L L  N F+  +PKE+ N   LT + L  N++         N+ 
Sbjct: 24  VLPKGI----PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 322 KLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +L  L+LS+N+L   +P   F+ L +L  L LH N +S  +P  A   L  L  L +
Sbjct: 79  QLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 28/130 (21%)

Query: 82  QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH 141
             L L  N F   +P  + N   L  I  +NN +   L     + M+ L +L L YN   
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYN--- 88

Query: 142 GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL-GNLA 200
                      +LR   +    F G        L  L  L+L  N +   +PE    +L+
Sbjct: 89  -----------RLR--CIPPRTFDG--------LKSLRLLSLHGNDIS-VVPEGAFNDLS 126

Query: 201 ELEMLWLQNN 210
            L  L +  N
Sbjct: 127 ALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 203 EMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS 261
             L L +N L       +F  L  L+ L+L  N  TGI P++    S +Q+L L +N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 262 GELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQN 307
            E+   +   L  L+TL+LY N  S  +      +L  LT L L  N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
           IP  I       +L L+DN+L       +   LP L  L L  N  +G  P      + +
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 300 TDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
            +L L +NK++ +I +++   L +L+ L L  N++   V    F +L++L SL L +N
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 131 ESLFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL 188
             L L  N   G+I S         L +L L  N  +G  P      + +  L L +NK+
Sbjct: 32  TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 189 QGEIPEEL-GNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLN 234
           + EI  ++   L +L+ L L +N ++  +    F  L+SL +L+L+ N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 265 PANIGNNLP-SLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLR 321
           P +I    P     L L  N+        + G L  L  L L +N+L   I         
Sbjct: 24  PRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGAS 78

Query: 322 KLEWLMLSHNKLVGVVPAPIFN-LSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            ++ L L  NK+   +   +F  L  L +L L++N +S  +   +   L +L  L L
Sbjct: 79  HIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNL 133

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 32/133 (24%)

Query: 82  QALDLSFNWFYGSIPSSIFN-MSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMF 140
             L L+ N         +F  +  L+ +    N L   + PN     S+++ L L  N  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGEN-- 88

Query: 141 HGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELG--- 197
                       +++   +S+  F G        L +L  LNL  N++   +    G   
Sbjct: 89  ------------KIK--EISNKMFLG--------LHQLKTLNLYDNQISC-VMP--GSFE 123

Query: 198 NLAELEMLWLQNN 210
           +L  L  L L +N
Sbjct: 124 HLNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
            +  LT ++P+ I S  S   L+L  N    +       L+ L KL LS NQ+   LP  
Sbjct: 15  NSKGLT-SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG 70

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQNKLQGKIPHEI-GNLRKLEW 325
           + + L  L  L L+ N    ++P  +   LT+L +L LD N+L+  +P  I   L  L+ 
Sbjct: 71  VFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQK 128

Query: 326 LMLSHN 331
           + L  N
Sbjct: 129 IWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTK 298
           +P+ I   SS  +L L  N+L   LP  + + L  L  LSL  N    ++P  +   LTK
Sbjct: 22  VPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 299 LTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
           LT LYL +NKLQ  +P+ +   L +L+ L L  N+L   VP  IF  L++L  + LH N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           IPS+         L L SN            LT+LT+L+L QN++Q         L +L 
Sbjct: 26  IPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 204 MLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQ 259
           +L+L  N L  ++P+ +F  L+ L  L L  N    +       L+SLQK++L  N 
Sbjct: 80  ILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 265 PANIGNNLP-SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI-GNLRK 322
           P  I    P S   L L  N            LT+LT L L QN++Q  +P  +   L K
Sbjct: 23  PTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 323 LEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           L  L L  NKL   +P  +F  L+ L  L L  N L  S+P      L +L++++L
Sbjct: 78  LTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 4e-12
 Identities = 60/431 (13%), Positives = 122/431 (28%), Gaps = 113/431 (26%)

Query: 14  QQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDV----RSHRVAALNISGLNLTG 69
           +  LLVL      +      +N    ++F     ++C +    R  +V   +      T 
Sbjct: 244 ENCLLVL-----LN-----VQNAKAWNAF----NLSCKILLTTRFKQVT--DFLSAATTT 287

Query: 70  TIPSE--LANLSSLQALDLSFNWF---YGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC 124
            I  +     L+  +   L   +       +P  +   +    +     ++  E   +  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-L-----SIIAESIRDGL 341

Query: 125 NQMSNLESLFLKYNMFHGKIPSTLSSC-KQLRELSLSSNYFSGTI-PKEIGNLTKLTRLN 182
               N    +   N    K+ + + S    L        +   ++ P             
Sbjct: 342 ATWDN----WKHVN--CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---------- 385

Query: 183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSI---FSLSSLLNLDLSLNNFTGI 239
                    IP  L     L ++W     +  +    +       SL+         T  
Sbjct: 386 --------HIPTIL-----LSLIWFD---VIKSDVMVVVNKLHKYSLVEKQP--KESTIS 427

Query: 240 IPS-------SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG---AI 289
           IPS        + N  +L +  +  +     +P    ++      L  Y     G     
Sbjct: 428 IPSIYLELKVKLENEYALHRSIV--DHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 290 PKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLIS 349
            +    +T    ++LD   L+ KI H+        W             A    L+TL  
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHD-----STAW------------NASGSILNTLQQ 526

Query: 350 LQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPT 409
           L+ +   +  + P   +  +  + + FL +       S   D+    +M           
Sbjct: 527 LKFYKPYICDNDPKY-ERLVNAILD-FLPKIEENLICSKYTDLLRIALM--------AED 576

Query: 410 DEIFNGEMTLR 420
           + IF  E   +
Sbjct: 577 EAIF--EEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 82/548 (14%), Positives = 168/548 (30%), Gaps = 162/548 (29%)

Query: 34  KNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLT-----------GTIPSELANLSSLQ 82
           + +N +  F  +  V+   R      L  + L L            G+  + +A L    
Sbjct: 118 RLYNDNQVFAKYN-VS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCL 172

Query: 83  ALDL----SFNWFYGSI-----PSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL 133
           +  +     F  F+ ++     P ++  M            L  ++ PN+ ++  +  ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEML---------QKLLYQIDPNWTSRSDHSSNI 223

Query: 134 FLKYN---------MFHGKIPSTL----------------SSCKQL---RELSLSSNYFS 165
            L+ +         +      + L                 SCK L   R   + +++ S
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLS 282

Query: 166 GTIPKEI------GNLTKLTRLNLRQNKLQ---GEIPEE--LGNLAELEMLW--LQNNSL 212
                 I        LT     +L    L     ++P E    N   L ++   +++   
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 213 TGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS--LQKLYLSDNQLSGELPANIGN 270
           T           +  +++   +  T II SS+  L     +K++   ++LS   P +   
Sbjct: 343 T---------WDNWKHVN--CDKLTTIIESSLNVLEPAEYRKMF---DRLS-VFPPSA-- 385

Query: 271 NLPSLQTLSLYVNDFSGAIPKEIGN-LTKLTDLYLDQNKLQGKIPH-------EIGNLRK 322
           ++P+   LSL   D   +    + N L K + +     +    IP        ++ N   
Sbjct: 386 HIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 323 LEWLMLSHNKLVGVVPAP-IFNLSTLISLQL----------HNNSLSGSLPSSADVPLPN 371
           L      H  +V     P  F+   LI   L          H   L              
Sbjct: 445 L------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---LKNIEHPERMTLFR- 494

Query: 372 LEELFL---WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLL 427
              +FL   +    E ++  +   +N    I+ T    K     I + +    R VN + 
Sbjct: 495 --MVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI- 548

Query: 428 SISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLET 487
                                     + F+  +     + S   +  +  L+ + + +  
Sbjct: 549 --------------------------LDFLPKIEENL-ICSKYTDLLRIALMAEDEAIFE 581

Query: 488 RCLKMLRR 495
              K ++R
Sbjct: 582 EAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 65/409 (15%), Positives = 126/409 (30%), Gaps = 126/409 (30%)

Query: 82  QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH 141
           + L +++ +    I  +     S+++  +              +++ N   +F KYN+  
Sbjct: 85  EVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQR----------DRLYNDNQVFAKYNVSR 133

Query: 142 GKIPSTLSSCKQLRELSLSSNYF------SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE 195
            +    L     L EL  + N        SG   K     T +        K+Q ++  +
Sbjct: 134 LQPYLKLRQA--LLELRPAKNVLIDGVLGSG---K-----TWVALDVCLSYKVQCKMDFK 183

Query: 196 -----LGNLAE----LEML----------WLQNNSLTGTIPSSIFSLS------------ 224
                L N       LEML          W   +  +  I   I S+             
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 225 --SLLNLD-----LSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT 277
              LL L       + N F         NLS  + L  +           + + L +  T
Sbjct: 244 ENCLLVLLNVQNAKAWNAF---------NLSC-KILLTTRF-------KQVTDFLSAATT 286

Query: 278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI--GNLRKL------------ 323
             + ++  S  +  +   +  L   YLD       +P E+   N R+L            
Sbjct: 287 THISLDHHSMTLTPD--EVKSLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 324 ---EWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEY 380
               W  ++ +KL  ++ + +  L      ++  + LS   P SA +P   L    +W  
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLS-VFPPSAHIPTILLS--LIWFD 398

Query: 381 GREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI 429
                      I +  ++++                +  ++     +SI
Sbjct: 399 ----------VIKSDVMVVVNKLHKYS---------LVEKQPKESTISI 428

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 56/335 (16%), Positives = 110/335 (32%), Gaps = 70/335 (20%)

Query: 75  LANLSSLQALDLSFNWFYG----SIPSSIFNMSSLLSIYFNNNTL-------FGE-LPPN 122
           +A  S ++   L  +        S+ + +    S+  I  + NT+         E +   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 123 FCNQMSNLESLFLKYNMFHGKIPST-----------LSSCKQLRELSLSSNYFSGTIPKE 171
                 +LE      ++F G++              L  C +L  + LS N F  T  + 
Sbjct: 60  -----KDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 172 IGNL----TKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLL 227
           + +     T L  L L  N L    P+    +A      LQ  ++     ++      L 
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA----LQELAVNKKAKNA----PPLR 162

Query: 228 NLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSGE-----LPANIGNNLPSLQTL 278
           ++    N            +  +   L  + +  N +  E     L   +      L+ L
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVL 221

Query: 279 SLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL------RKLEWLML 328
            L  N F+     A+   + +   L +L L+   L  +    + +         L+ L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 329 SHNKL-----VGVVPAPIFNLSTLISLQLHNNSLS 358
            +N++       +       +  L+ L+L+ N  S
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 45/260 (17%), Positives = 88/260 (33%), Gaps = 59/260 (22%)

Query: 172 IGNLTKLTRLNLRQNKLQGE----IPEELGNLAELEMLWLQNNSLTGT----IPSSIFSL 223
           +   + +   +L+ + +  E    +   L     ++ + L  N++       +  +I S 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 224 SSLLNLDLSLNNFTG-----------IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL 272
             L   + S + FTG           ++  ++     L  + LSDN         + + L
Sbjct: 60  KDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 273 ---PSLQTLSLYVNDFS-------------GAIPKEIGNLTKLTDLYLDQNKLQGK---- 312
                L+ L L+ N                 A+ K+  N   L  +   +N+L+      
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 313 IPHEIGNLRKLEWLMLSHNKL--VGVVPA---PIFNLSTLISLQLHNN--------SLSG 359
                 + R L  + +  N +   G+       +     L  L L +N        +L+ 
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 360 SLPSSADVPLPNLEELFLWE 379
           +L S      PNL EL L +
Sbjct: 239 ALKS-----WPNLRELGLND 253

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 40/250 (16%), Positives = 69/250 (27%), Gaps = 50/250 (20%)

Query: 75  LANLSSLQALDLSFNWF-------------YGSIPSSIFNMSSLLSIYFNNNTLFGELPP 121
           L+  + L+ L L  N                 ++     N   L SI    N L      
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 122 NFCN---QMSNLESLFLKYNMFHGK-----IPSTLSSCKQLRELSLSSNYFSGT----IP 169
            +         L ++ +  N    +     +   L+ C++L+ L L  N F+      + 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 170 KEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNL 229
             + +   L  L L    L        G  A ++      N               L  L
Sbjct: 238 IALKSWPNLRELGLNDCLLSAR-----GAAAVVDAFSKLEN-------------IGLQTL 279

Query: 230 DLSLNNFT-----GIIPSSIGNLSSLQKLYLSDNQLS--GELPANIGNNLPSLQTLSLYV 282
            L  N         +       +  L  L L+ N+ S   ++   I     +     L  
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339

Query: 283 NDFSGAIPKE 292
            D    +  E
Sbjct: 340 LDDMEELTDE 349

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 65.0 bits (157), Expect = 1e-11
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 18/148 (12%)

Query: 150 SCKQLRELSLSSNYFSGTIPKEIG--NLTKLTRLNL---RQNKLQGEIPEEL------GN 198
               L+ L + S     ++ ++I   +L  L +L L    ++                  
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 199 LAELEMLWLQNNSLTGTIPSSIFS---LSSLLNLDLSLNNFTG----IIPSSIGNLSSLQ 251
              L+ L + +      +         L  L  +D+S    T     ++   +  +  L+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 252 KLYLSDNQLSGELPANIGNNLPSLQTLS 279
            + +  N LS E+   +  +LP    +S
Sbjct: 311 FINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 189 QGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIG--N 246
           Q ++   L  +  L  L ++  +    +        +L +L++        +   I   +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 247 LSSLQKL--------YLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN--- 295
           L +L+KL        Y  D  ++   P    +  P+L+ L +   +    + +       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 296 LTKLTDLYLDQNKLQGK----IPHEIGNLRKLEWLMLSHNKL 333
           L +L  + +    L  +    +   +  ++ L+++ + +N L
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 9e-07
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 23/190 (12%)

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSIF--SLSSLLNLDLSLNNF----TGIIPSSIG 245
           I E     A  E L+  +        S I    LS +L+    LNN     T  +     
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 246 NLSSLQKLYLSDNQLSGELPANIGN-NLPSLQTLSLYV---NDFSGAIPKEI------GN 295
              +L+ L +    L   +  +I   +LP+L+ L LYV   +                  
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGN---LRKLEWLMLSHNKL----VGVVPAPIFNLSTLI 348
              L  L +   + Q  +         L +LE + +S   L      ++   +  +  L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 349 SLQLHNNSLS 358
            + +  N LS
Sbjct: 311 FINMKYNYLS 320

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233
           N  +   L+LR  K+   I      L + + +   +N +          L  L  L ++ 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73

Query: 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
           N    I       L  L +L L++N L      +   +L SL  L +  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 38/153 (24%)

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           + L+         +   N    ++L L   ++   +  N+G  L     +    N     
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDN----- 52

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLI 348
                  + KL                    LR+L+ L++++N++  +       L  L 
Sbjct: 53  ------EIRKLDGF---------------PLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91

Query: 349 SLQLHNNSLSGSLPSSADV----PLPNLEELFL 377
            L L NNSL        D+     L +L  L +
Sbjct: 92  ELILTNNSLV----ELGDLDPLASLKSLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 97  SSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPS--TLSSCKQL 154
           +   N      +      +   +  N    +   +++    N    +I         ++L
Sbjct: 13  AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRL 66

Query: 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ--GEIPEELGNLAELEMLWLQNNSL 212
           + L +++N            L  LT L L  N L   G++ + L +L  L  L +  N +
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPV 125

Query: 213 T 213
           T
Sbjct: 126 T 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 15/146 (10%)

Query: 143 KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
           K+ +TLS+ K  + L+LS+N     I   +  +  L  L+L +N ++ +I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 203 EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIP-SSIGNLSSLQKLYLSDNQLS 261
           E LW+  N +  ++ S I  L +L  L +S N  T       +  L  L+ L L+ N L 
Sbjct: 96  EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 262 GELPANIG---------NNLPSLQTL 278
            +   N             LP+L+ L
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 178 LTRLNLRQNKLQGEIPEELGNLAELEMLWLQN--NSLTGTIPSSIFSLSSLLNLDLSLNN 235
           + +    ++ ++     +     E E + L      +   + +++ +L +  +L LS NN
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNN 59

Query: 236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN 295
              I  SS+  + +L+ L L  N +      N+     +L+ L +  N  +      I  
Sbjct: 60  IEKI--SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SGIEK 113

Query: 296 LTKLTDLYLDQNKLQGKIPHEIGNLR---KLEWLMLSHNKLV 334
           L  L  LY+  NK+      EI  L    KLE L+L+ N L 
Sbjct: 114 LVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLY 153

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 5e-11
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 5/113 (4%)

Query: 150 SCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE-LGNLAELEMLWLQ 208
                  L  + +         +     LT L +   +    +    L  L EL  L + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 209 NNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
            + L   +    F     L  L+LS N    +   ++  L SLQ+L LS N L
Sbjct: 65  KSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 191 EIPEELGNLAELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSS 249
           +    L     L  L+++N      +       L  L NL +  +    + P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 250 LQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF 285
           L +L LS N L   L       L SLQ L L  N  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 271 NLPSLQTLSLYVNDFSGAIPKE-IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLS 329
              +L  L +        +    +  L +L +L + ++ L+   P       +L  L LS
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 330 HNKLVGVVPAPIFNLSTLISLQLHNNSL 357
            N L  +    +  LS L  L L  N L
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLST 346
                +     LT+LY++  +    +    +  L +L  L +  + L  V P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 347 LISLQLHNNSLSGSLPSSADVPLPNLEELFLWE 379
           L  L L  N+L  SL       L  L+EL L  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLS-LQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
                +    +L  +Y  N      L       +  L +L +  +      P       +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ 189
           L  L+LS N    ++  +      L  L L  N L 
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 70  TIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMS 128
                L    +L  L +        +       +  L ++    + L   + P+  +   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYF 164
            L  L L +N        T+     L+EL LS N  
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 44/280 (15%)

Query: 75  LANLSSLQALDLSFNWFYGSIPSSIF-----NMSSLLSIYFNNNTLFGE----LPPNFCN 125
            +    + +LDLS N  Y      +        +S+ S+  + N+L  +    L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 126 QMSNLESLFLKYNMFHGK----IPSTLSSCK-QLRELSLSSNYFSGTIPKEIGNL----- 175
             +N+ SL L  N    K    +  TL++    +  L L  N FS     E         
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 176 TKLTRLNLRQNKLQGEIPEELGNLAE-----LEMLWLQNNSLTGTIPSSIFSL-----SS 225
             +T LNLR N L  +  +EL  +       +  L L+ N+L     + +        +S
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 226 LLNLDLSLNNFT-----GIIPSSIGNLSSLQKLYLSDNQLSGE---LPANIGNNLPSLQT 277
           + +LDLS N         +        + +  L L  N L G        + ++L  LQT
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 278 LSLYVNDFSG-------AIPKEIGNLTKLTDLYLDQNKLQ 310
           + L  +           A+     N+ K+  +  +  ++ 
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 51/263 (19%), Positives = 85/263 (32%), Gaps = 51/263 (19%)

Query: 148 LSSCKQLRELSLSSNYFSGTIPKEIG-----NLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
            S    +  L LS N        E+          +T LNL  N L  +  +EL      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV----- 72

Query: 203 EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT-----GIIPSSIGNLSSLQKLYLSD 257
           ++L     ++T              +L+LS N  +      ++ +      ++  L L  
Sbjct: 73  QILAAIPANVT--------------SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 258 NQLSGE----LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL-----TKLTDLYLDQNK 308
           N  S +          N   S+ +L+L  ND       E+  +       +  L L  N 
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 309 LQGKIPHEIGNL-----RKLEWLMLSHNKL-----VGVVPAPIFNLSTLISLQLHNNSLS 358
           L  K   E+          +  L LS N L       +        + ++SL L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 359 GS---LPSSADVPLPNLEELFLW 378
           G            L +L+ ++L 
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLD 261

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 31/151 (20%), Positives = 47/151 (31%), Gaps = 19/151 (12%)

Query: 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE----LPANIGNNLPSLQTLSLYV 282
           +N  L+L+  +  +         +  L LS N L       L     N   S+ +L+L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 283 NDFSGAIPKEIG-----NLTKLTDLYLDQNKLQGKIPHEIGNL-----RKLEWLMLSHNK 332
           N        E+          +T L L  N L  K   E+          +  L L  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 333 L-----VGVVPAPIFNLSTLISLQLHNNSLS 358
                      A     +++ SL L  N L 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 174 NLTKLTRLNLRQNKLQ-GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS 232
               +  L L   K   G+I         LE L L N  L     S++  L  L  L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
            N   G +      L +L  L LS N+L           L  L++L L+  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
             +++++L L + + +      +     +L+ LSL            +  L KL  L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVP-APIFNLSTLISLQLHNNSLS 358
           +N++ G +      L  L  L LS NKL  +    P+  L  L SL L N  ++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160
             +++  +  +N             +  NLE L L        + S L    +L++L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQ--GEIPEELGNLAELEMLWLQNNSLT 213
            N   G +      L  LT LNL  NKL+    + E L  L  L+ L L N  +T
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 284 DFSGAIPKEIG--NLTKLTDLYLDQNKLQ-GKIPHEIGNLRKLEWLMLSHNKLVGVVPAP 340
           D    I  E+       + +L LD  K   GKI         LE+L L +  L+ V  + 
Sbjct: 9   DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN 66

Query: 341 IFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           +  L  L  L+L  N + G L   A+  LPNL  L L
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTHLNL 102

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTK 298
           +P+ I   +  Q+L+L++NQ++ +L   + ++L +LQ L    N  + AIP  +   LT+
Sbjct: 27  VPAGI--PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 299 LTDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHN 331
           LT L L+ N L+  IP     NL+ L  + L +N
Sbjct: 83  LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
           QN  L  ++P+ I   +    L L+ N  T + P    +L +LQ+LY + N+L+  +P  
Sbjct: 20  QNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTG 75

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQN 307
           + + L  L  L L  N    +IP+    NL  LT +YL  N
Sbjct: 76  VFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSL 226
           +P  I   T   RL L  N++    P    +L  L+ L+  +N LT  IP+ +F  L+ L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN 258
             LDL+ N+   I   +  NL SL  +YL +N
Sbjct: 84  TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
           ++ + L+L  N      P        L++L  +SN  +  IP  +   LT+LT+L+L  N
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91

Query: 187 KLQGEIPEELG---NLAELEMLWLQNN 210
            L+  IP   G   NL  L  ++L NN
Sbjct: 92  HLKS-IPR--GAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN 267
              SL  ++P+ I   ++   L L  N  T + P     L+ L +L L +NQL+  LPA 
Sbjct: 17  SGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG 72

Query: 268 IGNNLPSLQTLSLYVNDFSGAIPKEI-GNLTKLTDLYLDQN 307
           + + L  L  LSL  N    +IP+    NL  LT ++L  N
Sbjct: 73  VFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 31/118 (26%)

Query: 240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
           +P+ I   ++ Q LYL DNQ+                 L   V D           LT+L
Sbjct: 24  VPTGI--PTTTQVLYLYDNQI---------------TKLEPGVFD----------RLTQL 56

Query: 300 TDLYLDQNKLQGKIPHEI-GNLRKLEWLMLSHNKLVGVVPAPIF-NLSTLISLQLHNN 355
           T L LD N+L   +P  +   L +L  L L+ N+L   +P   F NL +L  + L NN
Sbjct: 57  TRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 168 IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSL 226
           +P  I   T    L L  N++    P     L +L  L L NN LT  +P+ +F  L+ L
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80

Query: 227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN 258
             L L+ N    I   +  NL SL  ++L +N
Sbjct: 81  TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQN 186
           +  + L+L  N      P       QL  L L +N  +  +P  +   LT+LT+L+L  N
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88

Query: 187 KLQGEIPEE-LGNLAELEMLWLQNN 210
           +L+  IP     NL  L  +WL NN
Sbjct: 89  QLKS-IPRGAFDNLKSLTHIWLLNN 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 174 NLTKLTRLNLRQNKLQ-GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS 232
             + +  L L  ++   G++        ELE L   N  LT +I +++  L+ L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN 283
            N  +G +        +L  L LS N++           L +L++L L+  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 101 NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS 160
             S +  +  +N+           ++   LE L          I + L    +L++L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQG-EIPEELGNLAELEMLWLQNNSLT 213
            N  SG +         LT LNL  NK++     E L  L  L+ L L N  +T
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 268 IGNNLPSLQTLSLYVNDFS-GAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL 326
                  ++ L L  +  + G +        +L  L      L   I + +  L KL+ L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 327 MLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
            LS N++ G +         L  L L  N +           L NL+ L L
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 37/252 (14%), Positives = 72/252 (28%), Gaps = 17/252 (6%)

Query: 70  TIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELP-PNFCNQM 127
            I +  ++ + L+ + L            I  +  +   +  ++   F            
Sbjct: 96  WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155

Query: 128 SNLESLFLKYNMFHGKIPSTLS----SCKQLRELSLSSNYFSGT---IPKEIGNLTKLTR 180
            NL+ L L+ +         LS    +   L  L++S      +   + + +     L  
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 181 LNLRQNKLQ---GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT 237
           L L +         + +    L EL                   +LS    L   L+ F 
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL-RCLSGFW 274

Query: 238 GIIPSSI----GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI 293
             +P+ +       S L  L LS   +       +    P LQ L +        +    
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 294 GNLTKLTDLYLD 305
                L +L + 
Sbjct: 335 STCKDLRELRVF 346

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIF---NGEMTLRRWVNDLLSI-SVMEV 434
           EY   G+ S   D++ +G+M++E  T ++  D      + ++ L  WV  LL    +  +
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 264

Query: 435 VDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESP 469
           VD +L      ++  +E  +  +  +A+ CT  SP
Sbjct: 265 VDVDL----QGNYKDEE--VEQLIQVALLCTQSSP 293

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 45/263 (17%), Positives = 102/263 (38%), Gaps = 17/263 (6%)

Query: 125 NQMSNLESLFLKYNMFHGKI-PSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLN 182
            ++++ ESL+   ++    + P           ++          P  E  +  ++  ++
Sbjct: 40  YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99

Query: 183 LRQNKL-QGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS-LNNFTGII 240
           L  + +    +   L   ++L+ L L+   L+  I +++   S+L+ L+LS  + F+   
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 241 PSSIG-NLSSLQKLYLSD-NQLSGE-LPANIGNNLPSLQTLSLY-----VNDFSGAIPKE 292
             ++  + S L +L LS     + + +   + +   ++  L+L      +      +   
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--SDLSTL 217

Query: 293 IGNLTKLTDLYLDQ-NKLQGKIPHEIGNLRKLEWLMLSHNKLVG-VVPAPIFNLSTLISL 350
           +     L  L L     L+     E   L  L+ L LS    +       +  + TL +L
Sbjct: 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277

Query: 351 QLHNNSLSGSLPSSADVPLPNLE 373
           Q+      G+L    +  LP+L+
Sbjct: 278 QVFGIVPDGTLQLLKEA-LPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 34/266 (12%)

Query: 74  ELANLSSL-QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES 132
            LA+  SL Q LDL+    +  +   +    S   I F     F + P         ++ 
Sbjct: 41  RLASDESLWQTLDLTGKNLHPDVTGRLL---SQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 133 LFLKYNMFHGK-IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE 191
           + L  ++     +   LS C +L+ LSL     S  I   +   + L RLNL        
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---- 153

Query: 192 IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS-LNNFT--GIIPSSIGNLS 248
                              +L  T+ S   S S L  L+LS   +FT   +  +      
Sbjct: 154 --------------GFSEFALQ-TLLS---SCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 249 SLQKLYLSD--NQLSGELPANIGNNLPSLQTLSL-YVNDFSGAIPKEIGNLTKLTDLYLD 305
           ++ +L LS     L     + +    P+L  L L           +E   L  L  L L 
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 306 Q-NKLQGKIPHEIGNLRKLEWLMLSH 330
           +   +  +   E+G +  L+ L +  
Sbjct: 256 RCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 31/224 (13%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++ GL L+  I + LA  S+L  L+LS          S F+  +L ++  + + L  EL
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSG--------CSGFSEFALQTLLSSCSRL-DEL 173

Query: 120 PPNFCNQMS-------------NLESLFLKY---NMFHGKIPSTLSSCKQLRELSLSSNY 163
             ++C   +              +  L L     N+    + + +  C  L  L LS + 
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233

Query: 164 F-SGTIPKEIGNLTKLTRLNLRQ-NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF 221
                  +E   L  L  L+L +   +  E   ELG +  L+ L +          +   
Sbjct: 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV---PDGTLQL 290

Query: 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELP 265
              +L +L ++ ++FT I   +IGN  + Q+++    +L+ + P
Sbjct: 291 LKEALPHLQINCSHFTTIARPTIGNKKN-QEIWGIKCRLTLQKP 333

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIF-NGEMTLRRWVNDLLSIS-VMEVVD 436
           EY  +GR++   D+Y+FG+++ E   A+    +      + L  W  +  +   + ++VD
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVD 270

Query: 437 ANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIR 471
            NL        + K        + A++C   S   
Sbjct: 271 PNLADKIRPESLRK------FGDTAVKCLALSSED 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 27/229 (11%)

Query: 129 NLESLFLKYNMFHGKIPSTLS----SCKQLRELSLSSNYFSG----TIPKEIGNLTKLTR 180
            +++L ++ + F  K    L         L  L+     F+      +     N   L  
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 181 LNLRQNKL--QGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
           + +   ++       +   NL E     L  +        ++     L  L LS      
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY--VNDFSGAIPKEIGNL 296
           + P      + ++KL L    L  E    +    P+L+ L     + D    +       
Sbjct: 285 M-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG--LEVLAQYC 341

Query: 297 TKLTDLYLDQNKLQGKIPHEIG------------NLRKLEWLMLSHNKL 333
            +L  L +++   +  +  E G              ++LE++ +  + +
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 44/274 (16%), Positives = 76/274 (27%), Gaps = 52/274 (18%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYG--SIPSSIFNMSSLLSIYFNNNTLFG 117
                LN    +P +  NL   + L      + G   +P      + +  +      L  
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 118 ELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT- 176
           E       +  NLE L  +  +    +      CKQL+ L +        +  E G ++ 
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 177 -----------KLTRLNLRQNKLQGE----IPEELGNLAELEMLWLQN-NSLTGTIPSSI 220
                      +L  + +  + +  E    I   L NL +  ++ L     +T     + 
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427

Query: 221 F-----SLSSLLNLDLSLN------------------------NFTGIIPSSIGNLSS-- 249
                     L      L                          + G     +   S   
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487

Query: 250 --LQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
             LQKL +     S    A     LPSL+ L + 
Sbjct: 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 45/240 (18%)

Query: 78  LSSLQALDLSFNWFYGSIPSSI-----FNMSSLLSIYFNNN--------TLFGELPPNFC 124
               + L L  N         +      +   + ++  +NN         L   L  N  
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-- 182

Query: 125 NQMSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL----T 176
              +++  L L +     +    + + L   +QL+EL+++ N    T    +        
Sbjct: 183 ---TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 177 KLTRLNLRQNKLQ-------GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNL 229
            L  L+L  N+L         ++       A + +   +  +++         LS +   
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS---EYWSVILSEVQRN 296

Query: 230 DLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL---PSLQTLSLYVNDFS 286
             S +         +          L D++ +   P      L     ++ L   +    
Sbjct: 297 LNSWDRARVQRHLELLLRD------LEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 43/230 (18%), Positives = 68/230 (29%), Gaps = 52/230 (22%)

Query: 23  HVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRV-----------AALNISGLNLTGTI 71
           H  +    F  ++ +T+S+         D  + R+             LN         +
Sbjct: 58  HYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQL 117

Query: 72  PSELANL--SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN 129
              ++     S QALDL        + S    ++  + +  N  +            +  
Sbjct: 118 KLIMSKRYDGSQQALDLK------GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPE 171

Query: 130 LESLFLKYNMFHG--KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
           L SL L  N  +    + S +     L+ L+LS N       K    L K+  L L +  
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-----KSERELDKIKGLKLEE-- 224

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSS-------IFSLSSLLNLD 230
                            LWL  NSL  T                 LL LD
Sbjct: 225 -----------------LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.79
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.76
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.76
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.64
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	98.43
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.43
3soc_A	322	Activin receptor type-2A; structural genomics cons	98.27
3q4u_A	301	Activin receptor type-1; structural genomics conso	98.26
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	98.21
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.18
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.18
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.03
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	98.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	97.96
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	97.95
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	97.95
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	97.94
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	97.93
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	97.92
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	97.92
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	97.89
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	97.88
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	97.88
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	97.87
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	97.86
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	97.83
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	97.82
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	97.82
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.82
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	97.81
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	97.81
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	97.78
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	97.77
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	97.77
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.74
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	97.74
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	97.73
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	97.72
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	97.72
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	97.72
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	97.72
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	97.71
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	97.71
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	97.7
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	97.69
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	97.69
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	97.69
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	97.69
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	97.68
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	97.67
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	97.67
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	97.66
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	97.66
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.66
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	97.66
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	97.65
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	97.65
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.64
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	97.63
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	97.62
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	97.62
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	97.61
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.6
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	97.6
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	97.59
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	97.59
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	97.58
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	97.58
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	97.57
2a19_B	284	Interferon-induced, double-stranded RNA-activated	97.56
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	97.56
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	97.55
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.55
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	97.55
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	97.55
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	97.55
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	97.53
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	97.52
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	97.52
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	97.51
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	97.51
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	97.5
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	97.49
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	97.47
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	97.45
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	97.41
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	97.41
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	97.41
3an0_A	340	Dual specificity mitogen-activated protein kinase;	97.4
3fme_A	290	Dual specificity mitogen-activated protein kinase;	97.4
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	97.39
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	97.38
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	97.36
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.35
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	97.34
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	97.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	97.31
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.29
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.28
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	97.27
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
3uqc_A	286	Probable conserved transmembrane protein; structur	97.23
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	97.23
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	97.23
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	97.21
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.2
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	97.19
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	97.19
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	97.18
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	97.17
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	97.15
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	97.14
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	97.12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	97.09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.09
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	97.08
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	97.08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	97.07
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	97.07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	97.07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.07
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	97.06
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	97.05
3bhy_A	283	Death-associated protein kinase 3; death associate	97.05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	97.05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	97.05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	97.03
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	97.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	96.98
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	96.98
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	96.97
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	96.96
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	96.96
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	96.96
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	96.95
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	96.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	96.94
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	96.94
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	96.94
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	96.92
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	96.91
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	96.9
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	96.9
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	96.89
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	96.88
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	96.88
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	96.87
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	96.87
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	96.85
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	96.85
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	96.84
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	96.84
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	96.84
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	96.84
3o0g_A	292	Cell division protein kinase 5; kinase activator c	96.83
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	96.8
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	96.77
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	96.77
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	96.77
3niz_A	311	Rhodanese family protein; structural genomics, str	96.76
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	96.75
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	96.74
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	96.73
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	96.72
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	96.69
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	96.69
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	96.69
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	96.69
3ork_A	311	Serine/threonine protein kinase; structural genomi	96.67
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	96.67
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	96.65
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	96.65
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	96.65
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	96.64
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	96.62
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	96.61
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	96.61
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	96.6
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	96.59
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	96.59
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	96.56
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	96.56
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	96.56
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	96.56
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	96.56
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	96.54
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	96.52
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	96.47
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	96.44
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	96.43
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	96.42
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	96.42
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	96.4
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	96.39
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	96.38
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	96.38
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	96.38
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	96.36
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	96.34
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	96.34
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	96.31
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	96.31
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	96.3
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	96.3
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	96.26
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	96.22
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	96.22
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	96.2
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	96.2
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	96.16
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	96.12
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	96.11
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	96.06
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	96.02
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	96.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	95.95
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	95.94
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	95.87
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	95.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.86
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	95.81
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	95.78
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	95.75
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	95.72
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	95.64
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	95.63
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	95.6
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.58
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	95.53
3rp9_A	458	Mitogen-activated protein kinase; structural genom	95.53
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	95.51
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	95.23
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	95.12
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	94.99
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	94.92
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	94.91
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	94.82
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	94.71
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.69
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	94.64
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	94.57
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	94.56
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	94.24
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	93.53
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	92.55

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-47  Score=411.11  Aligned_cols=349  Identities=30%  Similarity=0.464  Sum_probs=238.9

Q ss_pred             cCCCCChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCCccceeeeCCCCCCeEEEEcCCCCCccc---Cch--------
Q 011044            5 ANTTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGT---IPS--------   73 (495)
Q Consensus         5 ~~~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~---~~~--------   73 (495)
                      +++.+.++|++||++||+++. ||. .++ +|+.+.++|.|.||+|+  .++|+.|+|+++.+.|.   +++        
T Consensus         5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLP-DKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCS-CTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             ccccCCHHHHHHHHHHHhhCC-Ccc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            334447789999999999994 887 777 99988899999999998  37999999999999887   554        


Q ss_pred             ---------------hccCCCCCCEEeCcCCcCCccCCc--cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044           74 ---------------ELANLSSLQALDLSFNWFYGSIPS--SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK  136 (495)
Q Consensus        74 ---------------~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~  136 (495)
                                     .++++++|++|+|++|.+.+.+|.  .+.++++|++|++++|.+.+.+|..+...+++|++|+++
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  159 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS  159 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence                           455566666666666666666665  666666666666666666666665553446666666666


Q ss_pred             cccCCccCCcc---cCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          137 YNMFHGKIPST---LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       137 ~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      +|.+++..+..   +.++++|++|++++|.+.+..+  +..+++|++|++++|.+.+.+|. ++++++|++|++++|.++
T Consensus       160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred             CCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence            66666555544   5556666666666665554433  25667777777777777766665 777777777777777777


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      +.+|..+..+++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..+
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  314 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF  314 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence            777777777777777777777776655543  566677777777766666666655334677777777777766666667


Q ss_pred             cCCCCCCeeecccccccccCCcc-ccCCCcCCEEeCcCCcccccCCcCccCCC-CCcEEEccCCcCceecCC
Q 011044          294 GNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQLHNNSLSGSLPS  363 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~  363 (495)
                      ..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+.+|.
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~  386 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP  386 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred             hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence            77777777777777766655544 66666677777776666666666655554 555555555555554444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.5e-45  Score=382.51  Aligned_cols=365  Identities=21%  Similarity=0.311  Sum_probs=296.5

Q ss_pred             ChHHHHHHHHHHhhCCCCCCccccC-------CCCCCCCCCcc---ceeeeCCCCCCeEEEEcCCCCCcccCchhccCCC
Q 011044           10 ITTDQQALLVLKAHVTDDPTNFLAK-------NWNTSSSFCYW---TGVTCDVRSHRVAALNISGLNLTGTIPSELANLS   79 (495)
Q Consensus        10 ~~~~~~~ll~~~~~~~~~~~~~l~~-------~w~~~~~~c~w---~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~   79 (495)
                      ...|+.||.+++.++. .+.+....       +|+.+.++|.|   .||+|+.. ++|+.|+|++++++|.+|+.+++++
T Consensus        28 ~~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           28 YIKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHTT-GGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             HHHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            4469999999999984 44333222       79988899999   99999864 7999999999999999999999999


Q ss_pred             CCCEEeCcCCc---------------------------------------------------------------------
Q 011044           80 SLQALDLSFNW---------------------------------------------------------------------   90 (495)
Q Consensus        80 ~L~~L~L~~n~---------------------------------------------------------------------   90 (495)
                      +|++|+|++|.                                                                     
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            99999999884                                                                     


Q ss_pred             ---------CCccCCccccCCCCCcEEEccCCccccc-----------------CChhHh--hcCCCCCEEEcccccCCc
Q 011044           91 ---------FYGSIPSSIFNMSSLLSIYFNNNTLFGE-----------------LPPNFC--NQMSNLESLFLKYNMFHG  142 (495)
Q Consensus        91 ---------l~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~p~~~~--~~l~~L~~L~l~~n~l~~  142 (495)
                               +++ +|..++++++|++|++++|.+.+.                 +|..+.  . +++|++|++++|.+.+
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCc
Confidence                     334 788899999999999999999885                 888877  6 9999999999999999


Q ss_pred             cCCcccCCCCCCCEEEcccCc-Ccc-ccCccccCC------CCCCEEEccCCCCCCCCCh--hhhCcccccEEEecCCcC
Q 011044          143 KIPSTLSSCKQLRELSLSSNY-FSG-TIPKEIGNL------TKLTRLNLRQNKLQGEIPE--ELGNLAELEMLWLQNNSL  212 (495)
Q Consensus       143 ~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l  212 (495)
                      .+|..++++++|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .++++++|++|++++|.+
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence            999999999999999999998 998 889888876      89999999999999 8888  899999999999999999


Q ss_pred             CCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccc-cceeeccCcccccccchhhhh-CCccccccccccceeeeccc
Q 011044          213 TGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS-LQKLYLSDNQLSGELPANIGN-NLPSLQTLSLYVNDFSGAIP  290 (495)
Q Consensus       213 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~  290 (495)
                      +|.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+.. .+++|+.|++++|.+.+..|
T Consensus       343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence            98888 8888899999999999888 66777888888 999999999888 67765431 13478888888888877777


Q ss_pred             cccc-------CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCc-cCC-------CCCcEEEccCC
Q 011044          291 KEIG-------NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPI-FNL-------STLISLQLHNN  355 (495)
Q Consensus       291 ~~l~-------~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l-------~~L~~L~l~~n  355 (495)
                      ..+.       .+++|+.|++++|.+++..+..+..+++|++|++++|++. .+|..+ ...       ++|+.|++++|
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence            7666       6677888888888777433333455777777777777777 344332 222       27777777777


Q ss_pred             cCceecCCCCC-CCCCChhhhhhhhcCCCc
Q 011044          356 SLSGSLPSSAD-VPLPNLEELFLWEYGREG  384 (495)
Q Consensus       356 ~l~~~~~~~~~-~~l~~L~~L~l~~~~~~~  384 (495)
                      ++. .+|.... ..+++|+.|++.+|...+
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence            776 5665543 356777777777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.3e-43  Score=375.76  Aligned_cols=355  Identities=22%  Similarity=0.335  Sum_probs=256.3

Q ss_pred             CCCChHHHHHHHHHHhhCCCCCCccccCCCCCCC-----CC--Ccc------------ceeeeCCCCCCeEEEEcCCCCC
Q 011044            7 TTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSS-----SF--CYW------------TGVTCDVRSHRVAALNISGLNL   67 (495)
Q Consensus         7 ~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~L~L~~~~l   67 (495)
                      ++...+|+.||++||+++ ++|      +|+.+.     ++  |.|            .||+|+. ..+|+.|+|+++++
T Consensus       264 ~~~~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L  335 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA  335 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred             cccchHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence            344567999999999999 566      565443     44  999            9999986 47999999999999


Q ss_pred             cccCchhccCCCCCCEEeC-cCCcCCcc----------------------------------------------------
Q 011044           68 TGTIPSELANLSSLQALDL-SFNWFYGS----------------------------------------------------   94 (495)
Q Consensus        68 ~~~~~~~l~~l~~L~~L~L-~~n~l~~~----------------------------------------------------   94 (495)
                      .|.+|+.|++|++|++|+| ++|.+.|.                                                    
T Consensus       336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~  415 (876)
T 4ecn_A          336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK  415 (876)
T ss_dssp             EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred             CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence            9999999999999999999 77754433                                                    


Q ss_pred             ------------------------CCccccCCCCCcEEEccCCcccc-----------------cCChhHh-hcCCCCCE
Q 011044           95 ------------------------IPSSIFNMSSLLSIYFNNNTLFG-----------------ELPPNFC-NQMSNLES  132 (495)
Q Consensus        95 ------------------------~~~~l~~l~~L~~L~l~~n~~~~-----------------~~p~~~~-~~l~~L~~  132 (495)
                                              +|..+.++++|++|++++|.+++                 .+|..+. ..+++|++
T Consensus       416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~  495 (876)
T 4ecn_A          416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD  495 (876)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence                                    78889999999999999999988                 3888874 34999999


Q ss_pred             EEcccccCCccCCcccCCCCCCCEEEcccCc-Ccc-ccCccccCCC-------CCCEEEccCCCCCCCCCh--hhhCccc
Q 011044          133 LFLKYNMFHGKIPSTLSSCKQLRELSLSSNY-FSG-TIPKEIGNLT-------KLTRLNLRQNKLQGEIPE--ELGNLAE  201 (495)
Q Consensus       133 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~  201 (495)
                      |++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.++       +|++|++++|.++ .+|.  .++++++
T Consensus       496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~  574 (876)
T 4ecn_A          496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK  574 (876)
T ss_dssp             EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred             EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence            9999999999999999999999999999998 887 7777665554       8888888888887 7777  7888888


Q ss_pred             ccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccc-cceeeccCcccccccchhhhh----------
Q 011044          202 LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS-LQKLYLSDNQLSGELPANIGN----------  270 (495)
Q Consensus       202 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~----------  270 (495)
                      |+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..          
T Consensus       575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred             CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence            888888888777 666 6677777777777777766 55555666666 666666666554 33322110          


Q ss_pred             --------------------CCccccccccccceeeeccccc-ccCCCCCCeeecccccccccCCccccC--------CC
Q 011044          271 --------------------NLPSLQTLSLYVNDFSGAIPKE-IGNLTKLTDLYLDQNKLQGKIPHEIGN--------LR  321 (495)
Q Consensus       271 --------------------~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~--------l~  321 (495)
                                          ..++|+.|++++|.++ .+|.. +..+++|+.|+|++|++. .+|..+..        ++
T Consensus       651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~  728 (876)
T 4ecn_A          651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY  728 (876)
T ss_dssp             CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred             CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence                                1124556666666555 33333 335666677777766666 34433221        22


Q ss_pred             cCCEEeCcCCcccccCCcCcc--CCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhh
Q 011044          322 KLEWLMLSHNKLVGVVPAPIF--NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWE  379 (495)
Q Consensus       322 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  379 (495)
                      +|+.|+|++|++. .+|..+.  .+++|+.|++++|++.+ +|.... .+++|+.|++..
T Consensus       729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~  785 (876)
T 4ecn_A          729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRH  785 (876)
T ss_dssp             GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCC
T ss_pred             CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCC
Confidence            6666666666666 4555554  66666666666666664 454433 456666666644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.9e-43  Score=336.04  Aligned_cols=294  Identities=32%  Similarity=0.540  Sum_probs=217.7

Q ss_pred             CCCChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCCc--cceeeeCCCC--CCeEEEEcCCCCCcc--cCchhccCCCC
Q 011044            7 TTSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCY--WTGVTCDVRS--HRVAALNISGLNLTG--TIPSELANLSS   80 (495)
Q Consensus         7 ~~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~L~~~~l~~--~~~~~l~~l~~   80 (495)
                      +.|.++|++||++||+++ .+|. .+. +|..+.++|.  |.||+|+...  .+|++|+|+++.+++  .+|..++++++
T Consensus         1 ~~c~~~~~~aL~~~k~~~-~~~~-~l~-~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDL-GNPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHT-TCCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCCHHHHHHHHHHHHhc-CCcc-ccc-CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            358899999999999999 5776 666 9988888998  9999998643  689999999999999  89999999999


Q ss_pred             CCEEeCcC-CcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEc
Q 011044           81 LQALDLSF-NWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL  159 (495)
Q Consensus        81 L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  159 (495)
                      |++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            99999995 8898889988999999999999999888788877766 888888888888888777888888888888888


Q ss_pred             ccCcCccccCccccCCC-CCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          160 SSNYFSGTIPKEIGNLT-KLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       160 ~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      ++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            88888777777777776 778888877777777777777665 7777777777766666666666666666666666655


Q ss_pred             CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccc
Q 011044          239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNK  308 (495)
Q Consensus       239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  308 (495)
                      ..+. +..+++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            4443 44455555555555555544444433 3444444444444444444433 344444444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-41  Score=365.90  Aligned_cols=336  Identities=39%  Similarity=0.589  Sum_probs=242.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCcc-ccCCCCCcEEEccCCcccccCChhHhhc-------
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSS-IFNMSSLLSIYFNNNTLFGELPPNFCNQ-------  126 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~~~~~~-------  126 (495)
                      +++++|+|++|.+++.+|..++++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+...       
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L  373 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL  373 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence            46677777777776666666777777777777777776666654 6666777777777776666666555441       


Q ss_pred             -------------------CCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCC
Q 011044          127 -------------------MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK  187 (495)
Q Consensus       127 -------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  187 (495)
                                         +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus       374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~  453 (768)
T 3rgz_A          374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM  453 (768)
T ss_dssp             ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence                               2344444455555555556666666777777777777776677777777777777777777


Q ss_pred             CCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchh
Q 011044          188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPAN  267 (495)
Q Consensus       188 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  267 (495)
                      +.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|+.|++++|.+++.+|..
T Consensus       454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  533 (768)
T 3rgz_A          454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE  533 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777766


Q ss_pred             hhhCCccccccccccceeeeccccc-------------------------------------------------------
Q 011044          268 IGNNLPSLQTLSLYVNDFSGAIPKE-------------------------------------------------------  292 (495)
Q Consensus       268 ~~~~l~~L~~L~L~~n~l~~~~~~~-------------------------------------------------------  292 (495)
                      +. .+++|+.|++++|.+++.+|..                                                       
T Consensus       534 l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          534 LG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             Hc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            65 6777777777777776555533                                                       


Q ss_pred             ---------------ccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcC
Q 011044          293 ---------------IGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL  357 (495)
Q Consensus       293 ---------------l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  357 (495)
                                     +..+++|+.|++++|++++.+|..++.++.|+.|++++|++++.+|..++.+++|+.|++++|++
T Consensus       613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence                           23346677888888888888888888888888888888888888888888888888888888888


Q ss_pred             ceecCCCCCCCCCChhhhhhhhcCCCccccCCCcc
Q 011044          358 SGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDI  392 (495)
Q Consensus       358 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~dv  392 (495)
                      +|.+|.... .++.|++|+++.|...|.++..+..
T Consensus       693 ~g~ip~~l~-~l~~L~~L~ls~N~l~g~iP~~~~~  726 (768)
T 3rgz_A          693 DGRIPQAMS-ALTMLTEIDLSNNNLSGPIPEMGQF  726 (768)
T ss_dssp             EECCCGGGG-GCCCCSEEECCSSEEEEECCSSSSG
T ss_pred             cCcCChHHh-CCCCCCEEECcCCcccccCCCchhh
Confidence            888877654 5778888888888877777765433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.5e-39  Score=326.13  Aligned_cols=328  Identities=24%  Similarity=0.257  Sum_probs=248.9

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccC-CccccCCCCCcEEEccCCcccccCChhHhhcCCCCCE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES  132 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~  132 (495)
                      ++++++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.. +++|++
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~  107 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV  107 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence            368999999999999988999999999999999999997665 567999999999999999998777777766 999999


Q ss_pred             EEcccccCCccCCcc--cCCCCCCCEEEcccCcCccccCcc-ccCCCCCCEEEccCCCCCCCCChhhhCc--ccccEEEe
Q 011044          133 LFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIPKE-IGNLTKLTRLNLRQNKLQGEIPEELGNL--AELEMLWL  207 (495)
Q Consensus       133 L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l  207 (495)
                      |++++|.+++..+..  +.++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+  .+|+.|++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            999999998755554  899999999999999999887776 8899999999999999998888777766  56677777


Q ss_pred             cCCcCCCcCchh--------hhcCCCCceeeCCCCcCCCCCCccccc---------------------------------
Q 011044          208 QNNSLTGTIPSS--------IFSLSSLLNLDLSLNNFTGIIPSSIGN---------------------------------  246 (495)
Q Consensus       208 ~~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~l~~---------------------------------  246 (495)
                      ++|.+.+..+..        +..+++|++|++++|.+.+..+..+..                                 
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence            777666433322        224566777777777665433332221                                 


Q ss_pred             ------ccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCC
Q 011044          247 ------LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL  320 (495)
Q Consensus       247 ------~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l  320 (495)
                            .++|+.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             ccccccccCceEEEecCccccccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence                  24677777777777655555444 66777777777777776666677777777777777777766666667777


Q ss_pred             CcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044          321 RKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG  384 (495)
Q Consensus       321 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  384 (495)
                      ++|++|++++|++.+..|..+..+++|++|++++|++. .+|...+..+++|+.|++.+|...+
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCccc
Confidence            77777777777777766777777777777777777776 3455444566777777777666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-36  Score=319.14  Aligned_cols=302  Identities=24%  Similarity=0.237  Sum_probs=188.2

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      ++.+++|+|++|.+++..|..|+++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEe
Confidence            467899999999999888888999999999999999988888888999999999999999887666666655 8888888


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCccccc--EEEecCCc
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE--MLWLQNNS  211 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~  211 (495)
                      ++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+  .|++++|.
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            8888888866567788888888888888888764333444577777777777777655555566666555  55555554


Q ss_pred             CCCcC---------------------------------------------------------------------------
Q 011044          212 LTGTI---------------------------------------------------------------------------  216 (495)
Q Consensus       212 l~~~~---------------------------------------------------------------------------  216 (495)
                      +++..                                                                           
T Consensus       191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence            43222                                                                           


Q ss_pred             chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccc-cccC
Q 011044          217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK-EIGN  295 (495)
Q Consensus       217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~  295 (495)
                      +..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+.++. .+..
T Consensus       271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhc
Confidence            222444555666666666555 3444455555566666665555533333332 444455555544444332222 2444


Q ss_pred             CCCCCeeecccccccccC--CccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          296 LTKLTDLYLDQNKLQGKI--PHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       296 l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      +++|++|++++|.+.+..  +..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            444444444444444322  333444444444444444444444444444444444444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-37  Score=326.62  Aligned_cols=323  Identities=23%  Similarity=0.338  Sum_probs=283.8

Q ss_pred             CCCeEEEEcCCCCCccc-----------------Cchhcc--CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044           54 SHRVAALNISGLNLTGT-----------------IPSELA--NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT  114 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  114 (495)
                      .+++++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            46899999999999996                 899999  99999999999999999999999999999999999998


Q ss_pred             -ccc-cCChhHhhcC------CCCCEEEcccccCCccCCc--ccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044          115 -LFG-ELPPNFCNQM------SNLESLFLKYNMFHGKIPS--TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR  184 (495)
Q Consensus       115 -~~~-~~p~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  184 (495)
                       +++ .+|..+.. +      ++|++|++++|.++ .+|.  .++++++|++|++++|.++|.+| .++.+++|++|+++
T Consensus       285 ~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          285 GISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence             888 89988876 5      99999999999999 8888  89999999999999999998999 89999999999999


Q ss_pred             CCCCCCCCChhhhCccc-ccEEEecCCcCCCcCchhhhcCC--CCceeeCCCCcCCCCCCcccc-------cccccceee
Q 011044          185 QNKLQGEIPEELGNLAE-LEMLWLQNNSLTGTIPSSIFSLS--SLLNLDLSLNNFTGIIPSSIG-------NLSSLQKLY  254 (495)
Q Consensus       185 ~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~~~~L~~L~  254 (495)
                      +|.++ .+|..+.++++ |++|++++|.++ .+|..+..++  +|++|++++|.+.+..|..+.       .+++|+.|+
T Consensus       362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~  439 (636)
T 4eco_A          362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN  439 (636)
T ss_dssp             SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred             CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence            99998 88888999999 999999999998 7788777655  899999999999998888887       778999999


Q ss_pred             ccCcccccccchhhhhCCccccccccccceeeeccccc-ccCC-------CCCCeeecccccccccCCcccc--CCCcCC
Q 011044          255 LSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE-IGNL-------TKLTDLYLDQNKLQGKIPHEIG--NLRKLE  324 (495)
Q Consensus       255 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l-------~~L~~L~L~~n~i~~~~~~~l~--~l~~L~  324 (495)
                      +++|.++ .+|..++..+++|++|++++|.++ .+|.. +...       ++|+.|++++|+++ .+|..+.  .+++|+
T Consensus       440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~  516 (636)
T 4eco_A          440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLV  516 (636)
T ss_dssp             CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCC
T ss_pred             CcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcC
Confidence            9999998 788777767899999999999988 44443 3322       28999999999998 6777776  899999


Q ss_pred             EEeCcCCcccccCCcCccCCCCCcEEEc------cCCcCceecCCCCCCCCCChhhhhhhhcCCCcccc
Q 011044          325 WLMLSHNKLVGVVPAPIFNLSTLISLQL------HNNSLSGSLPSSADVPLPNLEELFLWEYGREGRVS  387 (495)
Q Consensus       325 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  387 (495)
                      +|++++|++.+ +|..+..+++|+.|++      ++|++.+.+|.... .+++|+.|++.+|.. +.++
T Consensus       517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCC
T ss_pred             EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCCcC-CccC
Confidence            99999999987 7888889999999999      45777778877655 588999999988887 4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=309.02  Aligned_cols=313  Identities=21%  Similarity=0.215  Sum_probs=281.2

Q ss_pred             cceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc
Q 011044           45 WTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL  115 (495)
Q Consensus        45 w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  115 (495)
                      |..+.|...         +.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            456666531         46899999999999998888999999999999999999988899999999999999999998


Q ss_pred             cccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChh
Q 011044          116 FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEE  195 (495)
Q Consensus       116 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  195 (495)
                      . .+|...+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..
T Consensus        93 ~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             C-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            5 566665555999999999999999888889999999999999999999888889999999999999999999777778


Q ss_pred             hhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccc
Q 011044          196 LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL  275 (495)
Q Consensus       196 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  275 (495)
                      +.++++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.++ .++...+..+++|
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L  250 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL  250 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcccc
Confidence            999999999999999999877788999999999999999887777766666679999999999998 6675555589999


Q ss_pred             cccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCC
Q 011044          276 QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNN  355 (495)
Q Consensus       276 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  355 (495)
                      +.|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            99999999999888888999999999999999999888899999999999999999999877778889999999999999


Q ss_pred             cCce
Q 011044          356 SLSG  359 (495)
Q Consensus       356 ~l~~  359 (495)
                      ++..
T Consensus       331 ~l~c  334 (477)
T 2id5_A          331 PLAC  334 (477)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            9863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.5e-36  Score=315.15  Aligned_cols=327  Identities=21%  Similarity=0.174  Sum_probs=212.4

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      ++++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L  109 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENL  109 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEE
Confidence            467888888888888777777888888888888888888777777888888888888888876665666655 8888888


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhhhCcc------------
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA------------  200 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~------------  200 (495)
                      ++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.++            
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            888888776665677788888888888887765 4577777788888887777776644333222111            


Q ss_pred             --------------------------------------------------------------------------------
Q 011044          201 --------------------------------------------------------------------------------  200 (495)
Q Consensus       201 --------------------------------------------------------------------------------  200 (495)
                                                                                                      
T Consensus       190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  269 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT  269 (606)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred             CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence                                                                                            


Q ss_pred             --------------------------------------cccEEEecCCcC------------------------------
Q 011044          201 --------------------------------------ELEMLWLQNNSL------------------------------  212 (495)
Q Consensus       201 --------------------------------------~L~~L~l~~n~l------------------------------  212 (495)
                                                            +|++|++++|.+                              
T Consensus       270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l  349 (606)
T 3vq2_A          270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL  349 (606)
T ss_dssp             CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred             ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccC
Confidence                                                  122222222221                              


Q ss_pred             -------------CCc--CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccc
Q 011044          213 -------------TGT--IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT  277 (495)
Q Consensus       213 -------------~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  277 (495)
                                   ++.  .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+...+..+++|++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence                         111  12233333334444444443332 22345555566666666666554444222335666777


Q ss_pred             cccccceeeecccccccCCCCCCeeecccccccc-cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCc
Q 011044          278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG-KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNS  356 (495)
Q Consensus       278 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  356 (495)
                      |++++|.+.+..+..+..+++|+.|++++|.+.+ .+|..++.+++|++|++++|++.+..|..+..+++|+.|++++|+
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            7777777666666667777777777777777765 356667777777777777777777667677777777777777777


Q ss_pred             CceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          357 LSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       357 l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      +.+..|.... .+++|+.|++.+|...
T Consensus       509 l~~~~~~~~~-~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          509 LLFLDSSHYN-QLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CSCEEGGGTT-TCTTCCEEECTTSCCC
T ss_pred             CCCcCHHHcc-CCCcCCEEECCCCcCc
Confidence            7755554433 4677777777777655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=304.87  Aligned_cols=323  Identities=22%  Similarity=0.181  Sum_probs=288.6

Q ss_pred             eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044           57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK  136 (495)
Q Consensus        57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~  136 (495)
                      -+.++.++++++ .+|..+  .+++++|+|++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence            357888898887 455544  368999999999999888899999999999999999997776777665 9999999999


Q ss_pred             cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcC
Q 011044          137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI  216 (495)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  216 (495)
                      +|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            99999666667899999999999999999888889999999999999999999888889999999999999999999777


Q ss_pred             chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCC
Q 011044          217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNL  296 (495)
Q Consensus       217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  296 (495)
                      +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++...+ ...+|++|++++|.+++..+..+..+
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCc
Confidence            77899999999999999999988888899999999999999988778877766 45699999999999986555678999


Q ss_pred             CCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhh
Q 011044          297 TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELF  376 (495)
Q Consensus       297 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  376 (495)
                      ++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI  326 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEE
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEE
Confidence            99999999999999888888999999999999999999999999999999999999999998 56666666789999999


Q ss_pred             hhhcCCCcc
Q 011044          377 LWEYGREGR  385 (495)
Q Consensus       377 l~~~~~~~~  385 (495)
                      +.+|...+.
T Consensus       327 l~~N~l~c~  335 (477)
T 2id5_A          327 LDSNPLACD  335 (477)
T ss_dssp             CCSSCEECS
T ss_pred             ccCCCccCc
Confidence            988876543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=306.95  Aligned_cols=315  Identities=23%  Similarity=0.258  Sum_probs=214.5

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|..   .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEe
Confidence            68999999999999888888999999999999999999888888999999999999999986 67666   489999999


Q ss_pred             cccccCCc-cCCcccCCCCCCCEEEcccCcCccccCccccCCCCC--CEEEccCCCC--CCCCChhhhCcc---------
Q 011044          135 LKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL--TRLNLRQNKL--QGEIPEELGNLA---------  200 (495)
Q Consensus       135 l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~---------  200 (495)
                      +++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..+.         
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            99999886 467889999999999999998875   345666666  8888888777  445554444322         


Q ss_pred             --------------------------------------------------------------------------cccEEE
Q 011044          201 --------------------------------------------------------------------------ELEMLW  206 (495)
Q Consensus       201 --------------------------------------------------------------------------~L~~L~  206 (495)
                                                                                                +|++|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                                                                                      456666


Q ss_pred             ecCCcCCCcCchhh-----hcCCCCceeeCCCCcC--------------------------CCCCCcccccccccceeec
Q 011044          207 LQNNSLTGTIPSSI-----FSLSSLLNLDLSLNNF--------------------------TGIIPSSIGNLSSLQKLYL  255 (495)
Q Consensus       207 l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l--------------------------~~~~~~~l~~~~~L~~L~l  255 (495)
                      +++|.+++.+|..+     ..+++|+.+++++|.+                          ....  ....+++|++|++
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L  331 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDF  331 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEe
Confidence            66666665555554     3333333333333332                          1110  0145566666677


Q ss_pred             cCcccccccchhhhhCCccccccccccceeee--cccccccCCCCCCeeecccccccccCCc-cccCCCcCCEEeCcCCc
Q 011044          256 SDNQLSGELPANIGNNLPSLQTLSLYVNDFSG--AIPKEIGNLTKLTDLYLDQNKLQGKIPH-EIGNLRKLEWLMLSHNK  332 (495)
Q Consensus       256 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~  332 (495)
                      ++|.+++..|..+. .+++|++|++++|.+++  .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|+
T Consensus       332 s~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          332 SNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             ECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            66666655555544 56666677776666664  3445566666677777776666653443 35566666666666666


Q ss_pred             ccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          333 LVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       333 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      +.+..|..+.  ++|+.|++++|++. .+|.... .+++|+.|++.+|...
T Consensus       411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK  457 (520)
T ss_dssp             CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC
T ss_pred             CCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCC
Confidence            6655554433  56666666666666 5555444 5666666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-35  Score=309.92  Aligned_cols=327  Identities=23%  Similarity=0.214  Sum_probs=220.9

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|+|++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..+.. +++|++|
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~-l~~L~~L  134 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESL  134 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT-CTTCCEE
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhcc-CCcccEE
Confidence            367888888888888888888888888888888888888777888888888888888888886543444433 7888888


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCC--EEEccCCCCC----------------------
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT--RLNLRQNKLQ----------------------  189 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~----------------------  189 (495)
                      ++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+  +|++++|.+.                      
T Consensus       135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~  214 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN  214 (606)
T ss_dssp             ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred             ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence            8888887764334444577788888877777766565566666655  5555555443                      


Q ss_pred             -----------------------------------------------------CCCChhhhCcccccEEEecCCcCCCcC
Q 011044          190 -----------------------------------------------------GEIPEELGNLAELEMLWLQNNSLTGTI  216 (495)
Q Consensus       190 -----------------------------------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~  216 (495)
                                                                           +..+..|..+++|++|++++|.++ .+
T Consensus       215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l  293 (606)
T 3t6q_A          215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL  293 (606)
T ss_dssp             HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred             HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence                                                                 222333666777888888888777 66


Q ss_pred             chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecc--ccccc
Q 011044          217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAI--PKEIG  294 (495)
Q Consensus       217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~  294 (495)
                      |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++......+++|++|++++|.+.+..  +..+.
T Consensus       294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  373 (606)
T 3t6q_A          294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR  373 (606)
T ss_dssp             CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred             ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence            7777778888888888888777666667777777777777777665555543336667777777776665443  45566


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCc-CccCCCCCcEEEccCCcCceecCCCCCCCCCChh
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPA-PIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLE  373 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  373 (495)
                      .+++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..|.. ...+++|+
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~  452 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQ  452 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCC
T ss_pred             cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH-HhCCCCCC
Confidence            666666666666666655555666666666666666666554433 2555666666666666665433332 22455555


Q ss_pred             hhhhhhcCCC
Q 011044          374 ELFLWEYGRE  383 (495)
Q Consensus       374 ~L~l~~~~~~  383 (495)
                      +|++.+|...
T Consensus       453 ~L~L~~n~l~  462 (606)
T 3t6q_A          453 HLNLQGNHFP  462 (606)
T ss_dssp             EEECTTCBCG
T ss_pred             EEECCCCCCC
Confidence            5555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=307.94  Aligned_cols=326  Identities=22%  Similarity=0.199  Sum_probs=215.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-cccccccc
Confidence            45666666666666655556666666666666666666555556666666666666666654433333333 66666666


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhh-----------------
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEEL-----------------  196 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----------------  196 (495)
                      +++|.++...+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+                 
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            66666554333345566666666666665554 245556666666666665555443222222                 


Q ss_pred             --------------------------------------------------------------------------------
Q 011044          197 --------------------------------------------------------------------------------  196 (495)
Q Consensus       197 --------------------------------------------------------------------------------  196 (495)
                                                                                                      
T Consensus       187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence                                                                                            


Q ss_pred             ------------hCcccccEEEecCCcCCCcCchhh------------------------------------------hc
Q 011044          197 ------------GNLAELEMLWLQNNSLTGTIPSSI------------------------------------------FS  222 (495)
Q Consensus       197 ------------~~l~~L~~L~l~~n~l~~~~~~~l------------------------------------------~~  222 (495)
                                  ..+++|+.|++++|.++ .+|..+                                          ..
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD  345 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence                        22333444444444333 122111                                          35


Q ss_pred             CCCCceeeCCCCcCCCCC--CcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccc-ccccCCCCC
Q 011044          223 LSSLLNLDLSLNNFTGII--PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP-KEIGNLTKL  299 (495)
Q Consensus       223 l~~L~~L~Ls~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L  299 (495)
                      +++|++|++++|.+++..  +..+..+++|+.|++++|.+.+ ++..+. .+++|+.|++++|.+.+..+ ..+..+++|
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            677888888888877553  5667788899999999998874 443343 78888999999888876655 467888888


Q ss_pred             CeeecccccccccCCccccCCCcCCEEeCcCCccc-ccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhh
Q 011044          300 TDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLV-GVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLW  378 (495)
Q Consensus       300 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  378 (495)
                      +.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++.+..|... ..+++|+.|++.
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~  502 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMA  502 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh-hcccCCCEEeCC
Confidence            99999988888878888888888999999888887 5677888888888999999888886656544 357888888888


Q ss_pred             hcCCCcc
Q 011044          379 EYGREGR  385 (495)
Q Consensus       379 ~~~~~~~  385 (495)
                      +|...+.
T Consensus       503 ~n~l~~~  509 (570)
T 2z63_A          503 SNQLKSV  509 (570)
T ss_dssp             SSCCSCC
T ss_pred             CCcCCCC
Confidence            8876653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.4e-35  Score=306.04  Aligned_cols=318  Identities=24%  Similarity=0.258  Sum_probs=205.0

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      ++++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|..   .+++|++|
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            468999999999999888889999999999999999999888999999999999999999986 67766   49999999


Q ss_pred             EcccccCCc-cCCcccCCCCCCCEEEcccCcCccccCccccCCCCC--CEEEccCCCC--CCCCChhhhCcc--------
Q 011044          134 FLKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL--TRLNLRQNKL--QGEIPEELGNLA--------  200 (495)
Q Consensus       134 ~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--------  200 (495)
                      ++++|.+++ ..|..++++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..+.        
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            999999986 3468899999999999999998753   34455555  9999998888  555555444322        


Q ss_pred             -------------------------------------------------------------------------cccEEEe
Q 011044          201 -------------------------------------------------------------------------ELEMLWL  207 (495)
Q Consensus       201 -------------------------------------------------------------------------~L~~L~l  207 (495)
                                                                                               +|++|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                                                                                     5666666


Q ss_pred             cCCcCCCcCchhh-----------------------------------------------------hcCCCCceeeCCCC
Q 011044          208 QNNSLTGTIPSSI-----------------------------------------------------FSLSSLLNLDLSLN  234 (495)
Q Consensus       208 ~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~Ls~n  234 (495)
                      ++|.+++.+|..+                                                     ..+++|++|++++|
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n  363 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN  363 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence            6666665555543                                                     33445555555555


Q ss_pred             cCCCCCCcccccccccceeeccCcccccc--cchhhhhCCccccccccccceeeecccc-cccCCCCCCeeecccccccc
Q 011044          235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGE--LPANIGNNLPSLQTLSLYVNDFSGAIPK-EIGNLTKLTDLYLDQNKLQG  311 (495)
Q Consensus       235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~  311 (495)
                      .+++..|..++.+++|+.|++++|.+++.  +|..+. .+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus       364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            55554455555555555555555555421  111222 445555555555555442322 24445555555555555544


Q ss_pred             cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          312 KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       312 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      .++..+.  ++|++|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+++|+.+++.+|...
T Consensus       443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence            3333222  45555555555554 34444445555555555555555 344433334555555555555433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-35  Score=310.99  Aligned_cols=207  Identities=23%  Similarity=0.190  Sum_probs=179.0

Q ss_pred             CCCCCEEEccCCCCCCC--CChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCC-cccccccccc
Q 011044          175 LTKLTRLNLRQNKLQGE--IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIP-SSIGNLSSLQ  251 (495)
Q Consensus       175 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~  251 (495)
                      +++|++|++++|.+++.  ++..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            34555555666655543  36778889999999999999884 66889999999999999999998877 6789999999


Q ss_pred             eeeccCcccccccchhhhhCCccccccccccceeee-cccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcC
Q 011044          252 KLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG-AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH  330 (495)
Q Consensus       252 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  330 (495)
                      .|++++|.+.+..|..+. .+++|++|++++|.+.+ .+|..+..+++|+.|++++|++++..|..+..+++|++|++++
T Consensus       428 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             EEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            999999999977777665 89999999999999987 4788899999999999999999988888999999999999999


Q ss_pred             CcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCC-ChhhhhhhhcCCCcc
Q 011044          331 NKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP-NLEELFLWEYGREGR  385 (495)
Q Consensus       331 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~  385 (495)
                      |++.+..|..+..+++|+.|++++|++. .+|.. ...++ +|+.+++.+|+..+.
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCCS
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCcccC
Confidence            9999988999999999999999999998 67766 44566 599999999887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-35  Score=301.36  Aligned_cols=308  Identities=22%  Similarity=0.243  Sum_probs=259.8

Q ss_pred             CCCeEEEEcCCCCCcccC-chhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChh-HhhcCCCCC
Q 011044           54 SHRVAALNISGLNLTGTI-PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPN-FCNQMSNLE  131 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~l~~L~  131 (495)
                      .+++++|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..+.++++|++|++++|.+.+.+|.. .+..+++|+
T Consensus        53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            468999999999998665 467999999999999999999888999999999999999999997755543 234499999


Q ss_pred             EEEcccccCCccCCcc-cCCCCCCCEEEcccCcCccccCccccCC--CCCCEEEccCCCCCCCCChh--------hhCcc
Q 011044          132 SLFLKYNMFHGKIPST-LSSCKQLRELSLSSNYFSGTIPKEIGNL--TKLTRLNLRQNKLQGEIPEE--------LGNLA  200 (495)
Q Consensus       132 ~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~  200 (495)
                      +|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+..        +..++
T Consensus       133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  212 (455)
T 3v47_A          133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT  212 (455)
T ss_dssp             EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred             EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence            9999999999877766 8899999999999999998888777665  56777777777766443322        22456


Q ss_pred             cccEEEecCCcCCCcCchhhhc---------------------------------------CCCCceeeCCCCcCCCCCC
Q 011044          201 ELEMLWLQNNSLTGTIPSSIFS---------------------------------------LSSLLNLDLSLNNFTGIIP  241 (495)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~l~~---------------------------------------l~~L~~L~Ls~n~l~~~~~  241 (495)
                      +|++|++++|.+++..+..+..                                       .++|++|++++|.+.+..+
T Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  292 (455)
T 3v47_A          213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK  292 (455)
T ss_dssp             EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred             eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence            6777777777666544433321                                       2689999999999999889


Q ss_pred             cccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCC
Q 011044          242 SSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLR  321 (495)
Q Consensus       242 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~  321 (495)
                      ..++.+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..++
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            9999999999999999999966666665 799999999999999988888999999999999999999988889999999


Q ss_pred             cCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecC
Q 011044          322 KLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP  362 (495)
Q Consensus       322 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  362 (495)
                      +|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999998777778999999999999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.6e-36  Score=319.58  Aligned_cols=323  Identities=21%  Similarity=0.292  Sum_probs=270.4

Q ss_pred             CCCeEEEEcCCCCCcc-----------------cCchhcc--CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044           54 SHRVAALNISGLNLTG-----------------TIPSELA--NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT  114 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  114 (495)
                      .++++.|+|++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..+.++++|++|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4689999999999998                 4888888  99999999999999999999999999999999999998


Q ss_pred             -ccc-cCChhHhh------cCCCCCEEEcccccCCccCCc--ccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044          115 -LFG-ELPPNFCN------QMSNLESLFLKYNMFHGKIPS--TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR  184 (495)
Q Consensus       115 -~~~-~~p~~~~~------~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  184 (495)
                       +.+ .+|..+..      .+++|++|++++|.++ .+|.  .++++++|++|++++|.++ .+| .++.+++|++|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence             887 88887765      2349999999999999 8888  8999999999999999999 788 89999999999999


Q ss_pred             CCCCCCCCChhhhCccc-ccEEEecCCcCCCcCchhhhcCCC--CceeeCCCCcCCCCCCcc---cc--cccccceeecc
Q 011044          185 QNKLQGEIPEELGNLAE-LEMLWLQNNSLTGTIPSSIFSLSS--LLNLDLSLNNFTGIIPSS---IG--NLSSLQKLYLS  256 (495)
Q Consensus       185 ~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~~~~L~~L~l~  256 (495)
                      +|.+. .+|..+.++++ |+.|++++|.++ .+|..+..++.  |+.|++++|.+.+.+|..   +.  .+++|+.|+++
T Consensus       604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls  681 (876)
T 4ecn_A          604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS  681 (876)
T ss_dssp             SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred             CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence            99999 88888999999 999999999998 77877776654  999999999998766532   22  33478899999


Q ss_pred             CcccccccchhhhhCCccccccccccceeeecccccccC--------CCCCCeeecccccccccCCcccc--CCCcCCEE
Q 011044          257 DNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN--------LTKLTDLYLDQNKLQGKIPHEIG--NLRKLEWL  326 (495)
Q Consensus       257 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L  326 (495)
                      +|.++ .+|..++..+++|+.|++++|.++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|+.|
T Consensus       682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          682 YNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             SSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred             CCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence            99888 778777767888888888888887 45544332        237888888888888 6777776  88888888


Q ss_pred             eCcCCcccccCCcCccCCCCCcEEEccC------CcCceecCCCCCCCCCChhhhhhhhcCCCcccc
Q 011044          327 MLSHNKLVGVVPAPIFNLSTLISLQLHN------NSLSGSLPSSADVPLPNLEELFLWEYGREGRVS  387 (495)
Q Consensus       327 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  387 (495)
                      +|++|++.+ +|..+..+++|+.|++++      |.+.+.+|.... .+++|+.|++.+|.. +.++
T Consensus       759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             ECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCC
T ss_pred             EeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh-cCCCCCEEECCCCCC-CccC
Confidence            888888886 677788888888888866      667777776554 478888888888877 4444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6e-35  Score=317.78  Aligned_cols=314  Identities=23%  Similarity=0.231  Sum_probs=266.8

Q ss_pred             CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccC-CccccCCCCCcEEEccCCcccccC
Q 011044           41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGEL  119 (495)
Q Consensus        41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~  119 (495)
                      ..|.|+.|.+  .++++++|+|++|.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|++++|.+.+..
T Consensus        12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            3466777776  3689999999999999999999999999999999999666666 788999999999999999998777


Q ss_pred             ChhHhhcCCCCCEEEcccccCCccCCcc--cCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCCCCCChhh
Q 011044          120 PPNFCNQMSNLESLFLKYNMFHGKIPST--LSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQGEIPEEL  196 (495)
Q Consensus       120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l  196 (495)
                      |..+.. +++|++|++++|.+++.++..  ++++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+
T Consensus        90 p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A           90 PDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             TTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred             HhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence            777766 999999999999999866665  8999999999999999987655 579999999999999999998888888


Q ss_pred             hCc--ccccEEEecCCcCCCcCchhhhcCCC------CceeeCCCCcCCCCCCccccc----------------------
Q 011044          197 GNL--AELEMLWLQNNSLTGTIPSSIFSLSS------LLNLDLSLNNFTGIIPSSIGN----------------------  246 (495)
Q Consensus       197 ~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~----------------------  246 (495)
                      ..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+.+..+..+..                      
T Consensus       169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~  248 (844)
T 3j0a_A          169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG  248 (844)
T ss_dssp             HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred             ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence            887  89999999999999887777766665      999999999776654433321                      


Q ss_pred             ----------------ccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccc
Q 011044          247 ----------------LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ  310 (495)
Q Consensus       247 ----------------~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  310 (495)
                                      .++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~  327 (844)
T 3j0a_A          249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG  327 (844)
T ss_dssp             CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred             ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence                            25788888888888755554444 7888999999999888887888888899999999999888


Q ss_pred             ccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          311 GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       311 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      +..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            777888888999999999999888777777888889999999988886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-34  Score=307.76  Aligned_cols=325  Identities=25%  Similarity=0.274  Sum_probs=205.2

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      ++++++|+|++|.+++..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|...+..+++|++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence            467899999999998877778888999999999999888888888888899999999988885 5555434448889999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhh--CcccccEEEecCCc
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELG--NLAELEMLWLQNNS  211 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~  211 (495)
                      ++++|.+++..+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.  .+++|++|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999888876667888888999999998888877777788888888888888888766665554  44677788877777


Q ss_pred             CCCcCchhhhcC---------------------------CC--------------------------CceeeCCCCcCCC
Q 011044          212 LTGTIPSSIFSL---------------------------SS--------------------------LLNLDLSLNNFTG  238 (495)
Q Consensus       212 l~~~~~~~l~~l---------------------------~~--------------------------L~~L~Ls~n~l~~  238 (495)
                      +++..+..+..+                           ++                          |++|++++|.+++
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            765554433322                           22                          5555555555554


Q ss_pred             CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee-----cccc----cccCCCCCCeeecccccc
Q 011044          239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG-----AIPK----EIGNLTKLTDLYLDQNKL  309 (495)
Q Consensus       239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~L~~n~i  309 (495)
                      ..+..++.+++|++|++++|.+.+..+..+. .+++|+.|++++|...+     .+|.    .+..+++|+.|++++|.+
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l  341 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI  341 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence            4444555555555555555555433332222 22233333222221110     0010    233344444555555555


Q ss_pred             cccCCccccCCCcCCEEeC----------------------------cCCcccccCCcCccCCCCCcEEEccCCcCceec
Q 011044          310 QGKIPHEIGNLRKLEWLML----------------------------SHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSL  361 (495)
Q Consensus       310 ~~~~~~~l~~l~~L~~L~l----------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  361 (495)
                      .+..+..|..+++|++|++                            ++|++.+..+..+..+++|+.|++++|.+.+.+
T Consensus       342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  421 (680)
T 1ziw_A          342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL  421 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred             CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence            4444444444444444333                            344444455556666666777777777666655


Q ss_pred             CCCCCCCCCChhhhhhhhc
Q 011044          362 PSSADVPLPNLEELFLWEY  380 (495)
Q Consensus       362 ~~~~~~~l~~L~~L~l~~~  380 (495)
                      |...+..+++|+++++..|
T Consensus       422 ~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          422 TGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             CSGGGTTCTTCCEEECCSC
T ss_pred             CcccccCcccccEEecCCC
Confidence            5444444455555544443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.7e-35  Score=303.76  Aligned_cols=336  Identities=21%  Similarity=0.242  Sum_probs=241.1

Q ss_pred             CCccceeeeCCC-----------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEc
Q 011044           42 FCYWTGVTCDVR-----------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYF  110 (495)
Q Consensus        42 ~c~w~gv~c~~~-----------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  110 (495)
                      .|.|.|+ |+.+           ++++++|+|++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4777776 6431           358999999999999998899999999999999999999888899999999999999


Q ss_pred             cCCcccccCChhHhhcCCCCCEEEcccccCCc-cCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCC
Q 011044          111 NNNTLFGELPPNFCNQMSNLESLFLKYNMFHG-KIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKL  188 (495)
Q Consensus       111 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l  188 (495)
                      ++|.+.+..|..+. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+
T Consensus        82 s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           82 SDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             TTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99999755544454 49999999999999986 457789999999999999998544554 6789999999999999999


Q ss_pred             CCCCChhhhCcccccEEEecCCcCCCcCchh-hhcCCCCceeeCCCCcCCCCC--Ccc-c--------------------
Q 011044          189 QGEIPEELGNLAELEMLWLQNNSLTGTIPSS-IFSLSSLLNLDLSLNNFTGII--PSS-I--------------------  244 (495)
Q Consensus       189 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~--~~~-l--------------------  244 (495)
                      .+..|..++.+++|+.|++++|.+. .++.. +..+++|++|++++|.+++..  +.. .                    
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            9888888888877777777777665 23333 244666777777666665421  000 0                    


Q ss_pred             -------------------------------------------------------------------ccccccceeeccC
Q 011044          245 -------------------------------------------------------------------GNLSSLQKLYLSD  257 (495)
Q Consensus       245 -------------------------------------------------------------------~~~~~L~~L~l~~  257 (495)
                                                                                         ....+|+.|++++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence                                                                               0012344555555


Q ss_pred             cccccccchhhhhCCccccccccccceeeeccc---ccccCCCCCCeeecccccccccCC--ccccCCCcCCEEeCcCCc
Q 011044          258 NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP---KEIGNLTKLTDLYLDQNKLQGKIP--HEIGNLRKLEWLMLSHNK  332 (495)
Q Consensus       258 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~i~~~~~--~~l~~l~~L~~L~l~~n~  332 (495)
                      |.+. .+|..++..+++|++|++++|.+.+.++   ..+..+++|+.|++++|++++..+  ..+..+++|++|++++|+
T Consensus       320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  398 (549)
T 2z81_A          320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT  398 (549)
T ss_dssp             SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence            5544 4555554457777777777777766543   235667777777777777764321  346677777777777777


Q ss_pred             ccccCCcCccCCCCCcEEEccCCcCceecCCCCC-----------------CCCCChhhhhhhhcCCC
Q 011044          333 LVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSAD-----------------VPLPNLEELFLWEYGRE  383 (495)
Q Consensus       333 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------~~l~~L~~L~l~~~~~~  383 (495)
                      +. .+|..+..+++|++|++++|.+. .+|....                 ..+++|++|++.+|...
T Consensus       399 l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~  464 (549)
T 2z81_A          399 FH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK  464 (549)
T ss_dssp             CC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             Cc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC
Confidence            76 45666666777777777777665 3332211                 13556666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=6.3e-35  Score=282.54  Aligned_cols=266  Identities=22%  Similarity=0.299  Sum_probs=178.2

Q ss_pred             CCChHHHHHHHHHHhhCCCCCCccccCCC----CCCCCCCccceeeeCC--------CCCCeEEEEcCCCCCcccCchhc
Q 011044            8 TSITTDQQALLVLKAHVTDDPTNFLAKNW----NTSSSFCYWTGVTCDV--------RSHRVAALNISGLNLTGTIPSEL   75 (495)
Q Consensus         8 ~~~~~~~~~ll~~~~~~~~~~~~~l~~~w----~~~~~~c~w~gv~c~~--------~~~~l~~L~L~~~~l~~~~~~~l   75 (495)
                      ....+|+.||++||+.+..|+.+.+. +|    ....++|.|.|+.|..        ..++|+.|+|+++.++ .+|..+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            34556889999999998667877776 99    4567899999999842        2478999999999998 778888


Q ss_pred             cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCC-----
Q 011044           76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSS-----  150 (495)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-----  150 (495)
                      .++++|++|+|++|.++ .+|..+.++++|++|++++|.+. .+|..+.. +++|++|++++|.+.+.+|..+..     
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchh
Confidence            88999999999999998 88888999999999999999886 77877766 889999999988887777776543     


Q ss_pred             ----CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCC
Q 011044          151 ----CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL  226 (495)
Q Consensus       151 ----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  226 (495)
                          +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence                555555555555555 445555555555555555555542 33345555555555555555554455445555555


Q ss_pred             ceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccc
Q 011044          227 LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY  281 (495)
Q Consensus       227 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  281 (495)
                      ++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.+++.
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~  309 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVP  309 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECC
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCC
Confidence            5555555544444444444444444444444444444444433 34444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5e-34  Score=298.99  Aligned_cols=309  Identities=20%  Similarity=0.185  Sum_probs=259.5

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .+++.|+++++.++...+..+.++++|++|+|++|.+++..|..|..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCCEEE
Confidence            5679999999999877777789999999999999999988888999999999999999999765554444 499999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++..+..|+++++|++|++++|.+++..|..|+.+++|++|++++|.+++. +  ++.+++|+.|++++|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence            999999965556679999999999999999988888899999999999999999854 2  6678899999999998864


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                           +...++|+.|++++|.+....+.   ..++|+.|++++|.+++.  ..+. .+++|+.|++++|.+.+..|..+.
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGT
T ss_pred             -----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhc-cCCCCCEEECCCCccCCCCHHHhc
Confidence                 34456899999999988754332   236899999999998752  3444 788999999999999888888899


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhh
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE  374 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  374 (495)
                      .+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ ++   ...+++|+.
T Consensus       276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~  349 (597)
T 3oja_B          276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKN  349 (597)
T ss_dssp             TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSE
T ss_pred             CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCE
Confidence            99999999999999885 5666777899999999999988 466677888999999999999874 33   335788888


Q ss_pred             hhhhhcCCCc
Q 011044          375 LFLWEYGREG  384 (495)
Q Consensus       375 L~l~~~~~~~  384 (495)
                      |++.+|...+
T Consensus       350 L~l~~N~~~~  359 (597)
T 3oja_B          350 LTLSHNDWDC  359 (597)
T ss_dssp             EECCSSCEEH
T ss_pred             EEeeCCCCCC
Confidence            8888877653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=304.53  Aligned_cols=321  Identities=22%  Similarity=0.208  Sum_probs=279.5

Q ss_pred             EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      +..+.++++++. +|.   -.++|++|+|++|.+++..+..|.++++|++|++++|...+.+++..+..+++|++|++++
T Consensus         7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            456777888884 444   4689999999999999888999999999999999999877888655556699999999999


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCccccCcc--ccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCC
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKE--IGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      |.+.+..|..|+++++|++|++++|.+++.+|..  +..+++|++|++++|.+.+..+ ..|+++++|++|++++|.+++
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999888999999999999999999999866665  8999999999999999987654 579999999999999999998


Q ss_pred             cCchhhhcC--CCCceeeCCCCcCCCCCCcccccccc------cceeeccCcccccccchhhhhC---------------
Q 011044          215 TIPSSIFSL--SSLLNLDLSLNNFTGIIPSSIGNLSS------LQKLYLSDNQLSGELPANIGNN---------------  271 (495)
Q Consensus       215 ~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~~~~~~---------------  271 (495)
                      ..+..+..+  ++|+.|++++|.+.+..+..++.+.+      |+.|++++|.+++..+..+...               
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            888888887  89999999999999888877777665      9999999998775554433211               


Q ss_pred             ----------------------CccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCc
Q 011044          272 ----------------------LPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLS  329 (495)
Q Consensus       272 ----------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  329 (495)
                                            .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  322 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS  322 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence                                  2579999999999998888899999999999999999998888899999999999999


Q ss_pred             CCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          330 HNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       330 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      +|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++.+|...
T Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          323 YNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             SCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCC
Confidence            99999888999999999999999999997 455555567888888888877654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.2e-34  Score=281.73  Aligned_cols=309  Identities=21%  Similarity=0.190  Sum_probs=261.6

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .+++.|+++++.++...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCEEE
Confidence            67899999999998766666899999999999999999888889999999999999999997655554544 99999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence            999999954445578999999999999999988788899999999999999998854   36778999999999998863


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                           +...++|++|++++|.+.....   ...++|+.|++++|.+++.  ..+. .+++|++|++++|.+.+..+..+.
T Consensus       201 -----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          201 -----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             -----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGT
T ss_pred             -----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHc-CCCCccEEECCCCcCCCcChhHcc
Confidence                 2345689999999999886532   2357899999999999843  3344 789999999999999988889999


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhh
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE  374 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  374 (495)
                      .+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|+.|++++|++.+ ++   ...+++|+.
T Consensus       270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~  343 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKN  343 (390)
T ss_dssp             TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSE
T ss_pred             ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC---chhhccCCE
Confidence            99999999999999985 5666778999999999999988 456677889999999999999973 44   335789999


Q ss_pred             hhhhhcCCCc
Q 011044          375 LFLWEYGREG  384 (495)
Q Consensus       375 L~l~~~~~~~  384 (495)
                      |++.+|...+
T Consensus       344 L~l~~N~~~~  353 (390)
T 3o6n_A          344 LTLSHNDWDC  353 (390)
T ss_dssp             EECCSSCEEH
T ss_pred             EEcCCCCccc
Confidence            9998887553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-34  Score=293.24  Aligned_cols=311  Identities=22%  Similarity=0.261  Sum_probs=257.2

Q ss_pred             EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      ++|++++++++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCC
Confidence            57999999999 5676665  89999999999999877789999999999999999998766777765 99999999999


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc--cEEEecCCcC--
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL--EMLWLQNNSL--  212 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--  212 (495)
                      |.++ .+|..  .+++|++|++++|.+++ .+|..++.+++|++|++++|.+.+   ..+..+++|  +.|++++|.+  
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            9998 56665  89999999999999987 478899999999999999999875   457778888  9999999998  


Q ss_pred             CCcCchhhhcCC--------------------------------------------------------------------
Q 011044          213 TGTIPSSIFSLS--------------------------------------------------------------------  224 (495)
Q Consensus       213 ~~~~~~~l~~l~--------------------------------------------------------------------  224 (495)
                      .+..|..+..+.                                                                    
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence            555555554422                                                                    


Q ss_pred             ---------------CCceeeCCCCcCCCCCCccc-----ccccccceeeccCcccccccc-hhh---------------
Q 011044          225 ---------------SLLNLDLSLNNFTGIIPSSI-----GNLSSLQKLYLSDNQLSGELP-ANI---------------  268 (495)
Q Consensus       225 ---------------~L~~L~Ls~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~---------------  268 (495)
                                     +|++|++++|.+++.+|..+     +.+++|+.+++++|.+  .+| ..+               
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence                           56777777777776777666     6666666666666655  233 111               


Q ss_pred             ---------hhCCccccccccccceeeecccccccCCCCCCeeecccccccc--cCCccccCCCcCCEEeCcCCcccccC
Q 011044          269 ---------GNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG--KIPHEIGNLRKLEWLMLSHNKLVGVV  337 (495)
Q Consensus       269 ---------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~  337 (495)
                               ...+++|++|++++|.+++..|..+..+++|+.|++++|++++  .+|..+..+++|++|++++|.+.+.+
T Consensus       311 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             CCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence                     1367899999999999998889999999999999999999986  55677899999999999999999855


Q ss_pred             Cc-CccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          338 PA-PIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       338 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      |. .+..+++|+.|++++|++++.+|....   ++|+.|++..|...
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK  434 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCC
T ss_pred             ccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCCccc
Confidence            54 478899999999999999877765432   68999999998776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.9e-33  Score=295.43  Aligned_cols=327  Identities=23%  Similarity=0.215  Sum_probs=213.2

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccc-----cCCh---hHhhcC
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG-----ELPP---NFCNQM  127 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~p~---~~~~~l  127 (495)
                      +++.|++++|.+++..+..|+.+++|++|++++|.+.+..|..+.++++|++|++++|...+     .+|.   ..+..+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            36666666666666666666666666666666666666666666666666666666554322     1221   122336


Q ss_pred             CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCcccc--CccccC--CCCCCEEEccCCCCCCCCChhhhCccccc
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI--PKEIGN--LTKLTRLNLRQNKLQGEIPEELGNLAELE  203 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  203 (495)
                      ++|++|++++|.+.+..+..|.++++|++|++++|.+....  ...+..  .++|++|++++|.+++..|..+..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            67777777777776666666677777777777666543211  111222  24666777777777666666777777777


Q ss_pred             EEEecCCcCCCcCc-hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc--cccchhhhhCCcccccccc
Q 011044          204 MLWLQNNSLTGTIP-SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS--GELPANIGNNLPSLQTLSL  280 (495)
Q Consensus       204 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~L  280 (495)
                      .|++++|.+++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.  +..|..+. .+++|+.|++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~L  487 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDL  487 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEEC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEEC
Confidence            77777777765554 56677777777777777777666666777777777777777664  34455444 6777777777


Q ss_pred             ccceeeecccccccCCCCCCeeecccccccccCC--------ccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEc
Q 011044          281 YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIP--------HEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQL  352 (495)
Q Consensus       281 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  352 (495)
                      ++|.+++..+..+..+++|+.|++++|++++..+        ..|..+++|++|++++|++....+..|..+++|+.|++
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L  567 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL  567 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence            7777776666667777777777777777764311        23667777777777777777544455777777788888


Q ss_pred             cCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044          353 HNNSLSGSLPSSADVPLPNLEELFLWEYGREG  384 (495)
Q Consensus       353 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  384 (495)
                      ++|+++ .+|...+..+++|+.|++.+|...+
T Consensus       568 s~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          568 GLNNLN-TLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             CCCCCC-cCCHhHhCCCCCCCEEECCCCcCCc
Confidence            777777 5566555567777777777776554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-32  Score=289.22  Aligned_cols=142  Identities=23%  Similarity=0.237  Sum_probs=125.2

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      +..+++|+|++|.|++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+. .+|...+..+++|++|
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            468999999999999888889999999999999999999888888999999999999999985 5666655669999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhh
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEEL  196 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  196 (495)
                      ++++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..+
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence            999999997767789999999999999999975 467888999999999999998876544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.5e-33  Score=288.84  Aligned_cols=313  Identities=27%  Similarity=0.246  Sum_probs=245.3

Q ss_pred             eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044           57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK  136 (495)
Q Consensus        57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~  136 (495)
                      .++++++++++++ +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus        33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECT
T ss_pred             CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECC
Confidence            4899999999995 666554  89999999999999888889999999999999999997766666655 9999999999


Q ss_pred             cccCCccCCcccCCCCCCCEEEcccCcCcc-ccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc--cEEEecCCcC-
Q 011044          137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSG-TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL--EMLWLQNNSL-  212 (495)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l-  212 (495)
                      +|.++ .+|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+.+.   .+..+++|  +.|++++|.+ 
T Consensus       109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred             CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence            99998 56665  89999999999999986 3468899999999999999999863   35555555  9999999988 


Q ss_pred             -CCcCchhhhcCC-------------------------------------------------------------------
Q 011044          213 -TGTIPSSIFSLS-------------------------------------------------------------------  224 (495)
Q Consensus       213 -~~~~~~~l~~l~-------------------------------------------------------------------  224 (495)
                       ++..|..+..+.                                                                   
T Consensus       183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence             655555554432                                                                   


Q ss_pred             --------------CCceeeCCCCcCCCCCCccc----------------------------------------------
Q 011044          225 --------------SLLNLDLSLNNFTGIIPSSI----------------------------------------------  244 (495)
Q Consensus       225 --------------~L~~L~Ls~n~l~~~~~~~l----------------------------------------------  244 (495)
                                    +|++|++++|.+.+.+|..+                                              
T Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence                          67777777777776666544                                              


Q ss_pred             -------ccccccceeeccCcccccccchhhhhCCccccccccccceeee--cccccccCCCCCCeeecccccccccCCc
Q 011044          245 -------GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG--AIPKEIGNLTKLTDLYLDQNKLQGKIPH  315 (495)
Q Consensus       245 -------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~  315 (495)
                             ..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++  .+|..+..+++|+.|++++|++++.+|.
T Consensus       343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred             cccccCccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence                   4566777788888877765665554 67788888888887775  3345677778888888888887763443


Q ss_pred             -cccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044          316 -EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG  384 (495)
Q Consensus       316 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  384 (495)
                       .+..+++|++|++++|++.+..+..+.  ++|+.|++++|++. .+|...+ .+++|+.|++.+|....
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKS  487 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCCC
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCCC
Confidence             467778888888888887766655443  67888888888887 6777666 68889999888887763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=287.66  Aligned_cols=189  Identities=25%  Similarity=0.277  Sum_probs=165.1

Q ss_pred             hCcccccEEEecCCcCCCcC--chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcc
Q 011044          197 GNLAELEMLWLQNNSLTGTI--PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS  274 (495)
Q Consensus       197 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  274 (495)
                      ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+...+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            45678899999999887543  67889999999999999999876555 8899999999999999986666444458999


Q ss_pred             ccccccccceeeecccccccCCCCCCeeeccccccc-ccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044          275 LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ-GKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH  353 (495)
Q Consensus       275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  353 (495)
                      |++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++.+..|..+..+++|+.|+++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            999999999999889999999999999999999998 4688899999999999999999999989999999999999999


Q ss_pred             CCcCceecCCCCCCCCCChhhhhhhhcCCCcccc
Q 011044          354 NNSLSGSLPSSADVPLPNLEELFLWEYGREGRVS  387 (495)
Q Consensus       354 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  387 (495)
                      +|++.+. +...+..+++|+.+++.+|...+..+
T Consensus       503 ~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          503 SNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             SSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcCCCC-CHHHhhcccCCcEEEecCCcccCCCc
Confidence            9999855 44445578999999999998876544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.5e-32  Score=265.94  Aligned_cols=304  Identities=23%  Similarity=0.353  Sum_probs=254.3

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|+++++.++..  +.+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+ ++ .+. .+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~-~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQ-NLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGT-TCTTCSEE
T ss_pred             cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHc-CCCcCCEE
Confidence            36899999999999754  3488999999999999999854 33 8999999999999999864 43 444 49999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            9999999853 33 8899999999999996664444 48899999999999999875433  889999999999999998


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      +. +. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+++ ++. + ..+++|++|++++|.+++.  ..+
T Consensus       191 ~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          191 DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-L-ANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC--GGG
T ss_pred             cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-h-hcCCCCCEEECCCCccCCC--hhH
Confidence            54 33 8889999999999999987654  7889999999999999984 443 3 3789999999999998753  468


Q ss_pred             cCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChh
Q 011044          294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLE  373 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  373 (495)
                      ..+++|+.|++++|.+++.  ..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|   ...+++|+
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~  336 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMD  336 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCS
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccc
Confidence            8999999999999999854  458899999999999999998888889999999999999999986655   34688999


Q ss_pred             hhhhhhcCCC
Q 011044          374 ELFLWEYGRE  383 (495)
Q Consensus       374 ~L~l~~~~~~  383 (495)
                      ++++.+|..+
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999887643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.7e-33  Score=290.09  Aligned_cols=318  Identities=24%  Similarity=0.255  Sum_probs=204.4

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccc-cCChhHhhcCCCCCE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFG-ELPPNFCNQMSNLES  132 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~  132 (495)
                      .+++++|++++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+.. +++|++
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~  127 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQT  127 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT-CTTCCE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc-cCCccE
Confidence            4678888888888888877888888888888888888887766678888888888888888865 34444444 888888


Q ss_pred             EEcccccCCccCC-cccCCCCCCCEEEcccCcCccccCccccCC------------------------CCCCEEEccCCC
Q 011044          133 LFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEIGNL------------------------TKLTRLNLRQNK  187 (495)
Q Consensus       133 L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------------------------~~L~~L~L~~n~  187 (495)
                      |++++|.+.+.++ ..+.++++|++|++++|.+++..|..++.+                        ++|++|++++|.
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            8888887444444 578888888888888888887777666554                        455555555555


Q ss_pred             CCCCC--Chh-----------------------------hhCc-------------------------------------
Q 011044          188 LQGEI--PEE-----------------------------LGNL-------------------------------------  199 (495)
Q Consensus       188 l~~~~--~~~-----------------------------l~~l-------------------------------------  199 (495)
                      +++..  +..                             +..+                                     
T Consensus       208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  287 (549)
T 2z81_A          208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT  287 (549)
T ss_dssp             CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred             cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence            54321  000                             0001                                     


Q ss_pred             ----------------------ccccEEEecCCcCCCcCchhh-hcCCCCceeeCCCCcCCCCCC---ccccccccccee
Q 011044          200 ----------------------AELEMLWLQNNSLTGTIPSSI-FSLSSLLNLDLSLNNFTGIIP---SSIGNLSSLQKL  253 (495)
Q Consensus       200 ----------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~---~~l~~~~~L~~L  253 (495)
                                            ++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..|   ..++.+++|+.|
T Consensus       288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L  366 (549)
T 2z81_A          288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL  366 (549)
T ss_dssp             EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred             ccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence                                  12333333333332 233333 346666666666666655432   224555666666


Q ss_pred             eccCcccccccch--hhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCC
Q 011044          254 YLSDNQLSGELPA--NIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN  331 (495)
Q Consensus       254 ~l~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  331 (495)
                      ++++|.+++ ++.  .....+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++..+  .++|++|++++|
T Consensus       367 ~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N  441 (549)
T 2z81_A          367 VLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNN  441 (549)
T ss_dssp             ECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSS
T ss_pred             EccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCC
Confidence            666666652 221  12225666666666666665 455556666666666666666652 23221  246666666666


Q ss_pred             cccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCcc
Q 011044          332 KLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGR  385 (495)
Q Consensus       332 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~  385 (495)
                      ++++..    ..+++|+.|++++|++. .+|...  .+++|+.|++.+|...+.
T Consensus       442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~--~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          442 NLDSFS----LFLPRLQELYISRNKLK-TLPDAS--LFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             CCSCCC----CCCTTCCEEECCSSCCS-SCCCGG--GCTTCCEEECCSSCCCCC
T ss_pred             Chhhhc----ccCChhcEEECCCCccC-cCCCcc--cCccCCEEecCCCccCCc
Confidence            665432    46889999999999997 777643  588999999998877653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-33  Score=269.65  Aligned_cols=249  Identities=32%  Similarity=0.496  Sum_probs=188.7

Q ss_pred             CCCCEEeCcCCcCCc--cCCccccCCCCCcEEEccC-CcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044           79 SSLQALDLSFNWFYG--SIPSSIFNMSSLLSIYFNN-NTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR  155 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (495)
                      .++++|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++.+|..+.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            578889999999888  7888888888899999885 8888888887766 88888888888888877888888888888


Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcc-cccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA-ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      +|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            888888888878888888888888888888888877888888877 788888888888777777777776 888888888


Q ss_pred             cCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCC
Q 011044          235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIP  314 (495)
Q Consensus       235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  314 (495)
                      .+++..|..+..+++|+.|++++|.+++..+. +. .+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            77777777777777777777777777644443 22 45666666666666666666666666666666666666665555


Q ss_pred             ccccCCCcCCEEeCcCCc
Q 011044          315 HEIGNLRKLEWLMLSHNK  332 (495)
Q Consensus       315 ~~l~~l~~L~~L~l~~n~  332 (495)
                      .. ..+++|+.+++++|+
T Consensus       286 ~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSS
T ss_pred             CC-ccccccChHHhcCCC
Confidence            43 555666666666664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.7e-32  Score=273.39  Aligned_cols=303  Identities=29%  Similarity=0.411  Sum_probs=220.5

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++|++++|.+.+. +. + ..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~-~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-L-KNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-G-TTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-H-cCCCCCCEE
Confidence            4689999999999986643  8899999999999999886544  88999999999999988654 33 3 448999999


Q ss_pred             EcccccCCccCCc--------------------ccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC
Q 011044          134 FLKYNMFHGKIPS--------------------TLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP  193 (495)
Q Consensus       134 ~l~~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  193 (495)
                      ++++|.+.+ ++.                    .+.++++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+
T Consensus       140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc
Confidence            999988764 221                    244556666666666666532  236666777777777776665433


Q ss_pred             hhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCc
Q 011044          194 EELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP  273 (495)
Q Consensus       194 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  273 (495)
                        ++.+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++. +. +. .++
T Consensus       217 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~-~l~  287 (466)
T 1o6v_A          217 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LA-GLT  287 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GT-TCT
T ss_pred             --ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-cc-CCC
Confidence              56677777777777776642  356677777777777777776544  67777788888888877643 32 33 677


Q ss_pred             cccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044          274 SLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH  353 (495)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  353 (495)
                      +|+.|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++.+.  ..+..+++|+.|+++
T Consensus       288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG  361 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence            88888888887775433  6777888888888888876544  66788888888888887754  467788888888888


Q ss_pred             CCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044          354 NNSLSGSLPSSADVPLPNLEELFLWEYGREG  384 (495)
Q Consensus       354 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  384 (495)
                      +|++.+..|   ...+++|+.|++.+|...+
T Consensus       362 ~n~l~~~~~---~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          362 HNQISDLTP---LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred             CCccCccch---hhcCCCCCEEeccCCcccC
Confidence            888887666   3467888888888777655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=2e-31  Score=258.67  Aligned_cols=288  Identities=23%  Similarity=0.315  Sum_probs=202.6

Q ss_pred             eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044           57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK  136 (495)
Q Consensus        57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~  136 (495)
                      ++.++++++.++ .+|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus        33 l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls  108 (330)
T 1xku_A           33 LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS  108 (330)
T ss_dssp             TTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred             CeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECC
Confidence            445555666665 344333  257777777777777666667777777777777777776555655554 7778888887


Q ss_pred             cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC--CCChhhhCcccccEEEecCCcCCC
Q 011044          137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG--EIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+..+.++++|++|++++|.++ 
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            77776 4454443  677888888887776666667777888888888777753  45666777788888888888776 


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                      .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|.++ .+|..+.
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhc
Confidence            3444433  6788888888888777777777888888888888887754444444 6778888888888877 6677778


Q ss_pred             CCCCCCeeecccccccccCCccccC------CCcCCEEeCcCCcccc--cCCcCccCCCCCcEEEccCCc
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGN------LRKLEWLMLSHNKLVG--VVPAPIFNLSTLISLQLHNNS  356 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  356 (495)
                      .+++|++|++++|++++..+..|..      .+.|+.|++++|++..  ..|..+..+.+++.+++++|+
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            8888888888888887655555533      3678888888888753  455677788888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=2.1e-31  Score=258.72  Aligned_cols=288  Identities=23%  Similarity=0.315  Sum_probs=227.1

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      +++.+++++++++ .+|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEEC
Confidence            3556777777776 455544  368899999999888777778888999999999999887665666655 889999999


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC--CCCChhhhCcccccEEEecCCcCC
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ--GEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.++  +..+..+..+ +|++|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999887 5565554  78999999999888666667888899999999999885  3566667777 8999999999887


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      + +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.++ .+|..+
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTG
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhh
Confidence            4 555443  7899999999999888878888899999999999998855444554 7889999999999888 677778


Q ss_pred             cCCCCCCeeecccccccccCCccccC------CCcCCEEeCcCCccc--ccCCcCccCCCCCcEEEccCCc
Q 011044          294 GNLTKLTDLYLDQNKLQGKIPHEIGN------LRKLEWLMLSHNKLV--GVVPAPIFNLSTLISLQLHNNS  356 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~  356 (495)
                      ..+++|+.|++++|++++..+..|..      ...|+.|++++|++.  +..+..+..+++|+.+++++|+
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88999999999999998765555554      367899999999877  5667778889999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=4.3e-31  Score=256.32  Aligned_cols=283  Identities=22%  Similarity=0.282  Sum_probs=197.4

Q ss_pred             CCCccceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEcc
Q 011044           41 SFCYWTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFN  111 (495)
Q Consensus        41 ~~c~w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  111 (495)
                      +.|.|+.+.|...         ++.++.|++++|.+++..+..|+++++|++|++++|.+++..|..+.++++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            3466777766431         3567777888777777666677777788888888777776667777777788888887


Q ss_pred             CCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCcc--ccCccccCCCCCCEEEccCCCCC
Q 011044          112 NNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG--TIPKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       112 ~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      +|.+. .+|..+   .++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++
T Consensus       109 ~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            77774 555544   3677778888777776666667777778888887777753  55666777777888888777776


Q ss_pred             CCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhh
Q 011044          190 GEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG  269 (495)
Q Consensus       190 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  269 (495)
                       .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.
T Consensus       185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          185 -TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             -SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             -cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence             3444332  67777888877777666777777777888888877777766666777777888888877776 6666554


Q ss_pred             hCCccccccccccceeeecccccccC------CCCCCeeecccccccc--cCCccccCCCcCCEEeCcCCc
Q 011044          270 NNLPSLQTLSLYVNDFSGAIPKEIGN------LTKLTDLYLDQNKLQG--KIPHEIGNLRKLEWLMLSHNK  332 (495)
Q Consensus       270 ~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~  332 (495)
                       .+++|++|++++|.+++..+..+..      .+.++.|++++|++..  ..|..|..+++++.+++++|+
T Consensus       261 -~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          261 -DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             -cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             6777777888777777554444432      3567777777777653  345567777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=3.4e-31  Score=257.30  Aligned_cols=267  Identities=23%  Similarity=0.305  Sum_probs=140.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..+.   ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEE
Confidence            34555555555555554555555555555555555555555555555555555555555553 4444332   4555555


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCc--cccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFS--GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL  212 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  212 (495)
                      +++|.+....+..+.++++|++|++++|.++  +..+..+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence            5555555444444555555555555555553  2334444444 55555555555553 333222  4555555555555


Q ss_pred             CCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccc
Q 011044          213 TGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE  292 (495)
Q Consensus       213 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  292 (495)
                      ++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++..+..
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhH
Confidence            5444455555555555555555555555545555555555555555555 4554443 4555555555555555433333


Q ss_pred             ccC------CCCCCeeeccccccc--ccCCccccCCCcCCEEeCcCC
Q 011044          293 IGN------LTKLTDLYLDQNKLQ--GKIPHEIGNLRKLEWLMLSHN  331 (495)
Q Consensus       293 l~~------l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~l~~n  331 (495)
                      +..      .+.|+.|++++|++.  +..+..|..+++|+.+++++|
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            322      244555555555554  334445555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=4e-31  Score=262.70  Aligned_cols=286  Identities=23%  Similarity=0.246  Sum_probs=250.5

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..++..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            68999999999999888889999999999999999999888888999999999999999995 77777666699999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|++|++++|.+.+     +...++|++|++++|.+..
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV  219 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeee
Confidence            999999987788899999999999999999864   36678999999999998763     3455789999999999984


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                      . +.  ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++ ++..+.
T Consensus       220 ~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~~  292 (390)
T 3o6n_A          220 V-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQ  292 (390)
T ss_dssp             E-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCE-EECSSS
T ss_pred             c-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCcc-cCcccC
Confidence            4 33  2357999999999999865  4688999999999999999976676665 79999999999999985 456677


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCcee
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS  360 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  360 (495)
                      .+++|+.|++++|++. .+|..+..+++|++|++++|++...   .+..+++|+.|++++|++.+.
T Consensus       293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---CchhhccCCEEEcCCCCccch
Confidence            8999999999999998 5677788999999999999999854   367889999999999998743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=6.3e-31  Score=257.07  Aligned_cols=282  Identities=28%  Similarity=0.421  Sum_probs=241.3

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|++++|.+++.. . +..+++|++|++++|.+++ + ..+.++++|++|++++|.+.+ ++. + ..+++|++|
T Consensus        65 ~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~-~~l~~L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-L-ANLTKMYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-G-TTCTTCCEE
T ss_pred             cCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-h-ccCCceeEE
Confidence            478999999999998653 3 9999999999999999985 3 368999999999999999864 444 4 449999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.....+ ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|+.|++++|.++
T Consensus       138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          138 NLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             ECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCC
Confidence            99999766444 448999999999999999885433  88999999999999999854 33 889999999999999998


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      +..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+. .+++|++|++++|.+++.  ..+
T Consensus       213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~-~l~~L~~L~l~~n~l~~~--~~~  283 (347)
T 4fmz_A          213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AVK-DLTKLKMLNVGSNQISDI--SVL  283 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hHh-cCCCcCEEEccCCccCCC--hhh
Confidence            5543  8899999999999999987654  8899999999999999984 43 333 789999999999999854  468


Q ss_pred             cCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          294 GNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      ..+++|+.|++++|++.+..+..++.+++|++|++++|++.+..|  +..+++|+.|++++|+++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            899999999999999998888889999999999999999987665  889999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=7.2e-31  Score=275.02  Aligned_cols=286  Identities=23%  Similarity=0.255  Sum_probs=251.7

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++|+.|+|++|.+++..+..|+.+++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|..++..+++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence            68999999999999988889999999999999999999888888999999999999999996 67777656699999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++..|..|..+++|++|++++|.+++.   .++.+++|++|++++|.+.+     +...++|+.|++++|.++.
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV  225 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence            999999988888999999999999999999864   35678999999999998863     3456789999999999874


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                      . +..+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++ ++..+.
T Consensus       226 ~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~  298 (597)
T 3oja_B          226 V-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQ  298 (597)
T ss_dssp             E-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE-EECSSS
T ss_pred             c-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC-CCcccc
Confidence            3 3222  36899999999999874  5688999999999999999977777776 89999999999999985 566678


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCcee
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGS  360 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  360 (495)
                      .+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+.+.   .+..+++|+.|++++|++.+.
T Consensus       299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred             cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCCh
Confidence            8999999999999998 6778888999999999999999864   367889999999999998743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=1.8e-30  Score=264.00  Aligned_cols=304  Identities=30%  Similarity=0.423  Sum_probs=213.4

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++.|++.++.++. ++ .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  + ..+++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--L-ANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G-TTCTTCCEEE
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--h-cCCCCCCEEE
Confidence            579999999999875 44 48899999999999999986544  8999999999999999965544  4 4499999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCc--------------------cccCCCCCCEEEccCCCCCCCCCh
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK--------------------EIGNLTKLTRLNLRQNKLQGEIPE  194 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------~l~~l~~L~~L~L~~n~l~~~~~~  194 (495)
                      +++|.+++. +. +.++++|++|++++|.+.+. +.                    .+..+++|++|++++|.+.+.  .
T Consensus       119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~  193 (466)
T 1o6v_A          119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--S  193 (466)
T ss_dssp             CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--G
T ss_pred             CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--h
Confidence            999999854 33 89999999999999988743 21                    134455566666666665532  2


Q ss_pred             hhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcc
Q 011044          195 ELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS  274 (495)
Q Consensus       195 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  274 (495)
                      .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +. .+++
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~  266 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTK  266 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTT
T ss_pred             hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCC
Confidence            35566666666666666654333  55566666666666666543  245666677777777776664333  22 5677


Q ss_pred             ccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccC
Q 011044          275 LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN  354 (495)
Q Consensus       275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  354 (495)
                      |+.|++++|.+++..+  +..+++|+.|++++|++.+..+  ++.+++|+.|++++|++.+..+  +..+++|+.|++++
T Consensus       267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN  340 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred             CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence            7777777777764333  6667777777777777765332  6677777777777777776544  56777777777777


Q ss_pred             CcCceecCCCCCCCCCChhhhhhhhcCCCccc
Q 011044          355 NSLSGSLPSSADVPLPNLEELFLWEYGREGRV  386 (495)
Q Consensus       355 n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  386 (495)
                      |++.+. +  ....+++|+.|++.+|...+..
T Consensus       341 n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          341 NKVSDV-S--SLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             SCCCCC-G--GGTTCTTCCEEECCSSCCCBCG
T ss_pred             CccCCc-h--hhccCCCCCEEeCCCCccCccc
Confidence            777643 2  2335777888888777765443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.3e-30  Score=261.52  Aligned_cols=206  Identities=20%  Similarity=0.214  Sum_probs=111.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +++++|++++|.+++. | .++.+++|++|++++|.+++. |  +..+++|++|++++|.+.+ ++  + ..+++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~-~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V-TPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C-TTCTTCCEEE
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c-CCCCcCCEEE
Confidence            4566666666666543 2 456666666666666666542 2  5566666666666666543 22  2 2366666666


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++ ++  ++.+++|++|++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|+.|++++|.+++
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            66666654 22  55666666666666666542   2455555566666555433333  24555555555555555553


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG  287 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  287 (495)
                       +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  +. .+++|+.|++++|.+++
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSC
T ss_pred             -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCC
Confidence             22  44555555555555555543   24455555555555555553 33  22 44555555555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=3.4e-29  Score=253.03  Aligned_cols=276  Identities=21%  Similarity=0.175  Sum_probs=230.4

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|++++|.+++. +  ++.+++|++|++++|.+++. +  +.++++|++|++++|.+.+ +|  + ..+++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~-~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--V-SQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--C-CCCCcCCEE
Confidence            47899999999999975 3  89999999999999999864 3  8899999999999999975 55  3 449999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.++
T Consensus       133 ~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          133 NCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             ECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence            9999999963   3889999999999999665555  47889999999999999986 45  889999999999999998


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCc-------cccccccccceee
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP-------SLQTLSLYVNDFS  286 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-------~L~~L~L~~n~l~  286 (495)
                      +.   .+..+++|++|++++|.+++ +|  ++.+++|+.|++++|.+++..+..+. .+.       +|+.|++++|.+.
T Consensus       205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~-~L~~L~l~~n~L~~L~l~~n~~~  277 (457)
T 3bz5_A          205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS-KLTTLHCIQTDLLEIDLTHNTQL  277 (457)
T ss_dssp             CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT-TCCEEECTTCCCSCCCCTTCTTC
T ss_pred             ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC-CCCEEeccCCCCCEEECCCCccC
Confidence            64   38889999999999999998 44  78999999999999999854332221 232       4566777777666


Q ss_pred             ecccccccCCCCCCeeecccccccccCCc--------cccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          287 GAIPKEIGNLTKLTDLYLDQNKLQGKIPH--------EIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       287 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      +.+|  +..+++|+.|++++|...+.+|.        .+..+++|++|++++|++++.   .+..+++|+.|++++|++.
T Consensus       278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCC
T ss_pred             Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCC
Confidence            5555  46789999999999986654443        356778999999999999974   3889999999999999998


Q ss_pred             e
Q 011044          359 G  359 (495)
Q Consensus       359 ~  359 (495)
                      +
T Consensus       353 ~  353 (457)
T 3bz5_A          353 D  353 (457)
T ss_dssp             B
T ss_pred             C
Confidence            5

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=7.2e-29  Score=262.12  Aligned_cols=157  Identities=25%  Similarity=0.323  Sum_probs=131.6

Q ss_pred             EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc
Q 011044           60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM  139 (495)
Q Consensus        60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~  139 (495)
                      .+-++.+++ .+|..+.  +++++|+|++|.|++..+.+|.++++|++|+|++|.+. .+|+..+..+++|++|+|++|+
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCc
Confidence            455556676 5565442  47999999999999877889999999999999999996 4555544559999999999999


Q ss_pred             CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC-CCChhhhCcccccEEEecCCcCCCcCch
Q 011044          140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG-EIPEELGNLAELEMLWLQNNSLTGTIPS  218 (495)
Q Consensus       140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~  218 (495)
                      +++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            997777789999999999999999997777789999999999999999875 4678889999999999999988754444


Q ss_pred             hh
Q 011044          219 SI  220 (495)
Q Consensus       219 ~l  220 (495)
                      .+
T Consensus       192 ~l  193 (635)
T 4g8a_A          192 DL  193 (635)
T ss_dssp             GG
T ss_pred             cc
Confidence            33

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-29  Score=243.79  Aligned_cols=253  Identities=24%  Similarity=0.277  Sum_probs=182.7

Q ss_pred             CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCccc--cc
Q 011044           41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLF--GE  118 (495)
Q Consensus        41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~  118 (495)
                      +.|.|+++.|..            ++++ .+|..+  .++|++|++++|.++...+..+.++++|++|++++|.+.  +.
T Consensus         5 C~C~~~~l~c~~------------~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   69 (306)
T 2z66_A            5 CSCSGTEIRCNS------------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC   69 (306)
T ss_dssp             CEEETTEEECCS------------SCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred             CeeCCCEEEcCC------------CCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence            457888887754            3343 333322  367888888888887444455788888888888888875  23


Q ss_pred             CChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCCCCCChhhh
Q 011044          119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQGEIPEELG  197 (495)
Q Consensus       119 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~  197 (495)
                      .+..+.. +++|++|++++|.+. .++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.
T Consensus        70 ~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  147 (306)
T 2z66_A           70 CSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  147 (306)
T ss_dssp             EEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT
T ss_pred             ccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc
Confidence            3555555 888888888888877 466667888888888888888875544 4677888888888888888777777778


Q ss_pred             CcccccEEEecCCcCCC-cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccc
Q 011044          198 NLAELEMLWLQNNSLTG-TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ  276 (495)
Q Consensus       198 ~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  276 (495)
                      .+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~  226 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQ  226 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-TCTTCC
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc-CcccCC
Confidence            88888888888888775 4667777788888888888888777677777777788888887777643333333 566777


Q ss_pred             ccccccceeeecccccccCCC-CCCeeecccccccc
Q 011044          277 TLSLYVNDFSGAIPKEIGNLT-KLTDLYLDQNKLQG  311 (495)
Q Consensus       277 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~  311 (495)
                      .|++++|.+.+..+..+..++ +|+.|++++|++++
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            777777777666666666663 67777777776664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=247.86  Aligned_cols=277  Identities=22%  Similarity=0.243  Sum_probs=138.5

Q ss_pred             CCCCCCCCCccceeeeCCC-----------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCC
Q 011044           35 NWNTSSSFCYWTGVTCDVR-----------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMS  103 (495)
Q Consensus        35 ~w~~~~~~c~w~gv~c~~~-----------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  103 (495)
                      .|......|.|.++ |+..           ++++++|++++|.+++..+..+.++++|++|++++|.+++..+..+.+++
T Consensus        22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            55556677888776 5321           22455555555555544443455555555555555555544444455555


Q ss_pred             CCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCC-cccCCCCCCCEEEcccC-cCccccCccccCCCCCCEE
Q 011044          104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRELSLSSN-YFSGTIPKEIGNLTKLTRL  181 (495)
Q Consensus       104 ~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L  181 (495)
                      +|++|++++|.+. .+|...+..+++|++|++++|.++...+ ..+.++++|++|++++| .+....+..+..+++|++|
T Consensus       101 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            5555555555543 3333323335555555555555442211 24445555555555554 2333333444445555555


Q ss_pred             EccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044          182 NLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       182 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++++|.+.+..|..+..+++|++|++++|.++......+..+++|+.|++++|.+++..+..+..               
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------  244 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------  244 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------
Confidence            55555544444444455555555555555443221122223444555555544444332221110               


Q ss_pred             cccchhhhhCCccccccccccceeee----cccccccCCCCCCeeecccccccccCCcc-ccCCCcCCEEeCcCCccccc
Q 011044          262 GELPANIGNNLPSLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGKIPHE-IGNLRKLEWLMLSHNKLVGV  336 (495)
Q Consensus       262 ~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~l~~n~l~~~  336 (495)
                             ......++.+++.++.+++    .+|..+..+++|+.|++++|+++ .+|.. |..+++|++|++++|++.+.
T Consensus       245 -------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          245 -------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             -------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                   0122334444444444433    35666778888888888888888 44444 57888888888888887653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.9e-29  Score=244.87  Aligned_cols=289  Identities=22%  Similarity=0.215  Sum_probs=179.7

Q ss_pred             EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc
Q 011044           60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM  139 (495)
Q Consensus        60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~  139 (495)
                      .++++++++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.
T Consensus        36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~  111 (353)
T 2z80_A           36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNY  111 (353)
T ss_dssp             EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSC
T ss_pred             eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCc
Confidence            788888887 4555443  57888888888887666667777777777777777775444444433 6666666666666


Q ss_pred             CCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCC-CCCCCChhhhCcccccEEEecCCcCCCcCc
Q 011044          140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNK-LQGEIPEELGNLAELEMLWLQNNSLTGTIP  217 (495)
Q Consensus       140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  217 (495)
                      +++..+..++++++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+++..|
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            664333345666666666666666653222 245555666666666552 333334445555555555555555554444


Q ss_pred             hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccc---cc
Q 011044          218 SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKE---IG  294 (495)
Q Consensus       218 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~  294 (495)
                      ..                        +..+++|++|++++|.+. .++..+...+++|+.|++++|.+++..+..   ..
T Consensus       192 ~~------------------------l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          192 KS------------------------LKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             TT------------------------TTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             HH------------------------HhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence            44                        444455555555555443 333333334555555555555554332222   22


Q ss_pred             CCCCCCeeecccccccc----cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCC
Q 011044          295 NLTKLTDLYLDQNKLQG----KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLP  370 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  370 (495)
                      ....++.++++++.+.+    .+|..+..+++|++|++++|++....+..+..+++|++|++++|++.+.        +|
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~--------~~  318 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS--------CP  318 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC--------HH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc--------CC
Confidence            34667888888887765    4667788999999999999999954443468999999999999998753        45


Q ss_pred             ChhhhhhhhcCCCcc
Q 011044          371 NLEELFLWEYGREGR  385 (495)
Q Consensus       371 ~L~~L~l~~~~~~~~  385 (495)
                      .++.+..|-....++
T Consensus       319 ~l~~l~~~~~~~~~~  333 (353)
T 2z80_A          319 RIDYLSRWLNKNSQK  333 (353)
T ss_dssp             HHHHHHHHHHHTTTT
T ss_pred             CcHHHHHHHHhcccc
Confidence            566666665544443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-31  Score=272.70  Aligned_cols=330  Identities=20%  Similarity=0.180  Sum_probs=242.2

Q ss_pred             CCCeEEEEcCCCCCcccCchh-ccCCCCCCEEeCcCCcCCc----cCCccccCCCCCcEEEccCCcccccCChhHhhcCC
Q 011044           54 SHRVAALNISGLNLTGTIPSE-LANLSSLQALDLSFNWFYG----SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMS  128 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~  128 (495)
                      ++++++|+|+++.+++..... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+...++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            357899999999887654443 7788999999999998874    34666788899999999999887666666666566


Q ss_pred             ----CCCEEEcccccCCc----cCCcccCCCCCCCEEEcccCcCccccCcccc-----CCCCCCEEEccCCCCCCCC---
Q 011044          129 ----NLESLFLKYNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIG-----NLTKLTRLNLRQNKLQGEI---  192 (495)
Q Consensus       129 ----~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---  192 (495)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                69999999998884    4577888899999999999988754444332     2567999999999887643   


Q ss_pred             -ChhhhCcccccEEEecCCcCCCcCchhhh-----cCCCCceeeCCCCcCCCC----CCcccccccccceeeccCccccc
Q 011044          193 -PEELGNLAELEMLWLQNNSLTGTIPSSIF-----SLSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSG  262 (495)
Q Consensus       193 -~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~  262 (495)
                       +..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             45566778999999999888754444443     366899999999988764    35566778889999999988764


Q ss_pred             ccc----hhhhhCCccccccccccceeeec----ccccccCCCCCCeeecccccccccCCcccc-----CCCcCCEEeCc
Q 011044          263 ELP----ANIGNNLPSLQTLSLYVNDFSGA----IPKEIGNLTKLTDLYLDQNKLQGKIPHEIG-----NLRKLEWLMLS  329 (495)
Q Consensus       263 ~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~  329 (495)
                      ...    ..+...+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            432    22222478899999999988753    566677788899999999888754333332     23688999999


Q ss_pred             CCccccc----CCcCccCCCCCcEEEccCCcCceecCCCC----CCCCCChhhhhhhhcCCC
Q 011044          330 HNKLVGV----VPAPIFNLSTLISLQLHNNSLSGSLPSSA----DVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       330 ~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~~~~~  383 (495)
                      +|.+.+.    ++..+..+++|+.|++++|.+.+..+...    ....++|+.|++.+|..+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            9888764    34455677889999999988875432211    122567888888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4e-28  Score=230.35  Aligned_cols=225  Identities=25%  Similarity=0.272  Sum_probs=132.9

Q ss_pred             EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      +.++.++++++. +|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCS
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeCCC
Confidence            455555555552 23222  356666666666666555555666666666666666665444444433 66666666666


Q ss_pred             cc-CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcC
Q 011044          138 NM-FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI  216 (495)
Q Consensus       138 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  216 (495)
                      |. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            65 55444555666666666666666666555555666666666666666666544445666666666666666666444


Q ss_pred             chhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044          217 PSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG  287 (495)
Q Consensus       217 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  287 (495)
                      +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.+..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccC
Confidence            4456666666666666666666656666666666666666666663 333322356666666666666653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.2e-28  Score=234.62  Aligned_cols=269  Identities=25%  Similarity=0.333  Sum_probs=181.6

Q ss_pred             CCCCccccCCCCCC--CCCCccceeeeCCCCCCeEEEEcCCCCCccc----Cchhc--cCCCCCCEEeCcCCcCCccCCc
Q 011044           26 DDPTNFLAKNWNTS--SSFCYWTGVTCDVRSHRVAALNISGLNLTGT----IPSEL--ANLSSLQALDLSFNWFYGSIPS   97 (495)
Q Consensus        26 ~~~~~~l~~~w~~~--~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~L~~n~l~~~~~~   97 (495)
                      .++...+. .|...  .++|.|.+..|.....     .-.-+...|.    .+..+  ...+++++|+|++|.++ .+|.
T Consensus        26 ~~~~~aLl-~~k~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           26 RPYHDVLS-QWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             CCHHHHHH-HHHHHHHHCCTTHHHHHHHHTTT-----CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             chHHHHHH-HHHHhccCCchhhhhhhcccccc-----cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            34444565 77653  4688888776622100     0011222222    11112  24588999999999998 7888


Q ss_pred             cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccC---
Q 011044           98 SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGN---  174 (495)
Q Consensus        98 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---  174 (495)
                      .+.++++|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..   
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred             hhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence            8888999999999999986 88877766 899999999999988 77888999999999999998888788876654   


Q ss_pred             ------CCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCccccccc
Q 011044          175 ------LTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLS  248 (495)
Q Consensus       175 ------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~  248 (495)
                            +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.++
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence                  677777777777776 666667777777777777777763 455566677777777777666666666666666


Q ss_pred             ccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccc
Q 011044          249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN  307 (495)
Q Consensus       249 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  307 (495)
                      +|+.|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..+++|+.+++..+
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            666666666655555555443 4555555555555555555555555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=7.5e-28  Score=228.47  Aligned_cols=239  Identities=19%  Similarity=0.225  Sum_probs=202.2

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      ++++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|...+.++...+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            56899999999999988878899999999999999999988889999999999999999983345544434449999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            99999999877888999999999999999999776777899999999999999998666667999999999999999999


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      +..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+...  -...++.+....+.+....|..+
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~--~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH--HHHHHHHCCSEECCCBEEESGGG
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH--HHHHHHhcccccCccccCCchHh
Confidence            8889999999999999999999998877778999999999999999875443221  12345666666666666666554


Q ss_pred             c
Q 011044          294 G  294 (495)
Q Consensus       294 ~  294 (495)
                      .
T Consensus       269 ~  269 (285)
T 1ozn_A          269 A  269 (285)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1e-27  Score=229.99  Aligned_cols=229  Identities=24%  Similarity=0.241  Sum_probs=130.6

Q ss_pred             CCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccc--cCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044          129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT--IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW  206 (495)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  206 (495)
                      +|++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence            344444444444322222234444444444444444311  1333334444555555554444 2333344455555555


Q ss_pred             ecCCcCCCcCc-hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc-ccchhhhhCCccccccccccce
Q 011044          207 LQNNSLTGTIP-SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG-ELPANIGNNLPSLQTLSLYVND  284 (495)
Q Consensus       207 l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~  284 (495)
                      +++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+. .+++|++|++++|.
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCC
Confidence            55555443322 344555555555555555555555555556666666666666553 2333333 56667777777776


Q ss_pred             eeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCC-CCcEEEccCCcCce
Q 011044          285 FSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQLHNNSLSG  359 (495)
Q Consensus       285 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~  359 (495)
                      +++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+..++ +|+.|++++|++.+
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            6666666677777777777777777766555677777888888888887777777777774 78888888887763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=1.3e-26  Score=233.89  Aligned_cols=280  Identities=27%  Similarity=0.294  Sum_probs=138.7

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +++++|++++|.+++ +|..   +++|++|++++|.+++ ++..   .++|++|++++|.+.+ +| .+. .+++|++|+
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~-~l~~L~~L~  159 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQ-NSSFLKIID  159 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEE
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccC-CCCCCCEEE
Confidence            566677777666665 3432   3556666666665553 2211   1456666666666543 55 232 266666666


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++ +|..+   ++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..   .++|++|++++|.++ 
T Consensus       160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-  228 (454)
T ss_dssp             CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred             CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence            66666553 33322   356666666666654 34 35566666666666666553 2321   135666666666555 


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                      .+| .+..+++|++|++++|.+++. |.   .+++|+.|++++|.+++ +|.    ..++|+.|++++|.+++. +..  
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l-~~~--  295 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGL-SEL--  295 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEE-SCC--
T ss_pred             ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCcc-cCc--
Confidence            344 255566666666666665542 22   12455666666665552 332    124555555555555431 100  


Q ss_pred             CCCCCCeeecccccccccCCccccCC-CcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChh
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNL-RKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLE  373 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  373 (495)
                       .++|+.|++++|++++ ++    .+ ++|++|++++|++.+ +|..   +++|+.|++++|.+. .+|.    .+++|+
T Consensus       296 -~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~  360 (454)
T 1jl5_A          296 -PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLK  360 (454)
T ss_dssp             -CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCC
T ss_pred             -CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhcc
Confidence             1344444444444432 11    11 245555555555443 2221   344555555555544 3333    134445


Q ss_pred             hhhhhhcCCCc
Q 011044          374 ELFLWEYGREG  384 (495)
Q Consensus       374 ~L~l~~~~~~~  384 (495)
                      .|++.+|...+
T Consensus       361 ~L~L~~N~l~~  371 (454)
T 1jl5_A          361 QLHVEYNPLRE  371 (454)
T ss_dssp             EEECCSSCCSS
T ss_pred             EEECCCCCCCc
Confidence            55554444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=7.4e-28  Score=243.00  Aligned_cols=251  Identities=25%  Similarity=0.318  Sum_probs=112.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCC-------------cEEEccCCcccccCCh
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSL-------------LSIYFNNNTLFGELPP  121 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------------~~L~l~~n~~~~~~p~  121 (495)
                      .++++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+.+ +|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            4566677777776 5666667777777777777776666666666665543             666666665532 332


Q ss_pred             hHhhcCCCCCEEEcccccCCccCCccc----------------CCC-CCCCEEEcccCcCccccCccccCCCCCCEEEcc
Q 011044          122 NFCNQMSNLESLFLKYNMFHGKIPSTL----------------SSC-KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLR  184 (495)
Q Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l----------------~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  184 (495)
                      .    .++|++|++++|.+++ +|..+                ..+ ++|++|++++|.+++ +| .++.+++|++|+++
T Consensus        89 ~----~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           89 L----PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             C----CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             C----cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence            1    3455555555555553 33221                001 345555555555443 33 34555555555555


Q ss_pred             CCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccccc
Q 011044          185 QNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGEL  264 (495)
Q Consensus       185 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  264 (495)
                      +|.+++ +|..   ..+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .++|++|++++|.++ .+
T Consensus       162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l  230 (454)
T 1jl5_A          162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL  230 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred             CCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence            555442 2321   1345555555555543 23 34555555555555555543 2211   134555555555554 44


Q ss_pred             chhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccc
Q 011044          265 PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG  335 (495)
Q Consensus       265 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  335 (495)
                      |. +. .+++|++|++++|.+++ +|.   .+++|+.|++++|++.+ +|..   +++|++|++++|++.+
T Consensus       231 p~-~~-~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          231 PE-LQ-NLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CC-CT-TCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             cc-cC-CCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            42 22 45555555555555543 222   12455555555555553 3321   2556666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=7.4e-27  Score=236.41  Aligned_cols=247  Identities=24%  Similarity=0.248  Sum_probs=151.9

Q ss_pred             eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044           57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK  136 (495)
Q Consensus        57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~  136 (495)
                      .+.++.++.+++ .+|..+.  ++|++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+.. +++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC-cccCCEEECC
Confidence            345666666665 3444332  57778888888777777777777777777777777775544444443 7777777777


Q ss_pred             cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCc
Q 011044          137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      +|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.++ ..|.++++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            777775555567777777777777777775555566677777777777644333333 3466666666666666666532


Q ss_pred             CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccC
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN  295 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  295 (495)
                       | .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCCcCCccChHHhcc
Confidence             2 355566666666666666655555566666666666666655533333332 4555555555555555444444555


Q ss_pred             CCCCCeeeccccccc
Q 011044          296 LTKLTDLYLDQNKLQ  310 (495)
Q Consensus       296 l~~L~~L~L~~n~i~  310 (495)
                      +++|+.|++++|++.
T Consensus       289 l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          289 LRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEccCCCcC
Confidence            555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6.4e-27  Score=236.03  Aligned_cols=247  Identities=23%  Similarity=0.228  Sum_probs=143.7

Q ss_pred             CCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc
Q 011044           81 LQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS  160 (495)
Q Consensus        81 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  160 (495)
                      .+.++.++..++ .+|..+.  +++++|++++|.+.+..+..+. .+++|++|++++|.++...+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456666666665 5555443  5667777777776544434443 36667777777776665555666666667777776


Q ss_pred             cCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCc-CCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044          161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS-LTGTIPSSIFSLSSLLNLDLSLNNFTGI  239 (495)
Q Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  239 (495)
                      +|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|. +....+..+.++++|++|++++|.++..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            666665444556666666666666666665445556666666666666633 3322233455666666666666666532


Q ss_pred             CCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccC
Q 011044          240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN  319 (495)
Q Consensus       240 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~  319 (495)
                       | .+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..|..
T Consensus       201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             -C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             -c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence             2 245555666666666655533333333 5555555555555555555555555555555555555555444444555


Q ss_pred             CCcCCEEeCcCCccc
Q 011044          320 LRKLEWLMLSHNKLV  334 (495)
Q Consensus       320 l~~L~~L~l~~n~l~  334 (495)
                      +++|+.|++++|++.
T Consensus       278 l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          278 LHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEcCCCCcc
Confidence            555555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6.3e-27  Score=236.95  Aligned_cols=247  Identities=22%  Similarity=0.220  Sum_probs=138.0

Q ss_pred             CCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc
Q 011044           81 LQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS  160 (495)
Q Consensus        81 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  160 (495)
                      .+.++.++..++ .+|..+.  +++++|++++|.+.+..|..+.. +++|++|++++|.+++..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456666666665 4554433  46666666666665444444433 6666666666666665555666666666666666


Q ss_pred             cCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCC-cCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044          161 SNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN-SLTGTIPSSIFSLSSLLNLDLSLNNFTGI  239 (495)
Q Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  239 (495)
                      +|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..+..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            66666544455666666666666666666444445666666666666653 33222223455566666666666665543


Q ss_pred             CCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccC
Q 011044          240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN  319 (495)
Q Consensus       240 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~  319 (495)
                       | .+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..|..
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             -c-cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence             2 245555555555555555533333333 4555555555555555554555555555555555555555444444455


Q ss_pred             CCcCCEEeCcCCccc
Q 011044          320 LRKLEWLMLSHNKLV  334 (495)
Q Consensus       320 l~~L~~L~l~~n~l~  334 (495)
                      +++|+.|++++|++.
T Consensus       289 l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          289 LRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             ccCCCEEEccCCCcC
Confidence            555555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.1e-29  Score=244.17  Aligned_cols=203  Identities=24%  Similarity=0.263  Sum_probs=101.7

Q ss_pred             CCCCCEEEcccccCCccCCccc--CCCCCCCEEEcccCcCccccCccccCC-----CCCCEEEccCCCCCCCCChhhhCc
Q 011044          127 MSNLESLFLKYNMFHGKIPSTL--SSCKQLRELSLSSNYFSGTIPKEIGNL-----TKLTRLNLRQNKLQGEIPEELGNL  199 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l  199 (495)
                      +++|++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|.+.+..+..++++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4444455555444444444433  4445555555555554433 4444333     455555555555544444445555


Q ss_pred             ccccEEEecCCcCCCc--Cchhh--hcCCCCceeeCCCCcCCCC---CCcccccccccceeeccCcccccccchhhhhCC
Q 011044          200 AELEMLWLQNNSLTGT--IPSSI--FSLSSLLNLDLSLNNFTGI---IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL  272 (495)
Q Consensus       200 ~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l  272 (495)
                      ++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++.   ....+..+++|+.|++++|.+++..|...+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            5555555555544332  12222  4455555555555555421   111223445555555555555543332222234


Q ss_pred             ccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccc
Q 011044          273 PSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG  335 (495)
Q Consensus       273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  335 (495)
                      ++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            55666666666655 4444443  5666667776666643 44 6666777777777776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=4.5e-27  Score=244.51  Aligned_cols=284  Identities=27%  Similarity=0.367  Sum_probs=233.2

Q ss_pred             cccCCCCCCCCCCcccee--------eeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCC
Q 011044           31 FLAKNWNTSSSFCYWTGV--------TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNM  102 (495)
Q Consensus        31 ~l~~~w~~~~~~c~w~gv--------~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  102 (495)
                      ... .|....++|.|.+.        .|.  ...++.|++++++++ .+|..+.  ++|++|++++|.++ .+|.   .+
T Consensus        11 ~w~-~W~~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l   80 (622)
T 3g06_A           11 VWS-AWRRAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP   80 (622)
T ss_dssp             HHH-HHHHTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred             HHH-HHHhcCCcchhccccccCccccccc--CCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence            344 78777788998653        233  246999999999998 6676665  89999999999998 5665   57


Q ss_pred             CCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEE
Q 011044          103 SSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLN  182 (495)
Q Consensus       103 ~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (495)
                      ++|++|++++|.+. .+|.    .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|++|+
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~  147 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS  147 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             CCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence            89999999999985 5666    48999999999999985 454   56899999999999985 5553   48999999


Q ss_pred             ccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc
Q 011044          183 LRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG  262 (495)
Q Consensus       183 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  262 (495)
                      +++|.+++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++. |.   .+++|+.|++++|.++ 
T Consensus       148 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-  214 (622)
T 3g06_A          148 VSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-  214 (622)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-
T ss_pred             CcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-
Confidence            99999985 443   45789999999999985 55   4578999999999999864 33   2478999999999998 


Q ss_pred             ccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCcc
Q 011044          263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIF  342 (495)
Q Consensus       263 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  342 (495)
                      .+|.    .+++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+.
T Consensus       215 ~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~  281 (622)
T 3g06_A          215 SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI  281 (622)
T ss_dssp             SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred             ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence            5553    35789999999999985 44   45689999999999998 4555   6789999999999999 6788899


Q ss_pred             CCCCCcEEEccCCcCceecCC
Q 011044          343 NLSTLISLQLHNNSLSGSLPS  363 (495)
Q Consensus       343 ~l~~L~~L~l~~n~l~~~~~~  363 (495)
                      .+++|+.|++++|++.+..|.
T Consensus       282 ~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          282 HLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GSCTTCEEECCSCCCCHHHHH
T ss_pred             hccccCEEEecCCCCCCcCHH
Confidence            999999999999999865543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=234.32  Aligned_cols=248  Identities=24%  Similarity=0.245  Sum_probs=180.3

Q ss_pred             eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc
Q 011044           57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK  136 (495)
Q Consensus        57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~  136 (495)
                      .+.++..+.+++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+ ..+++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECC
Confidence            345566666665 4454443  677888888888877777778888888888888887754433444 347888888888


Q ss_pred             cccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCc
Q 011044          137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      +|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++ ..|.++++|++|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            888876555567788888888888888876666677788888888888754333433 45777888888888888877 3


Q ss_pred             CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccC
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN  295 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  295 (495)
                      +| .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|+|++|.+++..+..+..
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhcc
Confidence            44 467778888888888888877777788888888888888888754444443 6788888888888887666667777


Q ss_pred             CCCCCeeecccccccc
Q 011044          296 LTKLTDLYLDQNKLQG  311 (495)
Q Consensus       296 l~~L~~L~L~~n~i~~  311 (495)
                      +++|+.|+|++|++..
T Consensus       278 l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             ccCCCEEEcCCCCccC
Confidence            8888888888887654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=6.9e-30  Score=259.55  Aligned_cols=326  Identities=20%  Similarity=0.205  Sum_probs=186.9

Q ss_pred             CCeEEEEcCCCCCcc----cCchhccCCCCCCEEeCcCCcCCccCCcccc-CCC----CCcEEEccCCcccc----cCCh
Q 011044           55 HRVAALNISGLNLTG----TIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMS----SLLSIYFNNNTLFG----ELPP  121 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~----~L~~L~l~~n~~~~----~~p~  121 (495)
                      +++++|+|++|.+++    .++..+..+++|++|++++|.+.+..+..+. .++    +|++|++++|.+.+    .++.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            467777777777664    2345566667777777777766543332222 233    57777777776653    2344


Q ss_pred             hHhhcCCCCCEEEcccccCCccCCccc-----CCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCCC
Q 011044          122 NFCNQMSNLESLFLKYNMFHGKIPSTL-----SSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGEI  192 (495)
Q Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~  192 (495)
                      .+.. +++|++|++++|.+++..+..+     ...++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       108 ~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          108 TLRT-LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HTTS-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHcc-CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            4333 6677777777776654322222     2245677777777766643    2444555677777777777665433


Q ss_pred             Chhhh-----CcccccEEEecCCcCCCc----CchhhhcCCCCceeeCCCCcCCCCC-----CcccccccccceeeccCc
Q 011044          193 PEELG-----NLAELEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGII-----PSSIGNLSSLQKLYLSDN  258 (495)
Q Consensus       193 ~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~~~~L~~L~l~~n  258 (495)
                      +..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            33332     244677777777766642    3555666677777777777665432     111224566777777777


Q ss_pred             ccccc----cchhhhhCCccccccccccceeeecccccccC-----CCCCCeeeccccccccc----CCccccCCCcCCE
Q 011044          259 QLSGE----LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN-----LTKLTDLYLDQNKLQGK----IPHEIGNLRKLEW  325 (495)
Q Consensus       259 ~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~  325 (495)
                      .+++.    ++..+. .+++|++|++++|.+.+..+..+..     .++|+.|++++|.+++.    ++..+..+++|++
T Consensus       267 ~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  345 (461)
T 1z7x_W          267 GITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE  345 (461)
T ss_dssp             CCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred             CCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence            66633    333333 4667777777777665433322221     25677777777766643    3444556677777


Q ss_pred             EeCcCCcccccCCcCccC-----CCCCcEEEccCCcCce----ecCCCCCCCCCChhhhhhhhcCCC
Q 011044          326 LMLSHNKLVGVVPAPIFN-----LSTLISLQLHNNSLSG----SLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       326 L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      |++++|.+.+..+..+..     .++|+.|++++|.+++    .+|.... .+++|++|++.+|..+
T Consensus       346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLG  411 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCC
T ss_pred             EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH-hCCCccEEECCCCCCC
Confidence            777777666543333321     4567777777776664    3333222 3566777776666544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.4e-28  Score=236.58  Aligned_cols=250  Identities=25%  Similarity=0.234  Sum_probs=207.5

Q ss_pred             ccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCC-ccCCcccC-------CCCCCCEEEcccCcCccccCc
Q 011044           99 IFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH-GKIPSTLS-------SCKQLRELSLSSNYFSGTIPK  170 (495)
Q Consensus        99 l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~  170 (495)
                      +...++|++|++++|.+  .+|..+...   |+.|++++|.+. ..++..+.       ++++|++|++++|.+++.+|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34556777888888887  777777653   888888888874 34565554       789999999999999988888


Q ss_pred             cc--cCCCCCCEEEccCCCCCCCCChhhhCc-----ccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC--CC
Q 011044          171 EI--GNLTKLTRLNLRQNKLQGEIPEELGNL-----AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI--IP  241 (495)
Q Consensus       171 ~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~  241 (495)
                      .+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|.+++..+..+..+++|++|++++|.+.+.  .+
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            76  8999999999999999977 8888877     8999999999999988888999999999999999998764  23


Q ss_pred             ccc--ccccccceeeccCccccc--ccchhhhhCCccccccccccceeeeccc-ccccCCCCCCeeecccccccccCCcc
Q 011044          242 SSI--GNLSSLQKLYLSDNQLSG--ELPANIGNNLPSLQTLSLYVNDFSGAIP-KEIGNLTKLTDLYLDQNKLQGKIPHE  316 (495)
Q Consensus       242 ~~l--~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~  316 (495)
                      ..+  +.+++|++|++++|.+++  .++..++..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++ .+|..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~  271 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG  271 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence            333  788999999999999873  3344555578999999999999987664 45667899999999999998 67776


Q ss_pred             ccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCce
Q 011044          317 IGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG  359 (495)
Q Consensus       317 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  359 (495)
                      +.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            65  8999999999999876 55 8899999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=4.4e-28  Score=233.60  Aligned_cols=261  Identities=18%  Similarity=0.166  Sum_probs=173.7

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .+++.++++++.+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+  + ..+++|++|+
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~   86 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLD   86 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E-TTCTTCCEEE
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h-hhcCCCCEEE
Confidence            456666777777766665666777888888888888887766778888888888888888865544  3 3478888888


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++. +    ..++|++|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        87 Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           87 LNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             CcCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            888877632 2    337788888888887755433   35677888888887776666667777778888888777776


Q ss_pred             cCchhhh-cCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          215 TIPSSIF-SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       215 ~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      ..+..+. .+++|++|++++|.+++..  ....+++|++|++++|.++ .++..+. .+++|+.|++++|.++ .+|..+
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHh
Confidence            5555553 5677777777777776542  1234566677777766666 3333333 5566666666666665 344455


Q ss_pred             cCCCCCCeeeccccccc-ccCCccccCCCcCCEEeCcCC
Q 011044          294 GNLTKLTDLYLDQNKLQ-GKIPHEIGNLRKLEWLMLSHN  331 (495)
Q Consensus       294 ~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n  331 (495)
                      ..+++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            55566666666666655 344455555555555555533

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=6.6e-26  Score=213.19  Aligned_cols=217  Identities=27%  Similarity=0.376  Sum_probs=187.5

Q ss_pred             CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044           41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP  120 (495)
Q Consensus        41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  120 (495)
                      +.|.|.|+.|.- ...++.+++++++++. +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+. .+|
T Consensus         3 ~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~   77 (270)
T 2o6q_A            3 ALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP   77 (270)
T ss_dssp             CCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC
T ss_pred             ccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeC
Confidence            679999988854 3467899999999984 565443  68999999999999777778999999999999999985 677


Q ss_pred             hhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcc
Q 011044          121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA  200 (495)
Q Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  200 (495)
                      ..++..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            77666699999999999999976677789999999999999999987777889999999999999999876666788999


Q ss_pred             cccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc
Q 011044          201 ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG  262 (495)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  262 (495)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            99999999999987766778889999999999999988777778888999999999998753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.3e-27  Score=228.55  Aligned_cols=244  Identities=23%  Similarity=0.197  Sum_probs=164.5

Q ss_pred             hHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCccc
Q 011044          122 NFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAE  201 (495)
Q Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  201 (495)
                      .+...+++|++|++++|.+++..|..+.++++|++|++++|.+++..+  +..+++|++|++++|.+++.     ...++
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~  100 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPS  100 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTT
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCC
Confidence            333335566666666666665555566666666666666666654333  56666666666666665521     12366


Q ss_pred             ccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccc
Q 011044          202 LEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY  281 (495)
Q Consensus       202 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  281 (495)
                      |++|++++|.+++..+.   .+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+..+...+++|++|+++
T Consensus       101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            67777777766644332   256677777777777776666677777788888888877755555554467788888888


Q ss_pred             cceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc-ee
Q 011044          282 VNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS-GS  360 (495)
Q Consensus       282 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  360 (495)
                      +|.+++. + ....+++|+.|++++|++++ ++..+..+++|++|++++|++.. +|..+..+++|+.|++++|++. +.
T Consensus       178 ~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          178 YNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             TSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             CCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcC
Confidence            8887654 2 23347888888888888884 44558888888888888888884 5667888888999999998887 44


Q ss_pred             cCCCCCCCCCChhhhhhhhc
Q 011044          361 LPSSADVPLPNLEELFLWEY  380 (495)
Q Consensus       361 ~~~~~~~~l~~L~~L~l~~~  380 (495)
                      +|... ..+++|+.+++..+
T Consensus       254 ~~~~~-~~~~~L~~l~l~~~  272 (317)
T 3o53_A          254 LRDFF-SKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHHHH-HTCHHHHHHHHHHH
T ss_pred             HHHHH-hccccceEEECCCc
Confidence            44332 35777888877643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-26  Score=235.36  Aligned_cols=235  Identities=19%  Similarity=0.166  Sum_probs=144.7

Q ss_pred             CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044           79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS  158 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (495)
                      ++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|  + ..+++|++|++++|.+++. +    ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C-TTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c-ccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence            366666666666665555566666666666666666654443  2 2366666666666666532 1    125666777


Q ss_pred             cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhh-cCCCCceeeCCCCcCC
Q 011044          159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF-SLSSLLNLDLSLNNFT  237 (495)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~  237 (495)
                      +++|.+++..+.   .+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            777666654333   345667777777777666666666677777777777777665565554 5677777777777766


Q ss_pred             CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccccc-ccCCcc
Q 011044          238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ-GKIPHE  316 (495)
Q Consensus       238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~  316 (495)
                      +..+  ...+++|+.|++++|.+++ +|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            5422  2346667777777777663 333333 56667777777766663 4555666667777777777666 344555


Q ss_pred             ccCCCcCCEEeCc
Q 011044          317 IGNLRKLEWLMLS  329 (495)
Q Consensus       317 l~~l~~L~~L~l~  329 (495)
                      +..++.|+.++++
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            6666666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.6e-26  Score=231.48  Aligned_cols=236  Identities=24%  Similarity=0.212  Sum_probs=175.2

Q ss_pred             CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL  207 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  207 (495)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            367777777777776666677777777777777777775544  777777888888777766322     2367888888


Q ss_pred             cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044          208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG  287 (495)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  287 (495)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+...+++|+.|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88877755443   357788888888888877777778888888888888888876676665567888888888888875


Q ss_pred             cccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc-eecCCCCC
Q 011044          288 AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS-GSLPSSAD  366 (495)
Q Consensus       288 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~  366 (495)
                      ..  ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|... 
T Consensus       184 ~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~-  258 (487)
T 3oja_A          184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF-  258 (487)
T ss_dssp             EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH-
T ss_pred             cc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH-
Confidence            52  23457888999999998885 44458888899999999998885 5667888889999999999887 4443332 


Q ss_pred             CCCCChhhhhhh
Q 011044          367 VPLPNLEELFLW  378 (495)
Q Consensus       367 ~~l~~L~~L~l~  378 (495)
                      ..++.|+.+.+.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            346777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.8e-24  Score=201.86  Aligned_cols=205  Identities=24%  Similarity=0.258  Sum_probs=115.4

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +.+++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.. +++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEE
Confidence            34666666666666555555666666666666666666555555666666666666666664433333333 66666666


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccc-cCccccCCCCCCEEEccCCCCCCCCChhhhCccccc----EEEecC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE----MLWLQN  209 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~  209 (495)
                      +++|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+    .|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            666666544444556666666666666665542 355566666666666666666544444454444444    555666


Q ss_pred             CcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044          210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      |.+++..+ ......+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       187 n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          187 NPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            65553322 2223335556666666555544444555555555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.8e-24  Score=201.17  Aligned_cols=162  Identities=25%  Similarity=0.302  Sum_probs=95.4

Q ss_pred             EcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccC
Q 011044           61 NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMF  140 (495)
Q Consensus        61 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l  140 (495)
                      +..+.+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPI   88 (276)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCC
T ss_pred             EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCCCcc
Confidence            33444444 3444332  568888888888876666677777777777777777753333333 3366666666666666


Q ss_pred             CccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC-CChhhhCcccccEEEecCCcCCCcCchh
Q 011044          141 HGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE-IPEELGNLAELEMLWLQNNSLTGTIPSS  219 (495)
Q Consensus       141 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~  219 (495)
                      ++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            655555666666666666666666654444555666666666666655542 3555555555555555555555443334


Q ss_pred             hhcCCCC
Q 011044          220 IFSLSSL  226 (495)
Q Consensus       220 l~~l~~L  226 (495)
                      +..+++|
T Consensus       169 ~~~l~~L  175 (276)
T 2z62_A          169 LRVLHQM  175 (276)
T ss_dssp             GHHHHTC
T ss_pred             hhhhhhc
Confidence            4333333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=3.1e-23  Score=215.68  Aligned_cols=261  Identities=28%  Similarity=0.345  Sum_probs=216.0

Q ss_pred             CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044           79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS  158 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (495)
                      .++++|++++|.++ .+|..+.  ++|++|++++|.+. .+|.    .+++|++|++++|.++ .+|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence            46999999999998 7787665  89999999999985 6666    3899999999999998 4665   679999999


Q ss_pred             cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      +++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            99999985 444   56899999999999985 5543   5899999999999984 443   35789999999999986


Q ss_pred             CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCcccc
Q 011044          239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIG  318 (495)
Q Consensus       239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~  318 (495)
                      . |   ..+++|+.|++++|.++ .+|.    ..++|+.|++++|.++ .++.   .+++|+.|++++|.+++ +|   .
T Consensus       176 l-~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          176 L-P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             C-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred             C-c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---C
Confidence            4 4   45689999999999998 4554    3578999999999997 4443   34889999999999985 55   4


Q ss_pred             CCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCccc
Q 011044          319 NLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREGRV  386 (495)
Q Consensus       319 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  386 (495)
                      .+++|+.|++++|.++. +|.   .+++|+.|++++|++. .+|... ..+++|+.|++.+|...+..
T Consensus       239 ~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l-~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGG-GGSCTTCEEECCSCCCCHHH
T ss_pred             CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHH-hhccccCEEEecCCCCCCcC
Confidence            67899999999999984 554   6789999999999998 777654 46899999999998876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=4.8e-24  Score=200.63  Aligned_cols=224  Identities=23%  Similarity=0.295  Sum_probs=141.9

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccc
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN  138 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n  138 (495)
                      .+++.++.+.+.  ..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+ + ..+. .+++|++|++++|
T Consensus        23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~n   95 (272)
T 3rfs_A           23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALK-ELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGT-TCTTCCEEECTTS
T ss_pred             HHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhc-CCCCCCEEECCCC
Confidence            334444444433  224456666677776666652 2 235666666666666666643 2 2333 3667777777777


Q ss_pred             cCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCch
Q 011044          139 MFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPS  218 (495)
Q Consensus       139 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  218 (495)
                      .+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            76655555566777777777777777655555566777777777777777655555566777777777777777655555


Q ss_pred             hhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCC
Q 011044          219 SIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLT  297 (495)
Q Consensus       219 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  297 (495)
                      .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+        .+++|+.|++..|.++|.+|..++.+.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            56667777777777777776666666677777777777776652        345566666666766666666555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=1.1e-25  Score=218.91  Aligned_cols=234  Identities=21%  Similarity=0.261  Sum_probs=174.7

Q ss_pred             CCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCC--CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCccccc-
Q 011044           42 FCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANL--SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE-  118 (495)
Q Consensus        42 ~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-  118 (495)
                      +..|.++.|+.  ..++.++++++.+.   +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.+. 
T Consensus        36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence            34699988753  56899999999887   4556777  8999999999999877665 66799999999999998655 


Q ss_pred             CChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccC-cCccc-cCccccCCCCCCEEEccCC-CCCCC-CCh
Q 011044          119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN-YFSGT-IPKEIGNLTKLTRLNLRQN-KLQGE-IPE  194 (495)
Q Consensus       119 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~  194 (495)
                      ++..+ ..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus       110 ~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          110 LHGIL-SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHH-TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHH-hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            55444 44899999999999988777888888999999999998 67653 5666778889999999998 77653 466


Q ss_pred             hhhCcc-cccEEEecCC--cCC-CcCchhhhcCCCCceeeCCCCc-CCCCCCcccccccccceeeccCcc-cccccchhh
Q 011044          195 ELGNLA-ELEMLWLQNN--SLT-GTIPSSIFSLSSLLNLDLSLNN-FTGIIPSSIGNLSSLQKLYLSDNQ-LSGELPANI  268 (495)
Q Consensus       195 ~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~  268 (495)
                      .+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            677888 8888888888  444 3456667778888888888887 665566667777777777777774 221111122


Q ss_pred             hhCCccccccccccc
Q 011044          269 GNNLPSLQTLSLYVN  283 (495)
Q Consensus       269 ~~~l~~L~~L~L~~n  283 (495)
                      . .+++|+.|++++|
T Consensus       269 ~-~~~~L~~L~l~~~  282 (336)
T 2ast_B          269 G-EIPTLKTLQVFGI  282 (336)
T ss_dssp             G-GCTTCCEEECTTS
T ss_pred             h-cCCCCCEEeccCc
Confidence            2 3555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.2e-23  Score=194.98  Aligned_cols=203  Identities=22%  Similarity=0.243  Sum_probs=179.0

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++.|+++++.++..  +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+ ++...+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEE
Confidence            6899999999998743  4588999999999999999863  478999999999999999965 4444444599999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            99999997777778999999999999999997777778999999999999999998777778999999999999999998


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhh
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG  269 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  269 (495)
                      ..+..+..+++|+.|++++|.+.+       .+++|+.+++..|.++|.+|..++
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence            878888999999999999998764       356789999999999999998765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=2.8e-26  Score=240.41  Aligned_cols=326  Identities=14%  Similarity=0.105  Sum_probs=182.2

Q ss_pred             CeEEEEcCCCC-Ccc-cCchhccCCCCCCEEeCcCCcCCcc----CCccccCCCCCcEEEccCCcccc----cCChhHhh
Q 011044           56 RVAALNISGLN-LTG-TIPSELANLSSLQALDLSFNWFYGS----IPSSIFNMSSLLSIYFNNNTLFG----ELPPNFCN  125 (495)
Q Consensus        56 ~l~~L~L~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~p~~~~~  125 (495)
                      ++++|+|++|. ++. .++....++++|++|+|++|.+++.    ++..+.++++|++|++++|.+.+    .++.. ..
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~  217 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-AR  217 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-Hh
Confidence            37777777665 221 1222234667777777777766544    22334556777777777776641    22222 23


Q ss_pred             cCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc---------------------------cCcCccccCccccCCCCC
Q 011044          126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS---------------------------SNYFSGTIPKEIGNLTKL  178 (495)
Q Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~---------------------------~n~l~~~~~~~l~~l~~L  178 (495)
                      .+++|++|++++|.+.+ ++..+.++++|++|+++                           ++. ...+|..+..+++|
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQI  295 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGC
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCC
Confidence            36777777777766553 44445555555555554                           321 12344445555666


Q ss_pred             CEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCC-----------CcCCCC-CCcccc
Q 011044          179 TRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL-----------NNFTGI-IPSSIG  245 (495)
Q Consensus       179 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~-~~~~l~  245 (495)
                      ++|++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++           +.+++. ++....
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~  375 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ  375 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence            666666665443222 2245566666666662221122233334566677777762           333322 111123


Q ss_pred             cccccceeeccCcccccccchhhhhCCccccccccc----cceeeec-----ccccccCCCCCCeeeccccc--ccccCC
Q 011044          246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY----VNDFSGA-----IPKEIGNLTKLTDLYLDQNK--LQGKIP  314 (495)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--i~~~~~  314 (495)
                      .+++|++|+++.+.+++..+..+...+++|+.|+++    .|.+++.     ++..+..+++|+.|++++|.  +++...
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            466777777766666665555555456777777775    3445432     23335567777777776433  444333


Q ss_pred             cccc-CCCcCCEEeCcCCccccc-CCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCCc
Q 011044          315 HEIG-NLRKLEWLMLSHNKLVGV-VPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGREG  384 (495)
Q Consensus       315 ~~l~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  384 (495)
                      ..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++.........+++|++|++++|..+.
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            3333 477788888888877652 233345678888888888887543222222346788888887776443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.1e-23  Score=192.46  Aligned_cols=204  Identities=24%  Similarity=0.277  Sum_probs=176.3

Q ss_pred             CCCCCCCCC--ccceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCC
Q 011044           35 NWNTSSSFC--YWTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMS  103 (495)
Q Consensus        35 ~w~~~~~~c--~w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  103 (495)
                      .|....+.|  .|..+.|...         ++.+++|+|++|.+++..+..|.++++|++|++++|.++...+..|.+++
T Consensus         6 ~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~   85 (270)
T 2o6q_A            6 KKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK   85 (270)
T ss_dssp             GGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred             CCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence            676655555  4677888542         45799999999999988777899999999999999999866666678999


Q ss_pred             CCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEc
Q 011044          104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL  183 (495)
Q Consensus       104 ~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  183 (495)
                      +|++|++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        86 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           86 NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            9999999999996 555555555999999999999999877888999999999999999999766667899999999999


Q ss_pred             cCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044          184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI  239 (495)
Q Consensus       184 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  239 (495)
                      ++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            99999977777799999999999999999976666788999999999999987643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=6.5e-23  Score=190.52  Aligned_cols=191  Identities=23%  Similarity=0.255  Sum_probs=134.2

Q ss_pred             CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044           41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP  120 (495)
Q Consensus        41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  120 (495)
                      .+|.|.|.+|..   ..++++++++.++ .+|..+.  ++|++|+|++|.+.+..+..+.++++|++|++++|.+.+..+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            467899999953   5678999999998 5555554  689999999999988877788888888888888888865444


Q ss_pred             hhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcc
Q 011044          121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA  200 (495)
Q Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  200 (495)
                      ..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus        77 ~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           77 GVFD-DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hHhc-cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            4343 377777777777777765556667777777777777777755555566667777777777766655554566666


Q ss_pred             cccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          201 ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      +|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            66666666666665544455556666666666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.3e-22  Score=192.41  Aligned_cols=175  Identities=25%  Similarity=0.256  Sum_probs=78.3

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      +++.+++++++++ .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.+.+. +..  ..+++|++|++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD--GTLPVLGTLDL   84 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC--SCCTTCCEEEC
T ss_pred             CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC--CCCCcCCEEEC
Confidence            4555555555554 2333222  4555555555555544444555555555555555554322 111  22444455555


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      ++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.++..
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            444444 3344444444444444444444433333444444444444444444433333334444444444444444432


Q ss_pred             CchhhhcCCCCceeeCCCCcCC
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      .+..+..+++|++|++++|.++
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC
T ss_pred             CHHHhcCcCCCCEEECCCCcCC
Confidence            2223333444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.1e-24  Score=215.89  Aligned_cols=245  Identities=20%  Similarity=0.228  Sum_probs=135.3

Q ss_pred             cCchhccCCCCCCEEeCcCCcCCccCC----ccccCCCCCcEEEccCC---cccccCChhHh------hcCCCCCEEEcc
Q 011044           70 TIPSELANLSSLQALDLSFNWFYGSIP----SSIFNMSSLLSIYFNNN---TLFGELPPNFC------NQMSNLESLFLK  136 (495)
Q Consensus        70 ~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n---~~~~~~p~~~~------~~l~~L~~L~l~  136 (495)
                      .++..+..+++|++|+|++|.+++..+    ..+..+++|++|++++|   .+.+.+|..+.      ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            355667778888888888888876533    34667888888888875   33445555542      235666666666


Q ss_pred             cccCCc----cCCcccCCCCCCCEEEcccCcCccccCcccc----CC---------CCCCEEEccCCCCC-CCCC---hh
Q 011044          137 YNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIG----NL---------TKLTRLNLRQNKLQ-GEIP---EE  195 (495)
Q Consensus       137 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~---~~  195 (495)
                      +|.+++    .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|.++ +.++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            666554    2444555555666666666655432222222    22         45555555555544 1222   23


Q ss_pred             hhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC---CCCcccccccccceeeccCcccc----cccchhh
Q 011044          196 LGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG---IIPSSIGNLSSLQKLYLSDNQLS----GELPANI  268 (495)
Q Consensus       196 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~  268 (495)
                      +..+++|++|++++|.++..                      +   ..+..+..+++|+.|++++|.++    ..++..+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPE----------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHH----------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             HHhCCCcCEEECcCCCCCHh----------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            33444444444444444310                      1   12223444555555555555543    2333333


Q ss_pred             hhCCccccccccccceeeec----ccccc--cCCCCCCeeecccccccc----cCCccc-cCCCcCCEEeCcCCcccccC
Q 011044          269 GNNLPSLQTLSLYVNDFSGA----IPKEI--GNLTKLTDLYLDQNKLQG----KIPHEI-GNLRKLEWLMLSHNKLVGVV  337 (495)
Q Consensus       269 ~~~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~  337 (495)
                      . .+++|++|++++|.+++.    ++..+  ..+++|+.|+|++|.+++    .++..+ .++++|++|++++|++.+..
T Consensus       241 ~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          241 K-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             G-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             c-cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            3 455566666666655443    33444  236777777777777775    355555 45777888888888777544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.9e-22  Score=191.29  Aligned_cols=179  Identities=22%  Similarity=0.264  Sum_probs=85.7

Q ss_pred             ccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCC
Q 011044           75 LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQL  154 (495)
Q Consensus        75 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  154 (495)
                      +++++++++++++++.++ .+|..+.  +++++|++++|.+.+..+..+.. +++|++|++++|.+++. +. ...+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~-~~-~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKL-QV-DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence            556666777777766665 4444332  45566666666654333333333 55555555555555432 11 1444555


Q ss_pred             CEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      ++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            55555555554 34444444455555555555544433344444444444444444444333333344444444444444


Q ss_pred             cCCCCCCcccccccccceeeccCccc
Q 011044          235 NFTGIIPSSIGNLSSLQKLYLSDNQL  260 (495)
Q Consensus       235 ~l~~~~~~~l~~~~~L~~L~l~~n~l  260 (495)
                      ++++..+..+..+++|+.|++++|.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcC
Confidence            44433333333344444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.8e-24  Score=210.94  Aligned_cols=258  Identities=22%  Similarity=0.215  Sum_probs=146.7

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCC----ccccCCC-CCcEEEccCCcccccCChhHhhc----CCC
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIP----SSIFNMS-SLLSIYFNNNTLFGELPPNFCNQ----MSN  129 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~~----l~~  129 (495)
                      .++++++.+++.+|..+...++|++|+|++|.+++..+    ..+.+++ +|++|++++|.+.+..+..+...    .++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35678888888887777777778888888888876655    5677777 78888888888866655555441    277


Q ss_pred             CCEEEcccccCCccCCcc----cCCC-CCCCEEEcccCcCccccCcccc----C-CCCCCEEEccCCCCCCCCCh----h
Q 011044          130 LESLFLKYNMFHGKIPST----LSSC-KQLRELSLSSNYFSGTIPKEIG----N-LTKLTRLNLRQNKLQGEIPE----E  195 (495)
Q Consensus       130 L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~~~----~  195 (495)
                      |++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++..+.    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            777777777776554443    3333 6777777777776654443332    2 24667777776666543322    2


Q ss_pred             hhCcc-cccEEEecCCcCCCcCchhhh----cC-CCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhh
Q 011044          196 LGNLA-ELEMLWLQNNSLTGTIPSSIF----SL-SSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIG  269 (495)
Q Consensus       196 l~~l~-~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  269 (495)
                      +..++ +|++|++++|.+++..+..+.    .+ ++|++|++++|.+++.....                    ++..+.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--------------------l~~~l~  221 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--------------------LAYIFS  221 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--------------------HHHHHH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH--------------------HHHHHh
Confidence            23333 566666666666544433222    23 35555555555554321111                    122222


Q ss_pred             hCCccccccccccceeeeccc----ccccCCCCCCeeecccccccc-------cCCccccCCCcCCEEeCcCCccccc
Q 011044          270 NNLPSLQTLSLYVNDFSGAIP----KEIGNLTKLTDLYLDQNKLQG-------KIPHEIGNLRKLEWLMLSHNKLVGV  336 (495)
Q Consensus       270 ~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~-------~~~~~l~~l~~L~~L~l~~n~l~~~  336 (495)
                      ...++|++|++++|.+++..+    ..+..+++|+.|++++|.+.+       .++..+..+++|+.|++++|++.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            112344455555544443222    223444556666666665332       1223455666677777777766554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.4e-24  Score=210.39  Aligned_cols=257  Identities=18%  Similarity=0.172  Sum_probs=142.0

Q ss_pred             EeCcCCcCCccCCccccCCCCCcEEEccCCcccccCCh---hHhhcCC-CCCEEEcccccCCccCCcccCCC-----CCC
Q 011044           84 LDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPP---NFCNQMS-NLESLFLKYNMFHGKIPSTLSSC-----KQL  154 (495)
Q Consensus        84 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~---~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L  154 (495)
                      +.++.|.+++.+|..+...++|++|++++|.+.+..+.   ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45566666655555544455566666666665433321   1112244 55555555555554433333332     445


Q ss_pred             CEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCc-ccccEEEecCCcCCCcCchhhh----c-CCCCce
Q 011044          155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNL-AELEMLWLQNNSLTGTIPSSIF----S-LSSLLN  228 (495)
Q Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~  228 (495)
                      ++|++++|.+++..+..+...                    +..+ ++|++|++++|.+++..+..+.    . .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence            555555544443333222111                    1222 4455555555554433332222    2 235555


Q ss_pred             eeCCCCcCCCCCCc----cccccc-ccceeeccCcccccccchhhh---hCC-ccccccccccceeeec----ccccccC
Q 011044          229 LDLSLNNFTGIIPS----SIGNLS-SLQKLYLSDNQLSGELPANIG---NNL-PSLQTLSLYVNDFSGA----IPKEIGN  295 (495)
Q Consensus       229 L~Ls~n~l~~~~~~----~l~~~~-~L~~L~l~~n~l~~~~~~~~~---~~l-~~L~~L~L~~n~l~~~----~~~~l~~  295 (495)
                      |++++|.+++..+.    .+..++ +|++|++++|.+++..+..+.   ..+ ++|++|++++|.+++.    ++..+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            55555555533222    222333 666666666666544433222   133 4777777777777642    3444544


Q ss_pred             -CCCCCeeecccccccccCC----ccccCCCcCCEEeCcCCccccc-------CCcCccCCCCCcEEEccCCcCcee
Q 011044          296 -LTKLTDLYLDQNKLQGKIP----HEIGNLRKLEWLMLSHNKLVGV-------VPAPIFNLSTLISLQLHNNSLSGS  360 (495)
Q Consensus       296 -l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~  360 (495)
                       .++|+.|++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.|++++|++.+.
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence             4599999999999986443    3457789999999999984432       334667889999999999998754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.2e-24  Score=215.53  Aligned_cols=234  Identities=20%  Similarity=0.245  Sum_probs=167.0

Q ss_pred             CCCCCEEEcccccCCcc----CCcccCCCCCCCEEEcccC---cCccccCccc-------cCCCCCCEEEccCCCCCC--
Q 011044          127 MSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSN---YFSGTIPKEI-------GNLTKLTRLNLRQNKLQG--  190 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n---~l~~~~~~~l-------~~l~~L~~L~L~~n~l~~--  190 (495)
                      +++|++|++++|.++..    ++..+..+++|++|++++|   .+++.+|..+       ..+++|++|++++|.+.+  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            55555555555555443    2223555666666666664   3333444433       567777888888777775  


Q ss_pred             --CCChhhhCcccccEEEecCCcCCCcCchh----hhcC---------CCCceeeCCCCcCCC-CCC---cccccccccc
Q 011044          191 --EIPEELGNLAELEMLWLQNNSLTGTIPSS----IFSL---------SSLLNLDLSLNNFTG-IIP---SSIGNLSSLQ  251 (495)
Q Consensus       191 --~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~Ls~n~l~~-~~~---~~l~~~~~L~  251 (495)
                        .++..+..+++|++|++++|.++...+..    +..+         ++|++|++++|.++. .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              35566777788888888888776433333    3333         889999999998873 333   3566788999


Q ss_pred             eeeccCcccccc-----cchhhhhCCccccccccccceee----ecccccccCCCCCCeeeccccccccc----CCccc-
Q 011044          252 KLYLSDNQLSGE-----LPANIGNNLPSLQTLSLYVNDFS----GAIPKEIGNLTKLTDLYLDQNKLQGK----IPHEI-  317 (495)
Q Consensus       252 ~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l-  317 (495)
                      +|++++|.++..     .+..+. .+++|+.|+|++|.++    ..++..+..+++|+.|+|++|.+++.    ++..+ 
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            999999988732     221333 7899999999999996    56778889999999999999999864    45556 


Q ss_pred             -cCCCcCCEEeCcCCcccc----cCCcCc-cCCCCCcEEEccCCcCceec
Q 011044          318 -GNLRKLEWLMLSHNKLVG----VVPAPI-FNLSTLISLQLHNNSLSGSL  361 (495)
Q Consensus       318 -~~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~  361 (495)
                       +.+++|++|++++|.+.+    .+|..+ .++++|++|++++|++++..
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             348999999999999997    466666 56899999999999998543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=9e-24  Score=205.23  Aligned_cols=251  Identities=18%  Similarity=0.207  Sum_probs=162.4

Q ss_pred             CcEEEccCCcccccCChhHhhcC--CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccc-cCccccCCCCCCEE
Q 011044          105 LLSIYFNNNTLFGELPPNFCNQM--SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGT-IPKEIGNLTKLTRL  181 (495)
Q Consensus       105 L~~L~l~~n~~~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L  181 (495)
                      ++.++++++.+.   +..+.. +  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            556666665553   222222 4  6677777777776654443 44667777777777776644 56666677777777


Q ss_pred             EccCCCCCCCCChhhhCcccccEEEecCC-cCCCc-CchhhhcCCCCceeeCCCC-cCCCC-CCccccccc-ccceeecc
Q 011044          182 NLRQNKLQGEIPEELGNLAELEMLWLQNN-SLTGT-IPSSIFSLSSLLNLDLSLN-NFTGI-IPSSIGNLS-SLQKLYLS  256 (495)
Q Consensus       182 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~~~-~L~~L~l~  256 (495)
                      ++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77777776666666777777777777777 45542 4555667777777777777 66643 345566677 77788887


Q ss_pred             Cc--ccc-cccchhhhhCCccccccccccce-eeecccccccCCCCCCeeeccccc-ccccCCccccCCCcCCEEeCcCC
Q 011044          257 DN--QLS-GELPANIGNNLPSLQTLSLYVND-FSGAIPKEIGNLTKLTDLYLDQNK-LQGKIPHEIGNLRKLEWLMLSHN  331 (495)
Q Consensus       257 ~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n  331 (495)
                      +|  .++ +.++..+. .+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            77  344 23344333 67788888888887 666666677778888888888884 33322235677888888888888


Q ss_pred             cccccCCcCccCC-CCCcEEEccCCcCceecCCCC
Q 011044          332 KLVGVVPAPIFNL-STLISLQLHNNSLSGSLPSSA  365 (495)
Q Consensus       332 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~  365 (495)
                       +...   .+..+ ..+..|++++|++++..|...
T Consensus       283 -i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 -VPDG---TLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             -cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence             3321   23333 236666678888887666544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=2.6e-25  Score=233.02  Aligned_cols=328  Identities=14%  Similarity=0.107  Sum_probs=203.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccC-CCC-CCEEeCcCCc-CCc-cCCccccCCCCCcEEEccCCcccccCC---hhHhhcC
Q 011044           55 HRVAALNISGLNLTGTIPSELAN-LSS-LQALDLSFNW-FYG-SIPSSIFNMSSLLSIYFNNNTLFGELP---PNFCNQM  127 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~-l~~-L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p---~~~~~~l  127 (495)
                      +++++|+|+++.+++..+..+.. ++. |++|+|++|. ++. .++....++++|++|++++|.+.+.-.   ..+...+
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            68999999999998877777766 445 9999999986 221 122334578999999999999865532   2244459


Q ss_pred             CCCCEEEcccccCCc----cCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC--------------
Q 011044          128 SNLESLFLKYNMFHG----KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ--------------  189 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--------------  189 (495)
                      ++|++|++++|.+++    .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....              
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            999999999999872    345556788999999999998875 5667777788888887643211              


Q ss_pred             ------------CCCChhhhCcccccEEEecCCcCCCcCc-hhhhcCCCCceeeCCCCcCCCCCCcccccccccceeecc
Q 011044          190 ------------GEIPEELGNLAELEMLWLQNNSLTGTIP-SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLS  256 (495)
Q Consensus       190 ------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~  256 (495)
                                  ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|+++
T Consensus       271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence                        1233334445555555555555442222 223455555555555221111122222445666666666


Q ss_pred             C-----------cccccccchhhhhCCccccccccccceeeecccccccC-CCCCCeeecc----ccccccc-----CCc
Q 011044          257 D-----------NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN-LTKLTDLYLD----QNKLQGK-----IPH  315 (495)
Q Consensus       257 ~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~i~~~-----~~~  315 (495)
                      +           +.+++.....+...+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     ++.
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            2           34443323333335667777777666666554444444 6677777775    4455532     222


Q ss_pred             cccCCCcCCEEeCcCCc--ccccCCcCcc-CCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          316 EIGNLRKLEWLMLSHNK--LVGVVPAPIF-NLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       316 ~l~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      .+..+++|++|++++|.  +.+..+..+. .+++|+.|++++|++++.........+++|+.|++.+|..+
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            35567777777776543  4443333333 36778888888888764322222235678888888877743

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.5e-22  Score=185.21  Aligned_cols=196  Identities=19%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc-ccccCChhHhhcCCCCCEEEccc-ccCCccCCcccCCCCCCCEE
Q 011044           80 SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT-LFGELPPNFCNQMSNLESLFLKY-NMFHGKIPSTLSSCKQLREL  157 (495)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L  157 (495)
                      +|++|++++|.+++..+..+.++++|++|++++|. + +.++...+..+++|++|++++ |.++...+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            56666666666665555566666666666666665 4 344443333466677777766 66665445566666777777


Q ss_pred             EcccCcCccccCccccCCCCCC---EEEccCC-CCCCCCChhhhCccccc-EEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044          158 SLSSNYFSGTIPKEIGNLTKLT---RLNLRQN-KLQGEIPEELGNLAELE-MLWLQNNSLTGTIPSSIFSLSSLLNLDLS  232 (495)
Q Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  232 (495)
                      ++++|.+++ +|. +..+++|+   +|++++| .+.+..+..|.++++|+ +|++++|.++ .+|......++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            777776664 444 66666666   7777777 66644445566677777 7777777766 444433333667777777


Q ss_pred             CCc-CCCCCCcccccc-cccceeeccCcccccccchhhhhCCccccccccccc
Q 011044          233 LNN-FTGIIPSSIGNL-SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN  283 (495)
Q Consensus       233 ~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n  283 (495)
                      +|. +++..+..+..+ ++|+.|++++|.++ .+|..   .+++|+.|++.++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence            774 665555666666 77777777777776 44443   3566666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=7.7e-23  Score=196.27  Aligned_cols=226  Identities=21%  Similarity=0.209  Sum_probs=160.9

Q ss_pred             CCCCEEeCcCCcCCccCCc---cccCCCCCcEEEccCCcccccCChhHh-hcCCCCCEEEcccccCCccCC----cccCC
Q 011044           79 SSLQALDLSFNWFYGSIPS---SIFNMSSLLSIYFNNNTLFGELPPNFC-NQMSNLESLFLKYNMFHGKIP----STLSS  150 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~p~~~~-~~l~~L~~L~l~~n~l~~~~~----~~l~~  150 (495)
                      ..++.|.+.++.+......   .+..+++|++|++++|.+.+..|..+. ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3467777777666432111   122345688888888887777776663 447788888888888776444    33456


Q ss_pred             CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC--C--ChhhhCcccccEEEecCCcCCCcCch----hhhc
Q 011044          151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE--I--PEELGNLAELEMLWLQNNSLTGTIPS----SIFS  222 (495)
Q Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~  222 (495)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  +  +..+..+++|++|++++|.++. ++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            77888888888888777777778888888888888876532  1  1223577888888888888862 222    2467


Q ss_pred             CCCCceeeCCCCcCCCCCCcccccc---cccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCC
Q 011044          223 LSSLLNLDLSLNNFTGIIPSSIGNL---SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL  299 (495)
Q Consensus       223 l~~L~~L~Ls~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  299 (495)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|.++ .+|..+.   ++|+.|++++|.+++. |. +..+++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            7888888888888887767666665   58888888888888 6776543   6888999999988753 32 5778899


Q ss_pred             Ceeecccccccc
Q 011044          300 TDLYLDQNKLQG  311 (495)
Q Consensus       300 ~~L~L~~n~i~~  311 (495)
                      +.|++++|++++
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999998874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=195.07  Aligned_cols=229  Identities=18%  Similarity=0.170  Sum_probs=134.5

Q ss_pred             CCCCcEEEccCCcccccCChhHh--hcCCCCCEEEcccccCCccCCccc--CCCCCCCEEEcccCcCccccC----cccc
Q 011044          102 MSSLLSIYFNNNTLFGELPPNFC--NQMSNLESLFLKYNMFHGKIPSTL--SSCKQLRELSLSSNYFSGTIP----KEIG  173 (495)
Q Consensus       102 l~~L~~L~l~~n~~~~~~p~~~~--~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~  173 (495)
                      ...++.+.+.++.+....-..+.  ..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34577788877766432111111  114567777777777776666666  667777777777777665433    2233


Q ss_pred             CCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc--CchhhhcCCCCceeeCCCCcCCCCCCcccccccccc
Q 011044          174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT--IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQ  251 (495)
Q Consensus       174 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~  251 (495)
                      .+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  ++.                      +..++.+++|+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~  200 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQ  200 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----------------------HHhhhcCCCCC
Confidence            456666666666666555555555566666666666554321  100                      11123445555


Q ss_pred             eeeccCcccccccch---hhhhCCccccccccccceeeecccccccCC---CCCCeeecccccccccCCccccCCCcCCE
Q 011044          252 KLYLSDNQLSGELPA---NIGNNLPSLQTLSLYVNDFSGAIPKEIGNL---TKLTDLYLDQNKLQGKIPHEIGNLRKLEW  325 (495)
Q Consensus       252 ~L~l~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  325 (495)
                      +|++++|.++ .++.   .+...+++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|++
T Consensus       201 ~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~  276 (310)
T 4glp_A          201 NLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV  276 (310)
T ss_dssp             SCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred             EEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence            5555555554 2221   122355667777777777666555555554   57777777777777 5555543  67777


Q ss_pred             EeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          326 LMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       326 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      |++++|++.+. |. +..+++|+.|++++|+++
T Consensus       277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            77777777753 32 566777778888877775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=6.7e-25  Score=230.03  Aligned_cols=326  Identities=15%  Similarity=0.152  Sum_probs=167.6

Q ss_pred             CCeEEEEcCCCCCcccCchhcc-CCCCCCEEeCcCC-cCCcc-CCccccCCCCCcEEEccCCcccccCChhH---hhcCC
Q 011044           55 HRVAALNISGLNLTGTIPSELA-NLSSLQALDLSFN-WFYGS-IPSSIFNMSSLLSIYFNNNTLFGELPPNF---CNQMS  128 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---~~~l~  128 (495)
                      +++++|+|+++.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+.+..+..+   ...++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5788888888888776666665 5778888888877 44432 33334467778888888777654433322   22356


Q ss_pred             CCCEEEccccc--CCcc-CCcccCCCCCCCEEEcccCcCccccCccccCC------------------------------
Q 011044          129 NLESLFLKYNM--FHGK-IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNL------------------------------  175 (495)
Q Consensus       129 ~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------------------------------  175 (495)
                      +|++|++++|.  +... +...+.++++|++|++++|...+.++..+..+                              
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            77777777765  2211 11122345667777776652111133333333                              


Q ss_pred             ------------------------CCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCc-CchhhhcCCCCcee
Q 011044          176 ------------------------TKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGT-IPSSIFSLSSLLNL  229 (495)
Q Consensus       176 ------------------------~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L  229 (495)
                                              ++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence                                    444444444444332111 11234444444444444 2211 11111234555555


Q ss_pred             eCCC---------CcCCCCCCccc-ccccccceeeccCcccccccchhhhhCCccccccccc--c----ceeee-----c
Q 011044          230 DLSL---------NNFTGIIPSSI-GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY--V----NDFSG-----A  288 (495)
Q Consensus       230 ~Ls~---------n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~--~----n~l~~-----~  288 (495)
                      ++.+         +.+++.....+ ..+++|+.|.+..+.+++.....+...+++|+.|+++  +    +.+++     .
T Consensus       344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~  423 (594)
T 2p1m_B          344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG  423 (594)
T ss_dssp             EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred             EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence            5422         12221111111 1245556665555555544444444345666666666  2    22321     1


Q ss_pred             ccccccCCCCCCeeecccccccccCCccccC-CCcCCEEeCcCCcccccCCcCc-cCCCCCcEEEccCCcCceecCCCCC
Q 011044          289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGN-LRKLEWLMLSHNKLVGVVPAPI-FNLSTLISLQLHNNSLSGSLPSSAD  366 (495)
Q Consensus       289 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~  366 (495)
                      ++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.......
T Consensus       424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~  502 (594)
T 2p1m_B          424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA  502 (594)
T ss_dssp             HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred             HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence            112244556666666655 444433333333 6677777777777655443333 4567777777777777543332233


Q ss_pred             CCCCChhhhhhhhcCC
Q 011044          367 VPLPNLEELFLWEYGR  382 (495)
Q Consensus       367 ~~l~~L~~L~l~~~~~  382 (495)
                      ..+++|+.|++++|..
T Consensus       503 ~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          503 SKLETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGGGSSEEEEESSCC
T ss_pred             HhCCCCCEEeeeCCCC
Confidence            3467777777777755

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8.9e-22  Score=181.44  Aligned_cols=196  Identities=19%  Similarity=0.234  Sum_probs=93.5

Q ss_pred             CCCEEEcccccCCccCCcccCCCCCCCEEEcccCc-CccccCccccCCCCCCEEEccC-CCCCCCCChhhhCcccccEEE
Q 011044          129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNY-FSGTIPKEIGNLTKLTRLNLRQ-NKLQGEIPEELGNLAELEMLW  206 (495)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~  206 (495)
                      +|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444444443333344444444455544443 4433333444445555555544 444433333444455555555


Q ss_pred             ecCCcCCCcCchhhhcCCCCc---eeeCCCC-cCCCCCCcccccccccc-eeeccCcccccccchhhhhCCccccccccc
Q 011044          207 LQNNSLTGTIPSSIFSLSSLL---NLDLSLN-NFTGIIPSSIGNLSSLQ-KLYLSDNQLSGELPANIGNNLPSLQTLSLY  281 (495)
Q Consensus       207 l~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  281 (495)
                      +++|.+++ +|. +..+++|+   +|++++| .+++..+..+..+++|+ .|++++|.++ .+|...+.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            55554443 332 44444444   5555555 45444444455555555 5555555555 444433322 455555555


Q ss_pred             cce-eeecccccccCC-CCCCeeecccccccccCCccccCCCcCCEEeCcCC
Q 011044          282 VND-FSGAIPKEIGNL-TKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHN  331 (495)
Q Consensus       282 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  331 (495)
                      +|. +++..+..+..+ ++|+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            553 544444445555 555555555555552 2222  3445555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8e-21  Score=176.37  Aligned_cols=181  Identities=23%  Similarity=0.267  Sum_probs=148.3

Q ss_pred             CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044           79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS  158 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (495)
                      ...++++++++.++ .+|..+.  +++++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC-cccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            35678899988887 6666554  58899999999987655555544 88999999999998877777788889999999


Q ss_pred             cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            99998887767778888899999999998886666667888899999999998886666678888899999999998888


Q ss_pred             CCCcccccccccceeeccCcccccc
Q 011044          239 IIPSSIGNLSSLQKLYLSDNQLSGE  263 (495)
Q Consensus       239 ~~~~~l~~~~~L~~L~l~~n~l~~~  263 (495)
                      ..+..+..+++|+.|++++|.+...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7777788888888889888888644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=8.8e-21  Score=181.55  Aligned_cols=188  Identities=22%  Similarity=0.364  Sum_probs=84.3

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      ++++|+++++.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++ .+.. +++|++|++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~L~l  114 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAG-LQSIKTLDL  114 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTT-CTTCCEEEC
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcC-CCCCCEEEC
Confidence            45555555555543 22 35555555555555555543222  5555555555555555432 22 2222 455555555


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      ++|.+++ ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus       115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence            5555443 22 14444555555555554443211  44444444444444444422 11 44444444444444444422


Q ss_pred             CchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccc
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL  260 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l  260 (495)
                      .+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence            11  3444444444444444443321  33344444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=3.3e-21  Score=173.60  Aligned_cols=187  Identities=25%  Similarity=0.364  Sum_probs=134.2

Q ss_pred             CCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccC
Q 011044           40 SSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL  119 (495)
Q Consensus        40 ~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  119 (495)
                      .+.|.|.++.|..            ++++ .+|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+. .+
T Consensus         4 ~C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~   67 (208)
T 2o6s_A            4 RCSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SL   67 (208)
T ss_dssp             TCEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred             CCEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-cc
Confidence            3568899998864            2232 222222  457788888888777655566777788888888888775 44


Q ss_pred             ChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCc
Q 011044          120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNL  199 (495)
Q Consensus       120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  199 (495)
                      |...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus        68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l  147 (208)
T 2o6s_A           68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  147 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence            55444447888888888888876555567788888888888888876666667778888888888888876656567788


Q ss_pred             ccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccc
Q 011044          200 AELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSS  249 (495)
Q Consensus       200 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~  249 (495)
                      ++|+.|++++|.+.+       .+++|+.|+++.|.++|.+|..++.++.
T Consensus       148 ~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          148 TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            888888888886653       3567888888888888888877766544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=3.3e-21  Score=188.05  Aligned_cols=246  Identities=20%  Similarity=0.241  Sum_probs=171.5

Q ss_pred             CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044           41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP  120 (495)
Q Consensus        41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  120 (495)
                      +.|.|+.|.|.            +++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.+|
T Consensus         7 C~C~~~~v~C~------------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~   71 (350)
T 4ay9_X            7 CHCSNRVFLCQ------------ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE   71 (350)
T ss_dssp             SEEETTEEEEE------------STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred             cEeeCCEEEec------------CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence            34666666664            45555 455545  3689999999999986555678999999999999999888888


Q ss_pred             hhHhhcCCCCCE-EEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCC-CCCCCCChhhhC
Q 011044          121 PNFCNQMSNLES-LFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN-KLQGEIPEELGN  198 (495)
Q Consensus       121 ~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~  198 (495)
                      ...+..++++++ +.+..|+++...|..|..+++|++|++++|.+....+..+....++..|++.++ .+....+..|..
T Consensus        72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~  151 (350)
T 4ay9_X           72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG  151 (350)
T ss_dssp             TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred             hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence            877766888775 556678888777888899999999999999888665555666677788888654 455333445555


Q ss_pred             cc-cccEEEecCCcCCCcCchhhhcCCCCceeeCCC-CcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccc
Q 011044          199 LA-ELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL-NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ  276 (495)
Q Consensus       199 l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  276 (495)
                      +. .++.|++++|.++ .++.......+|+++++++ |.++...+..|+.+++|+.|++++|+++ .+|...+..+++|+
T Consensus       152 ~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  229 (350)
T ss_dssp             SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             cchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhh
Confidence            54 5788888888887 4555555667788888875 5555555556778888888888888887 56654333344444


Q ss_pred             ccccccceeeecccccccCCCCCCeeecccc
Q 011044          277 TLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN  307 (495)
Q Consensus       277 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  307 (495)
                      .+++.  .+. .+| .+..+++|+.+++.++
T Consensus       230 ~l~~~--~l~-~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          230 ARSTY--NLK-KLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCT--TCC-CCC-CTTTCCSCCEEECSCH
T ss_pred             hccCC--CcC-cCC-CchhCcChhhCcCCCC
Confidence            33332  222 344 3566777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=7.2e-21  Score=182.15  Aligned_cols=205  Identities=22%  Similarity=0.360  Sum_probs=124.4

Q ss_pred             cCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCC
Q 011044           62 ISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFH  141 (495)
Q Consensus        62 L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~  141 (495)
                      +..+.+++.+  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. + ..+++|++|++++|.++
T Consensus        26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~-~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-L-KNLTKITELELSGNPLK   98 (308)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-G-TTCCSCCEEECCSCCCS
T ss_pred             hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-H-ccCCCCCEEEccCCcCC
Confidence            3444444432  24467788888888887763 44 57777788888888777753 333 3 33777777777777776


Q ss_pred             ccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhh
Q 011044          142 GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIF  221 (495)
Q Consensus       142 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  221 (495)
                      + + ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++. +. +.
T Consensus        99 ~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~  170 (308)
T 1h6u_A           99 N-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LA  170 (308)
T ss_dssp             C-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred             C-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hc
Confidence            4 2 3566777777777777777642 2 26667777777777777664322  66666677777766666632 22 56


Q ss_pred             cCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044          222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS  286 (495)
Q Consensus       222 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  286 (495)
                      .+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +. .+++|+.|++++|.++
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~-~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA-NTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT-TCTTCCEEEEEEEEEE
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc-CCCCCCEEEccCCeee
Confidence            66666666666666654432  4555566666666665552221  22 4455555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=3.2e-21  Score=198.16  Aligned_cols=204  Identities=25%  Similarity=0.351  Sum_probs=157.2

Q ss_pred             CCCCCCCCC-----cccee-eeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEE
Q 011044           35 NWNTSSSFC-----YWTGV-TCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSI  108 (495)
Q Consensus        35 ~w~~~~~~c-----~w~gv-~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  108 (495)
                      +|.....+|     .|.++ .|..  .+++.|+|++|++++ +|..+  +++|++|+|++|.++ .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            676666777     68888 6764  589999999999987 66655  488999999999998 667   457899999


Q ss_pred             EccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044          109 YFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL  188 (495)
Q Consensus       109 ~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  188 (495)
                      ++++|.+++ +|. +.   .+|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+
T Consensus       106 ~Ls~N~l~~-ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          106 DACDNRLST-LPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             ECCSSCCSC-CCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             EccCCCCCC-cch-hh---cCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence            999999876 776 43   389999999999886 565   67889999999998885 555   567899999999988


Q ss_pred             CCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCC-------ceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044          189 QGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSL-------LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       189 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++. +|..+..+++|+.|++++|.++
T Consensus       173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCC
T ss_pred             CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCC
Confidence            86 665 55  78888999888887 5555 443  56       788888887774 5555666778888888888777


Q ss_pred             cccchhhh
Q 011044          262 GELPANIG  269 (495)
Q Consensus       262 ~~~~~~~~  269 (495)
                      +.+|..+.
T Consensus       244 ~~~p~~l~  251 (571)
T 3cvr_A          244 SRIRESLS  251 (571)
T ss_dssp             HHHHHHHH
T ss_pred             CcCHHHHH
Confidence            66665544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.85  E-value=4.6e-24  Score=223.65  Aligned_cols=328  Identities=15%  Similarity=0.104  Sum_probs=198.1

Q ss_pred             CCCeEEEEcCCCCCccc---C------------chhccCCCCCCEEeCcCCcCCccCCcccc-CCCCCcEEEccCC-ccc
Q 011044           54 SHRVAALNISGLNLTGT---I------------PSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNN-TLF  116 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~---~------------~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~~~  116 (495)
                      .+++++|+++++.....   .            +.....+++|++|+|++|.+++..+..+. .+++|++|++++| .+.
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            47899999998763221   1            12235689999999999999887776665 6899999999999 454


Q ss_pred             ccCChhHhhcCCCCCEEEcccccCCccCCccc----CCCCCCCEEEcccCc--Cccc-cCccccCCCCCCEEEccCCCCC
Q 011044          117 GELPPNFCNQMSNLESLFLKYNMFHGKIPSTL----SSCKQLRELSLSSNY--FSGT-IPKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       117 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      +.....+...+++|++|++++|.+++..+..+    ..+++|++|++++|.  +... ++..+..+++|++|++++|...
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            33334555459999999999999776544333    477899999999986  3211 2222355799999999998322


Q ss_pred             CCCChhhhCcccccEEEecCCc--------------------------CC----CcCchhhhcCCCCceeeCCCCcCCCC
Q 011044          190 GEIPEELGNLAELEMLWLQNNS--------------------------LT----GTIPSSIFSLSSLLNLDLSLNNFTGI  239 (495)
Q Consensus       190 ~~~~~~l~~l~~L~~L~l~~n~--------------------------l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~  239 (495)
                      +.++..+..+++|+.|++..+.                          +.    ..++..+..+++|++|++++|.+++.
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~  304 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY  304 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred             HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence            2244455555566666543321                          00    11222333456677777766664432


Q ss_pred             CC-cccccccccceeeccCcccccccchhhhhC----------------------------------Cccccccccccce
Q 011044          240 IP-SSIGNLSSLQKLYLSDNQLSGELPANIGNN----------------------------------LPSLQTLSLYVND  284 (495)
Q Consensus       240 ~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----------------------------------l~~L~~L~L~~n~  284 (495)
                      .. ..+..+++|+.|++++| +.+.....+...                                  +++|+.|.+..+.
T Consensus       305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~  383 (594)
T 2p1m_B          305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ  383 (594)
T ss_dssp             HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred             HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence            11 12335555666655555 221222222223                                  4444444444444


Q ss_pred             eeeccccccc-CCCCCCeeecc--c----cccccc-----CCccccCCCcCCEEeCcCCcccccCCcCccC-CCCCcEEE
Q 011044          285 FSGAIPKEIG-NLTKLTDLYLD--Q----NKLQGK-----IPHEIGNLRKLEWLMLSHNKLVGVVPAPIFN-LSTLISLQ  351 (495)
Q Consensus       285 l~~~~~~~l~-~l~~L~~L~L~--~----n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~  351 (495)
                      +++.....+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+.+..+..+.. +++|+.|+
T Consensus       384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~  462 (594)
T 2p1m_B          384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS  462 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred             cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence            4433333332 35677777776  2    334311     111245667777777766 555444334443 77888999


Q ss_pred             ccCCcCceecCCCCCCCCCChhhhhhhhcCCC
Q 011044          352 LHNNSLSGSLPSSADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       352 l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  383 (495)
                      +++|.+++..+......+++|+.|++.+|..+
T Consensus       463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             EESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            98888765433332234788999999888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=8.3e-20  Score=164.44  Aligned_cols=162  Identities=26%  Similarity=0.319  Sum_probs=88.8

Q ss_pred             CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL  207 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  207 (495)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34555555555554333334455555555555555555433334455555555555555555444444555556666666


Q ss_pred             cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeee
Q 011044          208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG  287 (495)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  287 (495)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+        .+++|+.|+++.|.+++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence            6665554444445556666666666666655555445566666666666665542        34456666666666666


Q ss_pred             cccccccCCC
Q 011044          288 AIPKEIGNLT  297 (495)
Q Consensus       288 ~~~~~l~~l~  297 (495)
                      .+|..++.++
T Consensus       180 ~ip~~~~~l~  189 (208)
T 2o6s_A          180 VVRNSAGSVA  189 (208)
T ss_dssp             TBBCTTSSBC
T ss_pred             eeeccCcccc
Confidence            6665555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=7.7e-20  Score=178.36  Aligned_cols=200  Identities=20%  Similarity=0.152  Sum_probs=92.8

Q ss_pred             CEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCC-cccCCCCCCCE-EEc
Q 011044           82 QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIP-STLSSCKQLRE-LSL  159 (495)
Q Consensus        82 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l  159 (495)
                      ++++.+++.++ .+|..+  .+++++|+|++|.+. .+|...+.++++|++|+|++|.+.+.++ ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45556666665 455444  245666666666653 4444433346666666666665543333 34555555543 334


Q ss_pred             ccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC-CcCCCcCchhhhcCC-CCceeeCCCCcCC
Q 011044          160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN-NSLTGTIPSSIFSLS-SLLNLDLSLNNFT  237 (495)
Q Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~  237 (495)
                      .+|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..+..+. .++.|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            44555544455555566666666666655544333344444455555543 233322222333332 3444455554444


Q ss_pred             CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044          238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS  286 (495)
Q Consensus       238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  286 (495)
                      .+.+..+ ...+|+++++.+++..+.+|...+..+++|+.|++++|.++
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            3222222 22344444443321112333333333444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=3e-19  Score=183.49  Aligned_cols=186  Identities=26%  Similarity=0.347  Sum_probs=127.1

Q ss_pred             CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEc
Q 011044           80 SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL  159 (495)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  159 (495)
                      +|++|++++|.+++ +|..+.  ++|++|++++|.+. .+|    ..+++|++|++++|.+++ +|. +.+  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            88899999988875 666553  77888888888885 676    237888888888888885 666 554  7888888


Q ss_pred             ccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044          160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI  239 (495)
Q Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  239 (495)
                      ++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.++ .
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            8888875 555   56788888888888775 554   56778888888887775 555 44  77777777777777 3


Q ss_pred             CCccccccccc-------ceeeccCcccccccchhhhhCCccccccccccceeeecccccccC
Q 011044          240 IPSSIGNLSSL-------QKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGN  295 (495)
Q Consensus       240 ~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  295 (495)
                      +|. +..  +|       +.|++++|.++ .+|..++ .+++|+.|++++|.+++..|..+..
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            333 433  45       66666666665 4555555 3556666666666655555544433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=6e-19  Score=161.17  Aligned_cols=162  Identities=25%  Similarity=0.331  Sum_probs=113.4

Q ss_pred             CCCCCCCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc
Q 011044           35 NWNTSSSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT  114 (495)
Q Consensus        35 ~w~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  114 (495)
                      -|....+.|.|+++.|..            +.++ .+|..+  .++|++|+|++|.+++..|..|.++++|++|++++|.
T Consensus        11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CCCCTTCEEETTEEECTT------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCCEeEccC------------CCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            566678899999999864            2333 344433  3788899999988887778888888888888888888


Q ss_pred             ccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCCh
Q 011044          115 LFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE  194 (495)
Q Consensus       115 ~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  194 (495)
                      + +.+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+.
T Consensus        76 l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           76 L-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             C-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            7 4555555445777777777777777555555667777777777777776 5566666677777777777766655445


Q ss_pred             hhhCcccccEEEecCCcCC
Q 011044          195 ELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       195 ~l~~l~~L~~L~l~~n~l~  213 (495)
                      .+..+++|+.|++++|.+.
T Consensus       154 ~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBC
T ss_pred             HHhCCCCCCEEEeeCCCcc
Confidence            5666666666666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.2e-18  Score=165.24  Aligned_cols=171  Identities=27%  Similarity=0.381  Sum_probs=91.7

Q ss_pred             cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044           76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR  155 (495)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (495)
                      ..+++|++|++++|.+... + .+..+++|++|++++|.+.+.. . + ..+++|++|++++|.+++ + ..+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l-~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-L-ANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-G-TTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-c-ccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            3455566666666655422 2 2555555555555555554322 2 2 225556666666655553 2 2355566666


Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN  235 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  235 (495)
                      +|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            666666655532  3455566666666666665533  345556666666666665553322  5555566666666665


Q ss_pred             CCCCCCcccccccccceeeccCcccc
Q 011044          236 FTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       236 l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      +++. + .+..+++|+.|++++|.++
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCCC-h-hhccCCCCCEEECcCCccc
Confidence            5543 2 2455555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.5e-18  Score=164.47  Aligned_cols=171  Identities=22%  Similarity=0.315  Sum_probs=148.3

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++++.|++++|.++..  +.+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+ ++. +. .+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LK-DLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GT-TCTTCCEEE
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hc-cCCCCCEEE
Confidence            5799999999999865  358999999999999999986544  8999999999999999864 433 44 499999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            999999853  5688999999999999999865  678999999999999999986544  8999999999999999985


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCC
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGII  240 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~  240 (495)
                       ++ .+..+++|+.|++++|.+....
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccCCc
Confidence             44 4899999999999999987643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.8e-18  Score=178.25  Aligned_cols=172  Identities=26%  Similarity=0.383  Sum_probs=97.0

Q ss_pred             ccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCC
Q 011044           75 LANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQL  154 (495)
Q Consensus        75 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  154 (495)
                      +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..|  +. .+++|+.|+|++|.+.+ ++ .+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence            3445555555665555542 22 35555566666666665543322  22 26666666666666553 22 45566666


Q ss_pred             CEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      ++|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            6666666666532  3355666666666666666543  445666666666666666654433  556666666666666


Q ss_pred             cCCCCCCcccccccccceeeccCcccc
Q 011044          235 NFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      .+++.  ..+..+++|+.|++++|.+.
T Consensus       186 ~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          186 HISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CCCCC--hHHccCCCCCEEEccCCcCc
Confidence            66543  23556666666666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=3.1e-20  Score=197.64  Aligned_cols=234  Identities=19%  Similarity=0.226  Sum_probs=130.9

Q ss_pred             CChHHHHHHHHHHhhCCCCCCccccCCCCCC-CCCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEE---
Q 011044            9 SITTDQQALLVLKAHVTDDPTNFLAKNWNTS-SSFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQAL---   84 (495)
Q Consensus         9 ~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~-~~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L---   84 (495)
                      ..+.++++|+++...+.+.....-. .|... ...+.|.+..+..  ++++.|+|.++.+... +..+.....|+.+   
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~  204 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSID  204 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCccccc
Confidence            3455779999998777332222222 56433 3567788887764  7899999999988763 3333333333332   


Q ss_pred             --eCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccC
Q 011044           85 --DLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN  162 (495)
Q Consensus        85 --~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  162 (495)
                        ++..|.+. ..+..+..+++|++|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|+++++|++|+|++|
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence              23334333 45677888999999999999985 78888875 999999999999998 78888999999999999999


Q ss_pred             cCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCC-CCceeeCCCCcCCCCCC
Q 011044          163 YFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLS-SLLNLDLSLNNFTGIIP  241 (495)
Q Consensus       163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~  241 (495)
                      .++ .+|..|+.+++|++|+|++|.++ .+|..|+++++|+.|+|++|.+++.+|..+..+. .+..+++++|.+++.+|
T Consensus       281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            998 77888999999999999999887 7788899999999999999999988887776543 22347788888887776


Q ss_pred             cccccccccceeeccCc
Q 011044          242 SSIGNLSSLQKLYLSDN  258 (495)
Q Consensus       242 ~~l~~~~~L~~L~l~~n  258 (495)
                      ..      |+.|+++.|
T Consensus       359 ~~------l~~l~l~~n  369 (727)
T 4b8c_D          359 HE------RRFIEINTD  369 (727)
T ss_dssp             CC---------------
T ss_pred             cc------cceeEeecc
Confidence            53      445555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=3.1e-18  Score=155.41  Aligned_cols=150  Identities=21%  Similarity=0.234  Sum_probs=75.5

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCC-ccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIP-SSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      .++++++.++. +|..+  .+.+++|+|++|.+++..+ ..|.++++|++|++++|.+.+..+..+.. +++|++|++++
T Consensus        15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCS
T ss_pred             EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCCEEECCC
Confidence            56666677663 44433  2345777777777765543 33555666666666665554332222222 55555555555


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcC
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSL  212 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  212 (495)
                      |.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            555444444444445555555555544444444444444444444444444444444444444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=7e-18  Score=153.02  Aligned_cols=133  Identities=25%  Similarity=0.278  Sum_probs=70.9

Q ss_pred             CCEEEcccccCCccCC-cccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEec
Q 011044          130 LESLFLKYNMFHGKIP-STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQ  208 (495)
Q Consensus       130 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  208 (495)
                      +++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3444444444443322 234445555555555555554444445555555555555555554444445555555555555


Q ss_pred             CCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccc
Q 011044          209 NNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG  262 (495)
Q Consensus       209 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~  262 (495)
                      +|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            555555445555555556666666665555555555556666666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=6e-18  Score=175.69  Aligned_cols=177  Identities=23%  Similarity=0.316  Sum_probs=151.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ++|+.|++++|.+...  +.+..+++|++|+|++|.+.+..+  +..+++|++|+|++|.+.+ +| .+.. +++|+.|+
T Consensus        43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~-l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKD-LKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTT-CTTCCEEE
T ss_pred             CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhcc-CCCCCEEE
Confidence            6799999999999754  368999999999999999986554  8999999999999999864 44 4444 99999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      |++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+++
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            99999985 3 4688999999999999999865  678999999999999999997655  8999999999999999985


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN  246 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  246 (495)
                      .  ..+..+++|+.|+|++|.+.+.....+..
T Consensus       190 l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~  219 (605)
T 1m9s_A          190 L--RALAGLKNLDVLELFSQECLNKPINHQSN  219 (605)
T ss_dssp             C--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred             C--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence            4  46899999999999999988654433333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=7.1e-18  Score=153.00  Aligned_cols=150  Identities=24%  Similarity=0.269  Sum_probs=91.6

Q ss_pred             EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc
Q 011044           60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM  139 (495)
Q Consensus        60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~  139 (495)
                      +++++++++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.. +++|++|++++|.
T Consensus        16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGNK   91 (220)
T ss_dssp             EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCSSC
T ss_pred             EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCCCc
Confidence            344455555 3444333  67888888888887666667777777777777777775544544444 6666666666666


Q ss_pred             CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66444444556666666666666666555555666666666666666665544445555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=7.9e-18  Score=152.66  Aligned_cols=134  Identities=25%  Similarity=0.299  Sum_probs=84.4

Q ss_pred             CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL  207 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  207 (495)
                      ++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            34555666666555444445666666666666666666555666666666666666666666444444566666666666


Q ss_pred             cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044          208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666666555666666666666666666666666555666666777777766654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=7.1e-18  Score=165.11  Aligned_cols=177  Identities=25%  Similarity=0.247  Sum_probs=129.1

Q ss_pred             CEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEccc
Q 011044           82 QALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSS  161 (495)
Q Consensus        82 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  161 (495)
                      ++++++++.++ .+|..+.  +.+++|++++|.+.+..+..+...+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57888888887 5665543  45788888888885444333332488888888888888876667788888888888888


Q ss_pred             CcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhh---hcCCCCceeeCCCCcCCC
Q 011044          162 NYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSI---FSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~  238 (495)
                      |.+++..+..|..+++|++|+|++|.+.+..+..|.++++|+.|+|++|.++...+..+   ..+++|+.|+|++|.+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            88886666677888888888888888887667778888888888888888875433333   457788888888888776


Q ss_pred             CCCcccccccc--cceeeccCcccc
Q 011044          239 IIPSSIGNLSS--LQKLYLSDNQLS  261 (495)
Q Consensus       239 ~~~~~l~~~~~--L~~L~l~~n~l~  261 (495)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            65555666655  367777777665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=8.6e-18  Score=164.52  Aligned_cols=175  Identities=25%  Similarity=0.207  Sum_probs=143.1

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCcccc-CCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      .+++++++++. +|..+.  +.+++|+|++|.+++..+..+. ++++|++|++++|.+.+..+..+. .+++|++|+|++
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCC
Confidence            56777777774 555443  4689999999999977777777 899999999999999654444454 499999999999


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhh---hCcccccEEEecCCcCCC
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL---GNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~  214 (495)
                      |.++...+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++...+..+   ..+++|+.|+|++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99987777788999999999999999998888889999999999999999985444444   578999999999999996


Q ss_pred             cCchhhhcCCC--CceeeCCCCcCC
Q 011044          215 TIPSSIFSLSS--LLNLDLSLNNFT  237 (495)
Q Consensus       215 ~~~~~l~~l~~--L~~L~Ls~n~l~  237 (495)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            66677888886  488999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=7.3e-18  Score=150.25  Aligned_cols=152  Identities=22%  Similarity=0.207  Sum_probs=70.2

Q ss_pred             cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044           76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR  155 (495)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (495)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+. . +..+.. +++|++|++++|.+++..+..++.+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTT-CTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhc-CCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34455555555555554 333 3444555555555555331 1 122222 45555555555555444444455555555


Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCC-CCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK-LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      +|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            55555555554444445555555555555554 32 222 34444445555555444442 11 3444444444444444


Q ss_pred             cC
Q 011044          235 NF  236 (495)
Q Consensus       235 ~l  236 (495)
                      .+
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.2e-17  Score=149.67  Aligned_cols=133  Identities=31%  Similarity=0.372  Sum_probs=79.4

Q ss_pred             CCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044          128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL  207 (495)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  207 (495)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45555555555555544555555666666666666655433344555666666666666665444444556666666666


Q ss_pred             cCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044          208 QNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       208 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            666665 45555666666666666666666555555666666666666666655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.8e-17  Score=147.71  Aligned_cols=153  Identities=19%  Similarity=0.265  Sum_probs=104.9

Q ss_pred             cCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCC
Q 011044          100 FNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT  179 (495)
Q Consensus       100 ~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (495)
                      ..+++|++|++++|.+. .+| .+.. +++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            55677778888887774 555 3433 777888888777554  234677777777777777777766667777777777


Q ss_pred             EEEccCCCCCCCCChhhhCcccccEEEecCCc-CCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCc
Q 011044          180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNS-LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDN  258 (495)
Q Consensus       180 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n  258 (495)
                      +|++++|.+++..+..++.+++|++|++++|. ++ .++ .+..+++|++|++++|.+++..  .+..+++|+.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            77777777776666777777777777777776 44 344 5677777777777777776532  4666677777777777


Q ss_pred             ccc
Q 011044          259 QLS  261 (495)
Q Consensus       259 ~l~  261 (495)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.6e-17  Score=155.01  Aligned_cols=166  Identities=23%  Similarity=0.316  Sum_probs=85.7

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      +++.++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. + ..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l-~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-L-KDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-G-TTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-h-ccCCCCCEEEC
Confidence            3445556666665432  4556666777777766665 333 455666666666666665432 22 2 23566666666


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      ++|.+++ ++. +.. ++|++|++++|.+++.  ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus        93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            6665553 222 112 5555555555555532  2355555555555555555432 2 344555555555555555433


Q ss_pred             CchhhhcCCCCceeeCCCCcCC
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                        ..+..+++|+.|++++|.+.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCccc
Confidence              33444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=2.8e-19  Score=184.58  Aligned_cols=178  Identities=21%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCc-------------ccccCChhHhhcCCCCCEEE-cccccCC
Q 011044           76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNT-------------LFGELPPNFCNQMSNLESLF-LKYNMFH  141 (495)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------~~~~~p~~~~~~l~~L~~L~-l~~n~l~  141 (495)
                      ..+++|+.|+|++|.+. .+|..++++++|+.|++++|.             ..+..|..+.. +++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhcccc
Confidence            45677777777777775 667777777777777775553             23333333333 55555555 3333221


Q ss_pred             ccCCc------ccCC--CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          142 GKIPS------TLSS--CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       142 ~~~~~------~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      . ++.      .+..  ...|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|..++++++|+.|++++|.++
T Consensus       424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence            0 000      0000  0124444444444442 333 444444444444444444 34444444444444444444444


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCC-CcccccccccceeeccCcccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGII-PSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      + +| .+..+++|+.|+|++|.+++.. |..++.+++|+.|++++|.++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            3 23 4444444444444444444443 444444444444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.3e-17  Score=155.54  Aligned_cols=169  Identities=25%  Similarity=0.292  Sum_probs=120.0

Q ss_pred             CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044           77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE  156 (495)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (495)
                      ++.++..++++.+.+++..  .+..+++|++|++++|.+. .++ .+.. +++|++|++++|.+++..+  +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            3455666777778776443  4677888888888888774 455 4444 7888888888888875433  778888888


Q ss_pred             EEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcC
Q 011044          157 LSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF  236 (495)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  236 (495)
                      |++++|.+++ ++. +.. ++|++|++++|.+++.  ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+
T Consensus        90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            8888888774 333 223 7788888888877743  3477778888888888877743 3 577777888888888877


Q ss_pred             CCCCCcccccccccceeeccCcccc
Q 011044          237 TGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       237 ~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++.  ..+..+++|+.|++++|.++
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             cch--HHhccCCCCCEEeCCCCccc
Confidence            765  45667777777777777766

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=2.2e-17  Score=175.76  Aligned_cols=187  Identities=24%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044           79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS  158 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (495)
                      +.++.|+|.+|.+.. .+..+     |+.++|+.+.+.               .+++..|.+. ..+..+..+++|+.|+
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~---------------~~~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSID---------------EDDDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CccceEEeeCCCCCc-chhhH-----hhcCccCccccc---------------Ccccccccee-cChhhhccCCCCcEEE
Confidence            557777777777653 23322     333333333321               1122223332 3344455555566666


Q ss_pred             cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      |++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ 
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence            6665555 44544555566666666666555 55555566666666666666655 45555566666666666666554 


Q ss_pred             CCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccc
Q 011044          239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK  291 (495)
Q Consensus       239 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  291 (495)
                      .+|..|+.+++|+.|+|++|.+++.+|..+......+..+++.+|.+++.+|.
T Consensus       307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            34444566666666666666665555544431111222355566665555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.4e-17  Score=160.98  Aligned_cols=218  Identities=12%  Similarity=0.074  Sum_probs=117.2

Q ss_pred             CCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCc----CCCcCchhhhcCCCC
Q 011044          151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS----LTGTIPSSIFSLSSL  226 (495)
Q Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L  226 (495)
                      +++|+.|++.+ .++..-+..|.++++|+++++.+|.+....+..|.++.++..+....+.    ........+.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55555555555 4444444445555555555555555543444445554444444433311    111122234444444


Q ss_pred             c-eeeCCCCcCCCCCCccc----ccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCe
Q 011044          227 L-NLDLSLNNFTGIIPSSI----GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTD  301 (495)
Q Consensus       227 ~-~L~Ls~n~l~~~~~~~l----~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  301 (495)
                      + .+.+....   .++..+    -...++..+.+.++-.. .....+...+++|+.+++++|.++......|.++.+|+.
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            4 33332211   111100    12334455555443211 111222223667777777777776666666777777777


Q ss_pred             eecccccccccCCccccCCCcCC-EEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhh
Q 011044          302 LYLDQNKLQGKIPHEIGNLRKLE-WLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELF  376 (495)
Q Consensus       302 L~L~~n~i~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  376 (495)
                      +++.+| +......+|.+|++|+ .+++.+ .+....+..|.++++|+.+++++|.+. .++...+..+++|+.++
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            777776 5555556677777777 777776 566566667777777777777777776 56666666677766553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=8.1e-19  Score=181.13  Aligned_cols=187  Identities=23%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             CCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCC-------------CCCCCChhhhCcccccEEE-ecCCcCCC
Q 011044          149 SSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK-------------LQGEIPEELGNLAELEMLW-LQNNSLTG  214 (495)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~  214 (495)
                      ..+++|+.|++++|.++ .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34455555555555554 455555555555555554432             3344555566666666665 4433221 


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                                .|..+.+++|.++...+      ..|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..++
T Consensus       424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             ----------hhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhh
Confidence                      11111122222211100      12444444444444 2333 22 4444555555555444 3444455


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccC-CcCccCCCCCcEEEccCCcCce
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVV-PAPIFNLSTLISLQLHNNSLSG  359 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~  359 (495)
                      .+++|+.|+|++|.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++.+
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            55555555555555543 33 4455555555555555555443 4455555555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=3e-16  Score=135.93  Aligned_cols=133  Identities=21%  Similarity=0.172  Sum_probs=95.6

Q ss_pred             CCCeEEEEcCCCCCc-ccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCE
Q 011044           54 SHRVAALNISGLNLT-GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLES  132 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~  132 (495)
                      ++++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence            467888888888887 67777778888888888888888755  66777888888888888886656555544 778888


Q ss_pred             EEcccccCCccC-CcccCCCCCCCEEEcccCcCccccC---ccccCCCCCCEEEccCCCCC
Q 011044          133 LFLKYNMFHGKI-PSTLSSCKQLRELSLSSNYFSGTIP---KEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       133 L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~  189 (495)
                      |++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            888888777432 2566777777777777777764433   35666667777777666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=6.9e-16  Score=136.68  Aligned_cols=131  Identities=24%  Similarity=0.350  Sum_probs=69.0

Q ss_pred             CEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCc-cccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC
Q 011044          131 ESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK-EIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN  209 (495)
Q Consensus       131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  209 (495)
                      ++++++++.++ .+|..+.  .+|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            34444444443 3333332  1455555555555433332 245555555555555555555455555555555555555


Q ss_pred             CcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCccccccc
Q 011044          210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGEL  264 (495)
Q Consensus       210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  264 (495)
                      |.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            5555544455555566666666666665555555566666666666666655433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=4.6e-16  Score=150.24  Aligned_cols=243  Identities=12%  Similarity=0.100  Sum_probs=163.1

Q ss_pred             CCCCCEEEcccccCC--ccCCcccCCCCCCCEEEcccCcCccccCccccC--------CCCCCEEEccCCCCCCCCChhh
Q 011044          127 MSNLESLFLKYNMFH--GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGN--------LTKLTRLNLRQNKLQGEIPEEL  196 (495)
Q Consensus       127 l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~l  196 (495)
                      +++|+.|+|++|.+.  .....   .++.++.+.+..|.+.   ...|.+        +++|+++++.+ .++...+.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            566777777776665  11111   2222344444444322   234555        99999999998 7776666789


Q ss_pred             hCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc----CCCCCCcccccccccc-eeeccCcccccccchhhhh-
Q 011044          197 GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN----FTGIIPSSIGNLSSLQ-KLYLSDNQLSGELPANIGN-  270 (495)
Q Consensus       197 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~-  270 (495)
                      .++++|+.+++.+|.+....+..|..+.++..+....+.    ........+..+..|+ .+.+...   +.++..++. 
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~  197 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKA  197 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHT
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhc
Confidence            999999999999998876667778887777777766532    2223334455666666 4444332   123333222 


Q ss_pred             --CCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCc
Q 011044          271 --NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLI  348 (495)
Q Consensus       271 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  348 (495)
                        ...++..+.+.++-...........+++|+.+++++|.++.....+|.+|++|+.+++.+| +.......|.++++|+
T Consensus       198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence              2345555555544222111111224789999999999999777778999999999999998 7777888999999999


Q ss_pred             -EEEccCCcCceecCCCCCCCCCChhhhhhhhcCC
Q 011044          349 -SLQLHNNSLSGSLPSSADVPLPNLEELFLWEYGR  382 (495)
Q Consensus       349 -~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~  382 (495)
                       .+++.+ .+. .++...+..+++|+.+++..+..
T Consensus       277 ~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          277 GTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             EEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCC
T ss_pred             EEEEEcc-cce-EEchhhhhCCccCCEEEeCCCcc
Confidence             999998 665 77888888999999998865543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.1e-15  Score=135.32  Aligned_cols=129  Identities=24%  Similarity=0.284  Sum_probs=80.0

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCc-cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPS-SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      .+++++++++ .+|..+.  ++|++|++++|.+++..+. .+.++++|++|++++|.+.+..|..+.. +++|++|++++
T Consensus        12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~   87 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCS
T ss_pred             EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECCC
Confidence            4556666664 4554443  3777888888777755543 3666677777777777665554554444 66666666666


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE  191 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  191 (495)
                      |.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            666655555566666666666666666665566666666666666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=7.1e-16  Score=133.53  Aligned_cols=107  Identities=26%  Similarity=0.274  Sum_probs=43.0

Q ss_pred             CCCEEEcccccCC-ccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEe
Q 011044          129 NLESLFLKYNMFH-GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL  207 (495)
Q Consensus       129 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  207 (495)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            3444444444433 23333334444444444444444322  33344444444444444444333333333444444444


Q ss_pred             cCCcCCCcC-chhhhcCCCCceeeCCCCcCC
Q 011044          208 QNNSLTGTI-PSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       208 ~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ++|.+++.. +..+..+++|+.|++++|.++
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            444443211 133333444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3.9e-16  Score=132.26  Aligned_cols=127  Identities=17%  Similarity=0.124  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCCCCc-ccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           55 HRVAALNISGLNLT-GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        55 ~~l~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+.++++|++|++++|.+.+.+|..+.. +++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEE
Confidence            57888888888887 67777778888888888888888755  56777888888888888876655554444 7777777


Q ss_pred             EcccccCCcc-CCcccCCCCCCCEEEcccCcCccccC---ccccCCCCCCEEEcc
Q 011044          134 FLKYNMFHGK-IPSTLSSCKQLRELSLSSNYFSGTIP---KEIGNLTKLTRLNLR  184 (495)
Q Consensus       134 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~  184 (495)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777642 23566667777777777776664433   345666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.1e-15  Score=129.62  Aligned_cols=109  Identities=23%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             CCCCEEEcccccCC-ccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044          128 SNLESLFLKYNMFH-GKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW  206 (495)
Q Consensus       128 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  206 (495)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            33444444444444 33444444445555555555544433  3344444555555555544443444444444444444


Q ss_pred             ecCCcCCCc-CchhhhcCCCCceeeCCCCcCCC
Q 011044          207 LQNNSLTGT-IPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       207 l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      +++|.+++. .+..+..+++|++|++++|.+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            444444431 12334444444444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1e-13  Score=136.90  Aligned_cols=247  Identities=11%  Similarity=0.108  Sum_probs=122.5

Q ss_pred             CCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEE
Q 011044           78 LSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLREL  157 (495)
Q Consensus        78 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  157 (495)
                      +..++.+.+.. .++..-..+|.++ +|+.+.+..+ + ..++...+..+ +|+.+.+.. .+......+|.+|++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            45566666643 3443444555554 5777776655 2 34444444433 566666654 3443444566666666666


Q ss_pred             EcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCC
Q 011044          158 SLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ++.+|.++......|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.+.
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            6666666543333343 456666666533 44334445666666666666543 33222233333 455555553 2334


Q ss_pred             CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccc
Q 011044          238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI  317 (495)
Q Consensus       238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l  317 (495)
                      .+....|..|++|+.+.+.++.+...                    .........|.++++|+.+++.+ .+......+|
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~--------------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF  319 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDD--------------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL  319 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCC--------------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCC--------------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence            34444555555555555554433200                    00012233444555555555552 2333334445


Q ss_pred             cCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCc
Q 011044          318 GNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS  358 (495)
Q Consensus       318 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  358 (495)
                      .+|++|+.+.+..+ +.......|.++ +|+.+++.+|.+.
T Consensus       320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            55555555555332 333444455555 5555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=1.1e-13  Score=136.56  Aligned_cols=262  Identities=13%  Similarity=0.144  Sum_probs=175.0

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      .++.+.+.+ .++.....+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+ ..++...+..|++|+.+++
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l-~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TL-EQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TC-CEECSSTTTTCTTCCEEEC
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Cc-cEehHHHhhCcccCCeeec
Confidence            344455544 3444445677775 7999999776 665666778775 799999986 44 4566666666999999999


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCc
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                      .+|.++......|. +.+|+.+.+..+ +...-...|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.++..
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            99998865555665 689999999855 66566778999999999999875 44444566777 789999995 556655


Q ss_pred             CchhhhcCCCCceeeCCCCcCC-----CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccc
Q 011044          216 IPSSIFSLSSLLNLDLSLNNFT-----GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP  290 (495)
Q Consensus       216 ~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  290 (495)
                      ...+|.++++|+.+.+.++.+.     .+....|..|++|+.+.+.+                          .+.....
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--------------------------~i~~I~~  316 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--------------------------SIRILGQ  316 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--------------------------TCCEECT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--------------------------ceEEEhh
Confidence            5778999999999999887654     23334455555555555542                          2332333


Q ss_pred             ccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCC-CCcEEEccCCc
Q 011044          291 KEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS-TLISLQLHNNS  356 (495)
Q Consensus       291 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  356 (495)
                      ..|.++.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.+.......|.+++ .+..|++..+.
T Consensus       317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            44555555555555433 333344556666 666666666655544455555553 55666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.8e-14  Score=126.27  Aligned_cols=108  Identities=30%  Similarity=0.411  Sum_probs=57.8

Q ss_pred             CCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044          153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS  232 (495)
Q Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  232 (495)
                      +|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4555555555554 344445555555555555555554444445555555555555555554444455555555555555


Q ss_pred             CCcCCCCCCcccccccccceeeccCcccc
Q 011044          233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       233 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      +|.++...+..+..+++|+.|++++|.+.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            55555444444555556666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=3.3e-14  Score=125.87  Aligned_cols=125  Identities=28%  Similarity=0.349  Sum_probs=64.6

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccc
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN  138 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n  138 (495)
                      .+++++++++ .+|..+  .++|++|++++|.++ .+|..+.++++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCC
Confidence            4555566665 344333  246677777777665 4555566666666666666655433222222 2555555555555


Q ss_pred             cCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044          139 MFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL  188 (495)
Q Consensus       139 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  188 (495)
                      .+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55544444455555555555555555433333344444455555544444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=4e-14  Score=123.54  Aligned_cols=85  Identities=32%  Similarity=0.303  Sum_probs=33.8

Q ss_pred             CCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEec
Q 011044          129 NLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQ  208 (495)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  208 (495)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            34444444444433223333444444444444444443323333344444444444444443333333334444444444


Q ss_pred             CCcCC
Q 011044          209 NNSLT  213 (495)
Q Consensus       209 ~n~l~  213 (495)
                      +|.++
T Consensus       109 ~N~l~  113 (177)
T 2o6r_A          109 TNQLK  113 (177)
T ss_dssp             SSCCS
T ss_pred             CCcce
Confidence            44433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=5.5e-14  Score=122.67  Aligned_cols=133  Identities=25%  Similarity=0.324  Sum_probs=107.5

Q ss_pred             CCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC
Q 011044          130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN  209 (495)
Q Consensus       130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  209 (495)
                      .+.++++++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            466777777776 445433  36899999999999876666778899999999999999876666678899999999999


Q ss_pred             CcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccc
Q 011044          210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELP  265 (495)
Q Consensus       210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  265 (495)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99987666677889999999999999987776667888899999999998875443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=4.3e-14  Score=123.21  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             ccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCC
Q 011044           99 IFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL  178 (495)
Q Consensus        99 l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (495)
                      +.++.+|++|++++|.+. .+|. +....++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            444555666666666554 2332 333234677777777766643  456677777777777777765433444667777


Q ss_pred             CEEEccCCCCCCCCCh--hhhCcccccEEEecCCcCCCcCchh----hhcCCCCceeeCCCCcC
Q 011044          179 TRLNLRQNKLQGEIPE--ELGNLAELEMLWLQNNSLTGTIPSS----IFSLSSLLNLDLSLNNF  236 (495)
Q Consensus       179 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l  236 (495)
                      ++|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.|+++.|..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77777777764 3443  5666666666766666665 33432    55566666666655543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.4e-16  Score=142.07  Aligned_cols=128  Identities=27%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCCCcccCch------hccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCC
Q 011044           56 RVAALNISGLNLTGTIPS------ELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSN  129 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~  129 (495)
                      +++.++++++.+++..|.      .+..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+.. +++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCc
Confidence            344444444444444443      56666666666666666654 44 5556666666666666653 44443333 455


Q ss_pred             CCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCC
Q 011044          130 LESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  189 (495)
                      |++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            6666666555553 22 34455555555555555543211 23444555555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=2.4e-16  Score=140.50  Aligned_cols=133  Identities=25%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             ccCCCCCCEEeCcCCcCCccCCc------cccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCccc
Q 011044           75 LANLSSLQALDLSFNWFYGSIPS------SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTL  148 (495)
Q Consensus        75 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l  148 (495)
                      +...+.++.++++.+.+.+.+|.      .+..+++|++|++++|.+.+ +| .+.. +++|++|++++|.++ .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-MENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-HTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-CCCCCEEECCCCCcc-cccchh
Confidence            44556777777777777766664      55555666666666665543 44 3333 555555555555555 344444


Q ss_pred             CCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCC
Q 011044          149 SSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            444555555555555553 22 34445555555555555442111 23444555555555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=8.3e-14  Score=121.40  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCC-CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANL-SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++.|++++|.++.. +. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+. .+|..++..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence            5678888888887743 43 4444 4788888888887754  46777777777777777775 3454443347777777


Q ss_pred             EcccccCCccCCc--ccCCCCCCCEEEcccCcCccccCcc----ccCCCCCCEEEccCCCC
Q 011044          134 FLKYNMFHGKIPS--TLSSCKQLRELSLSSNYFSGTIPKE----IGNLTKLTRLNLRQNKL  188 (495)
Q Consensus       134 ~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l  188 (495)
                      ++++|.++ .+|.  .+..+++|++|++++|.+. .+|..    +..+++|++|++++|..
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77777765 3443  5566666666666666665 33432    55555666666555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.38  E-value=1.7e-11  Score=121.25  Aligned_cols=291  Identities=14%  Similarity=0.078  Sum_probs=155.5

Q ss_pred             hhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccccc-------------
Q 011044           73 SELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNM-------------  139 (495)
Q Consensus        73 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-------------  139 (495)
                      .+|.++.+|+.+.|..+ ++..-..+|.+|.+|+.+++..+ + ..++...+..+.+|+.+.+..+-             
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCceeeecceeeecccc
Confidence            34555555555555422 33333344555555555555433 1 23333333334555444433221             


Q ss_pred             --------CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCc
Q 011044          140 --------FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS  211 (495)
Q Consensus       140 --------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  211 (495)
                              .......+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ +.......|.++..|+.+.+..+.
T Consensus       142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             SEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             cccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence                    111122345556666666665432 2233344555666666666544 222233445555556655554432


Q ss_pred             CCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccc
Q 011044          212 LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPK  291 (495)
Q Consensus       212 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  291 (495)
                      ..  +........+|+.+.+... +.......+..+..++.+.+..+..  .+....+..+..++.+......+   ...
T Consensus       220 ~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~  291 (394)
T 4fs7_A          220 YY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEK  291 (394)
T ss_dssp             CE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTT
T ss_pred             eE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccc
Confidence            21  2223333455666555432 2223334456666777777665533  22323333555666555544332   223


Q ss_pred             cccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCC
Q 011044          292 EIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPN  371 (495)
Q Consensus       292 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  371 (495)
                      .+..+.+|+.+.+..+ +......+|.+|.+|+.+++..+ +......+|.++.+|+.+.+..+ +. .+....+..+++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence            5667778888887654 44445567888888888888644 55556677888888888888766 54 667777777888


Q ss_pred             hhhhhhhhc
Q 011044          372 LEELFLWEY  380 (495)
Q Consensus       372 L~~L~l~~~  380 (495)
                      |+.+.++.+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            887776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=1.4e-14  Score=141.65  Aligned_cols=160  Identities=20%  Similarity=0.157  Sum_probs=86.2

Q ss_pred             CCCCEEeCcCCcCCccCCcccc-----CCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCccc-----
Q 011044           79 SSLQALDLSFNWFYGSIPSSIF-----NMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTL-----  148 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----  148 (495)
                      +.|++|+|++|.++......+.     ..++|++|++++|.+.+.....+...+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            5566777777666543222222     125666777777666544334444445566777777766654322222     


Q ss_pred             CCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCC----CChhhhCcccccEEEecCCcCCCc----C
Q 011044          149 SSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGE----IPEELGNLAELEMLWLQNNSLTGT----I  216 (495)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~  216 (495)
                      ...++|++|++++|.++..    ++..+..+++|++|+|++|.+.+.    ++..+...++|+.|++++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2345666666666666532    233345556666666666665532    133344555666666666666532    2


Q ss_pred             chhhhcCCCCceeeCCCCcCCC
Q 011044          217 PSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       217 ~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      +..+...++|++|+|++|.+++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHhCCCCCEEeccCCCCCH
Confidence            2333445566666666665553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=6e-12  Score=108.79  Aligned_cols=36  Identities=36%  Similarity=0.442  Sum_probs=13.2

Q ss_pred             CCEEEcccCcCccccCccccCCCCCCEEEccCCCCC
Q 011044          154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      |++|++++|.+++..|..|..+++|++|++++|.++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   67 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT   67 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence            333333333333333333333333333333333333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=5.9e-12  Score=108.82  Aligned_cols=108  Identities=26%  Similarity=0.298  Sum_probs=93.2

Q ss_pred             CCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044          153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS  232 (495)
Q Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  232 (495)
                      ..+++++++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578888888887 4666553  789999999999998888889999999999999999997767778899999999999


Q ss_pred             CCcCCCCCCcccccccccceeeccCcccccc
Q 011044          233 LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE  263 (495)
Q Consensus       233 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~  263 (495)
                      +|.+++..+..+..+++|+.|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999988777789999999999999988743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=8.9e-12  Score=108.10  Aligned_cols=83  Identities=25%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             CCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCC
Q 011044          153 QLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLS  232 (495)
Q Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  232 (495)
                      +|++|++++|.+++..|..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            33444444444433333333344444444444444433222223333444444444443332222223333334444443


Q ss_pred             CCc
Q 011044          233 LNN  235 (495)
Q Consensus       233 ~n~  235 (495)
                      +|.
T Consensus       114 ~N~  116 (174)
T 2r9u_A          114 NNP  116 (174)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=5.3e-14  Score=137.54  Aligned_cols=168  Identities=15%  Similarity=0.163  Sum_probs=127.4

Q ss_pred             CCeEEEEcCCCCCcccCchhc----c-CCCCCCEEeCcCCcCCccCCcccc-CCCCCcEEEccCCcccccCChhHh----
Q 011044           55 HRVAALNISGLNLTGTIPSEL----A-NLSSLQALDLSFNWFYGSIPSSIF-NMSSLLSIYFNNNTLFGELPPNFC----  124 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~----  124 (495)
                      +.++.|+|++|.++......+    . ..++|++|+|++|.+++.....+. .+++|++|++++|.+.+.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            579999999999986544333    3 237999999999999765443333 467899999999999655444443    


Q ss_pred             hcCCCCCEEEcccccCCcc----CCcccCCCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCC----C
Q 011044          125 NQMSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGE----I  192 (495)
Q Consensus       125 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~  192 (495)
                      ...++|++|++++|.++..    ++..+..+++|++|+|++|.++..    ++..+...++|++|+|++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2368899999999998752    445557889999999999998753    355667788999999999998753    3


Q ss_pred             ChhhhCcccccEEEecCCcCCCcCchhhhc
Q 011044          193 PEELGNLAELEMLWLQNNSLTGTIPSSIFS  222 (495)
Q Consensus       193 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  222 (495)
                      +..+...++|++|++++|.++......+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            344556789999999999998654445544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=1e-11  Score=107.67  Aligned_cols=105  Identities=27%  Similarity=0.375  Sum_probs=90.8

Q ss_pred             CCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCC
Q 011044          154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL  233 (495)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  233 (495)
                      -+.+++++|.++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367888888886 5676654  7899999999999988888899999999999999999976566678899999999999


Q ss_pred             CcCCCCCCcccccccccceeeccCcccc
Q 011044          234 NNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       234 n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      |.+++..+..+..+++|+.|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            9999877777889999999999999887

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.23  E-value=2.5e-10  Score=112.80  Aligned_cols=286  Identities=14%  Similarity=0.088  Sum_probs=205.8

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc-------------------
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL-------------------  115 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-------------------  115 (495)
                      .+|+.+.|+. .++.....+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+-.                   
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~  148 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE  148 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence            5799999975 476666678999999999999755 5544456777787777766543210                   


Q ss_pred             -cccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCCh
Q 011044          116 -FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPE  194 (495)
Q Consensus       116 -~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  194 (495)
                       ...+....+..+.+|+.+.+..+. .......|.++.+|+.+.+..+ ++......|.++..|+.+.+..+...  +..
T Consensus       149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~  224 (394)
T 4fs7_A          149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGD  224 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECT
T ss_pred             cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eeh
Confidence             012334445568999999997654 3245567889999999999876 55455567888999999888766432  223


Q ss_pred             hhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcc
Q 011044          195 ELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS  274 (495)
Q Consensus       195 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  274 (495)
                      .......|+.+.+... ++......+..+..|+.+.+..+.. ......+..+..++.+......    ++...+..+.+
T Consensus       225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~  298 (394)
T 4fs7_A          225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSS  298 (394)
T ss_dssp             TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTT
T ss_pred             hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee----ecccccccccc
Confidence            3445578888888643 3323445678889999999987643 3455667788888888776653    33344447888


Q ss_pred             ccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccC
Q 011044          275 LQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN  354 (495)
Q Consensus       275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  354 (495)
                      |+.+.+..+ +.......|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +......+|.++.+|+.+++..
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            999888755 44455667889999999999754 65555678999999999999776 6666777899999999999876


Q ss_pred             C
Q 011044          355 N  355 (495)
Q Consensus       355 n  355 (495)
                      +
T Consensus       376 ~  376 (394)
T 4fs7_A          376 R  376 (394)
T ss_dssp             G
T ss_pred             C
Confidence            4

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.23  E-value=3.7e-10  Score=111.58  Aligned_cols=306  Identities=12%  Similarity=0.124  Sum_probs=168.0

Q ss_pred             eEEEEcCCCCCcccCchhccCCCCCCEEeCcCCc---CCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           57 VAALNISGLNLTGTIPSELANLSSLQALDLSFNW---FYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        57 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      |+.+.+... ++.....+|.++++|+.+.+..|.   ++..-..+|.+|.+|+.+.+..+-  ..++...+..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~--~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV--TEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC--SEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc--ceehhhhhhhhcccccc
Confidence            556666542 444444566666777777665542   333334556666666666555442  24444444446667777


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      .+..+ +.......|..+..|+.+.+..+ ++..-...|. ..+|+.+.+..+... .....+.++.++...........
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence            66543 22233445666666776666543 3322223333 345666666544222 33344556666666555433222


Q ss_pred             CcCchh--------------hhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccc
Q 011044          214 GTIPSS--------------IFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS  279 (495)
Q Consensus       214 ~~~~~~--------------l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  279 (495)
                      . ....              +.....+..+.+.. .+.......|..+..|+.+.+..+..  .+....+..++.|+.+.
T Consensus       219 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~  294 (394)
T 4gt6_A          219 A-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIE  294 (394)
T ss_dssp             B-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEE
T ss_pred             c-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecCccccccccccccc
Confidence            0 0000              01112233333322 12223345677788888888866533  34444444778888888


Q ss_pred             cccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCce
Q 011044          280 LYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSG  359 (495)
Q Consensus       280 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  359 (495)
                      +.. .+.......|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++....
T Consensus       295 l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~  371 (394)
T 4gt6_A          295 FSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW  371 (394)
T ss_dssp             CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred             CCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence            863 344455567888889999988764 55455677888999999988654 555556678889999999988875431


Q ss_pred             ecCCCCCCCCCChhhhhhhhc
Q 011044          360 SLPSSADVPLPNLEELFLWEY  380 (495)
Q Consensus       360 ~~~~~~~~~l~~L~~L~l~~~  380 (495)
                          ..+..+..|+.+.+..+
T Consensus       372 ----~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          372 ----NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             ----HTCBCCCCC--------
T ss_pred             ----hhhhccCCCCEEEeCCC
Confidence                12224566776665443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.8e-10  Score=111.67  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             CCccceeeeCCCCCCeEEEEcCCC-CCcccCchhccCCCCCCEEeCcC-CcCCccCCccccCCCCCcEEEccCCcccccC
Q 011044           42 FCYWTGVTCDVRSHRVAALNISGL-NLTGTIPSELANLSSLQALDLSF-NWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL  119 (495)
Q Consensus        42 ~c~w~gv~c~~~~~~l~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  119 (495)
                      .|.|..+.|.            ++ +++ .+|. |..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+.+..
T Consensus         7 ~C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   72 (347)
T 2ifg_A            7 PHGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA   72 (347)
T ss_dssp             CSSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred             cccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence            4766666553            44 666 3677 89999999999996 9998777778888888888888888886655


Q ss_pred             ChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCc
Q 011044          120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFS  165 (495)
Q Consensus       120 p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  165 (495)
                      |..|.. +++|+.|+|++|.+++..+..+..++ |+.|++.+|.+.
T Consensus        73 ~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           73 PDAFHF-TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TTGGGS-CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HHHhcC-CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            444443 77788888877777754444454444 777777776665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=2.3e-10  Score=111.02  Aligned_cols=104  Identities=21%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             EEEcccc-cCCccCCcccCCCCCCCEEEccc-CcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecC
Q 011044          132 SLFLKYN-MFHGKIPSTLSSCKQLRELSLSS-NYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQN  209 (495)
Q Consensus       132 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  209 (495)
                      .++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 666 4666 77777788888875 777766666777777788888877777776677777777777777777


Q ss_pred             CcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          210 NSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       210 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      |.+++..+..+..++ |+.|+|.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            777754444444444 7777777776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.08  E-value=6.1e-09  Score=102.77  Aligned_cols=296  Identities=9%  Similarity=0.083  Sum_probs=200.0

Q ss_pred             CchhccCCC-CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcc--cccCChhHhhcCCCCCEEEcccccCCccCCcc
Q 011044           71 IPSELANLS-SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL--FGELPPNFCNQMSNLESLFLKYNMFHGKIPST  147 (495)
Q Consensus        71 ~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~--~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~  147 (495)
                      ...+|.++. .|+.+.+-.+ ++..-..+|.+|.+|+.+.+..|.-  ...+....+..+.+|+.+.+..+ ++......
T Consensus        55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            345677774 5999999654 6656677899999999999987631  24566666666888988887655 44344567


Q ss_pred             cCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCc
Q 011044          148 LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLL  227 (495)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  227 (495)
                      |..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...-..+|. ...|+.+.+..+-.. .....+..+.++.
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~  208 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS  208 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence            888999999999754 44345567888899999998765 3323334454 356888888654332 4445677788888


Q ss_pred             eeeCCCCcCCCCCCccc-------------ccccccceeeccCcccccccchhhhhCCccccccccccceeeeccccccc
Q 011044          228 NLDLSLNNFTGIIPSSI-------------GNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIG  294 (495)
Q Consensus       228 ~L~Ls~n~l~~~~~~~l-------------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  294 (495)
                      ................+             .....+..+.+... +. .+....+..+..|+.+.+..+... .....+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~  285 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFM  285 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccc
Confidence            77765544321111001             11122333333221 22 233334447888999988765443 5556788


Q ss_pred             CCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhh
Q 011044          295 NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEE  374 (495)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  374 (495)
                      +++.|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ +. .+....+..+++|+.
T Consensus       286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNN  361 (394)
T ss_dssp             TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCE
T ss_pred             cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCE
Confidence            899999999974 455455678999999999999764 66566778999999999999755 54 677778888999998


Q ss_pred             hhhhh
Q 011044          375 LFLWE  379 (495)
Q Consensus       375 L~l~~  379 (495)
                      +.+.+
T Consensus       362 i~~~~  366 (394)
T 4gt6_A          362 IEYSG  366 (394)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            87754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.03  E-value=8.4e-11  Score=113.90  Aligned_cols=210  Identities=15%  Similarity=0.160  Sum_probs=99.3

Q ss_pred             CCCeEEEEcCCCCCcc-cC-------chhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhh
Q 011044           54 SHRVAALNISGLNLTG-TI-------PSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN  125 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~-~~-------~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~  125 (495)
                      +.+|+.|.+......+ ..       ..++..+++|+.|.+........   .+           +... .+.+. .+..
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~---~i-----------s~~~-~~~L~-~ll~  169 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ---EI-----------SWIE-QVDLS-PVLD  169 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC---CG-----------GGCB-CCBCH-HHHH
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc---cc-----------cccc-ccCHH-HHHh
Confidence            3568888887655542 21       23345677888887755422100   00           0000 01111 2222


Q ss_pred             cCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCcccc--CCCCCCEEEccC--CCCCCC-----CChhh
Q 011044          126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG--NLTKLTRLNLRQ--NKLQGE-----IPEEL  196 (495)
Q Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~-----~~~~l  196 (495)
                      .+|+|+.|.+++|.-. .++. +. +++|+.|++..|.+.......+.  .+++|++|+|+.  +...+.     +...+
T Consensus       170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            3555555555554211 1122 22 45566666655554433222232  456666665532  111111     01111


Q ss_pred             --hCcccccEEEecCCcCCCcCchhhh---cCCCCceeeCCCCcCCCC----CCcccccccccceeeccCcccccccchh
Q 011044          197 --GNLAELEMLWLQNNSLTGTIPSSIF---SLSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSGELPAN  267 (495)
Q Consensus       197 --~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~  267 (495)
                        ..+++|+.|++.+|.+....+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.+++.....
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              2456777777776666533333333   356777777777766643    2233345677777777777766443333


Q ss_pred             hhhCCccccccccccce
Q 011044          268 IGNNLPSLQTLSLYVND  284 (495)
Q Consensus       268 ~~~~l~~L~~L~L~~n~  284 (495)
                      +...+  ...++++.+.
T Consensus       327 l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC--CSEEECCSBC
T ss_pred             HHHHc--CCEEEecCCc
Confidence            33111  2335555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.99  E-value=5.5e-08  Score=95.35  Aligned_cols=283  Identities=10%  Similarity=0.086  Sum_probs=123.8

Q ss_pred             CeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEc
Q 011044           56 RVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFL  135 (495)
Q Consensus        56 ~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l  135 (495)
                      +|+.+.+.. +++.....+|.++.+|+.+.|..+ ++..-..+|.++ +|+.+.+..+ + ..++...+. ..+|+.+.+
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l-~~I~~~aF~-~~~L~~i~l  120 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-V-KKFGDYVFQ-GTDLDDFEF  120 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-C-CEECTTTTT-TCCCSEEEC
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-e-eEeccceec-cCCcccccC
Confidence            566666653 355444556777777777777543 443444556666 5666665543 2 244444444 236777776


Q ss_pred             ccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCC------------CChhhhCccccc
Q 011044          136 KYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGE------------IPEELGNLAELE  203 (495)
Q Consensus       136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------------~~~~l~~l~~L~  203 (495)
                      ..+- .......|.++ +|+.+.+..+ ++......+..+..++.+.+..+.....            ....+.....+.
T Consensus       121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            5542 21222334333 4555444432 3323334455566666665554332100            001111222222


Q ss_pred             EEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccc
Q 011044          204 MLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVN  283 (495)
Q Consensus       204 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n  283 (495)
                      .+.+.... .......+..+.+|+.+.+..+ +..+....+..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+
T Consensus       198 ~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~  273 (379)
T 4h09_A          198 EFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK  273 (379)
T ss_dssp             EEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC
T ss_pred             ccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc
Confidence            22222111 1112223334444555444332 22222333444455555554433 22 222222324444444444322


Q ss_pred             eeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEcc
Q 011044          284 DFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLH  353 (495)
Q Consensus       284 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  353 (495)
                       +.......+.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.
T Consensus       274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence             22222233444555555555444444333344555555555555332 333333444455555544443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=1.1e-09  Score=106.11  Aligned_cols=133  Identities=14%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCCCc---------ccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHh
Q 011044           54 SHRVAALNISGLNLT---------GTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFC  124 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~  124 (495)
                      .++|+.|.+.+....         +.+...+..+|+|+.|+|++|.-. .++. +. +++|++|++..|.+.......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence            368999998765331         234456678899999999887311 2333 33 78888888888776544434444


Q ss_pred             h-cCCCCCEEEcccc--cCCcc-----CCccc--CCCCCCCEEEcccCcCccccCcccc---CCCCCCEEEccCCCCC
Q 011044          125 N-QMSNLESLFLKYN--MFHGK-----IPSTL--SSCKQLRELSLSSNYFSGTIPKEIG---NLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       125 ~-~l~~L~~L~l~~n--~l~~~-----~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~  189 (495)
                      . .+++|++|+|+.+  ...+.     +...+  ..+++|++|++.+|.+....+..+.   .+++|++|+|+.|.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            2 4788888887532  11111     11112  2355566666655555432222221   2344555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.79  E-value=5.8e-07  Score=87.96  Aligned_cols=276  Identities=13%  Similarity=0.086  Sum_probs=185.2

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .+|+.++|..+ ++.....+|.++ .|+.+.+..+ ++.....+|..+ +|+.+.+..+.  ..+....+. ..+|+.+.
T Consensus        69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~--~~i~~~~F~-~~~l~~~~  141 (379)
T 4h09_A           69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT--TEIGNYIFY-NSSVKRIV  141 (379)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC--CEECTTTTT-TCCCCEEE
T ss_pred             CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc--ccccccccc-cceeeeee
Confidence            57889999754 665556678877 6888877544 443334455554 89999997753  244444444 33677776


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCcc------------ccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSG------------TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL  202 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  202 (495)
                      +..+ ++......+..+.+++.+.+..+....            .....+.....+..+.+...... .....+....+|
T Consensus       142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l  219 (379)
T 4h09_A          142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNL  219 (379)
T ss_dssp             ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSC
T ss_pred             ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeeccccccccc
Confidence            6544 333445567788888888776543221            11223344556666666544322 334556777888


Q ss_pred             cEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccccccccc
Q 011044          203 EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYV  282 (495)
Q Consensus       203 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~  282 (495)
                      +.+.+..+ +.......+.++..|+.+.+..+ ++.+....+..+.+|+.+.+..+ +. .++...+..+.+|+.+.+.+
T Consensus       220 ~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          220 KKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECC
T ss_pred             ceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccc
Confidence            88888654 33344567788899999999765 55555667888899999998654 43 45555566889999999988


Q ss_pred             ceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcCccCCC
Q 011044          283 NDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLS  345 (495)
Q Consensus       283 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  345 (495)
                      +.+.......|.++.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.++.
T Consensus       296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            8777666778999999999999764 55455678999999999988654 5544555666553

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.76  E-value=1.3e-09  Score=102.97  Aligned_cols=93  Identities=18%  Similarity=0.292  Sum_probs=62.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++|||||||++.||+||+.|....    .+ ...+.......   ...+.+..       ....|...+.++...
T Consensus       212 ~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~----~~-~~~~~~~~~~~---~~~p~~~~-------~~~~~~~~l~~li~~  276 (307)
T 3omv_A          212 NPFSFQSDVYSYGIVLYELMTGELPYSHI----NN-RDQIIFMVGRG---YASPDLSK-------LYKNCPKAMKRLVAD  276 (307)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTTTC----CC-HHHHHHHHHTT---CCCCCSTT-------SCTTSCHHHHHHHHH
T ss_pred             CCCCcHHHhHhHHHHHHHHHHCCCCCCCC----Ch-HHHHHHHHhcC---CCCCCccc-------ccccchHHHHHHHHH
Confidence            45678899999999999999999996431    12 12222222111   11111110       112344557889999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHHHHHh
Q 011044          464 CTVESPIRESTQRKLLQDSQKLETRCLK  491 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~~~~~  491 (495)
                      |.+.+|.+||+|.||++.|+.++...-+
T Consensus       277 cl~~dP~~RPs~~ei~~~Le~l~~~lpk  304 (307)
T 3omv_A          277 CVKKVKEERPLFPQILSSIELLQHSLPK  304 (307)
T ss_dssp             HTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred             HcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence            9999999999999999999988765433

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=98.76  E-value=5e-09  Score=99.23  Aligned_cols=95  Identities=11%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCC----------CCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG----------EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC  453 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~----------~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~  453 (495)
                      ++.+.++|||||||++.||+||+.|.......          ......+.+......    .++.+-...     ...++
T Consensus       193 ~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~rp~~p~~~-----~~~~~  263 (303)
T 3hmm_A          193 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPNRW-----QSCEA  263 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC----CCCCCCGGG-----GSSHH
T ss_pred             CccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhccc----CCCCCCccc-----cchHH
Confidence            35677899999999999999998765322111          122222222222211    122221110     12245


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ...+.+++..|.+.+|.+||||.||++.|+.++.
T Consensus       264 ~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~  297 (303)
T 3hmm_A          264 LRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             HHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence            6678899999999999999999999999998864

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.69  E-value=2.6e-09  Score=101.18  Aligned_cols=87  Identities=22%  Similarity=0.408  Sum_probs=60.3

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |.-..+..+.++|||||||++.|++| |+.|...     .+-.+.++.........               ..+.|...+
T Consensus       217 E~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~-----~~~~~~~~~i~~~~~~~---------------~p~~~~~~~  276 (308)
T 4gt4_A          217 EAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG-----YSNQDVVEMIRNRQVLP---------------CPDDCPAWV  276 (308)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT-----CCHHHHHHHHHTTCCCC---------------CCTTCCHHH
T ss_pred             HHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CcccchHHH
Confidence            43345567889999999999999999 8888643     22223332222221111               012345568


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      .++...|.+.+|.+||+|.||++.|+.+
T Consensus       277 ~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          277 YALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            8899999999999999999999999753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=2.5e-10  Score=104.92  Aligned_cols=63  Identities=29%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             cCCCCCEEEcccccCCc--cCCcccCCCCCCCEEEcccCcCccccCccccCCC--CCCEEEccCCCCCC
Q 011044          126 QMSNLESLFLKYNMFHG--KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLT--KLTRLNLRQNKLQG  190 (495)
Q Consensus       126 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~  190 (495)
                      .+++|++|+|++|.+++  .++..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            35666666666666654  2334444555556666655555532  1222222  45555555555443

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.64  E-value=9.2e-09  Score=98.31  Aligned_cols=90  Identities=19%  Similarity=0.302  Sum_probs=62.3

Q ss_pred             hhcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHH
Q 011044          378 WEYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       378 ~~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      +|.......+.++|||||||++.||+| |+.|...     .+-.+.+..........     .          ...|...
T Consensus       229 PE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~-----~~~~~~~~~i~~g~~~~-----~----------p~~~~~~  288 (329)
T 4aoj_A          229 PESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQ-----LSNTEAIDCITQGRELE-----R----------PRACPPE  288 (329)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS-----SCHHHHHHHHHHTCCCC-----C----------CTTCCHH
T ss_pred             hhhhcCCCCCccccccchHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCCCC-----C----------cccccHH
Confidence            344455667889999999999999999 8999643     22222222222111100     0          1123445


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      +.++...|.+.+|.+||+|.||++.|+.+..
T Consensus       289 ~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~  319 (329)
T 4aoj_A          289 VYAIMRGCWQREPQQRHSIKDVHARLQALAQ  319 (329)
T ss_dssp             HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence            7889999999999999999999999998864

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.62  E-value=8e-09  Score=97.34  Aligned_cols=87  Identities=18%  Similarity=0.344  Sum_probs=60.6

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|||||||++.||+| |+.|...     .+-.+.+..........               ....|...+.++
T Consensus       203 ~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~-----~~~~~~~~~i~~~~~~~---------------~p~~~~~~~~~l  262 (299)
T 4asz_A          203 MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQ-----LSNNEVIECITQGRVLQ---------------RPRTCPQEVYEL  262 (299)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT-----SCHHHHHHHHHHTCCCC---------------CCTTCCHHHHHH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCccchHHHHHH
Confidence            34567789999999999999999 8999643     22223332222221110               011234457889


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ...|.+.+|.+||+|.||++.|+.+.+.
T Consensus       263 i~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          263 MLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999988653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=6.8e-09  Score=90.73  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=52.5

Q ss_pred             cCchhccCCCCCCEEeCcCC-cCCcc----CCccccCCCCCcEEEccCCcccccCC----hhHhhcCCCCCEEEcccccC
Q 011044           70 TIPSELANLSSLQALDLSFN-WFYGS----IPSSIFNMSSLLSIYFNNNTLFGELP----PNFCNQMSNLESLFLKYNMF  140 (495)
Q Consensus        70 ~~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p----~~~~~~l~~L~~L~l~~n~l  140 (495)
                      .+...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...-.    ..+. ..++|++|+|++|.+
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcC
Confidence            34455667777888888877 76542    33445556677777777776643221    2222 245566666666655


Q ss_pred             Ccc----CCcccCCCCCCCEEEc--ccCcCc
Q 011044          141 HGK----IPSTLSSCKQLRELSL--SSNYFS  165 (495)
Q Consensus       141 ~~~----~~~~l~~l~~L~~L~l--~~n~l~  165 (495)
                      ...    +...+...+.|++|++  ++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            532    2333444455555555  445544

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.50  E-value=8.6e-08  Score=91.59  Aligned_cols=98  Identities=18%  Similarity=0.343  Sum_probs=74.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccC-CCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFN-GEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~-~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      +..+.++||||||+++.|++||+.|...... +...+..|........ ...++++.+...      ...++...+.++.
T Consensus       216 ~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li  289 (321)
T 2qkw_B          216 GRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADK------IRPESLRKFGDTA  289 (321)
T ss_dssp             CBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTC------SCHHHHHHHHHHH
T ss_pred             CCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccc------cCHHHHHHHHHHH
Confidence            4567789999999999999999999765433 2467778876655433 455666655322      1235677788999


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|.+.+|.+||++.||++.|+.+..
T Consensus       290 ~~~l~~dP~~Rps~~ell~~L~~~l~  315 (321)
T 2qkw_B          290 VKCLALSSEDRPSMGDVLWKLEYALR  315 (321)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcccCcCHHHHHHHHHHHhh
Confidence            99999999999999999999987753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=5.8e-08  Score=84.73  Aligned_cols=14  Identities=21%  Similarity=0.014  Sum_probs=7.0

Q ss_pred             ccccceeeccCccc
Q 011044          247 LSSLQKLYLSDNQL  260 (495)
Q Consensus       247 ~~~L~~L~l~~n~l  260 (495)
                      .++|++|++++|.+
T Consensus       150 n~~L~~L~L~~n~i  163 (185)
T 1io0_A          150 NTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CSSCCEEECCCSSH
T ss_pred             CCCcCEEeccCCCC
Confidence            34455555555544

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=98.43  E-value=4e-08  Score=94.75  Aligned_cols=86  Identities=15%  Similarity=0.284  Sum_probs=57.8

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      ..+..+.++|||||||++.||+| |+.|....-     ....+...+..+ ...     .          .+.+...+.+
T Consensus       260 ~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~-----~~~~~~~~i~~g~~~~-----~----------p~~~~~~~~~  319 (353)
T 4ase_A          260 FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-----IDEEFCRRLKEGTRMR-----A----------PDYTTPEMYQ  319 (353)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-----CSHHHHHHHHHTCCCC-----C----------CTTCCHHHHH
T ss_pred             hcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC-----HHHHHHHHHHcCCCCC-----C----------CccCCHHHHH
Confidence            34556788999999999999998 899964321     112222222111 000     0          0122334778


Q ss_pred             HHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      +...|.+.+|.+||+|.|+++.|+.+-.
T Consensus       320 li~~c~~~dP~~RPt~~eil~~L~~llq  347 (353)
T 4ase_A          320 TMLDCWHGEPSQRPTFSELVEHLGNLLQ  347 (353)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence            8899999999999999999999987643

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.43  E-value=8.1e-08  Score=91.96  Aligned_cols=95  Identities=23%  Similarity=0.471  Sum_probs=74.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccc---cCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEI---FNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~---~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      +..+.++||||+|+++.|++||+.|.+..   ......+.+|++...... ...+.+..+...      ....+...+.+
T Consensus       210 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~  283 (326)
T 3uim_A          210 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN------YKDEEVEQLIQ  283 (326)
T ss_dssp             SEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS------CCHHHHHHHHH
T ss_pred             CCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccc------cCHHHHHHHHH
Confidence            44677899999999999999999998632   234577889998877654 455556554322      23356777999


Q ss_pred             HHhhcCCCCccCchhHHHHHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ++..|.+.+|.+||++.||++.|+.
T Consensus       284 li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          284 VALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             HHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             HHHHHhCcCCccCCCHHHHHHHhcC
Confidence            9999999999999999999999974

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=98.27  E-value=6.1e-07  Score=85.73  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCC-----------CCHHHHHHHHhCCCcceeeeccccccccccccchhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE-----------MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQ  452 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~-----------~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~  452 (495)
                      ...+.++||||||+++.|++||+.|.+......           .....+..........    +.+....     ....
T Consensus       213 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~  283 (322)
T 3soc_A          213 RDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR----PVLRDYW-----QKHA  283 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCGGG-----GSSH
T ss_pred             cCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCC----CCccccc-----cccc
Confidence            345667899999999999999999865432211           1222222222221111    1110000     1124


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      +...+.++...|.+.+|.+||++.||++.|+.+++.
T Consensus       284 ~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          284 GMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            566688999999999999999999999999998753

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=98.26  E-value=6.5e-07  Score=84.45  Aligned_cols=92  Identities=15%  Similarity=0.221  Sum_probs=61.1

Q ss_pred             cccCCCcceeehhhhhhcccC----------CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTA----------KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM  454 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tg----------k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~  454 (495)
                      ..+.++||||||+++.|++||          +.|.............+.+........    +.+...     .....+.
T Consensus       199 ~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~  269 (301)
T 3q4u_A          199 DSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQR----PNIPNR-----WFSDPTL  269 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC----CCCCGG-----GGGSHHH
T ss_pred             cCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCC----CCCChh-----hccCccH
Confidence            345689999999999999999          666544443344444433332222111    111000     0122456


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..+.++...|.+.+|.+||++.||++.|+.|
T Consensus       270 ~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          270 TSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            6788999999999999999999999999876

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=98.21  E-value=8.6e-07  Score=85.30  Aligned_cols=94  Identities=12%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             ccCCCcceeehhhhhhcccC----------CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTA----------KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMS  455 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tg----------k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~  455 (495)
                      .+.++||||||+++.|++||          +.|.............+.+.......    .+.+....     ...++..
T Consensus       234 ~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~  304 (342)
T 1b6c_B          234 SFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL----RPNIPNRW-----QSCEALR  304 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGGG-----GTSHHHH
T ss_pred             cCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHh----CCCCcccc-----cchhHHH
Confidence            34679999999999999999          55654433333455555544332221    11111000     1224566


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .+.++...|...+|.+||++.+|++.|+.+...
T Consensus       305 ~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          305 VMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999999999988754

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.18  E-value=6.2e-07  Score=84.93  Aligned_cols=95  Identities=18%  Similarity=0.338  Sum_probs=65.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC--cceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS--VMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~--~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ..+.++||||+|+++.|++||+.|.+..... ..+..|.+......  +.+.++..+..       ....+...+.++..
T Consensus       210 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~  281 (307)
T 2nru_A          210 EITPKSDIYSFGVVLLEIITGLPAVDEHREP-QLLLDIKEEIEDEEKTIEDYIDKKMND-------ADSTSVEAMYSVAS  281 (307)
T ss_dssp             EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS-SBTTHHHHHHHTTSCCHHHHSCSSCSC-------CCHHHHHHHHHHHH
T ss_pred             CCCccchhHHHHHHHHHHHHCCCCcccCcch-HHHHHHHHHhhhhhhhhhhhccccccc-------cchHHHHHHHHHHH
Confidence            4677899999999999999999997653322 22334444332221  23333433311       12245667889999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.+|++.|++++.
T Consensus       282 ~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          282 QCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             HHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             HHcCCCcccCcCHHHHHHHHHHHhc
Confidence            9999999999999999999998763

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=98.16  E-value=2.3e-06  Score=82.07  Aligned_cols=90  Identities=14%  Similarity=0.294  Sum_probs=58.6

Q ss_pred             CCcceeehhhhhhcccC----------CCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          389 NGDIYNFGIMIMETFTA----------KKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       389 ~~dvysfgilllE~~tg----------k~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      ++||||||+++.||+||          +.|.............+...........-.....         ...++...+.
T Consensus       232 ~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~  302 (337)
T 3mdy_A          232 MADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRW---------SSDECLRQMG  302 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGG---------GGSHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccc---------hhhHHHHHHH
Confidence            48999999999999999          4454433333333333322221111111011100         1235677789


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ++...|.+.+|.+||++.||++.|+.+..
T Consensus       303 ~li~~~l~~dP~~Rps~~ell~~L~~l~~  331 (337)
T 3mdy_A          303 KLMTECWAHNPASRLTALRVKKTLAKMSE  331 (337)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999998865

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=2.7e-06  Score=78.06  Aligned_cols=80  Identities=34%  Similarity=0.468  Sum_probs=50.1

Q ss_pred             CCCCCCCEEEcccCcCcc--ccCccccCCCCCCEEEccCCCCCCCCChhhhCcc--cccEEEecCCcCCCcCc-------
Q 011044          149 SSCKQLRELSLSSNYFSG--TIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLA--ELEMLWLQNNSLTGTIP-------  217 (495)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~-------  217 (495)
                      .++++|+.|+|++|.+++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            356777777887777775  3445556777777777777777643  2233333  67777777777665443       


Q ss_pred             hhhhcCCCCceee
Q 011044          218 SSIFSLSSLLNLD  230 (495)
Q Consensus       218 ~~l~~l~~L~~L~  230 (495)
                      ..+..+|+|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1244566666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=1e-06  Score=75.10  Aligned_cols=83  Identities=12%  Similarity=0.109  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCc-CCccCCccccCC----CCCcEEEccCCc-ccccCChhHhhcCC
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNW-FYGSIPSSIFNM----SSLLSIYFNNNT-LFGELPPNFCNQMS  128 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~~~~~l~  128 (495)
                      .+|++||++++.+++.....+.++++|++|+|++|. +++.--..+..+    ++|++|++++|. +++.--..+. .++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence            357777777777766655666677777777777763 554433334432    245555555553 3322222222 245


Q ss_pred             CCCEEEcccc
Q 011044          129 NLESLFLKYN  138 (495)
Q Consensus       129 ~L~~L~l~~n  138 (495)
                      +|++|++++|
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555544

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.13  E-value=2.7e-07  Score=89.88  Aligned_cols=96  Identities=9%  Similarity=0.023  Sum_probs=65.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|++||+.|...... ......+.+......+.++.++.+..         ..+...+.++..
T Consensus       235 ~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li~  304 (364)
T 3op5_A          235 GVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK-DPKYVRDSKIRYRENIASLMDKCFPA---------ANAPGEIAKYME  304 (364)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT-CHHHHHHHHHHHHHCHHHHHHHHSCT---------TCCCHHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCcccccc-CHHHHHHHHHHhhhhHHHHHHHhccc---------ccCHHHHHHHHH
Confidence            44467789999999999999999999764332 22333444444443433333333211         112344778889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+..+
T Consensus       305 ~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          305 TVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999887653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=2e-06  Score=73.24  Aligned_cols=14  Identities=14%  Similarity=0.252  Sum_probs=5.6

Q ss_pred             cCCCCCCEEEccCC
Q 011044          173 GNLTKLTRLNLRQN  186 (495)
Q Consensus       173 ~~l~~L~~L~L~~n  186 (495)
                      ..+++|++|+|++|
T Consensus        82 ~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           82 EGLQYVEKIRLCKC   95 (176)
T ss_dssp             TTCSCCCEEEEESC
T ss_pred             cCCCCCCEEEeCCC
Confidence            33334444444443

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.03  E-value=1.5e-06  Score=81.13  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      +.+.++|||||||++.||+||+.|..    +..+.....+.......    .+.+          ...+...+.++...|
T Consensus       205 ~y~~~~DiwSlGvilyelltg~~Pf~----~~~~~~~~~~~i~~~~~----~~~~----------~~~~~~~~~~li~~~  266 (290)
T 3fpq_A          205 KYDESVDVYAFGMCMLEMATSEYPYS----ECQNAAQIYRRVTSGVK----PASF----------DKVAIPEVKEIIEGC  266 (290)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTT----TCSSHHHHHHHHTTTCC----CGGG----------GGCCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCC----CCCcHHHHHHHHHcCCC----CCCC----------CccCCHHHHHHHHHH
Confidence            46778999999999999999999953    33333333333222110    0001          001112366788899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.|+++
T Consensus       267 L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          267 IRQNKDERYSIKDLLN  282 (290)
T ss_dssp             SCSSGGGSCCHHHHHT
T ss_pred             ccCChhHCcCHHHHhc
Confidence            9999999999999863

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=98.00  E-value=1.4e-06  Score=82.60  Aligned_cols=87  Identities=20%  Similarity=0.290  Sum_probs=58.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|.+....   ..............     +...          ..+...+.++..
T Consensus       177 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~~---~~~~~~~~~~~~~~-----~~~~----------~~~~~~l~~li~  238 (307)
T 2eva_A          177 GSNYSEKCDVFSWGIILWEVITRRKPFDEIGG---PAFRIMWAVHNGTR-----PPLI----------KNLPKPIESLMT  238 (307)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS---SHHHHHHHHHTTCC-----CCCB----------TTCCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc---cHHHHHHHHhcCCC-----CCcc----------cccCHHHHHHHH
Confidence            44567789999999999999999999754221   11111111111110     0010          011234678899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.++++.|+.+..
T Consensus       239 ~~l~~dp~~Rps~~ell~~L~~~~~  263 (307)
T 2eva_A          239 RCWSKDPSQRPSMEEIVKIMTHLMR  263 (307)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred             HHhcCChhhCcCHHHHHHHHHHHHH
Confidence            9999999999999999999998864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=97.96  E-value=1.7e-06  Score=84.50  Aligned_cols=86  Identities=28%  Similarity=0.497  Sum_probs=58.8

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++||||||+++.|++| |+.|....-.  ..+..++..   .....               ....+...+.++.
T Consensus       289 ~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~--~~~~~~~~~---~~~~~---------------~~~~~~~~l~~li  348 (377)
T 3cbl_A          289 YGRYSSESDVWSFGILLWETFSLGASPYPNLSN--QQTREFVEK---GGRLP---------------CPELCPDAVFRLM  348 (377)
T ss_dssp             HCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH--HHHHHHHHT---TCCCC---------------CCTTCCHHHHHHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc---CCCCC---------------CCCCCCHHHHHHH
Confidence            3456778999999999999999 8888643211  111122211   11000               0112334477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|.+.+|.+||++.++++.|+.++++
T Consensus       349 ~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          349 EQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            999999999999999999999999865

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=97.95  E-value=1.7e-06  Score=83.72  Aligned_cols=96  Identities=7%  Similarity=-0.066  Sum_probs=62.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|..........+..+... +......+.+....         .......+.++..
T Consensus       242 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~l~~li~  311 (352)
T 2jii_A          242 GCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQK-FVDKPGPFVGPCGH---------WIRPSETLQKYLK  311 (352)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHH-HHHSCCCEECTTSC---------EECCCHHHHHHHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHh-ccCChhhhhhhccc---------cCCCcHHHHHHHH
Confidence            3456778999999999999999999976543222222222222 22222222221110         0011234778889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+..+
T Consensus       312 ~~l~~dp~~Rps~~~l~~~L~~~~~~  337 (352)
T 2jii_A          312 VVMALTYEEKPPYAMLRNNLEALLQD  337 (352)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhCChhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=97.95  E-value=1.8e-06  Score=82.66  Aligned_cols=85  Identities=16%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|.+..-.  ..+...+.......                  ....+...+.++.
T Consensus       193 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~li  252 (327)
T 3poz_A          193 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKGERLP------------------QPPICTIDVYMIM  252 (327)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTCCCC------------------CCTTBCHHHHHHH
T ss_pred             cCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHHcCCCCC------------------CCccCCHHHHHHH
Confidence            3456778999999999999999 9999754221  22333332211100                  0112234477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|.+.+|.+||+|.++++.|+.+..
T Consensus       253 ~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          253 VKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             HHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             HHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            99999999999999999999988753

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=97.94  E-value=1.5e-06  Score=82.43  Aligned_cols=86  Identities=15%  Similarity=0.306  Sum_probs=59.6

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCC----CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE----MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~----~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      .....+.++||||||+++.|+++|+.|........    .....+.....+.                      .+...+
T Consensus       195 ~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l  252 (310)
T 3s95_A          195 NGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPP----------------------NCPPSF  252 (310)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCT----------------------TCCTTH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCC----------------------CCCHHH
Confidence            34456778999999999999999998865432211    2222222211110                      112236


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .++...|.+.+|.+||++.++++.|+.++...
T Consensus       253 ~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~  284 (310)
T 3s95_A          253 FPITVRCCDLDPEKRPSFVKLEHWLETLRMHL  284 (310)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence            78899999999999999999999999987653

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=97.93  E-value=1.9e-06  Score=80.97  Aligned_cols=91  Identities=15%  Similarity=0.027  Sum_probs=60.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCC-C-CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG-E-MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~-~-~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ....+.++||||||+++.|++||+.|....-.. . ..+....+.........     +          ...+...+.++
T Consensus       189 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~l  253 (296)
T 3uzp_A          189 GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV-----L----------CKGYPSEFATY  253 (296)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHH-----H----------TTTSCHHHHHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHH-----H----------HhhCCHHHHHH
Confidence            445677899999999999999999997643211 1 12222222222111000     0          00122347788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ...|.+.+|.+||++.++++.|+.+..+
T Consensus       254 i~~~l~~dp~~Rps~~~l~~~l~~~~~~  281 (296)
T 3uzp_A          254 LNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999988654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=97.92  E-value=2.5e-06  Score=78.91  Aligned_cols=81  Identities=14%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCC
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE  467 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~  467 (495)
                      .++||||||+++.|++||+.|...     .+..............    +.+.          ..+...+.++...|...
T Consensus       190 ~~~Di~slG~il~el~~g~~p~~~-----~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~li~~~l~~  250 (271)
T 3kmu_A          190 RSADMWSFAVLLWELVTREVPFAD-----LSNMEIGMKVALEGLR----PTIP----------PGISPHVSKLMKICMNE  250 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHCSCTTTT-----SCHHHHHHHHHHSCCC----CCCC----------TTCCHHHHHHHHHHTCS
T ss_pred             chhhHHHHHHHHHHHHhCCCCccc-----cChHHHHHHHHhcCCC----CCCC----------CCCCHHHHHHHHHHcCC
Confidence            369999999999999999999643     2222222222211110    0010          01123377888899999


Q ss_pred             CccCchhHHHHHHHHHHHHH
Q 011044          468 SPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       468 ~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      +|.+||++.++++.|+.+++
T Consensus       251 ~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          251 DPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             SGGGSCCHHHHHHHHHHHCC
T ss_pred             ChhhCcCHHHHHHHHHHhhc
Confidence            99999999999999998764

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=97.92  E-value=1.4e-06  Score=81.93  Aligned_cols=99  Identities=13%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeecccccc--ccccccchhhHHHHHHHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSW--KDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~--~~~~~~~~~~~~~~~~~~~  461 (495)
                      ...+.++||||||+++.|++||+.|.....      ..+.+..............+...  ..........+...+.++.
T Consensus       192 ~~~~~~~Di~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  265 (295)
T 3ugc_A          192 SKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIM  265 (295)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCTTCSHH------HHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHhcccccCCCh------HHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHH
Confidence            345678999999999999999998864321      11111111110000000000000  0000001113345588899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|...+|.+||++.|++++|+.++.+
T Consensus       266 ~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          266 TECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998764

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=97.89  E-value=5.6e-06  Score=78.40  Aligned_cols=89  Identities=12%  Similarity=0.205  Sum_probs=59.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|...   .......+.+............              ......+.++..
T Consensus       210 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~---~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~li~  272 (310)
T 2wqm_A          210 ENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLCKKIEQCDYPPLPS--------------DHYSEELRQLVN  272 (310)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTC------CCHHHHHHHHHTTCSCCCCT--------------TTSCHHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCcc---cchhHHHHHHHhhcccCCCCcc--------------cccCHHHHHHHH
Confidence            34466789999999999999999999642   2233334433322221110000              011234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.+|++.++.++..
T Consensus       273 ~~l~~dp~~Rps~~~il~~l~~l~~~  298 (310)
T 2wqm_A          273 MCINPDPEKRPDVTYVYDVAKRMHAC  298 (310)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988743

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=97.88  E-value=1.8e-06  Score=80.96  Aligned_cols=88  Identities=20%  Similarity=0.335  Sum_probs=57.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|....    .+.....+.......    .+.+..       ....+...+.++...
T Consensus       200 ~~~~~~~Di~slG~il~el~~g~~p~~~~----~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~l~~li~~  264 (289)
T 3og7_A          200 NPYSFQSDVYAFGIVLYELMTGQLPYSNI----NNRDQIIEMVGRGSL----SPDLSK-------VRSNCPKRMKRLMAE  264 (289)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHSSCTTSSC----CCHHHHHHHHHHTSC----CCCTTS-------SCTTSCHHHHHHHHH
T ss_pred             CCCCcccchHHHHHHHHHHHHCCCCcccc----chHHHHHHHhccccc----Ccchhh-------ccccCCHHHHHHHHH
Confidence            34566899999999999999999996532    122222222111111    000000       011233457889999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      |...+|.+||++.+++++|+++.
T Consensus       265 ~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          265 CLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HccCChhhCCCHHHHHHHHHHHh
Confidence            99999999999999999999875

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=97.88  E-value=6.4e-06  Score=78.08  Aligned_cols=88  Identities=15%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh-CCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL-SISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~-~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++||+.|...     .+-.+.+.... ......     +          ...+...+.++.
T Consensus       213 ~~~~~~~~DiwslG~il~elltg~~Pf~~-----~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li  272 (309)
T 3p86_A          213 DEPSNEKSDVYSFGVILWELATLQQPWGN-----LNPAQVVAAVGFKCKRLE-----I----------PRNLNPQVAAII  272 (309)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHCCCTTTT-----SCHHHHHHHHHHSCCCCC-----C----------CTTSCHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhcCCCCC-----C----------CccCCHHHHHHH
Confidence            34457789999999999999999999643     22222222211 111110     0          001123367889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETRCL  490 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~~~  490 (495)
                      ..|...+|.+||++.++++.|+.+.+...
T Consensus       273 ~~~l~~dP~~Rps~~~ll~~L~~~~~~~~  301 (309)
T 3p86_A          273 EGCWTNEPWKRPSFATIMDLLRPLIKSAV  301 (309)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999998765443

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=97.87  E-value=3.3e-06  Score=79.23  Aligned_cols=92  Identities=15%  Similarity=0.013  Sum_probs=60.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCC--CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE--MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~--~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ....+.++||||||+++.|++||+.|........  ..+........+.....     +          .......+.++
T Consensus       189 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~l  253 (296)
T 4hgt_A          189 GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV-----L----------CKGYPSEFATY  253 (296)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHH-----H----------TTTSCHHHHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhh-----h----------hccCCHHHHHH
Confidence            3446678999999999999999999976432211  11122222111111000     0          00112347788


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      ...|.+.+|.+||++.++++.|+.+..+.
T Consensus       254 i~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          254 LNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887653

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=97.86  E-value=3.6e-06  Score=80.16  Aligned_cols=87  Identities=14%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|........+ +.+.+....+  ..+     +          ...+...+.++..
T Consensus       230 ~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~~~--~~~-----~----------~~~~s~~~~~li~  291 (336)
T 4g3f_A          230 GKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASEPPP--IRE-----I----------PPSCAPLTAQAIQ  291 (336)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHSCCG--GGG-----S----------CTTSCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcCCCC--chh-----c----------CccCCHHHHHHHH
Confidence            34456789999999999999999999754332221 1111111000  000     0          0112233667788


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||++.|+++.+..+..
T Consensus       292 ~~L~~dP~~R~sa~el~~~l~~~l~  316 (336)
T 4g3f_A          292 EGLRKEPVHRASAMELRRKVGKALQ  316 (336)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCCHhHCcCHHHHHHHHHHHHh
Confidence            9999999999999999988876543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=97.83  E-value=4.9e-06  Score=79.06  Aligned_cols=86  Identities=14%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|++||+.|...     .+....+...............              +...+.++...|
T Consensus       219 ~~~~~~Di~slG~il~el~~g~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~li~~~  279 (319)
T 2y4i_B          219 PFSKHSDVFALGTIWYELHAREWPFKT-----QPAEAIIWQMGTGMKPNLSQIG--------------MGKEISDILLFC  279 (319)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSSS-----CCHHHHHHHHHTTCCCCCCCSS--------------CCTTHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHhccCCCCCCCcCC--------------CCHHHHHHHHHH
Confidence            456789999999999999999999643     2222222222221111110000              111267889999


Q ss_pred             CCCCccCchhHHHHHHHHHHHHHHH
Q 011044          465 TVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      ...+|.+||++.+++++|+.++.+.
T Consensus       280 l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          280 WAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             HCSSTTTSCCHHHHHHHHTTC----
T ss_pred             hcCChhhCcCHHHHHHHHHHHHHhh
Confidence            9999999999999999999887653

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=97.82  E-value=2.3e-06  Score=83.54  Aligned_cols=85  Identities=13%  Similarity=0.315  Sum_probs=57.3

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|+++ |+.|....     +-....+........    +           ....+...+.++..
T Consensus       225 ~~~~~~~Dv~SlG~il~ellt~g~~P~~~~-----~~~~~~~~i~~~~~~----~-----------~~~~~~~~l~~li~  284 (373)
T 2qol_A          225 RKFTSASDVWSYGIVLWEVMSYGERPYWEM-----SNQDVIKAVDEGYRL----P-----------PPMDCPAALYQLML  284 (373)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTC-CTTTTC-----CHHHHHHHHHTTEEC----C-----------CCTTCBHHHHHHHH
T ss_pred             CCcCchhcHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCCC----C-----------CCccccHHHHHHHH
Confidence            456778999999999999998 99986432     222222222111000    0           01123345788999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||+|.+|+++|+.+...
T Consensus       285 ~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          285 DCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHhCcChhhCcCHHHHHHHHHHHHhC
Confidence            99999999999999999999988643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=97.82  E-value=3.1e-06  Score=80.42  Aligned_cols=84  Identities=18%  Similarity=0.290  Sum_probs=58.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||||+++.|+++|+.|.+.....+..+...+.......       .           .......+.++...|.
T Consensus       223 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~l~~li~~~l  284 (317)
T 2buj_A          223 IDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIP-------Q-----------SPRHSSALWQLLNSMM  284 (317)
T ss_dssp             ECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CC-------C-----------CTTSCHHHHHHHHHHT
T ss_pred             CCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCC-------c-----------cccCCHHHHHHHHHHh
Confidence            567899999999999999999997654433333333222211000       0           0011234778899999


Q ss_pred             CCCccCchhHHHHHHHHHHHHH
Q 011044          466 VESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..+|.+||++.++++.|+.++.
T Consensus       285 ~~dp~~Rps~~~ll~~L~~~~~  306 (317)
T 2buj_A          285 TVDPHQRPHIPLLLSQLEALQP  306 (317)
T ss_dssp             CSSGGGSCCHHHHHHHHHHTCC
T ss_pred             hcChhhCCCHHHHHHHhhhcCC
Confidence            9999999999999999988753

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.82  E-value=5.7e-06  Score=82.89  Aligned_cols=86  Identities=21%  Similarity=0.379  Sum_probs=60.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|....-.  ..+...+.....   ..               ....+...+.++.
T Consensus       360 ~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~~~~---~~---------------~p~~~~~~l~~li  419 (450)
T 1k9a_A          360 EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVEKGYK---MD---------------APDGCPPAVYDVM  419 (450)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT--TTHHHHHHTTCC---CC---------------CCTTCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCCC---CC---------------CCCcCCHHHHHHH
Confidence            4556788999999999999999 9988653221  222232222111   00               0112334577888


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|...+|.+||++.++++.|+.++..
T Consensus       420 ~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          420 KNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            999999999999999999999998764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=97.81  E-value=3.5e-06  Score=78.84  Aligned_cols=85  Identities=18%  Similarity=0.358  Sum_probs=56.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|+++|+.|.+..-.+.   ..+..........    +.+          ...+...+.++...
T Consensus       203 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~----~~~----------~~~~~~~l~~li~~  265 (287)
T 4f0f_A          203 ESYTEKADTYSFAMILYTILTGEGPFDEYSYGK---IKFINMIREEGLR----PTI----------PEDCPPRLRNVIEL  265 (287)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH---HHHHHHHHHSCCC----CCC----------CTTSCHHHHHHHHH
T ss_pred             CCcCchhhHHHHHHHHHHHHcCCCCCccccccH---HHHHHHHhccCCC----CCC----------CcccCHHHHHHHHH
Confidence            345678999999999999999999975432221   1222221111110    001          01123347788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      |.+.+|.+||++.|+++.|+++
T Consensus       266 ~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          266 CWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHTC
T ss_pred             HhcCChhhCcCHHHHHHHHHhC
Confidence            9999999999999999998753

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=97.81  E-value=2.9e-06  Score=79.81  Aligned_cols=93  Identities=11%  Similarity=-0.055  Sum_probs=59.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|......  ................ ...+.+          ...+...+.++..
T Consensus       192 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~l~~li~  258 (298)
T 1csn_A          192 GREQSRRDDLEALGHVFMYFLRGSLPWQGLKA--ATNKQKYERIGEKKQS-TPLREL----------CAGFPEEFYKYMH  258 (298)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS--CCHHHHHHHHHHHHHH-SCHHHH----------TTTSCHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCcchhhc--cccHHHHHHHHhhccC-ccHHHH----------HhhCcHHHHHHHH
Confidence            34467789999999999999999999754221  1111111111100000 000000          0012334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||++.++++.|+.+..+
T Consensus       259 ~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          259 YARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             HHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCcccCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988765

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=97.78  E-value=5.6e-07  Score=85.81  Aligned_cols=95  Identities=13%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHH-hCCC------cceeeeccccccccccccchhhHHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDL-LSIS------VMEVVDANLLSWKDKHFMTKEQCMSF  456 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~-~~~~------~~~v~d~~l~~~~~~~~~~~~~~~~~  456 (495)
                      ...+.++||||+|+++.|++||+.|......      .+.... ....      ..+.++.....      .....+...
T Consensus       212 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  279 (318)
T 3lxp_A          212 YKFYYASDVWSFGVTLYELLTHCDSSQSPPT------KFLELIGIAQGQMTVLRLTELLERGERL------PRPDKCPAE  279 (318)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHHHHHCSCCHHHHHHHHHHHHHTTCCC------CCCTTCCHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCcccccch------hhhhhhcccccchhHHHHHHHHhcccCC------CCCccccHH
Confidence            3456789999999999999999998653211      110000 0000      00000000000      001123345


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHHHHHHHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQDSQKLETRCL  490 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~~  490 (495)
                      +.++...|.+.+|.+||++.|+++.|+.+.+++-
T Consensus       280 l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  313 (318)
T 3lxp_A          280 VYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ  313 (318)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhc
Confidence            7888999999999999999999999999987764

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=97.77  E-value=3.6e-06  Score=80.43  Aligned_cols=94  Identities=15%  Similarity=0.269  Sum_probs=58.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc--------ceeeeccccccccccccchhhHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV--------MEVVDANLLSWKDKHFMTKEQCMS  455 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~--------~~v~d~~l~~~~~~~~~~~~~~~~  455 (495)
                      ...+.++||||+|+++.|++||+.|.....      ..+.+..-....        .+.+......      .....+..
T Consensus       223 ~~~~~~~Di~slG~il~el~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  290 (326)
T 2w1i_A          223 SKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKNNGRL------PRPDGCPD  290 (326)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHTTCGGGSHH------HHHHHHHCTTCCTHHHHHHHHHHHHTTCCC------CCCTTCCH
T ss_pred             CCCCchhhHHHHHHHHHHHHhcCCCCCCCH------HHHHHhhccccchhhhHHHHHHHhhcCCCC------CCCCcccH
Confidence            345678999999999999999988854211      111111100000        0000000000      00112334


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .+.++...|.+.+|.+||++.|+++.|+.++.+.
T Consensus       291 ~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l  324 (326)
T 2w1i_A          291 EIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM  324 (326)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999998764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=97.77  E-value=9.3e-06  Score=75.14  Aligned_cols=83  Identities=14%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|....     +-.............    ...          ...+...+.++...
T Consensus       189 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~li~~  249 (271)
T 3dtc_A          189 SMFSKGSDVWSYGVLLWELLTGEVPFRGI-----DGLAVAYGVAMNKLA----LPI----------PSTCPEPFAKLMED  249 (271)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHCCCTTTTS-----CHHHHHHHHHTSCCC----CCC----------CTTCCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHhhhcCCCC----CCC----------CcccCHHHHHHHHH
Confidence            34567899999999999999999996431     111111111111100    000          01122347788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      |...+|.+||++.|+++.|+.|
T Consensus       250 ~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          250 CWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHC-
T ss_pred             HhcCCcccCcCHHHHHHHHhcC
Confidence            9999999999999999998754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.74  E-value=9.7e-06  Score=76.15  Aligned_cols=88  Identities=18%  Similarity=0.372  Sum_probs=59.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|++||..|..... ....+..++........                  ...+...+.++..
T Consensus       202 ~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~li~  262 (298)
T 3pls_A          202 TYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHFLAQGRRLPQ------------------PEYCPDSLYQVMQ  262 (298)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CGGGHHHHHHTTCCCCC------------------CTTCCHHHHHHHH
T ss_pred             cCCCChhhchhhHHHHHHHHhhCCCCCCccC-CHHHHHHHhhcCCCCCC------------------CccchHHHHHHHH
Confidence            4456678999999999999999777743211 12233333322211100                  0011234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .|...+|.+||++.+++++|+++..+.
T Consensus       263 ~~l~~~p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          263 QCWEADPAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHHHH
Confidence            999999999999999999999987664

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=97.74  E-value=1.6e-06  Score=83.74  Aligned_cols=93  Identities=9%  Similarity=-0.001  Sum_probs=57.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|.+........+ ...+...............         ....+...+.++...
T Consensus       235 ~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~li~~  304 (345)
T 2v62_A          235 VALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV-QTAKTNLLDELPQSVLKWA---------PSGSSCCEIAQFLVC  304 (345)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH-HHHHHHHHHTTTHHHHHHS---------CTTSCCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH-HHHHHhhcccccHHHHhhc---------cccccHHHHHHHHHH
Confidence            346778999999999999999999975432221111 2222221111110000000         000122347788899


Q ss_pred             cCCCCccCchhHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      |...+|.+||++.++++.|+.+.
T Consensus       305 ~l~~dp~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          305 AHSLAYDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             HHTCCTTCCCCHHHHHHHHCTTC
T ss_pred             HhhcCcccCCCHHHHHHHHhccC
Confidence            99999999999999999997653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=97.73  E-value=8.8e-06  Score=78.75  Aligned_cols=86  Identities=14%  Similarity=0.295  Sum_probs=56.3

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|....... ..+...++.......     +             ..+...+.++..
T Consensus       270 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~-----~-------------~~~~~~l~~li~  330 (359)
T 3vhe_A          270 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMRA-----P-------------DYTTPEMYQTML  330 (359)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTCCCCC-----C-------------TTCCHHHHHHHH
T ss_pred             CCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-HHHHHHHHcCCCCCC-----C-------------CCCCHHHHHHHH
Confidence            445678999999999999999 99986432111 111111111110000     0             011223677889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||++.|+++.|+.+...
T Consensus       331 ~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          331 DCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHccCChhhCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999987653

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=97.72  E-value=5.2e-06  Score=83.69  Aligned_cols=93  Identities=14%  Similarity=0.069  Sum_probs=59.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.|+++|+.|.......  .....+............+ .+          ...+...+.++..
T Consensus       187 ~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~--~~~~~~~~i~~~~~~~~~~-~l----------~~~~p~~l~~li~  253 (483)
T 3sv0_A          187 GIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG--TKKQKYEKISEKKVATSIE-AL----------CRGYPTEFASYFH  253 (483)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS--SHHHHHHHHHHHHHHSCHH-HH----------HTTSCHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCCCCccccch--hHHHHHHHHhhccccccHH-HH----------hcCCcHHHHHHHH
Confidence            345677899999999999999999997643221  2222221111111000000 00          0112345788999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+..+
T Consensus       254 ~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          254 YCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCChhhCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999887543

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=97.72  E-value=1.1e-05  Score=77.28  Aligned_cols=97  Identities=11%  Similarity=0.030  Sum_probs=58.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCC-------------CCHHHHHHHHhCCCcceeeeccccccccccccchh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE-------------MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKE  451 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~-------------~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~  451 (495)
                      ..+.++||||||+++.|++||+.|........             .....+ ........   ..+.+-..    .....
T Consensus       211 ~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~----~~~~~  282 (336)
T 3g2f_A          211 SALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDM-QVLVSREK---QRPKFPEA----WKENS  282 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHH-HHHHTTSC---CCCCCCTT----CCCCS
T ss_pred             ccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHH-Hhhhcccc---cCCCCCcc----ccccc
Confidence            45568999999999999999987743211100             011111 11111000   00111000    00112


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .+...+.++...|...+|.+||++.||++.|+.+...+
T Consensus       283 ~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          283 LAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             HHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence            34556889999999999999999999999999887544

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=97.72  E-value=1.4e-05  Score=76.37  Aligned_cols=87  Identities=15%  Similarity=0.286  Sum_probs=57.8

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|...... ...+...++......     .+.             .+...+.++..
T Consensus       241 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~-----~~~-------------~~~~~l~~li~  301 (333)
T 2i1m_A          241 CVYTVQSDVWSYGILLWEIFSLGLNPYPGILV-NSKFYKLVKDGYQMA-----QPA-------------FAPKNIYSIMQ  301 (333)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS-SHHHHHHHHHTCCCC-----CCT-------------TCCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCCCCCcccch-hHHHHHHHhcCCCCC-----CCC-------------CCCHHHHHHHH
Confidence            345678999999999999999 8888643221 111222222211110     000             11234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .|.+.+|.+||++.|+++.|+.+....
T Consensus       302 ~~l~~~p~~Rps~~~l~~~L~~~~~~~  328 (333)
T 2i1m_A          302 ACWALEPTHRPTFQQICSFLQEQAQED  328 (333)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHhccChhhCcCHHHHHHHHHHHHHhh
Confidence            999999999999999999999876543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=97.72  E-value=1.4e-05  Score=76.20  Aligned_cols=84  Identities=14%  Similarity=0.279  Sum_probs=57.7

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|+++ |+.|....     .-...+..........     .          ...+...+.++..
T Consensus       229 ~~~~~~~Di~slG~il~ell~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~  288 (325)
T 3kul_A          229 RTFSSASDVWSFGVVMWEVLAYGERPYWNM-----TNRDVISSVEEGYRLP-----A----------PMGCPHALHQLML  288 (325)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCTTTTS-----CHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCcccC-----CHHHHHHHHHcCCCCC-----C----------CCCcCHHHHHHHH
Confidence            446678999999999999999 99986432     2222222222211000     0          0122334778999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.++++.|+.+..
T Consensus       289 ~~l~~dp~~Rps~~eil~~L~~l~~  313 (325)
T 3kul_A          289 DCWHKDRAQRPRFSQIVSVLDALIR  313 (325)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=97.71  E-value=1.3e-05  Score=74.15  Aligned_cols=85  Identities=24%  Similarity=0.377  Sum_probs=57.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|.+.     .+-............  ...+..             ....+.++..
T Consensus       180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~-----~~~~~~~~~~~~~~~--~~~~~~-------------~~~~l~~li~  239 (268)
T 3sxs_A          180 FKYSSKSDVWAFGILMWEVFSLGKMPYDL-----YTNSEVVLKVSQGHR--LYRPHL-------------ASDTIYQIMY  239 (268)
T ss_dssp             SEEETTHHHHHHHHHHHHHHTTTCCTTTT-----SCHHHHHHHHHTTCC--CCCCTT-------------SCHHHHHHHH
T ss_pred             cCCchhhhhHHHHHHHHHHHcCCCCCccc-----cChHHHHHHHHcCCC--CCCCCc-------------ChHHHHHHHH
Confidence            346778999999999999999 8888643     122222222222110  001111             1123778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||++.|+++.|+.++++
T Consensus       240 ~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          240 SCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             HHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            99999999999999999999887643

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=97.71  E-value=1.2e-05  Score=78.66  Aligned_cols=85  Identities=18%  Similarity=0.395  Sum_probs=58.8

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|...     .+...+++..........               ...+...+.++.
T Consensus       267 ~~~~~~~~DiwslG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li  326 (382)
T 3tt0_A          267 DRIYTHQSDVWSFGVLLWEIFTLGGSPYPG-----VPVEELFKLLKEGHRMDK---------------PSNCTNELYMMM  326 (382)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHTTCCCCC---------------CSSCCHHHHHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCCC---------------CccCCHHHHHHH
Confidence            3456778999999999999999 8888542     233333333322211110               001223477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|.+.+|.+||++.||++.|+.+..
T Consensus       327 ~~~l~~dP~~Rps~~ell~~L~~~~~  352 (382)
T 3tt0_A          327 RDCWHAVPSQRPTFKQLVEDLDRIVA  352 (382)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            99999999999999999999998764

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.70  E-value=1.8e-05  Score=73.18  Aligned_cols=85  Identities=20%  Similarity=0.391  Sum_probs=57.9

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|.+.     .+....+........  ...+.             .....+.++..
T Consensus       182 ~~~~~~~Di~slG~~l~~ll~~g~~p~~~-----~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~li~  241 (269)
T 4hcu_A          182 SRYSSKSDVWSFGVLMWEVFSEGKIPYEN-----RSNSEVVEDISTGFR--LYKPR-------------LASTHVYQIMN  241 (269)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCC--CCCCT-------------TSCHHHHHHHH
T ss_pred             CCCCchhhhHHHHHHHHHHhcCCCCCCCC-----CCHHHHHHHHhcCcc--CCCCC-------------cCCHHHHHHHH
Confidence            345678999999999999999 8888543     222233332222110  00111             11223678889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|++++++
T Consensus       242 ~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          242 HCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHccCCcccCcCHHHHHHHHHHHHHc
Confidence            99999999999999999999998764

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=97.69  E-value=1.1e-05  Score=78.50  Aligned_cols=85  Identities=20%  Similarity=0.404  Sum_probs=57.2

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|||||||++.||+| |+.|....-  ...+...+..   .....     .          ...+...+.++.
T Consensus       279 ~~~~~~~~DvwslG~il~ellt~g~~p~~~~~--~~~~~~~~~~---~~~~~-----~----------~~~~~~~l~~li  338 (370)
T 2psq_A          279 DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VEELFKLLKE---GHRMD-----K----------PANCTNELYMMM  338 (370)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHT---TCCCC-----C----------CTTSCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHhc---CCCCC-----C----------CCCCCHHHHHHH
Confidence            3446678999999999999999 888864321  1122222211   11000     0          012233477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|...+|.+||++.|+++.|+.+..
T Consensus       339 ~~~l~~dP~~Rpt~~ell~~L~~il~  364 (370)
T 2psq_A          339 RDCWHAVPSQRPTFKQLVEDLDRILT  364 (370)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            99999999999999999999998764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=97.69  E-value=1.2e-05  Score=77.22  Aligned_cols=86  Identities=19%  Similarity=0.344  Sum_probs=58.3

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|...     .+................               ...+...+.++..
T Consensus       251 ~~~~~~~Di~slG~il~el~t~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li~  310 (343)
T 1luf_A          251 NRYTTESDVWAYGVVLWEIFSYGLQPYYG-----MAHEEVIYYVRDGNILAC---------------PENCPLELYNLMR  310 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCTTTT-----SCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred             CCcCcccccHHHHHHHHHHHhcCCCcCCC-----CChHHHHHHHhCCCcCCC---------------CCCCCHHHHHHHH
Confidence            346678999999999999999 8888642     222233332222211100               0112334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .|...+|.+||++.++++.|+.+..++
T Consensus       311 ~~l~~~p~~Rps~~~~~~~L~~~~~~~  337 (343)
T 1luf_A          311 LCWSKLPADRPSFCSIHRILQRMCERA  337 (343)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred             HHcccCcccCCCHHHHHHHHHHHHhhh
Confidence            999999999999999999999887654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=97.69  E-value=1e-05  Score=75.16  Aligned_cols=86  Identities=19%  Similarity=0.342  Sum_probs=58.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|....     +....+........     ...          ...+...+.++..
T Consensus       189 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~----------~~~~~~~l~~li~  248 (278)
T 1byg_A          189 KKFSTKSDVWSFGILLWEIYSFGRVPYPRI-----PLKDVVPRVEKGYK-----MDA----------PDGCPPAVYEVMK  248 (278)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSCTTS-----CGGGHHHHHTTTCC-----CCC----------CTTCCHHHHHHHH
T ss_pred             CCCCchhcHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHhcCCC-----CCC----------cccCCHHHHHHHH
Confidence            345678999999999999998 88886432     11122221111110     000          0112334778889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      .|...+|.+||++.|+++.|+.++..-
T Consensus       249 ~~l~~~p~~Rps~~~l~~~L~~i~~~~  275 (278)
T 1byg_A          249 NCWHLDAAMRPSFLQLREQLEHIKTHE  275 (278)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence            999999999999999999999998653

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=97.69  E-value=1.1e-05  Score=80.86  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=57.1

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++|||||||++.|++| |+.|...     .+....++.........               ....+...+.++..
T Consensus       360 ~~~~~~~DvwslG~~l~el~t~g~~P~~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~li~  419 (454)
T 1qcf_A          360 GSFTIKSDVWSFGILLMEIVTYGRIPYPG-----MSNPEVIRALERGYRMP---------------RPENCPEELYNIMM  419 (454)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHHTCCCC---------------CCTTSCHHHHHHHH
T ss_pred             CCCCcHHHHHhHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCCCCCHHHHHHHH
Confidence            456778999999999999999 9888643     22222222211111000               01123345778999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|...+|.+||+|.++++.|+.+.
T Consensus       420 ~cl~~dp~~RPt~~~i~~~L~~~~  443 (454)
T 1qcf_A          420 RCWKNRPEERPTFEYIQSVLDDFY  443 (454)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             HHccCChhHCcCHHHHHHHHHHHH
Confidence            999999999999999999998764

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=97.68  E-value=2e-05  Score=74.56  Aligned_cols=85  Identities=16%  Similarity=0.314  Sum_probs=57.2

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|.....  ...+...+.   ......     .          ...+...+.++..
T Consensus       224 ~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~---~~~~~~-----~----------~~~~~~~l~~li~  283 (313)
T 3brb_A          224 RVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ--NHEMYDYLL---HGHRLK-----Q----------PEDCLDELYEIMY  283 (313)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHH---TTCCCC-----C----------BTTCCHHHHHHHH
T ss_pred             CCccchhhhHHHHHHHHHHHhcCCCCCccCC--HHHHHHHHH---cCCCCC-----C----------CccccHHHHHHHH
Confidence            445678999999999999999 777754321  112222221   111000     0          0112334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+..+
T Consensus       284 ~~l~~dp~~Rps~~~l~~~L~~l~~~  309 (313)
T 3brb_A          284 SCWRTDPLDRPTFSVLRLQLEKLLES  309 (313)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999988754

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=97.67  E-value=1.7e-05  Score=75.67  Aligned_cols=83  Identities=13%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++||||||+++.|++| |+.|......  ..+...+.......     .+.             .+...+.++..
T Consensus       192 ~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~~~~-----~~~-------------~~~~~~~~li~  251 (325)
T 3kex_A          192 GKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLEKGERLA-----QPQ-------------ICTIDVYMVMV  251 (325)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHHTTCBCC-----CCT-------------TBCTTTTHHHH
T ss_pred             CCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHHcCCCCC-----CCC-------------cCcHHHHHHHH
Confidence            345678999999999999999 9999654221  22223322211100     000             01112567888


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|...+|.+||++.++++.|+.+.
T Consensus       252 ~~l~~dp~~Rps~~el~~~l~~~~  275 (325)
T 3kex_A          252 KCWMIDENIRPTFKELANEFTRMA  275 (325)
T ss_dssp             HHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHH
Confidence            999999999999999999998875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=97.67  E-value=2.3e-05  Score=72.93  Aligned_cols=85  Identities=14%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|.....  ...+...+........     +             ..+...+.++..
T Consensus       189 ~~~~~~~Di~slG~il~~llt~g~~p~~~~~--~~~~~~~~~~~~~~~~-----~-------------~~~~~~l~~li~  248 (281)
T 3cc6_A          189 RRFTTASDVWMFAVCMWEILSFGKQPFFWLE--NKDVIGVLEKGDRLPK-----P-------------DLCPPVLYTLMT  248 (281)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--GGGHHHHHHHTCCCCC-----C-------------TTCCHHHHHHHH
T ss_pred             CCCCchhccHHHHHHHHHHHhCCCCCcccCC--hHHHHHHHhcCCCCCC-----C-------------CCCCHHHHHHHH
Confidence            345678999999999999999 999964321  1222222222111000     0             011233778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.|+++.|+.+...
T Consensus       249 ~~l~~~p~~Rps~~ell~~L~~~~~~  274 (281)
T 3cc6_A          249 RCWDYDPSDRPRFTELVCSLSDVYQM  274 (281)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHccCCchhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999987654

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=97.66  E-value=1.7e-05  Score=75.82  Aligned_cols=84  Identities=17%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|.+..-.  ..+...+........                  ...+...+.++..
T Consensus       194 ~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~l~~li~  253 (327)
T 3lzb_A          194 RIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEKGERLPQ------------------PPICTIDVYMIMR  253 (327)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTCCCCC------------------CTTBCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHcCCCCCC------------------CccCCHHHHHHHH
Confidence            345678999999999999999 9999654221  223333322111000                  0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.|+++.|+.+..
T Consensus       254 ~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          254 KCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             HHcCCChhHCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998763

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=97.66  E-value=1.2e-05  Score=83.79  Aligned_cols=86  Identities=14%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.|++| |+.|....-  ...+...+..   .....               ....+...+.++.
T Consensus       513 ~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~~---~~~~~---------------~p~~~~~~l~~li  572 (613)
T 2ozo_A          513 FRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQ---GKRME---------------CPPECPPELYALM  572 (613)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--SHHHHHHHHT---TCCCC---------------CCTTCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHc---CCCCC---------------CCCcCCHHHHHHH
Confidence            3556778999999999999998 999965321  1122222221   11000               0112344578899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|...+|.+||+|.++++.|+.+-..
T Consensus       573 ~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          573 SDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             HHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999876543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.66  E-value=1.9e-05  Score=73.60  Aligned_cols=84  Identities=17%  Similarity=0.335  Sum_probs=56.5

Q ss_pred             cccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++||||+|+++.|+++ |+.|......  ..+...+.....   ..     +          ...+...+.++...
T Consensus       193 ~~~~~~Di~slG~~l~ell~~g~~pf~~~~~--~~~~~~i~~~~~---~~-----~----------~~~~~~~l~~li~~  252 (281)
T 1mp8_A          193 RFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGRIENGER---LP-----M----------PPNCPPTLYSLMTK  252 (281)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHTTCC---CC-----C----------CTTCCHHHHHHHHH
T ss_pred             CCCCccCchHHHHHHHHHHhcCCCCCCcCCH--HHHHHHHHcCCC---CC-----C----------CCCCCHHHHHHHHH
Confidence            45668999999999999997 8888653221  122222221110   00     0          01122347788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      |...+|.+||++.|+++.|+.+...
T Consensus       253 ~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          253 CWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HccCChhhCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999987643

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=97.66  E-value=1.8e-05  Score=74.84  Aligned_cols=86  Identities=14%  Similarity=0.337  Sum_probs=56.9

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|...... ...+...++.....    ...              ......+.++..
T Consensus       222 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~----~~~--------------~~~~~~l~~li~  282 (313)
T 1t46_A          222 CVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-DSKFYKMIKEGFRM----LSP--------------EHAPAEMYDIMK  282 (313)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-SHHHHHHHHHTCCC----CCC--------------TTSCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHhCCCCCCCcccc-hhHHHHHhccCCCC----CCc--------------ccCCHHHHHHHH
Confidence            346678999999999999999 8888643221 11111222211110    000              012234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.|+++.|+.+-..
T Consensus       283 ~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          283 TCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999987654

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=97.65  E-value=1.9e-05  Score=73.83  Aligned_cols=86  Identities=17%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|...     .+-...+..........    ..          ...+...+.++..
T Consensus       199 ~~~~~~~Di~slG~il~~l~~~g~~p~~~-----~~~~~~~~~~~~~~~~~----~~----------~~~~~~~l~~li~  259 (291)
T 1u46_A          199 RTFSHASDTWMFGVTLWEMFTYGQEPWIG-----LNGSQILHKIDKEGERL----PR----------PEDCPQDIYNVMV  259 (291)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTSCCCC----CC----------CTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCccc-----CCHHHHHHHHHccCCCC----CC----------CcCcCHHHHHHHH
Confidence            345678999999999999999 8888643     22333333332221100    00          0112334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+++...
T Consensus       260 ~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          260 QCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             HHccCCcccCcCHHHHHHHHHHhCcc
Confidence            99999999999999999999887643

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=97.65  E-value=1.3e-05  Score=75.38  Aligned_cols=87  Identities=14%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||..|...... ...+...+.......     .+             ..+...+.++...
T Consensus       207 ~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-------------~~~~~~l~~li~~  267 (298)
T 3f66_A          207 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDITVYLLQGRRLL-----QP-------------EYCPDPLYEVMLK  267 (298)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC-TTTHHHHHHTTCCCC-----CC-------------TTCCHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHhCCCCCCccCC-HHHHHHHHhcCCCCC-----CC-------------ccCCHHHHHHHHH
Confidence            3456789999999999999996665322111 122222222111100     00             0112347788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      |.+.+|.+||++.|++++|+++...+
T Consensus       268 ~l~~~p~~Rps~~ell~~L~~~~~~~  293 (298)
T 3f66_A          268 CWHPKAEMRPSFSELVSRISAIFSTF  293 (298)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred             HcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999999887543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.64  E-value=1.1e-05  Score=81.73  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=56.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.|++| |+.|....-  ...+.+.+.......                  ....+...+.++.
T Consensus       393 ~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~l~~li  452 (495)
T 1opk_A          393 YNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDYRME------------------RPEGCPEKVYELM  452 (495)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCC------------------CCTTCCHHHHHHH
T ss_pred             cCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCCCC------------------CCCCCCHHHHHHH
Confidence            3456778999999999999999 888864321  112223222211100                  0112334577889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|...+|.+||+|.++++.|+.+
T Consensus       453 ~~cl~~dP~~RPs~~el~~~L~~~  476 (495)
T 1opk_A          453 RACWQWNPSDRPSFAEIHQAFETM  476 (495)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             HHHcCcChhHCcCHHHHHHHHHHH
Confidence            999999999999999999999865

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=97.63  E-value=1.9e-05  Score=76.89  Aligned_cols=86  Identities=13%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             CccccCCCcceeehhhhhhcccCC-CCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAK-KPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk-~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++||. .|....  ....+...+......     ..+             ..+...+.++.
T Consensus       270 ~~~~~~~~DvwSlG~il~ellt~~~~p~~~~--~~~~~~~~~~~~~~~-----~~p-------------~~~~~~l~~li  329 (373)
T 3c1x_A          270 TQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGRRL-----LQP-------------EYCPDPLYEVM  329 (373)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CSSCHHHHHHTTCCC-----CCC-------------TTCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC--CHHHHHHHHHcCCCC-----CCC-------------CCCCHHHHHHH
Confidence            345667899999999999999954 454321  122333333221100     001             11233477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ..|...+|.+||++.|+++.|+.+...
T Consensus       330 ~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          330 LKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            999999999999999999999988654

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=97.62  E-value=2.6e-05  Score=75.82  Aligned_cols=84  Identities=17%  Similarity=0.313  Sum_probs=57.5

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++|||||||++.|++| |+.|...     .+....++..........               ...+...+.++..
T Consensus       261 ~~~~~~~DvwslG~il~ellt~g~~pf~~-----~~~~~~~~~i~~~~~~~~---------------~~~~~~~l~~li~  320 (367)
T 3l9p_A          261 GIFTSKTDTWSFGVLLWEIFSLGYMPYPS-----KSNQEVLEFVTSGGRMDP---------------PKNCPGPVYRIMT  320 (367)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCCC---------------CccCCHHHHHHHH
Confidence            345678999999999999998 8888542     222233332222211100               0122334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||++.++++.|+.+..
T Consensus       321 ~~l~~dP~~Rps~~eil~~l~~~~~  345 (367)
T 3l9p_A          321 QCWQHQPEDRPNFAIILERIEYCTQ  345 (367)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHHHHHHhh
Confidence            9999999999999999999988764

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.62  E-value=3e-05  Score=71.41  Aligned_cols=85  Identities=20%  Similarity=0.395  Sum_probs=57.5

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|...     .+....+.........  ..+.             .....+.++..
T Consensus       180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~-----~~~~~~~~~i~~~~~~--~~~~-------------~~~~~l~~li~  239 (267)
T 3t9t_A          180 SRYSSKSDVWSFGVLMWEVFSEGKIPYEN-----RSNSEVVEDISTGFRL--YKPR-------------LASTHVYQIMN  239 (267)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCCC--CCCT-------------TSCHHHHHHHH
T ss_pred             CCccchhchhhhHHHHHHHhccCCCCCCC-----CCHHHHHHHHhcCCcC--CCCc-------------cCcHHHHHHHH
Confidence            345678999999999999999 7888542     2222333322221100  0011             11233678899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+.++
T Consensus       240 ~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          240 HCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHhc
Confidence            99999999999999999999998753

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=97.61  E-value=1.9e-05  Score=74.81  Aligned_cols=84  Identities=18%  Similarity=0.342  Sum_probs=57.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|......  ..+...++......        .          ...+...+.++..
T Consensus       227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--~~~~~~~~~~~~~~--------~----------~~~~~~~~~~li~  286 (314)
T 2ivs_A          227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP--ERLFNLLKTGHRME--------R----------PDNCSEEMYRLML  286 (314)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHHTTCCCC--------C----------CTTCCHHHHHHHH
T ss_pred             CCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHhhcCCcCC--------C----------CccCCHHHHHHHH
Confidence            446778999999999999999 8888643211  12222222111100        0          0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||++.|+++.|+.+..
T Consensus       287 ~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          287 QCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998754

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.60  E-value=2.5e-05  Score=74.34  Aligned_cols=83  Identities=17%  Similarity=0.379  Sum_probs=56.0

Q ss_pred             cccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++||||||+++.|++| |+.|....-  ...+...+   .......               ....+...+.++...
T Consensus       215 ~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~---~~~~~~~---------------~~~~~~~~l~~li~~  274 (323)
T 3qup_A          215 LYTVHSDVWAFGVTMWEIMTRGQTPYAGIE--NAEIYNYL---IGGNRLK---------------QPPECMEEVYDLMYQ  274 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHH---HTTCCCC---------------CCTTCCHHHHHHHHH
T ss_pred             CCCCccchhhHHHHHHHHHhCCCCCccccC--hHHHHHHH---hcCCCCC---------------CCCccCHHHHHHHHH
Confidence            45678999999999999999 888864321  11222221   1111000               001122347789999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      |...+|.+||++.++++.|+++..
T Consensus       275 ~l~~dp~~Rps~~~l~~~l~~~l~  298 (323)
T 3qup_A          275 CWSADPKQRPSFTCLRMELENILG  298 (323)
T ss_dssp             TTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HccCChhhCcCHHHHHHHHHHHHH
Confidence            999999999999999999998753

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=97.60  E-value=2.5e-05  Score=74.79  Aligned_cols=84  Identities=19%  Similarity=0.394  Sum_probs=57.6

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|...     .+.....+.........     .          ...+...+.++..
T Consensus       234 ~~~~~~~Di~slG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~  293 (334)
T 2pvf_A          234 RVYTHQSDVWSFGVLMWEIFTLGGSPYPG-----IPVEELFKLLKEGHRMD-----K----------PANCTNELYMMMR  293 (334)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHHTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHHHhCCCCCcCc-----CCHHHHHHHHhcCCCCC-----C----------CccCCHHHHHHHH
Confidence            446778999999999999999 8888542     23333332222111000     0          0012234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.|+++.|+.+..
T Consensus       294 ~~l~~dp~~Rps~~ell~~L~~l~~  318 (334)
T 2pvf_A          294 DCWHAVPSQRPTFKQLVEDLDRILT  318 (334)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998764

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=97.59  E-value=3e-05  Score=71.99  Aligned_cols=85  Identities=25%  Similarity=0.350  Sum_probs=57.4

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++||||+|+++.|++| |+.|...     .+-....+........ . .+             ..+...+.++..
T Consensus       185 ~~~~~~~Di~slG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~-~-~~-------------~~~~~~l~~li~  244 (279)
T 1qpc_A          185 GTFTIKSDVWSFGILLTEIVTHGRIPYPG-----MTNPEVIQNLERGYRM-V-RP-------------DNCPEELYQLMR  244 (279)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTTCCSSTT-----CCHHHHHHHHHTTCCC-C-CC-------------TTCCHHHHHHHH
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCCCcc-----cCHHHHHHHHhcccCC-C-Cc-------------ccccHHHHHHHH
Confidence            445678999999999999999 8888542     2222332222211100 0 00             012234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+...
T Consensus       245 ~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          245 LCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHhccChhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999987654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=97.59  E-value=1.9e-05  Score=75.41  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=52.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|.+...     ....+........                  ...+...+.++...
T Consensus       228 ~~~~~~~Dv~slG~il~el~~g~~p~~~~~-----~~~~~~~~~~~~~------------------~~~~~~~~~~li~~  284 (337)
T 3ll6_A          228 FPIGEKQDIWALGCILYLLCFRQHPFEDGA-----KLRIVNGKYSIPP------------------HDTQYTVFHSLIRA  284 (337)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHSSCCC-----------------CCCCT------------------TCCSSGGGHHHHHH
T ss_pred             CCCChHHhHHHHHHHHHHHHhCCCCCcchh-----HHHhhcCcccCCc------------------ccccchHHHHHHHH
Confidence            345678999999999999999999964311     1111111111000                  00011125678899


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      |.+.+|.+||++.|+++.|+.+...
T Consensus       285 ~l~~~p~~Rps~~e~l~~l~~~~~~  309 (337)
T 3ll6_A          285 MLQVNPEERLSIAEVVHQLQEIAAA  309 (337)
T ss_dssp             HSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HccCChhhCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999988653

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.58  E-value=2.5e-05  Score=72.95  Aligned_cols=85  Identities=14%  Similarity=0.264  Sum_probs=57.6

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|.....  ...+...+.   ......     .          ...+...+.++..
T Consensus       188 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~i~---~~~~~~-----~----------~~~~~~~l~~li~  247 (287)
T 1u59_A          188 RKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIE---QGKRME-----C----------PPECPPELYALMS  247 (287)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHH---TTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHh---cCCcCC-----C----------CCCcCHHHHHHHH
Confidence            446678999999999999999 999964321  112222222   111000     0          0112334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+...
T Consensus       248 ~~l~~~p~~Rps~~~l~~~l~~~~~~  273 (287)
T 1u59_A          248 DCWIYKWEDRPDFLTVEQRMRACYYS  273 (287)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999887644

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=97.58  E-value=2.7e-05  Score=72.89  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=56.3

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|++| |+.|....     +-....+.........     .          ...+...+.++..
T Consensus       195 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~  254 (291)
T 1xbb_A          195 YKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-----KGSEVTAMLEKGERMG-----C----------PAGCPREMYDLMN  254 (291)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCChhhhHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CCCCCHHHHHHHH
Confidence            345678999999999999999 99986432     2122222111111000     0          0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.++++.|+.+-.
T Consensus       255 ~~l~~dp~~Rps~~~l~~~L~~~~~  279 (291)
T 1xbb_A          255 LCWTYDVENRPGFAAVELRLRNYYY  279 (291)
T ss_dssp             HHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHH
Confidence            9999999999999999999987643

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.57  E-value=3.8e-05  Score=73.51  Aligned_cols=85  Identities=19%  Similarity=0.334  Sum_probs=57.4

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++||||||+++.|++| |+.|...     .+-...++.........     .          ...+...+.++.
T Consensus       224 ~~~~~~~~Di~slG~il~ellt~g~~pf~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li  283 (333)
T 1mqb_A          224 YRKFTSASDVWSFGIVMWEVMTYGERPYWE-----LSNHEVMKAINDGFRLP-----T----------PMDCPSAIYQLM  283 (333)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCCCC-----C----------CTTCBHHHHHHH
T ss_pred             cCCCCchhhhHHHHHHHHHHHcCCCCCccc-----CCHHHHHHHHHCCCcCC-----C----------cccCCHHHHHHH
Confidence            3446678999999999999999 9988642     12222222222111000     0          011233477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|.+.+|.+||++.++++.|+.+..
T Consensus       284 ~~~l~~~p~~Rps~~~l~~~L~~~~~  309 (333)
T 1mqb_A          284 MQCWQQERARRPKFADIVSILDKLIR  309 (333)
T ss_dssp             HHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            99999999999999999999988754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=97.56  E-value=1.2e-05  Score=74.89  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=54.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|....       ..+...........                  .....+.++...
T Consensus       196 ~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~~~~~~~~~~------------------~~~~~~~~li~~  250 (284)
T 2a19_B          196 QDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFTDLRDGIISD------------------IFDKKEKTLLQK  250 (284)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHHHHHTTCCCT------------------TSCHHHHHHHHH
T ss_pred             CCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHHHhhcccccc------------------cCCHHHHHHHHH
Confidence            34577899999999999999998874321       12222211111100                  011225678889


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHHHHHh
Q 011044          464 CTVESPIRESTQRKLLQDSQKLETRCLK  491 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~~~~~  491 (495)
                      |...+|.+||++.|+++.++.++...-+
T Consensus       251 ~l~~dp~~Rps~~e~l~~l~~~~~~~~~  278 (284)
T 2a19_B          251 LLSKKPEDRPNTSEILRTLTVWKKSPEK  278 (284)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred             HccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence            9999999999999999999988765443

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=97.56  E-value=1.4e-05  Score=76.44  Aligned_cols=92  Identities=14%  Similarity=-0.009  Sum_probs=59.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|....-  ...+...++......... ....+          ...+. .+.++..
T Consensus       191 ~~~~~~~~Di~slG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~~~~~~~-~~~~~----------~~~~p-~~~~li~  256 (330)
T 2izr_A          191 GKEQSRRDDLEALGHMFMYFLRGSLPWQGLK--ADTLKERYQKIGDTKRAT-PIEVL----------CENFP-EMATYLR  256 (330)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--CSSHHHHHHHHHHHHHHS-CHHHH----------TTTCH-HHHHHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCCccccc--cccHHHHHHHHHhhhccC-CHHHH----------hccCh-HHHHHHH
Confidence            3445678999999999999999999975432  122322222211100000 00000          01122 6888999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.++.+..+
T Consensus       257 ~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          257 YVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             HHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999887654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=97.55  E-value=2.5e-05  Score=78.26  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++||||||+++.|++| |+.|...     ......+..........               ....+...+.++.
T Consensus       355 ~~~~~~~sDvwslG~~l~el~t~g~~P~~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~li  414 (452)
T 1fmk_A          355 YGRFTIKSDVWSFGILLTELTTKGRVPYPG-----MVNREVLDQVERGYRMP---------------CPPECPESLHDLM  414 (452)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSSTT-----CCHHHHHHHHHTTCCCC---------------CCTTSCHHHHHHH
T ss_pred             cCCCCccccHHhHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCCCCCHHHHHHH
Confidence            3456778999999999999999 8888542     22222222221111000               0112334577889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..|...+|.+||++.++++.|+.+.
T Consensus       415 ~~cl~~dP~~Rpt~~~l~~~L~~~~  439 (452)
T 1fmk_A          415 CQCWRKEPEERPTFEYLQAFLEDYF  439 (452)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHh
Confidence            9999999999999999999998764

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.55  E-value=2.6e-05  Score=72.98  Aligned_cols=78  Identities=18%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+|+++.|++||+.|...    ..+...+.+...........+              ......+.++...|
T Consensus       205 ~~~~~~Di~slG~~l~~l~~g~~pf~~----~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~li~~~  266 (290)
T 1t4h_A          205 KYDESVDVYAFGMCMLEMATSEYPYSE----CQNAAQIYRRVTSGVKPASFD--------------KVAIPEVKEIIEGC  266 (290)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTTT----CSSHHHHHHHHTTTCCCGGGG--------------GCCCHHHHHHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHHhCCCCCCC----cCcHHHHHHHHhccCCccccC--------------CCCCHHHHHHHHHH
Confidence            466789999999999999999999643    233334443332221100000              01123377889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       267 l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          267 IRQNKDERYSIKDLLN  282 (290)
T ss_dssp             SCSSGGGSCCHHHHHT
T ss_pred             ccCChhhCCCHHHHhh
Confidence            9999999999999864

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=97.55  E-value=1.7e-05  Score=75.72  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCC---------CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG---------EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM  454 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~---------~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~  454 (495)
                      ...+.++||||+|+++.|++||+.|......+         .......+.......        ...      .....+.
T Consensus       205 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~~  270 (327)
T 3lxl_A          205 NIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEG--------QRL------PAPPACP  270 (327)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTT--------CCC------CCCTTCC
T ss_pred             CCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcc--------cCC------CCCCccc
Confidence            34567899999999999999999985432110         000001111111000        000      0011233


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..+.++...|.+.+|.+||++.|+++.|+.+.
T Consensus       271 ~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  302 (327)
T 3lxl_A          271 AEVHELMKLCWAPSPQDRPSFSALGPQLDMLW  302 (327)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            45788999999999999999999999998764

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=97.55  E-value=2.3e-05  Score=74.22  Aligned_cols=86  Identities=15%  Similarity=0.293  Sum_probs=56.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|....... ..+...+..   .....     ..          ......+.++..
T Consensus       225 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~~~~~~~---~~~~~-----~~----------~~~~~~l~~li~  285 (316)
T 2xir_A          225 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKE---GTRMR-----AP----------DYTTPEMYQTML  285 (316)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS-HHHHHHHHH---TCCCC-----CC----------TTCCHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhCCCCCCcccchh-HHHHHHhcc---CccCC-----CC----------CCCCHHHHHHHH
Confidence            345678999999999999998 88886432111 111111111   11000     00          011223677889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||++.|+++.|+.+...
T Consensus       286 ~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          286 DCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999987654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=97.55  E-value=3.7e-05  Score=71.55  Aligned_cols=84  Identities=18%  Similarity=0.306  Sum_probs=56.2

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|++| |+.|....     +-............  ...+.             .....+.++..
T Consensus       196 ~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~-----~~~~~~~~~~~~~~--~~~~~-------------~~~~~l~~li~  255 (283)
T 3gen_A          196 SKFSSKSDIWAFGVLMWEIYSLGKMPYERF-----TNSETAEHIAQGLR--LYRPH-------------LASEKVYTIMY  255 (283)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTTCC--CCCCT-------------TCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCcccc-----ChhHHHHHHhcccC--CCCCC-------------cCCHHHHHHHH
Confidence            345678999999999999999 88886431     22222222211110  00010             11233778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||++.++++.|+.+..
T Consensus       256 ~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          256 SCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCChhHCcCHHHHHHHHHHHhh
Confidence            9999999999999999999988764

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=97.53  E-value=2.8e-05  Score=74.77  Aligned_cols=79  Identities=13%  Similarity=0.208  Sum_probs=49.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++|||||||++.|++||+.|....    ..-...+............ +.             .....+.++...
T Consensus       195 ~~~~~~~DiwslG~il~ell~g~~pf~~~----~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~l~~li~~  256 (343)
T 3dbq_A          195 SKISPKSDVWSLGCILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEF-PD-------------IPEKDLQDVLKC  256 (343)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSSCTTTTC----CSHHHHHHHHHCTTSCCCC-CC-------------CSCHHHHHHHHH
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCcchhh----hhHHHHHHHHhcCCcccCC-cc-------------cCCHHHHHHHHH
Confidence            45677899999999999999999996532    2222222222211100000 00             111236688899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       257 ~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          257 CLKRDPKQRISIPELLA  273 (343)
T ss_dssp             HTCSSTTTSCCHHHHHT
T ss_pred             HcCCChhHCCCHHHHHh
Confidence            99999999999999964

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=97.52  E-value=3.2e-05  Score=72.17  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||..|...    ..+..............   ....              ...+.++...
T Consensus       193 ~~~~~~~DiwslG~il~el~~g~~~~~~----~~~~~~~~~~~~~~~~~---~~~~--------------~~~l~~li~~  251 (289)
T 4fvq_A          193 KNLNLATDKWSFGTTLWEICSGGDKPLS----ALDSQRKLQFYEDRHQL---PAPK--------------AAELANLINN  251 (289)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHTTTCCTTT----TSCHHHHHHHHHTTCCC---CCCS--------------SCTTHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHcCCCCCcc----ccchHHHHHHhhccCCC---CCCC--------------CHHHHHHHHH
Confidence            3456789999999999999997665322    22222211111111000   0000              1125678889


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      |.+.+|.+||++.|+++.|+.+-.
T Consensus       252 ~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          252 CMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             HSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             HcCCChhHCcCHHHHHHHHHHhcC
Confidence            999999999999999999987643

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=97.52  E-value=4e-05  Score=71.50  Aligned_cols=84  Identities=18%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+|+++.|+++ |+.|.....  ...+...+.......        .          ...+...+.++..
T Consensus       187 ~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~~~~~~~~~~~~--------~----------~~~~~~~l~~li~  246 (288)
T 3kfa_A          187 NKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDYRME--------R----------PEGCPEKVYELMR  246 (288)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTCCCC--------C----------CTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhccCCCC--------C----------CCCCCHHHHHHHH
Confidence            345678999999999999999 888864321  112222222211100        0          0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.++++.|+.+..
T Consensus       247 ~~l~~dp~~Rps~~~~~~~l~~~~~  271 (288)
T 3kfa_A          247 ACWQWNPSDRPSFAEIHQAFETMFQ  271 (288)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHhCCChhhCcCHHHHHHHHHHHHH
Confidence            9999999999999999999987654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=97.51  E-value=2.2e-05  Score=73.81  Aligned_cols=88  Identities=22%  Similarity=0.370  Sum_probs=55.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCcccc----------CCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIF----------NGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC  453 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~----------~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~  453 (495)
                      ...+.++||||+|+++.|++||+.|....+          .+......+...........               ....+
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~  268 (302)
T 4e5w_A          204 SKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLP---------------CPPNC  268 (302)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCC---------------CCTTC
T ss_pred             CCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCC---------------CCCCC
Confidence            345678999999999999999998843211          01111111111111110000               01122


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ...+.++...|.+.+|.+||++.+++++|+.+.
T Consensus       269 ~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          269 PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            344778999999999999999999999998763

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=97.51  E-value=4.2e-05  Score=73.48  Aligned_cols=86  Identities=12%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++||||||+++.|++| |+.|....-. ...+...++......        .          ...+...+..+..
T Consensus       249 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~--------~----------~~~~~~~l~~li~  309 (344)
T 1rjb_A          249 GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGFKMD--------Q----------PFYATEEIYIIMQ  309 (344)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTCCCC--------C----------CTTCCHHHHHHHH
T ss_pred             CCCChhHhHHHHHHHHHHHHcCCCCCcccCCc-HHHHHHHHhcCCCCC--------C----------CCCCCHHHHHHHH
Confidence            345678999999999999998 9888643211 112222222111100        0          0011234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|...+|.+||++.++++.|+.+...
T Consensus       310 ~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          310 SCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             HHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999887544

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=97.50  E-value=3.1e-05  Score=75.91  Aligned_cols=78  Identities=13%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.|+++|+.|....    ..-...+..........-. +.             .....+.++...|
T Consensus       243 ~~~~~~DiwSlGvil~ell~G~~Pf~~~----~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~li~~~  304 (390)
T 2zmd_A          243 KISPKSDVWSLGCILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEF-PD-------------IPEKDLQDVLKCC  304 (390)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSSCTTTTC----CCHHHHHHHHHCTTSCCCC-CC-------------CSCHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHHHHCCCcchhh----hHHHHHHHHHhCccccCCC-Cc-------------cchHHHHHHHHHH
Confidence            4677899999999999999999996432    2222223222221110000 00             0112366788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       305 L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          305 LKRDPKQRISIPELLA  320 (390)
T ss_dssp             TCSSTTTSCCHHHHHT
T ss_pred             cccChhhCCCHHHHhh
Confidence            9999999999999964

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=97.49  E-value=4.3e-05  Score=79.82  Aligned_cols=85  Identities=15%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|||||||++.|++| |+.|....     +-...............               ...+...+.++.
T Consensus       546 ~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~-----~~~~~~~~i~~~~~~~~---------------p~~~~~~l~~li  605 (635)
T 4fl3_A          546 YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-----KGSEVTAMLEKGERMGC---------------PAGCPREMYDLM  605 (635)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCCCCC---------------CCCCCHHHHHHH
Confidence            3456778999999999999999 99996432     22222222222111100               112234477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ..|...+|.+||++.+|++.|+.+-.
T Consensus       606 ~~cl~~dP~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          606 NLCWTYDVENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             HHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999987643

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=97.47  E-value=5.6e-05  Score=72.07  Aligned_cols=84  Identities=17%  Similarity=0.311  Sum_probs=56.7

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++||||||+++.|++| |+.|...     .+.....+.........     .          ...+...+.++..
T Consensus       220 ~~~~~~~Di~slG~il~ellt~g~~p~~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~  279 (327)
T 2yfx_A          220 GIFTSKTDTWSFGVLLWEIFSLGYMPYPS-----KSNQEVLEFVTSGGRMD-----P----------PKNCPGPVYRIMT  279 (327)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTT-----CCHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCCCC-----cCHHHHHHHHhcCCCCC-----C----------CCCCCHHHHHHHH
Confidence            345678999999999999998 8888542     12222222222211100     0          0012234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.++++.++.+..
T Consensus       280 ~~l~~dp~~Rps~~~ll~~l~~~~~  304 (327)
T 2yfx_A          280 QCWQHQPEDRPNFAIILERIEYCTQ  304 (327)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHhcCChhhCcCHHHHHHHHHHHhc
Confidence            9999999999999999999988764

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=97.45  E-value=3.8e-05  Score=78.61  Aligned_cols=83  Identities=22%  Similarity=0.329  Sum_probs=56.5

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.|++| |+.|...     ......+..........               ....+...+.++.
T Consensus       438 ~~~~~~~sDvwSlGv~l~el~t~g~~P~~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~li  497 (535)
T 2h8h_A          438 YGRFTIKSDVWSFGILLTELTTKGRVPYPG-----MVNREVLDQVERGYRMP---------------CPPECPESLHDLM  497 (535)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTTCCSSTT-----CCHHHHHHHHHTTCCCC---------------CCTTCCHHHHHHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCCCCCHHHHHHH
Confidence            3456778999999999999999 8888543     22222222221111000               0112334477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|...+|.+||++.++++.|+.+
T Consensus       498 ~~cl~~dP~~RPt~~~l~~~L~~~  521 (535)
T 2h8h_A          498 CQCWRKEPEERPTFEYLQAFLEDY  521 (535)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHH
Confidence            999999999999999999999865

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=97.41  E-value=7.2e-05  Score=71.28  Aligned_cols=83  Identities=20%  Similarity=0.349  Sum_probs=56.6

Q ss_pred             cccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++||||+|+++.|++| |+.|...     .+.....+.........     .          ...+...+.++...
T Consensus       217 ~~~~~~Di~slG~il~ellt~g~~pf~~-----~~~~~~~~~~~~~~~~~-----~----------~~~~~~~l~~li~~  276 (327)
T 1fvr_A          217 VYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGYRLE-----K----------PLNCDDEVYDLMRQ  276 (327)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHGGGTCCCC-----C----------CTTBCHHHHHHHHH
T ss_pred             cCCchhcchHHHHHHHHHHcCCCCCCCC-----CcHHHHHHHhhcCCCCC-----C----------CCCCCHHHHHHHHH
Confidence            45678999999999999998 9998642     23333333222211000     0          00112347788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      |...+|.+||++.++++.|+.+..
T Consensus       277 ~l~~dp~~Rps~~ell~~L~~~~~  300 (327)
T 1fvr_A          277 CWREKPYERPSFAQILVSLNRMLE  300 (327)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HccCChhhCcCHHHHHHHHHHHHH
Confidence            999999999999999999988754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=97.41  E-value=4.5e-05  Score=72.56  Aligned_cols=81  Identities=19%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ..+..+.++||||||+++.|++||+.|....     +-...++......     .+.+..        .......+.++.
T Consensus       214 ~~~~~~~~~Dv~slG~il~el~~g~~pf~~~-----~~~~~~~~~~~~~-----~~~~~~--------~~~~~~~l~~li  275 (321)
T 2c30_A          214 SRSLYATEVDIWSLGIMVIEMVDGEPPYFSD-----SPVQAMKRLRDSP-----PPKLKN--------SHKVSPVLRDFL  275 (321)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSS-----CCCCTT--------GGGSCHHHHHHH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhcCC-----CCCcCc--------cccCCHHHHHHH
Confidence            3455677899999999999999999996421     2222222211111     011100        001122366778


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.|+++
T Consensus       276 ~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          276 ERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             HHHSCSSTTTSCCHHHHHT
T ss_pred             HHHccCChhhCcCHHHHhc
Confidence            8999999999999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=97.41  E-value=5.1e-05  Score=71.83  Aligned_cols=79  Identities=13%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|.....    .-...+..........    .+          ...+...+.++...
T Consensus       214 ~~~~~~~Di~slG~il~el~~g~~pf~~~~----~~~~~~~~~~~~~~~~----~~----------~~~~~~~l~~li~~  275 (313)
T 3cek_A          214 SKISPKSDVWSLGCILYYMTYGKTPFQQII----NQISKLHAIIDPNHEI----EF----------PDIPEKDLQDVLKC  275 (313)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSSCTTTTCC----SHHHHHHHHHCTTSCC----CC----------CCCSCHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHHhCCCchhhHH----HHHHHHHHHHhccccc----CC----------cccchHHHHHHHHH
Confidence            346678999999999999999999965322    2222222222211100    00          00112236678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       276 ~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          276 CLKRDPKQRISIPELLA  292 (313)
T ss_dssp             HTCSSTTTSCCHHHHHT
T ss_pred             HccCCcccCcCHHHHhc
Confidence            99999999999999964

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=97.40  E-value=3.5e-05  Score=71.91  Aligned_cols=79  Identities=15%  Similarity=0.294  Sum_probs=49.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|.+..   +..... +.............              ......+.++...
T Consensus       188 ~~~~~~~Di~slG~il~~l~~g~~p~~~~---~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~li~~  249 (290)
T 3fme_A          188 KGYSVKSDIWSLGITMIELAILRFPYDSW---GTPFQQ-LKQVVEEPSPQLPA--------------DKFSAEFVDFTSQ  249 (290)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHTSCSSCCC---SCHHHH-HHHHHHSCCCCCCT--------------TTSCHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHHCCCCcccc---CchHHH-HHHHhccCCCCccc--------------ccCCHHHHHHHHH
Confidence            34567899999999999999999996531   112111 22221111100000              0112336788899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.|+++
T Consensus       250 ~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          250 CLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             HTCSSGGGSCCHHHHTT
T ss_pred             HhhcChhhCcCHHHHHh
Confidence            99999999999999965

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=97.39  E-value=9.9e-05  Score=69.71  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++||||||+++.|++||+.|....     +. ..+.........   .+...         .......+.
T Consensus       205 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~-~~~~~~~~~~~~---~~~~~---------~~~~~~~l~  266 (309)
T 2h34_A          205 ERFSESHATYRADIYALTCVLYECLTGSPPYQGD-----QL-SVMGAHINQAIP---RPSTV---------RPGIPVAFD  266 (309)
T ss_dssp             GGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC-----HH-HHHHHHHHSCCC---CGGGT---------STTCCTHHH
T ss_pred             HHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc-----hH-HHHHHHhccCCC---Ccccc---------CCCCCHHHH
Confidence            3333455677899999999999999999996431     11 122222211110   00000         001122367


Q ss_pred             HHHhhcCCCCccCch-hHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRES-TQRKLLQDSQKL  485 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp-~m~~v~~~l~~i  485 (495)
                      ++...|...+|.+|| ++.++++.|+.+
T Consensus       267 ~li~~~l~~dP~~Rp~s~~~l~~~l~~~  294 (309)
T 2h34_A          267 AVIARGMAKNPEDRYVTCGDLSAAAHAA  294 (309)
T ss_dssp             HHHHHHTCSSGGGSCSSHHHHHHHHHHT
T ss_pred             HHHHHhccCCHHHHHHhHHHHHHHHHHH
Confidence            789999999999999 999999999865

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=97.38  E-value=3.8e-05  Score=73.01  Aligned_cols=84  Identities=17%  Similarity=0.366  Sum_probs=56.6

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++||||+|+++.|++| |+.|...     .+.....+..........               ...+...+.++..
T Consensus       215 ~~~~~~~Di~slG~il~el~~~g~~p~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~li~  274 (322)
T 1p4o_A          215 GVFTTYSDVWSFGVVLWEIATLAEQPYQG-----LSNEQVLRFVMEGGLLDK---------------PDNCPDMLFELMR  274 (322)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTSCCTTTT-----SCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhcCCCcccc-----CCHHHHHHHHHcCCcCCC---------------CCCCCHHHHHHHH
Confidence            345678999999999999999 7777542     233333333222221100               0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.|+++.|+.+..
T Consensus       275 ~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          275 MCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHcCCCcccCcCHHHHHHHHHHhhc
Confidence            9999999999999999999987643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=97.36  E-value=5.4e-05  Score=72.93  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=50.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++||||||+++.|++||+.|...     .+....+........     +....         ......+.++..
T Consensus       227 ~~~~~~~~DiwslG~il~ell~g~~p~~~-----~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~l~~li~  287 (348)
T 1u5q_A          227 EGQYDGKVDVWSLGITCIELAERKPPLFN-----MNAMSALYHIAQNES-----PALQS---------GHWSEYFRNFVD  287 (348)
T ss_dssp             SCCBCTHHHHHHHHHHHHHHHHSSCTTTT-----SCHHHHHHHHHHSCC-----CCCCC---------TTSCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCC-----CChHHHHHHHHhcCC-----CCCCC---------CCCCHHHHHHHH
Confidence            34567789999999999999999999532     122223322222111     11100         011123567888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       288 ~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          288 SCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             HHTCSSGGGSCCHHHHTT
T ss_pred             HHcccChhhCcCHHHHhh
Confidence            999999999999999964

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=71.68  Aligned_cols=102  Identities=7%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC---C-cceeeeccc--ccccc---ccccchhhHHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI---S-VMEVVDANL--LSWKD---KHFMTKEQCMS  455 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~---~-~~~v~d~~l--~~~~~---~~~~~~~~~~~  455 (495)
                      ..+.++||||||+++.|++||+.|.......... ...+......   . ...+....-  ..+..   ...........
T Consensus       199 ~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  277 (396)
T 4eut_A          199 KYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN-KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQV  277 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC-HHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch-HHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHh
Confidence            4567899999999999999999997643322222 2333332211   1 111111100  00000   00011123445


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .+..+...|.+.+|.+||++.|+++.++.+-.
T Consensus       278 ~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          278 LLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             HHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             hchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            57789999999999999999999999987753

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=97.34  E-value=3.5e-05  Score=71.37  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+|+++.|++||+.|.+...........|........          .        .......+.++...|..
T Consensus       186 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----------~--------~~~~~~~~~~li~~~l~  247 (276)
T 2yex_A          186 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN----------P--------WKKIDSAPLALLHKILV  247 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTST----------T--------GGGSCHHHHHHHHHHSC
T ss_pred             CCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccC----------c--------hhhcCHHHHHHHHHHCC
Confidence            55799999999999999999997643322222333332111000          0        00112236688999999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       248 ~~p~~Rps~~~il~  261 (276)
T 2yex_A          248 ENPSARITIPDIKK  261 (276)
T ss_dssp             SSTTTSCCHHHHTT
T ss_pred             CCchhCCCHHHHhc
Confidence            99999999999864

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=97.32  E-value=4.5e-05  Score=72.97  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.||+||+.|..    + .+....+..........     +..          ..-..+.++...|
T Consensus       201 ~y~~~~DiwSlGvilyemltG~~PF~----~-~~~~~~~~~i~~~~~~~-----~~~----------~~s~~~~~li~~~  260 (350)
T 4b9d_A          201 PYNNKSDIWALGCVLYELCTLKHAFE----A-GSMKNLVLKIISGSFPP-----VSL----------HYSYDLRSLVSQL  260 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSCC----C-SSHHHHHHHHHHTCCCC-----CCT----------TSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCC----C-cCHHHHHHHHHcCCCCC-----CCc----------cCCHHHHHHHHHH
Confidence            45668999999999999999999953    2 23334443333222110     100          1112356778899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.|+++
T Consensus       261 L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          261 FKRNPRDRPSVNSILE  276 (350)
T ss_dssp             TCSSGGGSCCHHHHHT
T ss_pred             ccCChhHCcCHHHHhc
Confidence            9999999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=0.00011  Score=63.60  Aligned_cols=90  Identities=9%  Similarity=0.076  Sum_probs=43.6

Q ss_pred             CchhccCCCCCCEEeCcCC-cCCcc----CCccccCCCCCcEEEccCCcccccCC----hhHhhcCCCCCEEEcccccCC
Q 011044           71 IPSELANLSSLQALDLSFN-WFYGS----IPSSIFNMSSLLSIYFNNNTLFGELP----PNFCNQMSNLESLFLKYNMFH  141 (495)
Q Consensus        71 ~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p----~~~~~~l~~L~~L~l~~n~l~  141 (495)
                      +...+.+-+.|++|+|++| .|.+.    +...+..-+.|+.|+|++|.+.+.--    ..+.. -+.|++|+|++|.|.
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCC
Confidence            3344455667777777764 55432    33344555566666666666642211    11111 344555555555554


Q ss_pred             cc----CCcccCCCCCCCEEEccc
Q 011044          142 GK----IPSTLSSCKQLRELSLSS  161 (495)
Q Consensus       142 ~~----~~~~l~~l~~L~~L~l~~  161 (495)
                      ..    +...+..-+.|++|+|++
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCC
Confidence            32    222333334455555543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=97.31  E-value=4.2e-05  Score=71.93  Aligned_cols=79  Identities=20%  Similarity=0.280  Sum_probs=49.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|...    .... ..+.............             .+.....+.++...
T Consensus       191 ~~~~~~~DiwslG~il~ell~g~~pf~~----~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~li~~  252 (297)
T 3fxz_A          191 KAYGPKVDIWSLGIMAIEMIEGEPPYLN----ENPL-RALYLIATNGTPELQN-------------PEKLSAIFRDFLNR  252 (297)
T ss_dssp             SCBCTHHHHHHHHHHHHHHHHSSCTTTT----SCHH-HHHHHHHHHCSCCCSC-------------GGGSCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCC----CCHH-HHHHHHHhCCCCCCCC-------------ccccCHHHHHHHHH
Confidence            4457789999999999999999999542    2221 1111111111000000             11112336678899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.|+++
T Consensus       253 ~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          253 CLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             HSCSSTTTSCCHHHHTT
T ss_pred             HccCChhHCcCHHHHhh
Confidence            99999999999999964

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.29  E-value=7.5e-05  Score=70.69  Aligned_cols=80  Identities=16%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|.+..    ..-...+..........     +...        ......+.++...
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~----~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~l~~li~~  266 (318)
T 2dyl_A          204 PDYDIRADVWSLGISLVELATGQFPYKNC----KTDFEVLTKVLQEEPPL-----LPGH--------MGFSGDFQSFVKD  266 (318)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSSCTTTTC----CSHHHHHHHHHHSCCCC-----CCSS--------SCCCHHHHHHHHH
T ss_pred             cCCccccchhhHHHHHHHHHhCCCCCCCC----CccHHHHHHHhccCCCC-----CCcc--------CCCCHHHHHHHHH
Confidence            44567899999999999999999996431    12222222222221100     0000        0112336778899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       267 ~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          267 CLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             HTCSCTTTSCCHHHHTT
T ss_pred             HccCChhHCcCHHHHhh
Confidence            99999999999999964

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.28  E-value=3.8e-05  Score=73.23  Aligned_cols=82  Identities=13%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|.+...    .....+.......     .+.+...      ....+...+.++...
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~l~~li~~  268 (327)
T 3aln_A          204 QGYDVRSDVWSLGITLYELATGRFPYPKWN----SVFDQLTQVVKGD-----PPQLSNS------EEREFSPSFINFVNL  268 (327)
T ss_dssp             --CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC-----CCCCCCC------SSCCCCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCcc----hHHHHHHHHhcCC-----CCCCCCc------ccccCCHHHHHHHHH
Confidence            345678999999999999999999964311    1111111111110     0111000      001123347788999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       269 ~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          269 CLTKDESKRPKYKELLK  285 (327)
T ss_dssp             HTCSSGGGSCCHHHHTT
T ss_pred             HhhCChhhCcCHHHHHh
Confidence            99999999999999954

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=97.27  E-value=8.4e-05  Score=69.27  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=49.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-cceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-VMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ..+.++||||+|+++.|+++|+.|...     .+............ .......              .....+.++...
T Consensus       201 ~~~~~~Di~slG~il~~ll~g~~pf~~-----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~li~~  261 (285)
T 3is5_A          201 DVTFKCDIWSAGVVMYFLLTGCLPFTG-----TSLEEVQQKATYKEPNYAVECR--------------PLTPQAVDLLKQ  261 (285)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCCCCC--C--------------CCCHHHHHHHHH
T ss_pred             CCCcccCeehHHHHHHHHHhCCCCCCC-----CCHHHHHhhhccCCcccccccC--------------cCCHHHHHHHHH
Confidence            456789999999999999999999642     23323322221111 0000000              011236678899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       262 ~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          262 MLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             HTCSCTTTSCCHHHHHT
T ss_pred             HccCChhhCcCHHHHhc
Confidence            99999999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.25  E-value=0.00022  Score=67.55  Aligned_cols=102  Identities=7%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCC-cceeeeccc--cccccc---cccchhhH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SIS-VMEVVDANL--LSWKDK---HFMTKEQC  453 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~-~~~v~d~~l--~~~~~~---~~~~~~~~  453 (495)
                      ....+.++||||||+++.|++||+.|........ .....+....   +.. ...+.+..-  ..+...   ........
T Consensus       197 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (319)
T 4euu_A          197 QKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-RNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGL  275 (319)
T ss_dssp             CCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGG-GCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccc-hhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhH
Confidence            3456789999999999999999999975432211 2222222222   211 222211110  000000   00111234


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ...+..+...|.+.+|.+||++.|+++...+.
T Consensus       276 ~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          276 QVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             HHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence            44577889999999999999999998877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=0.00017  Score=62.50  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=17.9

Q ss_pred             cCCCCCCCEEEcccCcCccccC----ccccCCCCCCEEEccCCCCC
Q 011044          148 LSSCKQLRELSLSSNYFSGTIP----KEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~  189 (495)
                      +..-+.|+.|+|++|.+.....    ..+..-+.|++|+|++|.+.
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3344455555555555442211    12222344555555555444

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=97.23  E-value=6.9e-05  Score=70.01  Aligned_cols=88  Identities=10%  Similarity=-0.002  Sum_probs=54.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|++||+.|....-...              ........+.................+.++...|
T Consensus       178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  243 (286)
T 3uqc_A          178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRS--------------GLAPAERDTAGQPIEPADIDRDIPFQISAVAARS  243 (286)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCC--------------CSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCCcCCcch--------------hhHHHHHHhccCCCChhhcccCCCHHHHHHHHHH
Confidence            45778999999999999999999965321100              0000000000000000000011233477889999


Q ss_pred             CCCCccCchhHHHHHHHHHHHHH
Q 011044          465 TVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .+.+|.+| ++.|+++.|+.+..
T Consensus       244 l~~dP~~R-s~~el~~~L~~~~~  265 (286)
T 3uqc_A          244 VQGDGGIR-SASTLLNLMQQATA  265 (286)
T ss_dssp             HCTTSSCC-CHHHHHHHHHHHHC
T ss_pred             cccCCccC-CHHHHHHHHHHHhc
Confidence            99999999 99999999988753

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=97.23  E-value=0.00012  Score=70.58  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||||+++.|++||+.|....    ..-....+....... ....+ .          .......+.++.
T Consensus       223 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~----~~~~~~~~~i~~~~~-~~~~~-~----------~~~~~~~~~~li  286 (349)
T 2w4o_A          223 RGCAYGPEVDMWSVGIITYILLCGFEPFYDE----RGDQFMFRRILNCEY-YFISP-W----------WDEVSLNAKDLV  286 (349)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCT----TCHHHHHHHHHTTCC-CCCTT-T----------TTTSCHHHHHHH
T ss_pred             cCCCCCcccchHHHHHHHHHHHhCCCCCCCC----cccHHHHHHHHhCCC-ccCCc-h----------hhhCCHHHHHHH
Confidence            3445677899999999999999999996431    111112222222111 00000 0          011223467889


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.|+++
T Consensus       287 ~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          287 RKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             HTTSCSSGGGSCCHHHHHH
T ss_pred             HHHccCChhhCcCHHHHhc
Confidence            9999999999999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=97.23  E-value=9e-05  Score=70.74  Aligned_cols=79  Identities=18%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.||+||+.|..    +. +-.+.++......     .+.+..        ....-..+.++...
T Consensus       245 ~~y~~~~DiWSlGvilyeml~G~~PF~----~~-~~~~~~~~i~~~~-----~~~~~~--------~~~~s~~~~dli~~  306 (346)
T 4fih_A          245 LPYGPEVDIWSLGIMVIEMVDGEPPYF----NE-PPLKAMKMIRDNL-----PPRLKN--------LHKVSPSLKGFLDR  306 (346)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTT----TS-CHHHHHHHHHHSS-----CCCCSC--------GGGSCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCC----Cc-CHHHHHHHHHcCC-----CCCCCc--------cccCCHHHHHHHHH
Confidence            345678999999999999999999953    22 2122222111110     011100        00111235677889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       307 ~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          307 LLVRDPAQRATAAELLK  323 (346)
T ss_dssp             HSCSSTTTSCCHHHHTT
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999854

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=97.21  E-value=0.00013  Score=67.46  Aligned_cols=73  Identities=11%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+||++.||+||+.|.+.     .+.....+....... . ....+              -..+.++...|.+
T Consensus       190 ~~~~DiwSlGvily~lltg~~PF~~-----~~~~~~~~~i~~~~~-~-~p~~~--------------s~~~~~li~~~L~  248 (275)
T 3hyh_A          190 GPEVDVWSCGVILYVMLCRRLPFDD-----ESIPVLFKNISNGVY-T-LPKFL--------------SPGAAGLIKRMLI  248 (275)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-C-CCTTS--------------CHHHHHHHHHHSC
T ss_pred             CChhhhHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCC-C-CCCCC--------------CHHHHHHHHHHcc
Confidence            4578999999999999999999542     233444433222111 0 00000              1125567889999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       249 ~dP~~R~s~~eil~  262 (275)
T 3hyh_A          249 VNPLNRISIHEIMQ  262 (275)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             CChhHCcCHHHHHc
Confidence            99999999999864

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.20  E-value=7.2e-05  Score=70.24  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=49.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC---c-ceeeeccccccccccccchhhHHHHHHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS---V-MEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~---~-~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+.++||||+|+++.|++||+.|......  ..   .........   . ....++.+..          .....+.++.
T Consensus       204 ~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~li  268 (303)
T 2vwi_A          204 YDFKADIWSFGITAIELATGAAPYHKYPP--MK---VLMLTLQNDPPSLETGVQDKEMLK----------KYGKSFRKMI  268 (303)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTTTSCG--GG---HHHHHHTSSCCCTTC-----CCCC----------CCCHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCccCch--hh---HHHHHhccCCCccccccccchhhh----------hhhHHHHHHH
Confidence            46689999999999999999999653211  11   111111111   1 1111221111          1123467888


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.++++
T Consensus       269 ~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          269 SLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             HHHCCSSGGGSCCHHHHHT
T ss_pred             HHHccCChhhCcCHHHHhh
Confidence            9999999999999999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=97.19  E-value=0.00015  Score=76.01  Aligned_cols=84  Identities=15%  Similarity=0.323  Sum_probs=56.4

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||||+++.|+++ |+.|....     +..+.+..........     +          ...+...+.++..
T Consensus       567 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~-----~~~~~~~~i~~~~~~~-----~----------~~~~~~~l~~li~  626 (656)
T 2j0j_A          567 RRFTSASDVWMFGVCMWEILMHGVKPFQGV-----KNNDVIGRIENGERLP-----M----------PPNCPPTLYSLMT  626 (656)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHHTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHcCCCCCCCC-----CHHHHHHHHHcCCCCC-----C----------CccccHHHHHHHH
Confidence            345678999999999999997 88885421     2222222211111000     0          0122334778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|...+|.+||++.++++.|+.+..
T Consensus       627 ~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          627 KCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999998754

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=97.19  E-value=4.9e-05  Score=72.42  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=49.4

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+|+++.|++||+.|.+...........|.........                  .......+.++...|..
T Consensus       186 ~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~li~~~L~  247 (323)
T 3tki_A          186 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP------------------WKKIDSAPLALLHKILV  247 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTT------------------GGGSCHHHHHHHHHHSC
T ss_pred             CCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCc------------------cccCCHHHHHHHHHHcc
Confidence            557999999999999999999975432222222233221111000                  01112335678999999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       248 ~dP~~R~t~~eil~  261 (323)
T 3tki_A          248 ENPSARITIPDIKK  261 (323)
T ss_dssp             SSTTTSCCHHHHTT
T ss_pred             CChhhCcCHHHHhh
Confidence            99999999999854

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=97.18  E-value=0.00011  Score=71.60  Aligned_cols=78  Identities=12%  Similarity=0.000  Sum_probs=49.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.|++||+.|....-...             ....+..     .       .......+.++...|
T Consensus       289 ~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~-------------~~~~~~~-----~-------~~~~~~~~~~li~~~  343 (377)
T 3byv_A          289 LMTFSFDAWALGLVIYWIWCADLPITKDAALG-------------GSEWIFR-----S-------CKNIPQPVRALLEGF  343 (377)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHSSCCC------C-------------CSGGGGS-----S-------CCCCCHHHHHHHHHH
T ss_pred             cCChhhhHHHHHHHHHHHHHCCCCCccccccc-------------chhhhhh-----h-------ccCCCHHHHHHHHHH
Confidence            45678999999999999999999954211100             0000000     0       001123367788999


Q ss_pred             CCCCccCchhHHHHHH--HHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ--DSQKLET  487 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~--~l~~i~~  487 (495)
                      ...+|.+||++.|+++  .++.++.
T Consensus       344 L~~dp~~Rpt~~e~l~hp~f~~~~~  368 (377)
T 3byv_A          344 LRYPKEDRLLPLQAMETPEYEQLRT  368 (377)
T ss_dssp             TCSSGGGCCCHHHHHTSHHHHHHHH
T ss_pred             cCCCchhCCCHHHHhhChHHHHHHH
Confidence            9999999999999974  4444443

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=97.17  E-value=8.1e-05  Score=69.78  Aligned_cols=86  Identities=19%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|.+.    . +-............... ....          .......+.++...
T Consensus       187 ~~~~~~~Di~slG~~l~~ll~g~~pf~~----~-~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~l~~li~~  250 (294)
T 4eqm_A          187 EATDECTDIYSIGIVLYEMLVGEPPFNG----E-TAVSIAIKHIQDSVPNV-TTDV----------RKDIPQSLSNVILR  250 (294)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHSSCSSCS----S-CHHHHHHHHHSSCCCCH-HHHS----------CTTSCHHHHHHHHH
T ss_pred             CCCCchHhHHHHHHHHHHHHhCCCCCCC----C-ChHHHHHHHhhccCCCc-chhc----------ccCCCHHHHHHHHH
Confidence            3456789999999999999999999643    2 22222222222221110 0000          01122347788999


Q ss_pred             cCCCCccCch-hHHHHHHHHHHH
Q 011044          464 CTVESPIRES-TQRKLLQDSQKL  485 (495)
Q Consensus       464 C~~~~p~~Rp-~m~~v~~~l~~i  485 (495)
                      |.+.+|.+|| ++.++.+.|+.+
T Consensus       251 ~l~~dp~~R~~~~~~l~~~l~~~  273 (294)
T 4eqm_A          251 ATEKDKANRYKTIQEMKDDLSSV  273 (294)
T ss_dssp             HSCSSGGGSCSSHHHHHHHHHTS
T ss_pred             HhcCCHhHccccHHHHHHHHHHH
Confidence            9999999998 899988888764

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=97.15  E-value=0.00014  Score=68.34  Aligned_cols=80  Identities=14%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|....     +-.................             .......+.++..
T Consensus       196 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~li~  257 (302)
T 2j7t_A          196 DTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPPTLLT-------------PSKWSVEFRDFLK  257 (302)
T ss_dssp             STTTTTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCCSS-------------GGGSCHHHHHHHH
T ss_pred             CCCCchhhhHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHHhccCCcccCC-------------ccccCHHHHHHHH
Confidence            344567899999999999999999996432     2222222222111100000             0111234678889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       258 ~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          258 IALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             HHSCSCTTTSCCHHHHTT
T ss_pred             HHcccChhhCCCHHHHhc
Confidence            999999999999999954

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=97.14  E-value=7e-05  Score=70.36  Aligned_cols=84  Identities=8%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|........      +   ...-...+..... ....   .........+.++...
T Consensus       173 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~------~---~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~li~~  239 (299)
T 3m2w_A          173 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA------I---SPGMKTRIRMGQY-EFPN---PEWSEVSEEVKMLIRN  239 (299)
T ss_dssp             CGGGGHHHHHHHHHHHHHHHHSSCSCCC----------------CCSCCSSCTTCC-SSCH---HHHTTSCHHHHHHHHH
T ss_pred             ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh------h---hHHHHHHHhhccc-cCCc---hhcccCCHHHHHHHHH
Confidence            345678999999999999999999964321100      0   0000000000000 0000   0001223347788999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       240 ~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          240 LLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             HTCSSTTTSCCHHHHHT
T ss_pred             HcccChhhCCCHHHHhc
Confidence            99999999999999965

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.13  E-value=3.8e-05  Score=72.69  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||++++|+++|+.|...    +.   .|-. .....    ..+.+.          ......+.++...|
T Consensus       231 ~~~~~~DiwslG~il~el~~g~~~~~~----~~---~~~~-~~~~~----~~~~~~----------~~~~~~l~~li~~~  288 (311)
T 3p1a_A          231 SYGTAADVFSLGLTILEVACNMELPHG----GE---GWQQ-LRQGY----LPPEFT----------AGLSSELRSVLVMM  288 (311)
T ss_dssp             CCSTHHHHHHHHHHHHHHHHTCCCCSS----HH---HHHH-HTTTC----CCHHHH----------TTSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCC----cc---HHHH-HhccC----CCcccc----------cCCCHHHHHHHHHH
Confidence            467789999999999999999776321    11   1211 11110    011110          01223477889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.|+++
T Consensus       289 L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          289 LEPDPKLRATAEALLA  304 (311)
T ss_dssp             SCSSTTTSCCHHHHHT
T ss_pred             cCCChhhCcCHHHHHh
Confidence            9999999999999874

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=97.12  E-value=0.00012  Score=67.92  Aligned_cols=78  Identities=8%  Similarity=0.139  Sum_probs=50.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|++||+.|....     +-....+.........     +.          ..+...+.++...|
T Consensus       192 ~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~i~~~~~~~-----~~----------~~~~~~l~~li~~~  251 (279)
T 2w5a_A          192 SYNEKSDIWSLGCLLYELCALMPPFTAF-----SQKELAGKIREGKFRR-----IP----------YRYSDELNEIITRM  251 (279)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCCC-----CC----------TTSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCccc-----CHHHHHHHHhhccccc-----CC----------cccCHHHHHHHHHH
Confidence            4567899999999999999999986432     2222222211111100     00          01123477889999


Q ss_pred             CCCCccCchhHHHHHHHH
Q 011044          465 TVESPIRESTQRKLLQDS  482 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~~l  482 (495)
                      ...+|.+||++.|+++.+
T Consensus       252 l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          252 LNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             TCSSGGGSCCHHHHHTST
T ss_pred             cCCCcccCCCHHHHHhCh
Confidence            999999999999998654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=97.09  E-value=0.00018  Score=67.90  Aligned_cols=80  Identities=24%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|+++|+.|....     +-...+.............+             ......+.++..
T Consensus       199 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~li~  260 (314)
T 3com_A          199 EIGYNCVADIWSLGITAIEMAEGKPPYADI-----HPMRAIFMIPTNPPPTFRKP-------------ELWSDNFTDFVK  260 (314)
T ss_dssp             SSCBCTTHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCCSSG-------------GGSCHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhcCCCcccCCc-------------ccCCHHHHHHHH
Confidence            345677899999999999999999996431     11111111111110000000             111234678899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       261 ~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          261 QCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             HHTCSCTTTSCCHHHHTT
T ss_pred             HHccCChhhCcCHHHHHh
Confidence            999999999999999964

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.09  E-value=0.00022  Score=68.32  Aligned_cols=80  Identities=10%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|....     +-...+......... ...+.           .......+.++...
T Consensus       251 ~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~li~~  313 (345)
T 3hko_A          251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGV-----NDADTISQVLNKKLC-FENPN-----------YNVLSPLARDLLSN  313 (345)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCC-TTSGG-----------GGGSCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCC-----ChHHHHHHHHhcccc-cCCcc-----------cccCCHHHHHHHHH
Confidence            44667899999999999999999996421     222222222221100 00000           00112336788899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.|+++
T Consensus       314 ~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          314 LLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HSCSCTTTSCCHHHHHH
T ss_pred             HcCCChhHCCCHHHHhc
Confidence            99999999999999865

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=97.08  E-value=0.00014  Score=71.12  Aligned_cols=29  Identities=10%  Similarity=0.053  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .....+.++...|...+|.+||++.|+++
T Consensus       363 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          363 EEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            34556889999999999999999999864

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=97.08  E-value=0.00031  Score=67.79  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      |.......+.++||||+|+++.|++||+.|..
T Consensus       229 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~  260 (360)
T 3llt_A          229 EVILNLGWDVSSDMWSFGCVLAELYTGSLLFR  260 (360)
T ss_dssp             HHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             HHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence            33334556789999999999999999999964

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=97.07  E-value=0.00017  Score=71.79  Aligned_cols=81  Identities=17%  Similarity=0.348  Sum_probs=52.0

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++|||||||++.|++| |+.|.+....   .-..+++......  ..  +.+         ........+.++..
T Consensus       214 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~---~~~~i~~~~~~~~--~~--~~~---------~~~~~~~~~~~li~  277 (434)
T 2rio_A          214 RRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS---RESNIIRGIFSLD--EM--KCL---------HDRSLIAEATDLIS  277 (434)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT---HHHHHHHTCCCCC--CC--TTC---------CCHHHHHHHHHHHH
T ss_pred             cCcchhhhhHhHHHHHHHHHhCCCCCCCCchh---hHHHHhcCCCCcc--cc--ccc---------ccccchHHHHHHHH
Confidence            457788999999999999999 8888643221   1112222111110  00  000         11123345778999


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.||++
T Consensus       278 ~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          278 QMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHTCSSGGGSCCHHHHHT
T ss_pred             HHhhCChhhCCCHHHHHh
Confidence            999999999999999964

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=97.07  E-value=7.7e-05  Score=71.45  Aligned_cols=85  Identities=7%  Similarity=0.077  Sum_probs=47.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|++||+.|.........  ..-............-.+           ........+.++..
T Consensus       203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~li~  269 (336)
T 3fhr_A          203 PEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAI--SPGMKRRIRLGQYGFPNP-----------EWSEVSEDAKQLIR  269 (336)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCTT-----------TSTTCCHHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhh--hhhHHHhhhccccccCch-----------hhccCCHHHHHHHH
Confidence            34556789999999999999999999653222111  000010000000000000           00112334678889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       270 ~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          270 LLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             HHSCSSGGGSCCHHHHHH
T ss_pred             HHCCCChhHCcCHHHHhc
Confidence            999999999999999975

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=97.07  E-value=0.00013  Score=68.42  Aligned_cols=75  Identities=11%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+|+++.|+++|+.|...     .....+......... ..-+             .......+.++...|.+
T Consensus       218 ~~~~Di~slG~~l~~l~~g~~pf~~-----~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~l~~li~~~l~  278 (298)
T 2zv2_A          218 GKALDVWAMGVTLYCFVFGQCPFMD-----ERIMCLHSKIKSQAL-EFPD-------------QPDIAEDLKDLITRMLD  278 (298)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC-CCCS-------------SSCCCHHHHHHHHHHTC
T ss_pred             CchhhhHhHHHHHHHHHHCCCCCCC-----ccHHHHHHHHhcccC-CCCC-------------ccccCHHHHHHHHHHhh
Confidence            5578999999999999999999642     122233322211111 0000             00112336788999999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       279 ~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          279 KNPESRIVVPEIKL  292 (298)
T ss_dssp             SCTTTSCCHHHHTT
T ss_pred             cChhhCCCHHHHhc
Confidence            99999999999853

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.07  E-value=7.8e-05  Score=69.71  Aligned_cols=77  Identities=18%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||||+++.|++||+.|....-.   .-....+......     .+.+.          ......+.++...|.
T Consensus       202 ~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~-----~~~~~----------~~~~~~~~~li~~~l  263 (295)
T 2clq_A          202 YGKAADIWSLGCTIIEMATGKPPFYELGE---PQAAMFKVGMFKV-----HPEIP----------ESMSAEAKAFILKCF  263 (295)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTSCTTGGGSS---HHHHHHHHHHHCC-----CCCCC----------TTSCHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCccCCCc---hhHHHHhhccccc-----ccccc----------ccCCHHHHHHHHHHc
Confidence            46689999999999999999999653211   1111111111000     01110          011233667889999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.++++
T Consensus       264 ~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          264 EPDPDKRACANDLLV  278 (295)
T ss_dssp             CSSTTTSCCHHHHHT
T ss_pred             cCChhhCCCHHHHhc
Confidence            999999999999864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=97.06  E-value=0.00014  Score=67.44  Aligned_cols=76  Identities=13%  Similarity=0.158  Sum_probs=45.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|.+..-..     .........      +..+          .......+.++...
T Consensus       187 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~------~~~~----------~~~~~~~~~~li~~  245 (278)
T 3cok_A          187 SAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK-----NTLNKVVLA------DYEM----------PSFLSIEAKDLIHQ  245 (278)
T ss_dssp             -----CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CCSS------CCCC----------CTTSCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCChhHH-----HHHHHHhhc------ccCC----------ccccCHHHHHHHHH
Confidence            34567899999999999999999996532111     111100000      0000          00112336788999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       246 ~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          246 LLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             HSCSSGGGSCCHHHHTT
T ss_pred             HcccCHhhCCCHHHHhc
Confidence            99999999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=97.05  E-value=0.00017  Score=70.91  Aligned_cols=84  Identities=10%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCC--CHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEM--TLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~--~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      .....+.++|||||||++.||+||+.|.........  .....+...   . ...-.+           ........+.+
T Consensus       236 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~---~-~~~~~~-----------~~~~~s~~~~~  300 (400)
T 1nxk_A          236 GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMG---Q-YEFPNP-----------EWSEVSEEVKM  300 (400)
T ss_dssp             CCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHT---C-CCCCTT-----------TTTTSCHHHHH
T ss_pred             CCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcC---c-ccCCCc-----------ccccCCHHHHH
Confidence            345567789999999999999999999754322111  122222110   0 000000           00112233678


Q ss_pred             HHhhcCCCCccCchhHHHHHH
Q 011044          460 LAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +...|...+|.+||++.|+++
T Consensus       301 li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          301 LIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             HHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHCCCChhHCcCHHHHhc
Confidence            899999999999999999965

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.05  E-value=0.00018  Score=66.79  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|....     +-.............  .++..          .......+.++..
T Consensus       185 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~li~  247 (283)
T 3bhy_A          185 YEPLGLEADMWSIGVITYILLSGASPFLGE-----TKQETLTNISAVNYD--FDEEY----------FSNTSELAKDFIR  247 (283)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCCC--CCHHH----------HTTCCHHHHHHHH
T ss_pred             CCCCCcchhhhhHHHHHHHHHHCCCCCCCc-----chHHHHHHhHhcccC--Ccchh----------cccCCHHHHHHHH
Confidence            345677899999999999999999996431     222222221111100  00000          0112234778899


Q ss_pred             hcCCCCccCchhHHHHHH--HHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ--DSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~--~l~~i~  486 (495)
                      .|...+|.+||++.|+++  .++.++
T Consensus       248 ~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          248 RLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             TTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             HHccCCHhHCcCHHHHHhCHHHHHHH
Confidence            999999999999999975  344443

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=97.05  E-value=0.00013  Score=68.69  Aligned_cols=78  Identities=17%  Similarity=0.254  Sum_probs=50.7

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|....     .-............     +.+..          .....+.++..
T Consensus       193 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~~~----------~~~~~l~~li~  252 (303)
T 3a7i_A          193 QSAYDSKADIWSLGITAIELARGEPPHSEL-----HPMKVLFLIPKNNP-----PTLEG----------NYSKPLKEFVE  252 (303)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCC-----CCCCS----------SCCHHHHHHHH
T ss_pred             cCCCCchhhhHHHHHHHHHHccCCCCCCCc-----CHHHHHHHhhcCCC-----CCCcc----------ccCHHHHHHHH
Confidence            445667899999999999999999996432     11122211111110     00100          11233778899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       253 ~~l~~dp~~Rps~~~ll~  270 (303)
T 3a7i_A          253 ACLNKEPSFRPTAKELLK  270 (303)
T ss_dssp             HHCCSSGGGSCCHHHHTT
T ss_pred             HHcCCChhhCcCHHHHhh
Confidence            999999999999999965

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=97.05  E-value=0.00024  Score=65.83  Aligned_cols=77  Identities=13%  Similarity=0.212  Sum_probs=50.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|+++|+.|...     .+.....+.......      .+          .......+.++..
T Consensus       181 ~~~~~~~~Di~slG~il~~l~~g~~p~~~-----~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~li~  239 (279)
T 3fdn_A          181 GRMHDEKVDLWSLGVLCYEFLVGKPPFEA-----NTYQETYKRISRVEF------TF----------PDFVTEGARDLIS  239 (279)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHTCC------CC----------CTTSCHHHHHHHH
T ss_pred             cCCCCccchhHhHHHHHHHHHHCCCCCCC-----CcHHHHHHHHHhCCC------CC----------CCcCCHHHHHHHH
Confidence            34456789999999999999999999642     222222222111110      00          0011123667889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       240 ~~l~~~p~~Rps~~e~l~  257 (279)
T 3fdn_A          240 RLLKHNPSQRPMLREVLE  257 (279)
T ss_dssp             HHCCSSGGGSCCHHHHHH
T ss_pred             HHhccChhhCCCHHHHhh
Confidence            999999999999999975

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=97.03  E-value=0.00016  Score=68.75  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=52.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||||+++.|++||+.|...... ...+...+.......     .+..          .......+.++...
T Consensus       194 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~li~~  257 (322)
T 2ycf_A          194 AGYNRAVDCWSLGVILFICLSGYPPFSEHRT-QVSLKDQITSGKYNF-----IPEV----------WAEVSEKALDLVKK  257 (322)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC-SSCHHHHHHHTCCCC-----CHHH----------HTTSCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCcccch-HHHHHHHHHhCcccc-----Cchh----------hhhcCHHHHHHHHH
Confidence            3456789999999999999999999754221 223333333211100     0000          01122347788999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       258 ~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          258 LLVVDPKARFTTEEALR  274 (322)
T ss_dssp             HSCSSTTTSCCHHHHHT
T ss_pred             HcccCHhhCCCHHHHhh
Confidence            99999999999999963

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=97.00  E-value=0.00027  Score=67.14  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.|++||+.|....     +-..-+........     +.+..         ......+.++..
T Consensus       208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~-----~~~~~---------~~~~~~l~~li~  268 (326)
T 2x7f_A          208 DATYDFKSDLWSLGITAIEMAEGAPPLCDM-----HPMRALFLIPRNPA-----PRLKS---------KKWSKKFQSFIE  268 (326)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCC-----CCCSC---------SCSCHHHHHHHH
T ss_pred             CcCCCccchHHHHHHHHHHHHhCCCCCCCC-----cHHHHHHHhhcCcc-----ccCCc---------cccCHHHHHHHH
Confidence            345677899999999999999999996431     11111111111110     01100         011223667888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       269 ~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          269 SCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             HHCCSSGGGSCCHHHHHT
T ss_pred             HHhccChhhCCCHHHHhh
Confidence            999999999999999964

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=96.98  E-value=0.00027  Score=67.40  Aligned_cols=96  Identities=14%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc---------eeeecccccccc---------
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM---------EVVDANLLSWKD---------  444 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~---------~v~d~~l~~~~~---------  444 (495)
                      ....+.++||||+|+++.|++||+.|....-  .......+.........         ...+..-..+..         
T Consensus       208 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (339)
T 1z57_A          208 ALGWSQPCDVWSIGCILIEYYLGFTVFPTHD--SKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVS  285 (339)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC--HHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhh
Confidence            4456778999999999999999999964311  11111111111110000         000000000000         


Q ss_pred             -------ccccchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          445 -------KHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       445 -------~~~~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                             ........+...+.++...|...+|.+||++.|+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  328 (339)
T 1z57_A          286 RACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK  328 (339)
T ss_dssp             HHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             hcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence                   000011234556889999999999999999999863

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=96.98  E-value=0.00021  Score=70.10  Aligned_cols=79  Identities=18%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.||++|+.|..    +. +-.+.++......     .+.+...        ...-..+..+...
T Consensus       322 ~~y~~~~DiWSlGvilyeml~G~~PF~----~~-~~~~~~~~i~~~~-----~~~~~~~--------~~~s~~~~dli~~  383 (423)
T 4fie_A          322 LPYGPEVDIWSLGIMVIEMVDGEPPYF----NE-PPLKAMKMIRDNL-----PPRLKNL--------HKVSPSLKGFLDR  383 (423)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTT----TS-CHHHHHHHHHHSC-----CCCCSCT--------TSSCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCC----Cc-CHHHHHHHHHcCC-----CCCCccc--------ccCCHHHHHHHHH
Confidence            345678999999999999999999953    22 2122222111110     0111000        0011225677889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       384 ~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          384 LLVRDPAQRATAAELLK  400 (423)
T ss_dssp             HSCSSTTTSCCHHHHTT
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999854

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=96.96  E-value=0.00051  Score=65.83  Aligned_cols=88  Identities=16%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             CCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeee-cccccc-ccc-cccchhhHHHHHHHHHhhcC
Q 011044          389 NGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVD-ANLLSW-KDK-HFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       389 ~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d-~~l~~~-~~~-~~~~~~~~~~~~~~~~~~C~  465 (495)
                      ++||||+|+++.|++||+.|.....    .....++.........-.+ ...... ... ...........+.++...|.
T Consensus       232 ~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  307 (348)
T 2pml_X          232 KVDIWSLGICLYVMFYNVVPFSLKI----SLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFL  307 (348)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS----CSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCC----cHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHc
Confidence            8999999999999999999965321    1122333222221100000 000000 000 00000112334778899999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.|+++
T Consensus       308 ~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          308 RKNPAERITSEDALK  322 (348)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             cCChhhCCCHHHHhc
Confidence            999999999999964

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=96.96  E-value=0.0002  Score=66.57  Aligned_cols=81  Identities=12%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|+++|+.|...     .+-............ ....+.           .......+.++..
T Consensus       181 ~~~~~~~~Di~slG~~l~~l~~g~~pf~~-----~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~li~  243 (284)
T 3kk8_A          181 KDPYSKPVDIWACGVILYILLVGYPPFWD-----EDQHRLYAQIKAGAY-DYPSPE-----------WDTVTPEAKSLID  243 (284)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-CCCTTT-----------TTTSCHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHHHHHHCCCCCCC-----CchhHHHHHHHhccc-cCCchh-----------hcccCHHHHHHHH
Confidence            44567789999999999999999999542     122222222111110 000000           0011233678889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       244 ~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          244 SMLTVNPKKRITADQALK  261 (284)
T ss_dssp             HHSCSSTTTSCCHHHHTT
T ss_pred             HHcccChhhCCCHHHHhc
Confidence            999999999999999964

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=96.96  E-value=0.00018  Score=68.37  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|++||+.|...     .+-...++........  .+...          .......+.++..
T Consensus       177 ~~~~~~~~DiwslG~il~~ll~g~~pf~~-----~~~~~~~~~i~~~~~~--~~~~~----------~~~~s~~~~~li~  239 (321)
T 1tki_A          177 HDVVSTATDMWSLGTLVYVLLSGINPFLA-----ETNQQIIENIMNAEYT--FDEEA----------FKEISIEAMDFVD  239 (321)
T ss_dssp             TCEECHHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHTCCC--CCHHH----------HTTSCHHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCcC-----CCHHHHHHHHHcCCCC--CChhh----------hccCCHHHHHHHH
Confidence            34456789999999999999999999542     1222333322221110  00000          0011233678899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       240 ~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          240 RLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TTSCSSGGGSCCHHHHHH
T ss_pred             HHcCCChhHCcCHHHHhc
Confidence            999999999999999975

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=96.95  E-value=0.00029  Score=67.67  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .....+.++||||+|+++.|++||+.|..
T Consensus       212 ~~~~~~~~~Di~slG~il~el~~g~~pf~  240 (355)
T 2eu9_A          212 LELGWAQPCDVWSIGCILFEYYRGFTLFQ  240 (355)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ecCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence            34456778999999999999999999964

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=96.95  E-value=0.00013  Score=70.77  Aligned_cols=85  Identities=13%  Similarity=0.064  Sum_probs=50.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|||||||++.||+||+.|..........  .|.+    .............      .........+.++...
T Consensus       268 ~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~--~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~li~~  335 (371)
T 3q60_A          268 ATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG--SWKR----PSLRVPGTDSLAF------GSCTPLPDFVKTLIGR  335 (371)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT--CCCB----CCTTSCCCCSCCC------TTSSCCCHHHHHHHHH
T ss_pred             CCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc--chhh----hhhhhccccccch------hhccCCCHHHHHHHHH
Confidence            45677899999999999999999997643221110  0000    0000000001000      0001223347788899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.++++
T Consensus       336 ~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          336 FLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             HTCSSTTTCCCHHHHTT
T ss_pred             HcCCChhhCCCHHHHhc
Confidence            99999999999999953

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=96.94  E-value=0.0003  Score=65.48  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+|+++.|++||+.|...     .+-....+.........  +  ..        ........+.++...|
T Consensus       198 ~~~~~~Di~slG~~l~~l~~g~~p~~~-----~~~~~~~~~~~~~~~~~--~--~~--------~~~~~~~~~~~li~~~  260 (287)
T 2wei_A          198 TYDEKCDVWSAGVILYILLSGTPPFYG-----KNEYDILKRVETGKYAF--D--LP--------QWRTISDDAKDLIRKM  260 (287)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCCC--C--SG--------GGTTSCHHHHHHHHHH
T ss_pred             CCCCchhhHhHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCCCC--C--ch--------hhhhcCHHHHHHHHHH
Confidence            356789999999999999999999643     12222222222111100  0  00        0011123477889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       261 l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          261 LTFHPSLRITATQCLE  276 (287)
T ss_dssp             TCSSGGGSCCHHHHHH
T ss_pred             cccChhhCcCHHHHhc
Confidence            9999999999999975

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=96.94  E-value=0.00028  Score=68.45  Aligned_cols=29  Identities=7%  Similarity=0.030  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .....+.++...|...+|.+||++.|+++
T Consensus       305 ~~~~~~~~li~~~L~~dP~~Rpt~~ell~  333 (373)
T 1q8y_A          305 DEAKEISDFLSPMLQLDPRKRADAGGLVN  333 (373)
T ss_dssp             HHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             chHHHHHHHHHHHhccCccccCCHHHHhh
Confidence            34556889999999999999999999964

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=96.94  E-value=0.00082  Score=62.33  Aligned_cols=78  Identities=9%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|+||+|+++.|+++|+.|.+..     +.....+.......      .+-.          .....+.++.
T Consensus       185 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~~------~~~~----------~~~~~~~~li  243 (284)
T 2vgo_A          185 EGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP-----SHTETHRRIVNVDL------KFPP----------FLSDGSKDLI  243 (284)
T ss_dssp             TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCC------CCCT----------TSCHHHHHHH
T ss_pred             ccCCCCcccchhhHHHHHHHHHHCCCCCCCC-----CHhHHHHHHhcccc------CCCC----------cCCHHHHHHH
Confidence            3445678899999999999999999996431     22222222222110      0000          0112366789


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.++++
T Consensus       244 ~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          244 SKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             HHHSCSSGGGSCCHHHHHT
T ss_pred             HHHhhcCHhhCCCHHHHhh
Confidence            9999999999999999964

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=96.92  E-value=0.00032  Score=69.19  Aligned_cols=73  Identities=11%  Similarity=-0.048  Sum_probs=48.8

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|||||||++.|++||+.|.......+                 ..+..+...        ......+.++.
T Consensus       290 ~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~-----------------~~~~~~~~~--------~~~~~~~~~li  344 (413)
T 3dzo_A          290 HPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG-----------------GSEWIFRSC--------KNIPQPVRALL  344 (413)
T ss_dssp             CCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS-----------------CSGGGGSSC--------CCCCHHHHHHH
T ss_pred             cCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh-----------------hHHHHHhhc--------ccCCHHHHHHH
Confidence            33456779999999999999999999964321100                 011111000        01123477788


Q ss_pred             hhcCCCCccCchhHHHHH
Q 011044          462 MECTVESPIRESTQRKLL  479 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~  479 (495)
                      ..|...+|.+||++.+++
T Consensus       345 ~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          345 EGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             HHHTCSSGGGSCCHHHHT
T ss_pred             HHHccCChhhCcCHHHHH
Confidence            899999999999998884

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=96.91  E-value=0.00026  Score=67.40  Aligned_cols=81  Identities=12%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|++||+.|...    . +-...+........ .. ....          .......+.++..
T Consensus       191 ~~~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~~~~~~~-~~-~~~~----------~~~~~~~~~~li~  253 (326)
T 2y0a_A          191 YEPLGLEADMWSIGVITYILLSGASPFLG----D-TKQETLANVSAVNY-EF-EDEY----------FSNTSALAKDFIR  253 (326)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCC----S-SHHHHHHHHHHTCC-CC-CHHH----------HTTSCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCCC----C-CHHHHHHHHHhcCC-Cc-Cccc----------cccCCHHHHHHHH
Confidence            34466789999999999999999999542    1 22222222111110 00 0000          0011233667888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       254 ~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          254 RLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             HHSCSSGGGSCCHHHHHH
T ss_pred             HHccCChhhCCCHHHHhc
Confidence            999999999999999965

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=96.90  E-value=0.00022  Score=67.95  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|++||+.|...    . +-............ .. ....          .......+.++..
T Consensus       207 ~~~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~i~~~~~-~~-~~~~----------~~~~~~~~~~li~  269 (327)
T 3lm5_A          207 YDPITTATDMWNIGIIAYMLLTHTSPFVG----E-DNQETYLNISQVNV-DY-SEET----------FSSVSQLATDFIQ  269 (327)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCC-CC-CTTT----------TTTSCHHHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCC----C-CchHHHHHHHhccc-cc-Cchh----------hcccCHHHHHHHH
Confidence            44567789999999999999999999643    1 11111111111000 00 0000          0112233677899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.++++
T Consensus       270 ~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          270 SLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             HHSCSSGGGSCCHHHHTT
T ss_pred             HHcCCChhhCcCHHHHhC
Confidence            999999999999999854

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=96.90  E-value=0.00029  Score=67.98  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC--cceeeecccc----------ccccccccchhhH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS--VMEVVDANLL----------SWKDKHFMTKEQC  453 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~--~~~v~d~~l~----------~~~~~~~~~~~~~  453 (495)
                      .+.++||||||+++.|++||+.|....-. ...+..+++..-...  ...-.++...          .+...........
T Consensus       209 ~~~~~Di~slG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (360)
T 3e3p_A          209 YTTAVDIWSVGCIFAEMMLGEPIFRGDNS-AGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKD  287 (360)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTT
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCcCCCCh-HHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccc
Confidence            57789999999999999999998643111 111222222111000  0000000000          0000000000113


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|.+.+|.+||++.|+++
T Consensus       288 ~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          288 AKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             HHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             cHHHHHHHHHHhccCccccCCHHHHhc
Confidence            456888999999999999999999964

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=96.89  E-value=0.0001  Score=70.25  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce-------eeeccccc---------cccc-c
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME-------VVDANLLS---------WKDK-H  446 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~-------v~d~~l~~---------~~~~-~  446 (495)
                      ...+.++||||+|+++.|++||+.|..........+....+..-.....+       -.++.+..         +... .
T Consensus       206 ~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (330)
T 3nsz_A          206 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVH  285 (330)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCC
T ss_pred             CcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhcc
Confidence            34567899999999999999999996432111011111111000000000       00110000         0000 0


Q ss_pred             ccchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          447 FMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       447 ~~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..........+.++...|...+|.+||++.|+++
T Consensus       286 ~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          286 SENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             TTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            0001112345778899999999999999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=96.88  E-value=0.00021  Score=69.01  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCcc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDE  411 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~  411 (495)
                      ....+.++||||+|+++.|++||+.|...
T Consensus       204 ~~~~~~~~Di~slG~il~~l~~g~~pf~~  232 (360)
T 3eqc_A          204 GTHYSVQSDIWSMGLSLVEMAVGRYPIPP  232 (360)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            34566789999999999999999999653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=96.88  E-value=0.00036  Score=67.78  Aligned_cols=81  Identities=11%  Similarity=0.120  Sum_probs=51.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.||+||+.|...    . +-...+........ ...+..           .......+.++..
T Consensus       262 ~~~~~~~~DiwslG~il~elltg~~pf~~----~-~~~~~~~~i~~~~~-~~~~~~-----------~~~~~~~~~~li~  324 (373)
T 2x4f_A          262 YDFVSFPTDMWSVGVIAYMLLSGLSPFLG----D-NDAETLNNILACRW-DLEDEE-----------FQDISEEAKEFIS  324 (373)
T ss_dssp             TCBCCHHHHHHHHHHHHHHHHHSSCTTCC----S-SHHHHHHHHHHTCC-CSCSGG-----------GTTSCHHHHHHHH
T ss_pred             CCCCCcHHhHHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhccC-CCChhh-----------hccCCHHHHHHHH
Confidence            34566789999999999999999999542    1 22222222221110 000000           0011234678899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       325 ~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          325 KLLIKEKSWRISASEALK  342 (373)
T ss_dssp             TTSCSSGGGSCCHHHHHH
T ss_pred             HHcCCChhhCCCHHHHhc
Confidence            999999999999999975

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=96.87  E-value=0.00025  Score=65.56  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=49.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+|+++.|++||+.|....     +-............ .....           ........+.++...|
T Consensus       183 ~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~li~~~  245 (277)
T 3f3z_A          183 LYGPECDEWSAGVMMYVLLCGYPPFSAP-----TDSEVMLKIREGTF-TFPEK-----------DWLNVSPQAESLIRRL  245 (277)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-CCCHH-----------HHTTSCHHHHHHHHHH
T ss_pred             cCCchhhehhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCC-CCCch-----------hhhcCCHHHHHHHHHH
Confidence            3677899999999999999999996431     11122221111110 00000           0001223467888999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.++++
T Consensus       246 l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          246 LTKSPKQRITSLQALE  261 (277)
T ss_dssp             TCSSTTTSCCHHHHTT
T ss_pred             ccCChhhCcCHHHHhc
Confidence            9999999999999864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=96.87  E-value=0.00029  Score=66.11  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||+|+++.|++||+.|.+.     .+.....+.......      .+          ...+...+.++...|.
T Consensus       190 ~~~~~Di~slG~il~~l~~g~~p~~~-----~~~~~~~~~i~~~~~------~~----------~~~~~~~l~~li~~~l  248 (305)
T 2wtk_C          190 SGFKVDIWSAGVTLYNITTGLYPFEG-----DNIYKLFENIGKGSY------AI----------PGDCGPPLSDLLKGML  248 (305)
T ss_dssp             ESHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHCCC------CC----------CSSSCHHHHHHHHHHT
T ss_pred             CcchhhHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHhcCCC------CC----------CCccCHHHHHHHHHHc
Confidence            35689999999999999999999642     233333332221110      00          0012234668889999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.|+++
T Consensus       249 ~~dp~~Rps~~~ll~  263 (305)
T 2wtk_C          249 EYEPAKRFSIRQIRQ  263 (305)
T ss_dssp             CSSTTTSCCHHHHHH
T ss_pred             cCChhhCCCHHHHhc
Confidence            999999999999975

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=96.85  E-value=0.00022  Score=70.53  Aligned_cols=80  Identities=13%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+|+++.|++||+.|..... ....+...+........     +..          .......+.++...|
T Consensus       320 ~~~~~~DiwslG~il~~lltg~~pf~~~~-~~~~~~~~i~~~~~~~~-----~~~----------~~~~~~~~~~li~~~  383 (419)
T 3i6u_A          320 GYNRAVDCWSLGVILFICLSGYPPFSEHR-TQVSLKDQITSGKYNFI-----PEV----------WAEVSEKALDLVKKL  383 (419)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHSSCSSCCCS-SSCCHHHHHHTTCCCCC-----HHH----------HTTSCHHHHHHHHHH
T ss_pred             CCCchhhhHhHHHHHHHHHHCCCCCCCCc-chHHHHHHHhcCCCCCC-----chh----------hcccCHHHHHHHHHH
Confidence            45668999999999999999999965422 12333333322111000     000          011223467889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.|+++
T Consensus       384 L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          384 LVVDPKARFTTEEALR  399 (419)
T ss_dssp             SCSSTTTSCCHHHHHH
T ss_pred             ccCChhHCcCHHHHhC
Confidence            9999999999999965

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=96.85  E-value=0.00041  Score=65.75  Aligned_cols=81  Identities=12%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|++||+.|...     .+-...+........ . .++...          ......+.++..
T Consensus       192 ~~~~~~~~Di~slG~il~~l~~g~~pf~~-----~~~~~~~~~i~~~~~-~-~~~~~~----------~~~~~~~~~li~  254 (321)
T 2a2a_A          192 YEPLGLEADMWSIGVITYILLSGASPFLG-----DTKQETLANITSVSY-D-FDEEFF----------SHTSELAKDFIR  254 (321)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCC-----SSHHHHHHHHHTTCC-C-CCHHHH----------TTCCHHHHHHHH
T ss_pred             CCCCCCccccHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHhccc-c-cChhhh----------cccCHHHHHHHH
Confidence            34567789999999999999999999642     122233322221110 0 011110          011233678899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       255 ~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          255 KLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             TTSCSSTTTSCCHHHHHH
T ss_pred             HHcCCChhhCcCHHHHhc
Confidence            999999999999999964

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=96.84  E-value=0.00025  Score=66.78  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----c-cee--eecccccccccc-ccchhhHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----V-MEV--VDANLLSWKDKH-FMTKEQCMS  455 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~-~~v--~d~~l~~~~~~~-~~~~~~~~~  455 (495)
                      ...+.++||||+|+++.|++||+.|....-  .......+.......    . ...  ....+....... .....+...
T Consensus       194 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (308)
T 3g33_A          194 STYATPVDMWSVGCIFAEMFRRKPLFCGNS--EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEE  271 (308)
T ss_dssp             SCCCSTHHHHHHHHHHHHTTTSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCH
T ss_pred             CCCCchHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccH
Confidence            446778999999999999999999954211  111111111111110    0 000  000000000000 000011223


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.++...|.+.+|.+||++.|+++
T Consensus       272 ~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          272 SGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHhcCCCccCCCHHHHhc
Confidence            4678899999999999999999864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=96.84  E-value=0.00028  Score=68.77  Aligned_cols=32  Identities=16%  Similarity=0.138  Sum_probs=26.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCc
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      |.......+.++|||||||++.|++||+.|..
T Consensus       228 E~~~~~~~~~~~DiwSlG~il~elltg~~pf~  259 (382)
T 2vx3_A          228 EVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS  259 (382)
T ss_dssp             HHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             HHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            33334456788999999999999999999964

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=96.84  E-value=0.00016  Score=67.13  Aligned_cols=72  Identities=11%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||||+++.|+++|+.+..    .. .  .|.. .......     .+..          .....+.++...|.
T Consensus       208 ~~~~~Di~slG~il~~l~~~~~~~~----~~-~--~~~~-~~~~~~~-----~~~~----------~~~~~~~~li~~~l  264 (289)
T 1x8b_A          208 HLPKADIFALALTVVCAAGAEPLPR----NG-D--QWHE-IRQGRLP-----RIPQ----------VLSQEFTELLKVMI  264 (289)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCCCS----SS-H--HHHH-HHTTCCC-----CCSS----------CCCHHHHHHHHHHT
T ss_pred             CCchhhHHHHHHHHHHHhcCCCCCc----ch-h--HHHH-HHcCCCC-----CCCc----------ccCHHHHHHHHHHh
Confidence            4468999999999999999987632    11 1  1111 1111110     0100          11233678889999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.|+++
T Consensus       265 ~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          265 HPDPERRPSAMALVK  279 (289)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             CCCcccCCCHHHHhh
Confidence            999999999999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=96.83  E-value=0.00042  Score=64.67  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=49.9

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCcc----eee---ecc---ccccccccccchhh
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISVM----EVV---DAN---LLSWKDKHFMTKEQ  452 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~~----~v~---d~~---l~~~~~~~~~~~~~  452 (495)
                      .+.++||||+|+++.|++||+.|...    +.+....++...   .....    .+.   +..   ..............
T Consensus       179 ~~~~~DiwslG~il~~l~~~~~p~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
T 3o0g_A          179 YSTSIDMWSAGCIFAELANAGRPLFP----GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPK  254 (292)
T ss_dssp             CCTHHHHHHHHHHHHHHTTTSCCSCC----CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTT
T ss_pred             cCchHHHHHHHHHHHHHHHcCCCCcC----CCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccc
Confidence            57789999999999999999988422    222222222221   11000    000   000   00000000000011


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .-..+.++...|.+.+|.+||++.|+++
T Consensus       255 ~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          255 LNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            2234668899999999999999999864

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=96.80  E-value=0.00037  Score=65.81  Aligned_cols=84  Identities=11%  Similarity=0.113  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCC----------HHHHHHHHhCCCcceeeeccccccccccccchhhHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMT----------LRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCM  454 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~----------l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~  454 (495)
                      ..+.++||||+|+++.|++||+.|.......+..          .....+...... ...-+.           ......
T Consensus       202 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-----------~~~~~~  269 (316)
T 2ac3_A          202 IYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGK-YEFPDK-----------DWAHIS  269 (316)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCC-CCCCHH-----------HHTTSC
T ss_pred             CCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccC-cccCch-----------hcccCC
Confidence            3567899999999999999999997543221100          000111111100 000000           000112


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.|+++
T Consensus       270 ~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          270 CAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            34778899999999999999999965

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=96.77  E-value=0.00034  Score=64.58  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+|+++.|+++|+.|.+.     .+.....+....... .  .+.             .....+.++...|..
T Consensus       189 ~~~~Di~slG~~l~~l~~g~~p~~~-----~~~~~~~~~~~~~~~-~--~~~-------------~~~~~l~~li~~~l~  247 (276)
T 2h6d_A          189 GPEVDIWSCGVILYALLCGTLPFDD-----EHVPTLFKKIRGGVF-Y--IPE-------------YLNRSVATLLMHMLQ  247 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC-C--CCT-------------TSCHHHHHHHHHHTC
T ss_pred             CccchHHHHHHHHHHHHhCCCCCCC-----CcHHHHHHHhhcCcc-c--Cch-------------hcCHHHHHHHHHHcc
Confidence            4679999999999999999999643     222232222211110 0  000             112236788999999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       248 ~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          248 VDPLKRATIKDIRE  261 (276)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             CChhhCCCHHHHHh
Confidence            99999999999975

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=96.77  E-value=0.00023  Score=67.09  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=50.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-------------c--ceeeeccccccccccccc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-------------V--MEVVDANLLSWKDKHFMT  449 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-------------~--~~v~d~~l~~~~~~~~~~  449 (495)
                      ..+.++||||+|+++.|++||+.|....-.  ......+.......             .  ..+-++.-.....   ..
T Consensus       179 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  253 (311)
T 4agu_A          179 QYGPPVDVWAIGCVFAELLSGVPLWPGKSD--VDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLE---LK  253 (311)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHH---HH
T ss_pred             CCCcchhhHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhcccccccccccccccccccCcCCCccccchhh---hh
Confidence            356789999999999999999998643211  11111111111110             0  0010110000000   00


Q ss_pred             hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .......+.++...|...+|.+||++.|+++
T Consensus       254 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          254 FPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            0122334778999999999999999999963

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=96.77  E-value=0.00042  Score=67.64  Aligned_cols=81  Identities=12%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|...    . +-...+........ . .+....          ......+.++..
T Consensus       224 ~~~~~~~~DiwSlG~il~elltg~~Pf~~----~-~~~~~~~~i~~~~~-~-~~~~~~----------~~~s~~~~~li~  286 (387)
T 1kob_A          224 REPVGFYTDMWAIGVLGYVLLSGLSPFAG----E-DDLETLQNVKRCDW-E-FDEDAF----------SSVSPEAKDFIK  286 (387)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHSCCSSCC----S-SHHHHHHHHHHCCC-C-CCSSTT----------TTSCHHHHHHHH
T ss_pred             CCCCCCcccEeeHhHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCC-C-CCcccc----------ccCCHHHHHHHH
Confidence            34466789999999999999999999542    1 22222222211110 0 011110          011223678899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       287 ~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          287 NLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             TTSCSSGGGSCCHHHHHT
T ss_pred             HHcCCChhHCcCHHHHhh
Confidence            999999999999999965

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=96.76  E-value=0.00026  Score=66.89  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=51.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeeccc-----ccccc--ccccchhhH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANL-----LSWKD--KHFMTKEQC  453 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l-----~~~~~--~~~~~~~~~  453 (495)
                      ..+.++||||+|+++.|++||+.|......  ......+.......    ...+.+...     .....  .........
T Consensus       196 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (311)
T 3niz_A          196 KYSTSVDIWSIGCIFAEMITGKPLFPGVTD--DDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGF  273 (311)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSST--TTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTC
T ss_pred             CCCchHHhHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCccc
Confidence            356789999999999999999999654322  12222222222111    000000000     00000  000000112


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|...+|.+||++.|+++
T Consensus       274 ~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          274 CQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            234678899999999999999999864

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=96.75  E-value=0.00059  Score=67.71  Aligned_cols=78  Identities=14%  Similarity=0.233  Sum_probs=47.7

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ...+.++||||+||++.|++| |+.|.....    .  ................+            ....-..+.++..
T Consensus       204 ~~~t~~~DiwSlG~il~ellt~g~~pf~~~~----~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~li~  265 (432)
T 3p23_A          204 ENPTYTVDIFSAGCVFYYVISEGSHPFGKSL----Q--RQANILLGACSLDCLHP------------EKHEDVIARELIE  265 (432)
T ss_dssp             -CCCTHHHHHHHHHHHHHHHTTSCBTTBSTT----T--HHHHHHTTCCCCTTSCT------------TCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHcCCCCCcchhh----H--HHHHHHhccCCccccCc------------cccccHHHHHHHH
Confidence            345568999999999999999 888853211    1  11111111111100000            0112233567899


Q ss_pred             hcCCCCccCchhHHHHH
Q 011044          463 ECTVESPIRESTQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~  479 (495)
                      .|.+.+|.+||++.||+
T Consensus       266 ~~L~~dP~~Rps~~evl  282 (432)
T 3p23_A          266 KMIAMDPQKRPSAKHVL  282 (432)
T ss_dssp             HHSCSSGGGSCCHHHHH
T ss_pred             HHHhCCHhhCCCHHHHH
Confidence            99999999999999996

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=96.74  E-value=0.00061  Score=65.92  Aligned_cols=79  Identities=13%  Similarity=0.118  Sum_probs=49.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|++||+.|...    . +-....+....... ....+.           .......+.++...|
T Consensus       281 ~~~~~~Di~slG~il~ell~g~~pf~~----~-~~~~~~~~i~~~~~-~~~~~~-----------~~~~~~~~~~li~~~  343 (365)
T 2y7j_A          281 GYGKEVDLWACGVILFTLLAGSPPFWH----R-RQILMLRMIMEGQY-QFSSPE-----------WDDRSSTVKDLISRL  343 (365)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCC-CCCHHH-----------HSSSCHHHHHHHHHH
T ss_pred             CCCchhhHHhHHHHHHHHHHCCCCCCC----C-CHHHHHHHHHhCCC-CCCCcc-----------cccCCHHHHHHHHHH
Confidence            467789999999999999999999642    1 11111111111110 000000           001123367889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       344 L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          344 LQVDPEARLTAEQALQ  359 (365)
T ss_dssp             SCSSTTTSCCHHHHHH
T ss_pred             cCCChhHCcCHHHHhc
Confidence            9999999999999864

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=96.73  E-value=0.00029  Score=65.86  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+|+++.|++||+.|.+.     ............... .     +-.          .....+.++..
T Consensus       189 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~-----~~~~~~~~~~~~~~~-~-----~~~----------~~~~~~~~li~  247 (294)
T 2rku_A          189 KKGHSFEVDVWSIGCIMYTLLVGKPPFET-----SCLKETYLRIKKNEY-S-----IPK----------HINPVAASLIQ  247 (294)
T ss_dssp             TSCBCTHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHTTCC-C-----CCT----------TSCHHHHHHHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHhhccC-C-----Ccc----------ccCHHHHHHHH
Confidence            34456789999999999999999999643     122222222211110 0     000          11123667888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       248 ~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          248 KMLQTDPTARPTINELLN  265 (294)
T ss_dssp             HHTCSSGGGSCCGGGGGG
T ss_pred             HHcccChhhCcCHHHHhh
Confidence            999999999999999865

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=96.72  E-value=0.00046  Score=65.46  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=51.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-c----ceeeecc--ccccc-cccccchhhHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-V----MEVVDAN--LLSWK-DKHFMTKEQCM  454 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-~----~~v~d~~--l~~~~-~~~~~~~~~~~  454 (495)
                      ....+.++||||||+++.|++||+.|.....  .......+....... .    .....++  +.... ...........
T Consensus       193 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 1blx_A          193 QSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID  270 (326)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCC
T ss_pred             cCCCCcchhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCC
Confidence            3456778999999999999999999954311  111111111111100 0    0000000  00000 00000001123


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.|+++
T Consensus       271 ~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          271 ELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            34678899999999999999999863

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=96.69  E-value=0.00043  Score=65.62  Aligned_cols=67  Identities=12%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||||+++.|++||+.|.+..       .........      ...              .....+.++...|.+
T Consensus       227 ~~~~Di~slG~il~el~~g~~pf~~~-------~~~~~~~~~------~~~--------------~~~~~~~~li~~~l~  279 (320)
T 3a99_A          227 GRSAAVWSLGILLYDMVCGDIPFEHD-------EEIIRGQVF------FRQ--------------RVSSECQHLIRWCLA  279 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHHCCCC------CSS--------------CCCHHHHHHHHHHTC
T ss_pred             CccchHHhHHHHHHHHHHCCCCCCCh-------hhhhccccc------ccc--------------cCCHHHHHHHHHHcc
Confidence            45789999999999999999996421       111111000      000              111236788899999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       280 ~dp~~Rps~~~ll~  293 (320)
T 3a99_A          280 LRPSDRPTFEEIQN  293 (320)
T ss_dssp             SSGGGSCCHHHHHT
T ss_pred             CChhhCcCHHHHhc
Confidence            99999999999965

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=96.69  E-value=0.00032  Score=67.04  Aligned_cols=67  Identities=13%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||||+++.|+++|+.|......           .....   ...+.             .....+.++...|..
T Consensus       208 ~~~~DiwslG~il~el~~g~~pf~~~~~-----------~~~~~---~~~~~-------------~~~~~l~~li~~~L~  260 (335)
T 3dls_A          208 GPELEMWSLGVTLYTLVFEENPFCELEE-----------TVEAA---IHPPY-------------LVSKELMSLVSGLLQ  260 (335)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSCSSGGG-----------GTTTC---CCCSS-------------CCCHHHHHHHHHHTC
T ss_pred             CCcccchhHHHHHHHHHhCCCchhhHHH-----------HHhhc---cCCCc-------------ccCHHHHHHHHHHcc
Confidence            5678999999999999999999643110           00000   00000             011236778889999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.++++
T Consensus       261 ~dP~~Rps~~ell~  274 (335)
T 3dls_A          261 PVPERRTTLEKLVT  274 (335)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             CChhhCcCHHHHhc
Confidence            99999999999975

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=96.69  E-value=0.00013  Score=70.20  Aligned_cols=80  Identities=10%  Similarity=0.105  Sum_probs=50.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.|++||+.|....      -....+........  .++..          .......+.++..
T Consensus       207 ~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~i~~~~~~--~~~~~----------~~~~s~~~~~li~  268 (351)
T 3c0i_A          207 REPYGKPVDVWGCGVILFILLSGCLPFYGT------KERLFEGIIKGKYK--MNPRQ----------WSHISESAKDLVR  268 (351)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCSS------HHHHHHHHHHTCCC--CCHHH----------HTTSCHHHHHHHH
T ss_pred             CCCCCchHhhHHHHHHHHHHHHCCCCCCCc------HHHHHHHHHcCCCC--CCccc----------cccCCHHHHHHHH
Confidence            344577899999999999999999996431      11112211111100  00100          0011233677889


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       269 ~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          269 RMLMLDPAERITVYEALN  286 (351)
T ss_dssp             HHTCSSTTTSCCHHHHHT
T ss_pred             HHCCCChhHCcCHHHHhc
Confidence            999999999999999964

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=96.69  E-value=0.00038  Score=66.33  Aligned_cols=73  Identities=16%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+||++.|++||+.|.+.     .+.....+........   -+.             .....+..+...|..
T Consensus       192 ~~~~DiwslG~il~ell~g~~pf~~-----~~~~~~~~~i~~~~~~---~p~-------------~~s~~~~~li~~~L~  250 (328)
T 3fe3_A          192 GPEVDVWSLGVILYTLVSGSLPFDG-----QNLKELRERVLRGKYR---IPF-------------YMSTDCENLLKRFLV  250 (328)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC---CCT-------------TSCHHHHHHHHHHCC
T ss_pred             CchhhhhhhHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCCC---CCC-------------CCCHHHHHHHHHHCC
Confidence            3578999999999999999999542     2344444333322110   000             011225678889999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       251 ~dP~~R~t~~eil~  264 (328)
T 3fe3_A          251 LNPIKRGTLEQIMK  264 (328)
T ss_dssp             SSTTTSCCHHHHTT
T ss_pred             CChhHCcCHHHHhc
Confidence            99999999999854

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=96.67  E-value=0.00032  Score=66.22  Aligned_cols=79  Identities=11%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|...    . +-.............   .+..         ........+.++...
T Consensus       194 ~~~~~~~Di~slG~~l~~ll~g~~pf~~----~-~~~~~~~~~~~~~~~---~~~~---------~~~~~~~~l~~li~~  256 (311)
T 3ork_A          194 DSVDARSDVYSLGCVLYEVLTGEPPFTG----D-SPVSVAYQHVREDPI---PPSA---------RHEGLSADLDAVVLK  256 (311)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCSCCC----S-SHHHHHHHHHHCCCC---CHHH---------HSTTCCHHHHHHHHH
T ss_pred             CCCCchHhHHHHHHHHHHHHhCCCCCCC----C-ChHHHHHHHhcCCCC---Cccc---------ccCCCCHHHHHHHHH
Confidence            3456789999999999999999999542    1 222222222211100   0000         000122346788999


Q ss_pred             cCCCCccCchhHHHHH
Q 011044          464 CTVESPIRESTQRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~  479 (495)
                      |.+.+|.+||+..+++
T Consensus       257 ~l~~dP~~R~~~~~~l  272 (311)
T 3ork_A          257 ALAKNPENRYQTAAEM  272 (311)
T ss_dssp             HTCSSGGGSCSSHHHH
T ss_pred             HHhcCHhhChhhHHHH
Confidence            9999999999877765

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=96.67  E-value=0.00051  Score=64.22  Aligned_cols=81  Identities=12%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+|+++.|+++|+.|....     +-....+........ ...+           ........+.++..
T Consensus       203 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~l~~li~  265 (298)
T 1phk_A          203 HPGYGKEVDMWSTGVIMYTLLAGSPPFWHR-----KQMLMLRMIMSGNYQ-FGSP-----------EWDDYSDTVKDLVS  265 (298)
T ss_dssp             SCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCC-CCTT-----------TGGGSCHHHHHHHH
T ss_pred             cccCCcccccHhHHHHHHHHHHCCCCCcCc-----cHHHHHHHHhcCCcc-cCcc-----------cccccCHHHHHHHH
Confidence            345677899999999999999999996421     222222222111100 0000           01122334778899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       266 ~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          266 RFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             HHCCSSGGGSCCHHHHTT
T ss_pred             HHccCCcccCCCHHHHHh
Confidence            999999999999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=96.65  E-value=0.00018  Score=68.45  Aligned_cols=84  Identities=7%  Similarity=0.095  Sum_probs=49.7

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCC--CCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG--EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~--~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ...+.++||||+|+++.|++||+.|.......  ........+....... .. +..          ........+.++.
T Consensus       184 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~----------~~~~~s~~~~~li  251 (325)
T 3kn6_A          184 NGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-SF-EGE----------AWKNVSQEAKDLI  251 (325)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-CC-CSH----------HHHTSCHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-CC-Ccc----------cccCCCHHHHHHH
Confidence            34566899999999999999999997542211  1222222222222111 00 000          0011223366788


Q ss_pred             hhcCCCCccCchhHHHHH
Q 011044          462 MECTVESPIRESTQRKLL  479 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~  479 (495)
                      ..|...+|.+||++.|++
T Consensus       252 ~~~L~~dP~~Rpt~~ell  269 (325)
T 3kn6_A          252 QGLLTVDPNKRLKMSGLR  269 (325)
T ss_dssp             HHHHCCCTTTCCCTTTST
T ss_pred             HHHCCCChhHCCCHHHHh
Confidence            899999999999999875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=96.65  E-value=0.00047  Score=65.90  Aligned_cols=73  Identities=15%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+|+++.|+++|+.|.+.......             ...+..... .       ........+.++...|..
T Consensus       186 ~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-------------~~~i~~~~~-~-------~p~~~s~~~~~li~~~L~  244 (336)
T 3h4j_B          186 GPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-------------FKKVNSCVY-V-------MPDFLSPGAQSLIRRMIV  244 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-------------BCCCCSSCC-C-------CCTTSCHHHHHHHHTTSC
T ss_pred             CCccchhHHHHHHHHHHhCCCCCCCccHHHH-------------HHHHHcCCC-C-------CcccCCHHHHHHHHHHcC
Confidence            5679999999999999999999754221110             000000000 0       000112236678999999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       245 ~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          245 ADPMQRITIQEIRR  258 (336)
T ss_dssp             SSGGGSCCHHHHTT
T ss_pred             CChhHCcCHHHHHh
Confidence            99999999999853

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=96.65  E-value=0.00025  Score=69.26  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=24.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCcc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDE  411 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~  411 (495)
                      ...+.++||||+||++.|++||+.|...
T Consensus       212 ~~~~~~~DiwslG~il~el~~g~~pf~~  239 (389)
T 3gni_B          212 QGYDAKSDIYSVGITACELANGHVPFKD  239 (389)
T ss_dssp             SCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             CCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            3467789999999999999999999653

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=96.64  E-value=0.00026  Score=66.90  Aligned_cols=94  Identities=11%  Similarity=0.092  Sum_probs=50.2

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc----ee-------eeccccccccccccchhhH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM----EV-------VDANLLSWKDKHFMTKEQC  453 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~----~v-------~d~~l~~~~~~~~~~~~~~  453 (495)
                      ..+.++||||||+++.|++||+.|......  ......+....+....    ++       ...................
T Consensus       201 ~~~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (320)
T 2i6l_A          201 NYTKAIDMWAAGCIFAEMLTGKTLFAGAHE--LEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGI  278 (320)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTC
T ss_pred             cCCchhhhHhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchh
Confidence            456789999999999999999999643210  1111111111110000    00       0000000000000000112


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|.+.+|.+||++.|+++
T Consensus       279 ~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          279 SREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            344778999999999999999999964

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=96.62  E-value=0.00061  Score=65.85  Aligned_cols=80  Identities=14%  Similarity=0.127  Sum_probs=50.0

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.|++||+.|...    . +-............ ..-.+           ........+.++...
T Consensus       205 ~~~~~~~DiwslG~il~~ll~g~~Pf~~----~-~~~~~~~~i~~~~~-~~~~~-----------~~~~~~~~~~~li~~  267 (362)
T 2bdw_A          205 DPYSKPVDIWACGVILYILLVGYPPFWD----E-DQHRLYAQIKAGAY-DYPSP-----------EWDTVTPEAKSLIDS  267 (362)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCC-CCCTT-----------GGGGSCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCC----C-CHHHHHHHHHhCCC-CCCcc-----------cccCCCHHHHHHHHH
Confidence            3456789999999999999999999532    1 22222222211110 00000           011112336678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       268 ~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          268 MLTVNPKKRITADQALK  284 (362)
T ss_dssp             HSCSSGGGSCCHHHHTT
T ss_pred             HcCCChhhCcCHHHHhc
Confidence            99999999999999853

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=96.61  E-value=0.00076  Score=65.16  Aligned_cols=77  Identities=12%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             CCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCCC
Q 011044          389 NGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVES  468 (495)
Q Consensus       389 ~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  468 (495)
                      ++||||+|+++.|+++|+.|...... .......++.........   +   .        .......+.++...|...+
T Consensus       198 ~~DiwslG~il~ell~g~~Pf~~~~~-~~~~~~~~~~~~~~~~~~---~---~--------~~~~s~~~~~li~~~L~~d  262 (361)
T 3uc3_A          198 IADVWSCGVTLYVMLVGAYPFEDPEE-PRDYRKTIQRILSVKYSI---P---D--------DIRISPECCHLISRIFVAD  262 (361)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHHHHHHTTCCCC---C---T--------TSCCCHHHHHHHHHHSCSC
T ss_pred             eeeeehhHHHHHHHHhCCCCCCCCcc-HHHHHHHHHHHhcCCCCC---C---C--------cCCCCHHHHHHHHHHccCC
Confidence            38999999999999999999653221 233444444333222100   0   0        0001123667899999999


Q ss_pred             ccCchhHHHHHH
Q 011044          469 PIRESTQRKLLQ  480 (495)
Q Consensus       469 p~~Rp~m~~v~~  480 (495)
                      |.+||++.|+++
T Consensus       263 P~~Rps~~ell~  274 (361)
T 3uc3_A          263 PATRISIPEIKT  274 (361)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhHCcCHHHHHh
Confidence            999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=96.61  E-value=0.0003  Score=67.06  Aligned_cols=91  Identities=14%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH--HhCC------------C-cceeeeccccccccccccc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND--LLSI------------S-VMEVVDANLLSWKDKHFMT  449 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~--~~~~------------~-~~~v~d~~l~~~~~~~~~~  449 (495)
                      ..+.++||||+|+++.|++||+.|...    ........+.  ....            . ......+.+...... ...
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~pf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  275 (331)
T 4aaa_A          201 KYGKAVDVWAIGCLVTEMFMGEPLFPG----DSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPL-ERR  275 (331)
T ss_dssp             TCCTHHHHHHHHHHHHHHHHSSCSCCC----SSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCH-HHH
T ss_pred             CcchHHHHHHHHHHHHHHHhCCCCCCC----CCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchh-hhc
Confidence            456789999999999999999988542    2111111110  0000            0 000111111000000 000


Q ss_pred             hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .......+.++...|...+|.+||++.|+++
T Consensus       276 ~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          276 YPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             STTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             ccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0122345788999999999999999999964

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=96.60  E-value=0.00074  Score=63.26  Aligned_cols=70  Identities=14%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+||+||++.||+||+.|..    + .+..+........... +  +.-             .-..+..+...|
T Consensus       202 ~y~~~~DiwSlGvilyemltG~~PF~----~-~~~~~~~~~i~~~~~~-~--p~~-------------~s~~~~~li~~~  260 (304)
T 3ubd_A          202 GHTQSADWWSFGVLMFEMLTGTLPFQ----G-KDRKETMTMILKAKLG-M--PQF-------------LSPEAQSLLRML  260 (304)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSC----C-SSHHHHHHHHHHCCCC-C--CTT-------------SCHHHHHHHHHH
T ss_pred             CCCCCCcccchHHHHHHHHhCCCCCC----C-cCHHHHHHHHHcCCCC-C--CCc-------------CCHHHHHHHHHH
Confidence            34567999999999999999999953    2 2333333332221110 0  100             112256778899


Q ss_pred             CCCCccCchhH
Q 011044          465 TVESPIRESTQ  475 (495)
Q Consensus       465 ~~~~p~~Rp~m  475 (495)
                      .+.+|.+||+.
T Consensus       261 L~~dP~~R~ta  271 (304)
T 3ubd_A          261 FKRNPANRLGA  271 (304)
T ss_dssp             TCSSGGGSTTC
T ss_pred             cccCHHHCCCC
Confidence            99999999984

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=96.59  E-value=0.001  Score=64.49  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|...+|.+||++.|+++
T Consensus       292 ~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          292 ASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             HHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence            445788999999999999999999964

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=96.59  E-value=0.00035  Score=66.36  Aligned_cols=94  Identities=10%  Similarity=0.049  Sum_probs=51.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc----eeeecc------cccccccc-ccchhhH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM----EVVDAN------LLSWKDKH-FMTKEQC  453 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~----~v~d~~------l~~~~~~~-~~~~~~~  453 (495)
                      ..+.++||||+|+++.|++||+.|....-  .......+.........    .+.+..      ........ .......
T Consensus       177 ~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (324)
T 3mtl_A          177 DYSTQIDMWGVGCIFYEMATGRPLFPGST--VEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRL  254 (324)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTS
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCC
Confidence            35678999999999999999999864321  11222222222211111    110000      00000000 0000011


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      -..+.++...|...+|.+||++.|+++
T Consensus       255 ~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          255 DSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            234678899999999999999999964

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=96.56  E-value=0.00035  Score=65.49  Aligned_cols=75  Identities=17%  Similarity=0.324  Sum_probs=44.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.||++   |.    .+..+....+........     +..          ..+.......+...
T Consensus       205 ~~y~~~~DiwSlGvilyell~---Pf----~~~~~~~~~~~~~~~~~~-----p~~----------~~~~~~~~~~li~~  262 (299)
T 4g31_A          205 NSYSHKVDIFSLGLILFELLY---PF----STQMERVRTLTDVRNLKF-----PPL----------FTQKYPCEYVMVQD  262 (299)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHS---CC----SSHHHHHHHHHHHHTTCC-----CHH----------HHHHCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcc---CC----CCccHHHHHHHHHhcCCC-----CCC----------CcccCHHHHHHHHH
Confidence            345678999999999999996   53    221111111111111110     000          01111224567889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.|+++
T Consensus       263 ~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          263 MLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HTCSSGGGSCCHHHHHT
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999865

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=96.56  E-value=0.00025  Score=70.30  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=24.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++|||||||++.|++||+.|..
T Consensus       273 ~~~~~~~~DiwSlG~il~elltG~~pf~  300 (429)
T 3kvw_A          273 GARYGMPIDMWSLGCILAELLTGYPLLP  300 (429)
T ss_dssp             TBCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence            4456778999999999999999998854

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=96.56  E-value=0.00061  Score=70.80  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=54.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce-eeecccccccc------ccccchhhHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME-VVDANLLSWKD------KHFMTKEQCMS  455 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~-v~d~~l~~~~~------~~~~~~~~~~~  455 (495)
                      ....+.++||||||+++.|++||+.|...    +.....|.+......... +..........      ...........
T Consensus       197 ~~~~s~ksDIwSLGviLyeLltG~~Pf~~----~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~  272 (676)
T 3qa8_A          197 QKKYTVTVDYWSFGTLAFECITGFRPFLP----NWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG  272 (676)
T ss_dssp             CSCCSTTHHHHHHHHHHHHHHSSCSSCCS----SCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHCCCCCCc----ccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhH
Confidence            45567789999999999999999999643    223334433322111111 11111100000      00001122445


Q ss_pred             HHHHHHhhcCCCCccCchhHHHH-----HHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKL-----LQDSQKL  485 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v-----~~~l~~i  485 (495)
                      .+.++...|...+|.+||++.++     .+.++.+
T Consensus       273 ~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~i  307 (676)
T 3qa8_A          273 KLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSI  307 (676)
T ss_dssp             HHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHH
T ss_pred             HHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHH
Confidence            67889999999999999999885     4555554

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=96.56  E-value=0.00065  Score=63.78  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|++||+.|....     +-............ .. +...          .......+.++...
T Consensus       182 ~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~~-~~-~~~~----------~~~~~~~~~~li~~  244 (304)
T 2jam_A          182 KPYSKAVDCWSIGVITYILLCGYPPFYEE-----TESKLFEKIKEGYY-EF-ESPF----------WDDISESAKDFICH  244 (304)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHCCC-CC-CTTT----------TTTSCHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHcCCC-CC-Cccc----------cccCCHHHHHHHHH
Confidence            34567899999999999999999995421     22222222111110 00 0000          01112346788999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       245 ~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          245 LLEKDPNERYTCEKALS  261 (304)
T ss_dssp             HHCSSTTTSCCHHHHHT
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999964

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=96.56  E-value=0.00055  Score=65.20  Aligned_cols=94  Identities=14%  Similarity=-0.016  Sum_probs=49.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh-CCC--cceeee-ccccccccc-cccch-----hhHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL-SIS--VMEVVD-ANLLSWKDK-HFMTK-----EQCMS  455 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~-~~~--~~~v~d-~~l~~~~~~-~~~~~-----~~~~~  455 (495)
                      .+.++||||+||++.|+++|+.|....-. ...+...++..- +..  ...+.. +........ .....     ...-.
T Consensus       215 ~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (329)
T 3gbz_A          215 YSTSVDIWSIACIWAEMLMKTPLFPGDSE-IDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDD  293 (329)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCcCCCCH-HHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCH
Confidence            57789999999999999999998542110 001111111110 100  000000 000000000 00000     01123


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.++...|...+|.+||++.|+++
T Consensus       294 ~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          294 EGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhC
Confidence            4678899999999999999999864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=96.54  E-value=0.00096  Score=66.36  Aligned_cols=81  Identities=11%  Similarity=0.139  Sum_probs=50.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.|+++|+.|...    . +-....+....... ..-.+.           .......+.++..
T Consensus       187 ~~~~~~~~DIwSlGvilyell~G~~Pf~~----~-~~~~~~~~i~~~~~-~~~~~~-----------~~~~s~~~~~li~  249 (444)
T 3soa_A          187 KDPYGKPVDLWACGVILYILLVGYPPFWD----E-DQHRLYQQIKAGAY-DFPSPE-----------WDTVTPEAKDLIN  249 (444)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSCCC----S-SHHHHHHHHHHTCC-CCCTTT-----------TTTSCHHHHHHHH
T ss_pred             CCCCCCccccHHHHHHHHHHHhCCCCCCC----c-cHHHHHHHHHhCCC-CCCccc-----------cccCCHHHHHHHH
Confidence            34466789999999999999999999532    1 22222222211110 000000           0111233667888


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       250 ~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          250 KMLTINPSKRITAAEALK  267 (444)
T ss_dssp             HHSCSSTTTSCCHHHHHH
T ss_pred             HHcCCChhHCCCHHHHhc
Confidence            999999999999999964

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=96.52  E-value=0.00051  Score=63.98  Aligned_cols=95  Identities=16%  Similarity=0.079  Sum_probs=50.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC---Ccce-----eeecccccccc-ccccchhhHHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI---SVME-----VVDANLLSWKD-KHFMTKEQCMS  455 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~---~~~~-----v~d~~l~~~~~-~~~~~~~~~~~  455 (495)
                      ..+.++||||+|+++.|++||+.|....-. ...+...++..-..   ....     -.++.+..... .+.........
T Consensus       177 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (288)
T 1ob3_A          177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSE-ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDE  255 (288)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCH
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCH
Confidence            356789999999999999999998643110 01111111111000   0000     01111110000 00000011223


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.++...|...+|.+||++.|+++
T Consensus       256 ~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          256 SGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHhc
Confidence            4678899999999999999999864

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=96.47  E-value=0.00051  Score=65.04  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC---c-cee-----eeccccccccc------cccc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS---V-MEV-----VDANLLSWKDK------HFMT  449 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~---~-~~v-----~d~~l~~~~~~------~~~~  449 (495)
                      ..+.++||||+|+++.|++||+.|....-  .......+.......   . ..+     .++.+......      ....
T Consensus       185 ~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (317)
T 2pmi_A          185 TYSTSIDIWSCGCILAEMITGKPLFPGTN--DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHT  262 (317)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGC
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccc
Confidence            35678999999999999999999854211  111111121111110   0 000     00000000000      0000


Q ss_pred             hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.....+.++...|...+|.+||++.|+++
T Consensus       263 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          263 KEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             SSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence            0011234778899999999999999999853

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=96.44  E-value=0.00037  Score=66.24  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|+++|..|....       ............     +.          ........+.++...
T Consensus       251 ~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~~~~~~~~-----~~----------~~~~~~~~~~~li~~  308 (332)
T 3qd2_B          251 NNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIITDVRNLKF-----PL----------LFTQKYPQEHMMVQD  308 (332)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHHHHHTTCC-----CH----------HHHHHCHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHHHhhccCC-----Cc----------ccccCChhHHHHHHH
Confidence            34677899999999999999987663211       111111111110     00          011222335678899


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.|+++
T Consensus       309 ~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          309 MLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHCSSGGGSCCHHHHHH
T ss_pred             HccCCCCcCCCHHHHhh
Confidence            99999999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=96.43  E-value=0.00076  Score=65.70  Aligned_cols=90  Identities=13%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH--HhCCC-ccee--eecccc-----ccccc-cc-cchhhH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND--LLSIS-VMEV--VDANLL-----SWKDK-HF-MTKEQC  453 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~--~~~~~-~~~v--~d~~l~-----~~~~~-~~-~~~~~~  453 (495)
                      .+.++||||+|+++.|+++|+.|...    ......+.+.  ..... ...+  .++...     ..... +. ......
T Consensus       219 ~~~~~DiwslG~il~ell~g~~pf~~----~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (383)
T 3eb0_A          219 YTPSIDLWSIGCVFGELILGKPLFSG----ETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGT  294 (383)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCC----SSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTC
T ss_pred             CCcchhhhhHHHHHHHHHhCCCCCCC----CChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCC
Confidence            56789999999999999999998542    2222121111  11100 0000  000000     00000 00 000112


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      ...+.++...|...+|.+||++.|++
T Consensus       295 ~~~~~~li~~~L~~dP~~R~t~~e~l  320 (383)
T 3eb0_A          295 PSLAIDLLEQILRYEPDLRINPYEAM  320 (383)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHh
Confidence            33477899999999999999999996

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=96.42  E-value=0.0011  Score=63.91  Aligned_cols=78  Identities=10%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||||+++.|++||+.|...... ......+.+......      +.+          .......+.++...|.
T Consensus       239 ~~~~~DvwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~li~~~L  301 (355)
T 1vzo_A          239 HDKAVDWWSLGVLMYELLTGASPFTVDGE-KNSQAEISRRILKSE------PPY----------PQEMSALAKDLIQRLL  301 (355)
T ss_dssp             -CTHHHHHHHHHHHHHHHHSSCTTSCTTS-CCCHHHHHHHHHHCC------CCC----------CTTSCHHHHHHHHHHT
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCccCCc-cchHHHHHHHHhccC------CCC----------CcccCHHHHHHHHHHh
Confidence            46689999999999999999999653211 223333333322211      000          0011223667899999


Q ss_pred             CCCccCch-----hHHHHHH
Q 011044          466 VESPIRES-----TQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp-----~m~~v~~  480 (495)
                      ..+|.+||     ++.|+++
T Consensus       302 ~~dP~~R~~~~~~s~~ell~  321 (355)
T 1vzo_A          302 MKDPKKRLGCGPRDADEIKE  321 (355)
T ss_dssp             CSSGGGSTTSSTTTHHHHHT
T ss_pred             hhCHHHhcCCCCCCHHHHHc
Confidence            99999999     8888854

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=96.42  E-value=0.00021  Score=69.34  Aligned_cols=92  Identities=14%  Similarity=0.071  Sum_probs=50.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCcce----eeecc-------cccccc-cccc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISVME----VVDAN-------LLSWKD-KHFM  448 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~~~----v~d~~-------l~~~~~-~~~~  448 (495)
                      ...+.++||||+|+++.|++||+.|.+..     +....+....   .....+    +-+..       +..... ....
T Consensus       217 ~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (371)
T 4exu_A          217 MHYNQTVDIWSVGCIMAEMLTGKTLFKGK-----DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ  291 (371)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHH
T ss_pred             CCCCcHHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHH
Confidence            34677899999999999999999996431     1112222111   000000    00000       000000 0000


Q ss_pred             chhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          449 TKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       449 ~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ........+.++...|...+|.+||++.|+++
T Consensus       292 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          292 LFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             HSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence            00112344778899999999999999999864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=96.40  E-value=0.00083  Score=66.37  Aligned_cols=93  Identities=10%  Similarity=-0.004  Sum_probs=50.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCC----------Ccceeeeccccccccccc-cchhhH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSI----------SVMEVVDANLLSWKDKHF-MTKEQC  453 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~----------~~~~v~d~~l~~~~~~~~-~~~~~~  453 (495)
                      ..+.++|||||||++.||++|+.|...... ...+.+.++..-..          ...+..-+.+...  .+. ......
T Consensus       233 ~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~  309 (420)
T 1j1b_A          233 DYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAH--PWTKVFRPRT  309 (420)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCC--CHHHHSCTTS
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCC--CHHHhcCCCC
Confidence            456789999999999999999998542110 01122222211000          0001100111000  000 000011


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|...+|.+||++.|+++
T Consensus       310 ~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          310 PPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHhccCChhHCCCHHHHhC
Confidence            234778999999999999999999863

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.00086  Score=63.17  Aligned_cols=66  Identities=12%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             CCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCCC
Q 011044          388 TNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVE  467 (495)
Q Consensus       388 ~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~  467 (495)
                      .++||||+|+++.|++||+.|.+..       .........          +          .......+.++...|.+.
T Consensus       218 ~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~~----------~----------~~~~~~~~~~li~~~l~~  270 (312)
T 2iwi_A          218 LPATVWSLGILLYDMVCGDIPFERD-------QEILEAELH----------F----------PAHVSPDCCALIRRCLAP  270 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHHTCCC----------C----------CTTSCHHHHHHHHHHTCS
T ss_pred             ccchHHHHHHHHHHHHHCCCCCCCh-------HHHhhhccC----------C----------cccCCHHHHHHHHHHccC
Confidence            4789999999999999999995421       111110000          0          001122366788999999


Q ss_pred             CccCchhHHHHHH
Q 011044          468 SPIRESTQRKLLQ  480 (495)
Q Consensus       468 ~p~~Rp~m~~v~~  480 (495)
                      +|.+||++.|+++
T Consensus       271 ~p~~Rps~~e~l~  283 (312)
T 2iwi_A          271 KPSSRPSLEEILL  283 (312)
T ss_dssp             STTTSCCHHHHHH
T ss_pred             ChhhCcCHHHHhc
Confidence            9999999999975

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=96.38  E-value=0.00087  Score=65.61  Aligned_cols=95  Identities=17%  Similarity=0.096  Sum_probs=50.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcc--eeeeccccccc----ccc---ccchhhHHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM--EVVDANLLSWK----DKH---FMTKEQCMS  455 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~--~v~d~~l~~~~----~~~---~~~~~~~~~  455 (495)
                      ..+.++||||+||++.||++|+.|....-. ...+...++..-.....  .-.+++.....    ...   .........
T Consensus       218 ~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (394)
T 4e7w_A          218 NYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPP  296 (394)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCH
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCH
Confidence            356789999999999999999998542110 01111222111000000  00011110000    000   000011223


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.++...|...+|.+||++.|+++
T Consensus       297 ~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          297 DAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHhCCChhhCCCHHHHhc
Confidence            5788999999999999999999864

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=96.38  E-value=0.00078  Score=62.94  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=49.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHH---HHHHHh-CCC-c-cee-----eeccccccccccc-cchhhH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRR---WVNDLL-SIS-V-MEV-----VDANLLSWKDKHF-MTKEQC  453 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~---wv~~~~-~~~-~-~~v-----~d~~l~~~~~~~~-~~~~~~  453 (495)
                      .+.++||||+|+++.|++||+.|...    ......   .++..- +.. . ..+     ..+.+..+..... ......
T Consensus       181 ~~~~~Di~slG~~l~~l~~g~~pf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (299)
T 2r3i_A          181 YSTAVDIWSLGCIFAEMVTRRALFPG----DSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPL  256 (299)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCC----SSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchhhHhhCCCC
Confidence            56789999999999999999998542    211111   111110 000 0 000     0000000000000 000011


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|...+|.+||++.|+++
T Consensus       257 ~~~~~~li~~~L~~dP~~Rpt~~~~l~  283 (299)
T 2r3i_A          257 DEDGRSLLSQMLHYDPNKRISAKAALA  283 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            234678899999999999999999864

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=96.38  E-value=0.00038  Score=66.98  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCc----ceeeecc-------cccc-cccccc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISV----MEVVDAN-------LLSW-KDKHFM  448 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~----~~v~d~~-------l~~~-~~~~~~  448 (495)
                      ...+.++||||+|+++.|++||+.|....     +....+....   ....    ..+.+..       +... ......
T Consensus       199 ~~~~~~~Di~slG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (353)
T 3coi_A          199 MHYNQTVDIWSVGCIMAEMLTGKTLFKGK-----DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ  273 (353)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCSSBSS-----CHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTT
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHH
Confidence            34567899999999999999999996431     1111111111   0000    0000000       0000 000000


Q ss_pred             chhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          449 TKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       449 ~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ........+.++...|...+|.+||++.|+++
T Consensus       274 ~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          274 LFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             TCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            01122344778899999999999999999864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=96.36  E-value=0.0015  Score=65.39  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ...+.++||||+||++.||++|+.|..
T Consensus       238 ~~~~~~~DiwSlG~il~ell~g~~pF~  264 (464)
T 3ttj_A          238 MGYKENVDIWSVGCIMGEMVRHKILFP  264 (464)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence            346678999999999999999999853

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=96.34  E-value=0.00074  Score=64.46  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||||+++.|++||+.|.+.     ...............      .+-.          .....+.++...|
T Consensus       217 ~~~~~~Di~slG~il~~l~~g~~pf~~-----~~~~~~~~~~~~~~~------~~~~----------~~~~~~~~li~~~  275 (335)
T 2owb_A          217 GHSFEVDVWSIGCIMYTLLVGKPPFET-----SCLKETYLRIKKNEY------SIPK----------HINPVAASLIQKM  275 (335)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHTCC------CCCT----------TSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHCcCCCCC-----CCHHHHHHHHhcCCC------CCCc----------cCCHHHHHHHHHH
Confidence            356789999999999999999999642     122222222111110      0000          1112366788899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       276 l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          276 LQTDPTARPTINELLN  291 (335)
T ss_dssp             TCSSGGGSCCGGGGGG
T ss_pred             ccCChhHCcCHHHHhc
Confidence            9999999999999864

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=96.34  E-value=0.0004  Score=67.07  Aligned_cols=92  Identities=14%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CC-Cccee-----------eecccccccc-ccc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SI-SVMEV-----------VDANLLSWKD-KHF  447 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~-~~~~v-----------~d~~l~~~~~-~~~  447 (495)
                      ...+.++||||+|+++.|++||+.|....     +....++...   .. ...++           ....+..... ...
T Consensus       209 ~~~~~~~DiwslG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (362)
T 3pg1_A          209 KGFTKLVDMWSAGCVMAEMFNRKALFRGS-----TFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWT  283 (362)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHH
T ss_pred             CCCCcHhHHHhHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHH
Confidence            34567899999999999999999996431     1111111111   00 00000           0000000000 000


Q ss_pred             cchhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          448 MTKEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       448 ~~~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .........+.++...|.+.+|.+||++.|+++
T Consensus       284 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          284 AVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             HHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            000112234778999999999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=96.31  E-value=0.0013  Score=66.24  Aligned_cols=79  Identities=9%  Similarity=0.066  Sum_probs=49.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.|+++|+.|...    . +-...++........ .-.+           ........+.++...|
T Consensus       203 ~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~i~~~~~~-~~~~-----------~~~~~s~~~~~li~~~  265 (484)
T 3nyv_A          203 TYDEKCDVWSTGVILYILLSGCPPFNG----A-NEYDILKKVEKGKYT-FELP-----------QWKKVSESAKDLIRKM  265 (484)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHCCCC-CCSG-----------GGGGSCHHHHHHHHHH
T ss_pred             CCCCcceeHHHHHHHHHHHHCCCCCCC----C-CHHHHHHHHHcCCCC-CCCc-----------ccccCCHHHHHHHHHH
Confidence            356789999999999999999999642    1 222222221111100 0000           0111123366788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       266 L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          266 LTYVPSMRISARDALD  281 (484)
T ss_dssp             TCSSGGGSCCHHHHHT
T ss_pred             CCCChhHCcCHHHHhh
Confidence            9999999999999863

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=96.31  E-value=0.0011  Score=63.87  Aligned_cols=80  Identities=13%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||+||++.|+++|+.|...    . +-............ . .++...          ......+.++...
T Consensus       193 ~~~~~~~DiwslGvil~~ll~g~~Pf~~----~-~~~~~~~~i~~~~~-~-~~~~~~----------~~~s~~~~~li~~  255 (361)
T 2yab_A          193 EPLGLEADMWSIGVITYILLSGASPFLG----D-TKQETLANITAVSY-D-FDEEFF----------SQTSELAKDFIRK  255 (361)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSCCSSCC----S-SHHHHHHHHHTTCC-C-CCHHHH----------TTSCHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhcCC-C-CCchhc----------cCCCHHHHHHHHH
Confidence            3456789999999999999999999542    1 22233322222110 0 011110          0111235678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       256 ~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          256 LLVKETRKRLTIQEALR  272 (361)
T ss_dssp             HSCSSTTTSCCHHHHHT
T ss_pred             HCCCChhHCcCHHHHhc
Confidence            99999999999999863

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=96.30  E-value=0.001  Score=63.70  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||+||++.||++|+.|.....  +......+......... . ....          .......+.++...|.
T Consensus       197 ~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~~~~~~-~-~~~~----------~~~~s~~~~~li~~~L  262 (342)
T 2qr7_A          197 YDAACDIWSLGVLLYTMLTGYTPFANGP--DDTPEEILARIGSGKFS-L-SGGY----------WNSVSDTAKDLVSKML  262 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSSCSST--TSCHHHHHHHHHHCCCC-C-CSTT----------TTTSCHHHHHHHHHHT
T ss_pred             CCCccCeeeHhHHHHHHhcCCCCCCCCC--cCCHHHHHHHHccCCcc-c-Cccc----------cccCCHHHHHHHHHHC
Confidence            4567999999999999999999965321  12333333322221110 0 0000          0011223667888999


Q ss_pred             CCCccCchhHHHHHH
Q 011044          466 VESPIRESTQRKLLQ  480 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~~  480 (495)
                      ..+|.+||++.++++
T Consensus       263 ~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          263 HVDPHQRLTAALVLR  277 (342)
T ss_dssp             CSSTTTSCCHHHHTT
T ss_pred             CCChhHCcCHHHHhc
Confidence            999999999999853

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=96.30  E-value=0.0011  Score=64.13  Aligned_cols=93  Identities=15%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcce----eeecc---cc-c--cccc--cccchhhH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVME----VVDAN---LL-S--WKDK--HFMTKEQC  453 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~----v~d~~---l~-~--~~~~--~~~~~~~~  453 (495)
                      .+.++||||+|+++.|++||+.|.....  .......+.........+    +.+..   .. .  ....  ........
T Consensus       209 ~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (364)
T 3qyz_A          209 YTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNA  286 (364)
T ss_dssp             CSTHHHHHHHHHHHHHHHHSSCSSCCSS--GGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTS
T ss_pred             CCcchhHHHHHHHHHHHHHCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCC
Confidence            5678999999999999999999864321  112222222211111000    00000   00 0  0000  00000011


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ...+.++...|...+|.+||++.|+++
T Consensus       287 ~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          287 DSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            234778899999999999999999964

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=96.26  E-value=0.00065  Score=65.25  Aligned_cols=93  Identities=13%  Similarity=0.089  Sum_probs=50.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC----cceeeecccccccc---ccccchhhH-----
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS----VMEVVDANLLSWKD---KHFMTKEQC-----  453 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~----~~~v~d~~l~~~~~---~~~~~~~~~-----  453 (495)
                      .+.++||||+|+++.|++||+.|....-  .......+.......    ...+-+........   .......+.     
T Consensus       206 ~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (351)
T 3mi9_A          206 YGPPIDLWGAGCIMAEMWTRSPIMQGNT--EQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYV  283 (351)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHH
T ss_pred             CCcHhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhcc
Confidence            5678999999999999999999864321  111112222211110    00000000000000   000001111     


Q ss_pred             -HHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          454 -MSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       454 -~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                       -..+.++...|...+|.+||++.|+++
T Consensus       284 ~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          284 RDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence             123678899999999999999999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=96.22  E-value=0.0009  Score=64.23  Aligned_cols=95  Identities=11%  Similarity=0.050  Sum_probs=50.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC-----cceeeecccccc------cc--ccccch
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS-----VMEVVDANLLSW------KD--KHFMTK  450 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~-----~~~v~d~~l~~~------~~--~~~~~~  450 (495)
                      ...+.++||||+|+++.|+++|+.|....-  .......+.......     ...+.+.+....      ..  ......
T Consensus       198 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T 2b9h_A          198 AKYSRAMDVWSCGCILAELFLRRPIFPGRD--YRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF  275 (353)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHS
T ss_pred             CCccchhhHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhc
Confidence            345678999999999999999999854211  000111111111100     000000000000      00  000000


Q ss_pred             hhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          451 EQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       451 ~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ......+.++...|...+|.+||++.|+++
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          276 PRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            112334678899999999999999999964

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=96.22  E-value=0.0018  Score=65.28  Aligned_cols=79  Identities=11%  Similarity=0.080  Sum_probs=49.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.|+++|+.|...    . +-...++........ . +  ..        ........+.++...|
T Consensus       198 ~~~~~~DiwslG~il~~ll~g~~pf~~----~-~~~~~~~~i~~~~~~-~-~--~~--------~~~~~s~~~~~li~~~  260 (486)
T 3mwu_A          198 TYDEKCDVWSAGVILYILLSGTPPFYG----K-NEYDILKRVETGKYA-F-D--LP--------QWRTISDDAKDLIRKM  260 (486)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCCC-S-C--SG--------GGGGSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCCC-C-C--Cc--------ccCCCCHHHHHHHHHH
Confidence            356789999999999999999999542    1 222222222111100 0 0  00        0011122366888999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       261 L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          261 LTFHPSLRITATQCLE  276 (486)
T ss_dssp             TCSSTTTSCCHHHHHH
T ss_pred             cCCChhhCcCHHHHhc
Confidence            9999999999999965

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=96.20  E-value=0.0019  Score=65.30  Aligned_cols=79  Identities=9%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.|+++|+.|...     .+-...++....... ....+.           .......+.++...|
T Consensus       213 ~~~~~~DiwslG~il~~ll~g~~pf~~-----~~~~~~~~~i~~~~~-~~~~~~-----------~~~~s~~~~~li~~~  275 (494)
T 3lij_A          213 KYDEKCDVWSIGVILFILLAGYPPFGG-----QTDQEILRKVEKGKY-TFDSPE-----------WKNVSEGAKDLIKQM  275 (494)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-CCCSGG-----------GTTSCHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCC-CCCchh-----------cccCCHHHHHHHHHH
Confidence            466789999999999999999999542     222233332222111 000000           011122366788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       276 L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          276 LQFDSQRRISAQQALE  291 (494)
T ss_dssp             TCSSTTTSCCHHHHHT
T ss_pred             CCCChhhCccHHHHhc
Confidence            9999999999999963

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=96.20  E-value=0.0017  Score=63.76  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||+||++.||+||+.|..
T Consensus       213 ~~~~~DiwSlG~il~ell~g~~pf~  237 (405)
T 3rgf_A          213 YTKAIDIWAIGCIFAELLTSEPIFH  237 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ccchhhhHHHHHHHHHHHhCCCCCC
Confidence            5678999999999999999999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=96.16  E-value=0.0013  Score=66.54  Aligned_cols=79  Identities=10%  Similarity=0.054  Sum_probs=50.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.|+++|+.|...     .+-...++........  .+...          .......+.++...|
T Consensus       223 ~~~~~~DiwslG~il~~ll~g~~pf~~-----~~~~~~~~~i~~~~~~--~~~~~----------~~~~s~~~~~li~~~  285 (504)
T 3q5i_A          223 KYNEKCDVWSCGVIMYILLCGYPPFGG-----QNDQDIIKKVEKGKYY--FDFND----------WKNISDEAKELIKLM  285 (504)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC--CCHHH----------HTTSCHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCCC--CCccc----------cCCCCHHHHHHHHHH
Confidence            466789999999999999999999542     2223333322221110  00000          001122367788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       286 L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          286 LTYDYNKRCTAEEALN  301 (504)
T ss_dssp             TCSSTTTSCCHHHHHT
T ss_pred             cCCChhHCCCHHHHhc
Confidence            9999999999999963

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=96.12  E-value=0.00077  Score=65.29  Aligned_cols=91  Identities=20%  Similarity=0.201  Sum_probs=49.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHH---hCCCcceee----ec---c----cccc-ccccccc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDL---LSISVMEVV----DA---N----LLSW-KDKHFMT  449 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~---~~~~~~~v~----d~---~----l~~~-~~~~~~~  449 (495)
                      ..+.++||||+|+++.|+++|+.|...    .... ..++..   ......+..    ..   .    +... .......
T Consensus       202 ~~~~~~DiwslG~il~ell~g~~pf~~----~~~~-~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (367)
T 1cm8_A          202 RYTQTVDIWSVGCIMAEMITGKTLFKG----SDHL-DQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASI  276 (367)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSSCC----SSHH-HHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGT
T ss_pred             CCChhhhHHHHHHHHHHHHhCCCCCCC----CCHH-HHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHH
Confidence            456789999999999999999998542    2111 111111   111000000    00   0    0000 0000000


Q ss_pred             hhhHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          450 KEQCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       450 ~~~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .......+..+...|...+|.+||++.|+++
T Consensus       277 ~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          277 LTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             CTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence            0112234677889999999999999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=96.11  E-value=0.0013  Score=65.91  Aligned_cols=73  Identities=12%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+||++.|+++|+.|.+..     +.....+........   .+.             .....+.++...|..
T Consensus       194 ~~~~DiwSlGvil~elltG~~Pf~~~-----~~~~~~~~i~~~~~~---~p~-------------~~s~~~~~Li~~~L~  252 (476)
T 2y94_A          194 GPEVDIWSSGVILYALLCGTLPFDDD-----HVPTLFKKICDGIFY---TPQ-------------YLNPSVISLLKHMLQ  252 (476)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSSCCS-----SSHHHHHHHHTTCCC---CCT-------------TCCHHHHHHHHHHTC
T ss_pred             CCcceehhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCCcC---CCc-------------cCCHHHHHHHHHHcC
Confidence            45799999999999999999996531     222333322221100   010             011236678889999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       253 ~dP~~Rpt~~eil~  266 (476)
T 2y94_A          253 VDPMKRATIKDIRE  266 (476)
T ss_dssp             SSTTTSCCHHHHHT
T ss_pred             CCchhCcCHHHHHh
Confidence            99999999999964

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=96.06  E-value=0.0012  Score=62.00  Aligned_cols=73  Identities=8%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||+||++.||+||+.|..    +. +.....+....... .+ ...+          .    ....++...|.
T Consensus       211 y~~~~DiWSlGvilyeml~G~~PF~----~~-~~~~~~~~i~~~~~-~~-p~~~----------s----~~~~dli~~lL  269 (311)
T 4aw0_A          211 ACKSSDLWALGCIIYQLVAGLPPFR----AG-NEGLIFAKIIKLEY-DF-PEKF----------F----PKARDLVEKLL  269 (311)
T ss_dssp             BCHHHHHHHHHHHHHHHHHSSCSSC----CS-SHHHHHHHHHHTCC-CC-CTTC----------C----HHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC----CC-CHHHHHHHHHcCCC-CC-Cccc----------C----HHHHHHHHHHc
Confidence            4567999999999999999999953    22 22233332222211 00 1111          1    12556788999


Q ss_pred             CCCccCchhHHHHH
Q 011044          466 VESPIRESTQRKLL  479 (495)
Q Consensus       466 ~~~p~~Rp~m~~v~  479 (495)
                      ..+|.+||+..|+.
T Consensus       270 ~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          270 VLDATKRLGCEEME  283 (311)
T ss_dssp             CSSGGGSTTSGGGT
T ss_pred             cCCHhHCcChHHHc
Confidence            99999999999863

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=96.02  E-value=0.0021  Score=61.87  Aligned_cols=24  Identities=17%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             ccCCCcceeehhhhhhcccCCCCC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      .+.++|+||+||++.||+||+.|.
T Consensus       224 y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          224 QTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             CCCccchhhhHHHHHHHHHCCCCC
Confidence            456789999999999999999995

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=96.00  E-value=0.0017  Score=60.63  Aligned_cols=77  Identities=21%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+|+++.|+++   |..    .+.+-....+....... . ..+.+          .......+.++...|
T Consensus       207 ~~~~~~Di~slG~il~~l~~---p~~----~~~~~~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~li~~~  267 (303)
T 1zy4_A          207 HYNEKIDMYSLGIIFFEMIY---PFS----TGMERVNILKKLRSVSI-E-FPPDF----------DDNKMKVEKKIIRLL  267 (303)
T ss_dssp             CCCTHHHHHHHHHHHHHHHS---CCS----SHHHHHHHHHHHHSTTC-C-CCTTC----------CTTTSHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHh---ccC----CchhHHHHHHhcccccc-c-cCccc----------cccchHHHHHHHHHH
Confidence            46778999999999999998   321    11111222222211110 0 00111          112233467889999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.++++
T Consensus       268 l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          268 IDHDPNKRPGARTLLN  283 (303)
T ss_dssp             TCSSGGGSCCHHHHHH
T ss_pred             HhcCcccCcCHHHHhC
Confidence            9999999999999975

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=95.95  E-value=0.0038  Score=59.54  Aligned_cols=76  Identities=11%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+|+++.||++|+.|...     .+.....+.......      .+-.          .....+..+..
T Consensus       179 ~~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~s~~~~~li~  237 (337)
T 1o6l_A          179 DNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHERLFELILMEEI------RFPR----------TLSPEAKSLLA  237 (337)
T ss_dssp             SSCBCTTHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CCCT----------TSCHHHHHHHH
T ss_pred             CCCCCchhhcccchhHHHHHhcCCCCCCC-----CCHHHHHHHHHcCCC------CCCC----------CCCHHHHHHHH
Confidence            34467789999999999999999999532     222233332222111      0000          01123567788


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|...+|.+||     ++.|+.
T Consensus       238 ~lL~~dP~~R~g~~~~~~~ei~  259 (337)
T 1o6l_A          238 GLLKKDPKQRLGGGPSDAKEVM  259 (337)
T ss_dssp             HHTCSSTTTSTTCSTTTHHHHH
T ss_pred             HHhhcCHHHhcCCCCCCHHHHH
Confidence            99999999999     788774

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=95.94  E-value=0.0017  Score=63.32  Aligned_cols=27  Identities=15%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ...+.++||||+||++.||++|+.|..
T Consensus       206 ~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          206 TKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence            345678999999999999999998853

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=95.87  E-value=0.0014  Score=62.81  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHH---HHHHHHhCC---Ccceee-eccccccccccccc----hhhHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR---RWVNDLLSI---SVMEVV-DANLLSWKDKHFMT----KEQCM  454 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~---~wv~~~~~~---~~~~v~-d~~l~~~~~~~~~~----~~~~~  454 (495)
                      .+.++||||+|+++.|+++|+.|...    .....   +.++.....   ...++. -+............    .....
T Consensus       190 ~~~~~DiwslG~il~ell~g~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (346)
T 1ua2_A          190 YGVGVDMWAVGCILAELLLRVPFLPG----DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAG  265 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCC----SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCC
T ss_pred             CCchhhhHhHHHHHHHHHHCCCCCCC----CCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCC
Confidence            46679999999999999999887432    22211   111111100   000000 00000000000000    01122


Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+.++...|...+|.+||++.|+++
T Consensus       266 ~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          266 DDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             HHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHhc
Confidence            45778999999999999999999964

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=95.87  E-value=0.00089  Score=66.41  Aligned_cols=25  Identities=20%  Similarity=0.038  Sum_probs=22.0

Q ss_pred             HHHHHHhhcCCCCccCchhHHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .+.++...|...+|.+||++.|+++
T Consensus       337 ~~~dLl~~mL~~dP~~R~ta~e~L~  361 (432)
T 3n9x_A          337 DGINLLESMLKFNPNKRITIDQALD  361 (432)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHhcCCcccCCCHHHHhc
Confidence            3678889999999999999999864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.86  E-value=0.012  Score=47.40  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=16.6

Q ss_pred             CCEEEcccCcCccccCccccCCCCCCEEEccCCCC
Q 011044          154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKL  188 (495)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  188 (495)
                      |++|+|++|.++..-+..|..+++|++|+|++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444433333344455555555555544

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=95.81  E-value=0.0024  Score=63.58  Aligned_cols=77  Identities=10%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||||+++.||+||+.|...     .+..............      +-.          .....+.++..
T Consensus       323 ~~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~~------~p~----------~~~~~~~~li~  381 (446)
T 4ejn_A          323 DNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHEKLFELILMEEIR------FPR----------TLGPEAKSLLS  381 (446)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC------CCT----------TSCHHHHHHHH
T ss_pred             CCCCCCccchhhhHHHHHHHhhCCCCCCC-----CCHHHHHHHHHhCCCC------CCc----------cCCHHHHHHHH
Confidence            34567789999999999999999999642     2222333322221110      000          01123667889


Q ss_pred             hcCCCCccCch-----hHHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~~  480 (495)
                      .|...+|.+||     ++.|+++
T Consensus       382 ~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          382 GLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             HHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HHcccCHHHhCCCCCCCHHHHHh
Confidence            99999999999     8888853

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=95.78  E-value=0.0015  Score=63.16  Aligned_cols=94  Identities=12%  Similarity=0.085  Sum_probs=49.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc----ceeeeccc---cc---cccc--cccchhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV----MEVVDANL---LS---WKDK--HFMTKEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~----~~v~d~~l---~~---~~~~--~~~~~~~  452 (495)
                      ..+.++||||+|+++.||+||+.|....-  .......+.+......    ..+.....   ..   ....  .......
T Consensus       206 ~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (367)
T 2fst_X          206 HYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  283 (367)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTT
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCC
Confidence            45678999999999999999999853210  1111111111111110    00100000   00   0000  0000001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .-..+.++...|...+|.+||++.|+++
T Consensus       284 ~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          284 ANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence            1233678889999999999999999864

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=95.75  E-value=0.0045  Score=60.15  Aligned_cols=76  Identities=12%  Similarity=0.126  Sum_probs=47.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+||+||++.||+||+.|....  ........+........ .  -+             ......+..+...|
T Consensus       193 ~~~~~~DiwSlG~il~elltG~~Pf~~~--~~~~~~~~~~~~~~~~~-~--~p-------------~~~s~~~~~li~~l  254 (384)
T 4fr4_A          193 GYSFAVDWWSLGVTAYELLRGRRPYHIR--SSTSSKEIVHTFETTVV-T--YP-------------SAWSQEMVSLLKKL  254 (384)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCC--TTSCHHHHHHHHHHCCC-C--CC-------------TTSCHHHHHHHHHH
T ss_pred             CCCccceeechHHHHHHHHhCCCCCCCC--CCccHHHHHHHHhhccc-C--CC-------------CcCCHHHHHHHHHH
Confidence            3567899999999999999999996432  12233333222111110 0  00             01112367788899


Q ss_pred             CCCCccCchh-HHHH
Q 011044          465 TVESPIREST-QRKL  478 (495)
Q Consensus       465 ~~~~p~~Rp~-m~~v  478 (495)
                      ...+|.+||+ +.++
T Consensus       255 L~~dP~~R~s~~~~l  269 (384)
T 4fr4_A          255 LEPNPDQRFSQLSDV  269 (384)
T ss_dssp             SCSSGGGSCCSHHHH
T ss_pred             hcCCHhHhcccHHHH
Confidence            9999999998 5554

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=95.72  E-value=0.0039  Score=59.17  Aligned_cols=75  Identities=11%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+|+++.|+++|+.|...     .+....++.......      .+-.          .....+.++...
T Consensus       196 ~~~~~~~DiwslG~il~el~~g~~pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~~  254 (327)
T 3a62_A          196 SGHNRAVDWWSLGALMYDMLTGAPPFTG-----ENRKKTIDKILKCKL------NLPP----------YLTQEARDLLKK  254 (327)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHTCC------CCCT----------TSCHHHHHHHHH
T ss_pred             CCCCCcccchhHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHhCCC------CCCC----------CCCHHHHHHHHH
Confidence            3456789999999999999999999542     222233333222111      0000          011236678899


Q ss_pred             cCCCCccCch-----hHHHHH
Q 011044          464 CTVESPIRES-----TQRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp-----~m~~v~  479 (495)
                      |...+|.+||     +..|++
T Consensus       255 ~L~~dp~~R~~~~~~~~~e~l  275 (327)
T 3a62_A          255 LLKRNAASRLGAGPGDAGEVQ  275 (327)
T ss_dssp             HSCSCGGGSTTSSTTTHHHHH
T ss_pred             HHhcCHhhccCCCCCCHHHHH
Confidence            9999999999     555653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=95.64  E-value=0.0044  Score=63.68  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||+||++.||++|+.|..    +. +-....+....... .. +......       .   -.....+...
T Consensus       331 ~~y~~~~DiWSlGvilyeml~G~~Pf~----~~-~~~~~~~~i~~~~~-~~-~~~~~~~-------~---s~~~~dli~~  393 (573)
T 3uto_A          331 KPVGYYTDMWSVGVLSYILLSGLSPFG----GE-NDDETLRNVKSCDW-NM-DDSAFSG-------I---SEDGKDFIRK  393 (573)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSCCSSC----CS-SHHHHHHHHHTTCC-CC-CSGGGTT-------S---CHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCC----Cc-CHHHHHHHHHhCCC-CC-CcccccC-------C---CHHHHHHHHH
Confidence            345667899999999999999999953    22 22222222222110 00 0000000       0   1124567789


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       394 ~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          394 LLLADPNTRMTIHQALE  410 (573)
T ss_dssp             TSCSSGGGSCCHHHHHH
T ss_pred             HccCChhHCcCHHHHhc
Confidence            99999999999999864

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=95.63  E-value=0.0022  Score=62.57  Aligned_cols=25  Identities=12%  Similarity=0.238  Sum_probs=22.0

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+||++.||+||+.|..
T Consensus       240 ~~~~~DiWSlG~il~ell~G~~pF~  264 (398)
T 4b99_A          240 YTQAIDLWSVGCIFGEMLARRQLFP  264 (398)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CCChhheehhHHHHHHHHHCCCCCC
Confidence            4567899999999999999999953

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=95.60  E-value=0.0049  Score=59.43  Aligned_cols=80  Identities=8%  Similarity=-0.081  Sum_probs=47.1

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|||||||++.||+||+.|......+.                ...+..+.. .     ...+.+.   ++.
T Consensus       258 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~----------------~~~~~~~~~-~-----~~~~~~~---~~~  312 (365)
T 3e7e_A          258 SNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE----------------CKPEGLFRR-L-----PHLDMWN---EFF  312 (365)
T ss_dssp             TTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE----------------EEECSCCTT-C-----SSHHHHH---HHH
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc----------------eeechhccc-c-----CcHHHHH---HHH
Confidence            34456789999999999999999999964322210                001111100 0     1122333   444


Q ss_pred             hhcCCCCccCc-hhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRE-STQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~R-p~m~~v~~~l~~i~  486 (495)
                      ..|...+|.+| |++.++.+.++.+-
T Consensus       313 ~~~l~~~p~~r~~~~~~l~~~l~~~l  338 (365)
T 3e7e_A          313 HVMLNIPDCHHLPSLDLLRQKLKKVF  338 (365)
T ss_dssp             HHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCcchHHHHHHHHHHHHH
Confidence            45556677777 67888777776653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.58  E-value=0.027  Score=45.25  Aligned_cols=56  Identities=21%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             EEEcccCcCc-cccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          156 ELSLSSNYFS-GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       156 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      .++.+++.++ ..+|..+.  .+|++|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555443 23443321  34666666666666544455566666666666666543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=95.53  E-value=0.0042  Score=59.62  Aligned_cols=75  Identities=13%  Similarity=0.045  Sum_probs=48.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||+|+++.||++|+.|...     .+.....+.......      .+-.          .....+..+...
T Consensus       213 ~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~~  271 (350)
T 1rdq_E          213 KGYNKAVDWWALGVLIYEMAAGYPPFFA-----DQPIQIYEKIVSGKV------RFPS----------HFSSDLKDLLRN  271 (350)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CCCT----------TCCHHHHHHHHH
T ss_pred             CCCCCcCCEecccHhHhHHhhCCCCCCC-----CCHHHHHHHHHcCCC------CCCC----------CCCHHHHHHHHH
Confidence            3456789999999999999999999542     122233333222211      0000          111236678899


Q ss_pred             cCCCCccCchh-----HHHHH
Q 011044          464 CTVESPIREST-----QRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp~-----m~~v~  479 (495)
                      |...+|.+||+     +.|+.
T Consensus       272 lL~~dp~~R~~~~~~~~~ei~  292 (350)
T 1rdq_E          272 LLQVDLTKRFGNLKNGVNDIK  292 (350)
T ss_dssp             HSCSCTTTCTTSSTTTTHHHH
T ss_pred             HhhcCHHhccCCccCCHHHHH
Confidence            99999999998     77764

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=95.53  E-value=0.0025  Score=63.64  Aligned_cols=26  Identities=19%  Similarity=0.122  Sum_probs=22.6

Q ss_pred             HHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          455 SFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       455 ~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..+..+...|...+|.+||++.|+++
T Consensus       371 ~~~~dLl~~mL~~dP~~R~t~~e~L~  396 (458)
T 3rp9_A          371 ADAIHLLKRMLVFNPNKRITINECLA  396 (458)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhccCccccCCHHHHhc
Confidence            34678899999999999999999864

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=95.51  E-value=0.0038  Score=60.44  Aligned_cols=77  Identities=9%  Similarity=0.091  Sum_probs=48.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|+||+||++.||++|+.|...     .+.....+........  ..+.              ....+..+...|
T Consensus       215 ~~~~~~DiwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~~~--~~~~--------------~~~~~~~li~~l  273 (373)
T 2r5t_A          215 PYDRTVDWWCLGAVLYEMLYGLPPFYS-----RNTAEMYDNILNKPLQ--LKPN--------------ITNSARHLLEGL  273 (373)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTCC-----SBHHHHHHHHHHSCCC--CCSS--------------SCHHHHHHHHHH
T ss_pred             CCCchhhhHHHHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhcccC--CCCC--------------CCHHHHHHHHHH
Confidence            456789999999999999999999542     2222333322221110  0011              112356788899


Q ss_pred             CCCCccCchhHHHHHHHH
Q 011044          465 TVESPIRESTQRKLLQDS  482 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~~l  482 (495)
                      ...+|.+||++.+.+.++
T Consensus       274 L~~dp~~R~~~~~~~~~i  291 (373)
T 2r5t_A          274 LQKDRTKRLGAKDDFMEI  291 (373)
T ss_dssp             TCSSGGGSTTTTTTHHHH
T ss_pred             cccCHHhCCCCCCCHHHH
Confidence            999999999987544433

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=95.23  E-value=0.0076  Score=56.91  Aligned_cols=75  Identities=13%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++|+||+|+++.||++|+.|...    . +.....+.......      .+-.          .....+.++...
T Consensus       178 ~~~~~~~DiwslG~il~ell~g~~pf~~----~-~~~~~~~~i~~~~~------~~p~----------~~~~~~~~li~~  236 (318)
T 1fot_A          178 KPYNKSIDWWSFGILIYEMLAGYTPFYD----S-NTMKTYEKILNAEL------RFPP----------FFNEDVKDLLSR  236 (318)
T ss_dssp             CCBCTTHHHHHHHHHHHHHHHSSCTTCC----S-SHHHHHHHHHHCCC------CCCT----------TSCHHHHHHHHH
T ss_pred             CCCCcccchhhhHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCC------CCCC----------CCCHHHHHHHHH
Confidence            4456789999999999999999999532    1 22233332222111      0000          001236677889


Q ss_pred             cCCCCccCch-----hHHHHH
Q 011044          464 CTVESPIRES-----TQRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp-----~m~~v~  479 (495)
                      |...+|.+||     ++.|+.
T Consensus       237 lL~~dp~~R~~~~~~~~~~i~  257 (318)
T 1fot_A          237 LITRDLSQRLGNLQNGTEDVK  257 (318)
T ss_dssp             HTCSCTTTCTTSSTTTTHHHH
T ss_pred             HhccCHHHcCCCcCCCHHHHh
Confidence            9999999999     777774

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=95.12  E-value=0.0084  Score=57.53  Aligned_cols=72  Identities=10%  Similarity=0.146  Sum_probs=46.0

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+||++.||++|+.|...     .+.....+........      +-.          .....+..+..
T Consensus       195 ~~~~~~~~DiwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~~~------~p~----------~~s~~~~~li~  253 (353)
T 2i0e_A          195 YQPYGKSVDWWAFGVLLYEMLAGQAPFEG-----EDEDELFQSIMEHNVA------YPK----------SMSKEAVAICK  253 (353)
T ss_dssp             TCCBSTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC------CCT----------TSCHHHHHHHH
T ss_pred             CCCcCCcccccchHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhCCCC------CCC----------CCCHHHHHHHH
Confidence            34456789999999999999999999542     2223333332221110      000          01123667888


Q ss_pred             hcCCCCccCchhH
Q 011044          463 ECTVESPIRESTQ  475 (495)
Q Consensus       463 ~C~~~~p~~Rp~m  475 (495)
                      .|...+|.+||+.
T Consensus       254 ~lL~~dP~~R~~~  266 (353)
T 2i0e_A          254 GLMTKHPGKRLGC  266 (353)
T ss_dssp             HHTCSCTTSCTTC
T ss_pred             HHhhcCHHHcCCC
Confidence            9999999999964

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=94.99  E-value=0.0071  Score=58.04  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=44.6

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||+||++.||+||+.|...     .+-....+........   -+.             .....+..+...|.
T Consensus       201 ~~~~~DiwslG~il~ell~G~~Pf~~-----~~~~~~~~~i~~~~~~---~p~-------------~~~~~~~~li~~lL  259 (353)
T 3txo_A          201 YGPAVDWWAMGVLLYEMLCGHAPFEA-----ENEDDLFEAILNDEVV---YPT-------------WLHEDATGILKSFM  259 (353)
T ss_dssp             CTTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCCC---CCT-------------TSCHHHHHHHHHHT
T ss_pred             cCCccCCCcchHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCCC---CCC-------------CCCHHHHHHHHHHh
Confidence            45689999999999999999999542     2222333332221110   000             01122567788999


Q ss_pred             CCCccCchhH
Q 011044          466 VESPIRESTQ  475 (495)
Q Consensus       466 ~~~p~~Rp~m  475 (495)
                      ..+|.+||+.
T Consensus       260 ~~dP~~R~~~  269 (353)
T 3txo_A          260 TKNPTMRLGS  269 (353)
T ss_dssp             CSSGGGSTTS
T ss_pred             hhCHHHccCC
Confidence            9999999998

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=94.92  E-value=0.0036  Score=59.90  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+||++.||++|+.|...     .+.....+......      +.+-..          .-..+..+..
T Consensus       192 ~~~~~~~~DiwslG~il~ell~g~~Pf~~-----~~~~~~~~~i~~~~------~~~p~~----------~s~~~~~li~  250 (345)
T 1xjd_A          192 GQKYNHSVDWWSFGVLLYEMLIGQSPFHG-----QDEEELFHSIRMDN------PFYPRW----------LEKEAKDLLV  250 (345)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCC------CCCCTT----------SCHHHHHHHH
T ss_pred             CCCCCChhhhHHHHHHHHHHhcCCCCCCC-----CCHHHHHHHHHhCC------CCCCcc----------cCHHHHHHHH
Confidence            34467789999999999999999999542     22223222222111      001000          1123567788


Q ss_pred             hcCCCCccCchhHH-HH
Q 011044          463 ECTVESPIRESTQR-KL  478 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~-~v  478 (495)
                      .|...+|.+||++. ++
T Consensus       251 ~lL~~dp~~R~~~~~~i  267 (345)
T 1xjd_A          251 KLFVREPEKRLGVRGDI  267 (345)
T ss_dssp             HHSCSSGGGSBTTBSCG
T ss_pred             HHhcCCHhHcCCChHHH
Confidence            99999999999987 55

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=94.91  E-value=0.0068  Score=59.15  Aligned_cols=78  Identities=8%  Similarity=0.125  Sum_probs=45.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCC---CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE---MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFN  459 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~---~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~  459 (495)
                      ....+.++|+||+||++.||++|+.|.+..-..+   .....++...+......     +-.          ..-..+..
T Consensus       227 ~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~p~----------~~s~~~~~  291 (396)
T 4dc2_A          227 GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIR-----IPR----------SLSVKAAS  291 (396)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCC-----CCT----------TSCHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccC-----CCC----------cCCHHHHH
Confidence            3445678999999999999999999975321110   11112222221111000     000          01123567


Q ss_pred             HHhhcCCCCccCchhH
Q 011044          460 LAMECTVESPIRESTQ  475 (495)
Q Consensus       460 ~~~~C~~~~p~~Rp~m  475 (495)
                      +...|...+|.+||+.
T Consensus       292 li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          292 VLKSFLNKDPKERLGC  307 (396)
T ss_dssp             HHHHHTCSCTTTSTTC
T ss_pred             HHHHHhcCCHhHcCCC
Confidence            8889999999999985

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=94.82  E-value=0.0084  Score=61.00  Aligned_cols=77  Identities=12%  Similarity=0.124  Sum_probs=48.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+||++.||+||+.|....- .......+.+........ . ..              .....+..+..
T Consensus       363 ~~~~~~~~DiwSlGvilyelltG~~PF~~~~-~~~~~~~~~~~i~~~~~~-~-p~--------------~~s~~~~~li~  425 (543)
T 3c4z_A          363 GEEYDFSVDYFALGVTLYEMIAARGPFRARG-EKVENKELKQRVLEQAVT-Y-PD--------------KFSPASKDFCE  425 (543)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT-CCCCHHHHHHHHHHCCCC-C-CT--------------TSCHHHHHHHH
T ss_pred             CCCCChHHhcCcchHHHHHHHhCCCCCCCCc-cchhHHHHHHHHhhcccC-C-Cc--------------ccCHHHHHHHH
Confidence            3456778999999999999999999965321 122333333332221110 0 00              11123567788


Q ss_pred             hcCCCCccCchhHH
Q 011044          463 ECTVESPIRESTQR  476 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~  476 (495)
                      .|...+|.+||++.
T Consensus       426 ~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          426 ALLQKDPEKRLGFR  439 (543)
T ss_dssp             HHSCSSGGGSCCCB
T ss_pred             HhccCCHhHCCCCc
Confidence            99999999999864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=94.71  E-value=0.0061  Score=59.81  Aligned_cols=77  Identities=10%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc-ceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV-MEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~-~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      .+.++|+||+||++.||+||+.|...     .+.....+....... ...  +.   ..     ..   -..+..+...|
T Consensus       250 ~~~~~DiwSlGvilyell~G~~Pf~~-----~~~~~~~~~i~~~~~~~~~--p~---~~-----~~---s~~~~~li~~l  311 (410)
T 3v8s_A          250 YGRECDWWSVGVFLYEMLVGDTPFYA-----DSLVGTYSKIMNHKNSLTF--PD---DN-----DI---SKEAKNLICAF  311 (410)
T ss_dssp             EETHHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHTHHHHCCC--CT---TC-----CC---CHHHHHHHHHH
T ss_pred             CCCcceEecchHHHHHHHhCCCCCCC-----CChhhHHHHHHhccccccC--CC---cc-----cc---cHHHHHHHHHH
Confidence            56789999999999999999999542     122233322222110 000  00   00     00   11244556677


Q ss_pred             CCCCccC--chhHHHHHH
Q 011044          465 TVESPIR--ESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~--Rp~m~~v~~  480 (495)
                      ....|.+  ||++.|+.+
T Consensus       312 L~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          312 LTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             SSCGGGCTTSSCHHHHHT
T ss_pred             ccChhhhCCCCCHHHHhc
Confidence            7778887  999999853

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.69  E-value=0.012  Score=61.84  Aligned_cols=73  Identities=10%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++|||||||++.|+++|..|....+..+..                      ...     ........+..+...|..
T Consensus       254 ~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~----------------------~~~-----~~~~~~~~l~~li~~~l~  306 (681)
T 2pzi_A          254 TVATDIYTVGRTLAALTLDLPTRNGRYVDGLP----------------------EDD-----PVLKTYDSYGRLLRRAID  306 (681)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEETTEECSSCC----------------------TTC-----HHHHHCHHHHHHHHHHTC
T ss_pred             CCceehhhhHHHHHHHHhCCCCCccccccccc----------------------ccc-----cccccCHHHHHHHhhhcc
Confidence            66899999999999999997774432221110                      000     000112346778999999


Q ss_pred             CCccCchh-HHHHHHHHHHHH
Q 011044          467 ESPIREST-QRKLLQDSQKLE  486 (495)
Q Consensus       467 ~~p~~Rp~-m~~v~~~l~~i~  486 (495)
                      .+|.+||+ +.++.+.+..+.
T Consensus       307 ~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          307 PDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             SSGGGSCSSHHHHHHHHHHHH
T ss_pred             CChhhCCCHHHHHHHHHHHHH
Confidence            99999995 555666666543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=94.64  E-value=0.011  Score=62.06  Aligned_cols=76  Identities=11%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.......+.++|+|||||++.||+||+.|...     .+-....+........ + ..              ..-..+.
T Consensus       512 E~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~-----~~~~~~~~~i~~~~~~-~-p~--------------~~s~~~~  570 (674)
T 3pfq_A          512 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG-----EDEDELFQSIMEHNVA-Y-PK--------------SMSKEAV  570 (674)
T ss_dssp             HHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHSSCCC-C-CT--------------TSCHHHH
T ss_pred             hhhcCCCCCccceEechHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhCCCC-C-Cc--------------cCCHHHH
Confidence            333344567789999999999999999999542     2333333333332210 0 00              0112366


Q ss_pred             HHHhhcCCCCccCchhH
Q 011044          459 NLAMECTVESPIRESTQ  475 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m  475 (495)
                      .+...|...+|.+||++
T Consensus       571 ~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          571 AICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             HHHHHHSCSSSTTCTTC
T ss_pred             HHHHHHccCCHHHCCCC
Confidence            78889999999999998

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=94.57  E-value=0.012  Score=60.29  Aligned_cols=80  Identities=11%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+||+||++.||+||+.|....-. ........+....... .+ ..              ..-..+..+..
T Consensus       359 ~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~-~~~~~~i~~~i~~~~~-~~-p~--------------~~s~~~~dLI~  421 (576)
T 2acx_A          359 NERYTFSPDWWALGCLLYEMIAGQSPFQQRKK-KIKREEVERLVKEVPE-EY-SE--------------RFSPQARSLCS  421 (576)
T ss_dssp             TCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS-CCCHHHHHHHHHHCCC-CC-CT--------------TSCHHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHHHhCCCCCccccc-chhHHHHHHHhhcccc-cC-Cc--------------cCCHHHHHHHH
Confidence            44567789999999999999999999654211 1122222221111110 00 00              01123667788


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|...+|.+||     ++.||.
T Consensus       422 ~lL~~dP~~R~g~~~~sa~eil  443 (576)
T 2acx_A          422 QLLCKDPAERLGCRGGSAREVK  443 (576)
T ss_dssp             HHTCSSGGGSTTCSSSHHHHHH
T ss_pred             HhccCCHHHcCCCCCCCHHHHH
Confidence            99999999999     677774

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=94.56  E-value=0.011  Score=56.46  Aligned_cols=77  Identities=8%  Similarity=0.132  Sum_probs=44.9

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCC---CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE---MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~---~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ...+.++|+||+||++.||++|+.|.+......   .....++...+.....     .+-          ......+..+
T Consensus       185 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~p----------~~~s~~~~~l  249 (345)
T 3a8x_A          185 EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-----RIP----------RSLSVKAASV  249 (345)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC-----CCC----------TTSCHHHHHH
T ss_pred             CCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC-----CCC----------CCCCHHHHHH
Confidence            445678999999999999999999975321110   0111122211111100     000          0111236678


Q ss_pred             HhhcCCCCccCchhH
Q 011044          461 AMECTVESPIRESTQ  475 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m  475 (495)
                      ...|...+|.+||+.
T Consensus       250 i~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          250 LKSFLNKDPKERLGC  264 (345)
T ss_dssp             HHHHTCSSTTTSTTC
T ss_pred             HHHHhcCCHhHCCCC
Confidence            889999999999985

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=94.24  E-value=0.014  Score=57.65  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=23.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      +..+.++|||||||++.||+||+.|..
T Consensus       256 ~~~~~~~DvwSlGvil~elltG~~Pf~  282 (437)
T 4aw2_A          256 GRYGPECDWWSLGVCMYEMLYGETPFY  282 (437)
T ss_dssp             CEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCCCCcCeeHHHHHHHHHHHhCCCCCC
Confidence            456778999999999999999999964

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=93.53  E-value=0.022  Score=55.87  Aligned_cols=27  Identities=22%  Similarity=0.452  Sum_probs=23.8

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCc
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      +..+.++|+|||||++.||+||+.|..
T Consensus       245 ~~~~~~~DiwSlGvilyelltG~~Pf~  271 (412)
T 2vd5_A          245 GSYGPECDWWALGVFAYEMFYGQTPFY  271 (412)
T ss_dssp             SEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCCChHHhhhHHhHHHHHHHhCCCCCC
Confidence            456778999999999999999999954

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=92.55  E-value=0.039  Score=57.15  Aligned_cols=72  Identities=13%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++|+||+||++.||+||+.|....-.  .+.....+....... .+ ...+              -.....+...|.
T Consensus       368 y~~~vDiWSLGvilYEmLtG~~PF~~~~~--~~~~~i~~~i~~~~~-~~-p~~~--------------S~~a~dLI~~lL  429 (689)
T 3v5w_A          368 YDSSADWFSLGCMLFKLLRGHSPFRQHKT--KDKHEIDRMTLTMAV-EL-PDSF--------------SPELRSLLEGLL  429 (689)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTCGGGC--CCHHHHHHHHHHCCC-CC-CTTS--------------CHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhhcCCCC-CC-CccC--------------CHHHHHHHHHHc
Confidence            45678999999999999999999643211  222222222221111 00 0000              112557788999


Q ss_pred             CCCccCchhH
Q 011044          466 VESPIRESTQ  475 (495)
Q Consensus       466 ~~~p~~Rp~m  475 (495)
                      ..+|.+|++.
T Consensus       430 ~~dP~~Rl~~  439 (689)
T 3v5w_A          430 QRDVNRRLGC  439 (689)
T ss_dssp             CSCGGGCTTC
T ss_pred             cCCHhHCCCC
Confidence            9999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-31
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-24
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-21
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-21
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-11
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-10
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-10
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-04
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	0.001
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  121 bits (302), Expect = 2e-31
 Identities = 82/308 (26%), Positives = 124/308 (40%), Gaps = 34/308 (11%)

Query: 12  TDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCY--WTGVTCD--VRSHRVAALNISGLNL 67
            D+QALL +K  + +  T     +W  ++  C   W GV CD   +++RV  L++SGLNL
Sbjct: 6   QDKQALLQIKKDLGNPTT---LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 68  TG--TIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN 125
                IPS LANL  L  L +                 + L   +  +T      P+F +
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 126 QMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR-LNLR 184
           Q+  L +L   YN   G +P ++SS   L  ++   N  SG IP   G+ +KL   + + 
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 185 QNKLQGEIPEELGNLAELEMLWLQN----------------------NSLTGTIPSSIFS 222
           +N+L G+IP    NL    +   +N                       +        +  
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 223 LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYV 282
             +L  LDL  N   G +P  +  L  L  L +S N L GE+P   G NL      +   
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYAN 300

Query: 283 NDFSGAIP 290
           N      P
Sbjct: 301 NKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 2/149 (1%)

Query: 209 NNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI--IPSSIGNLSSLQKLYLSDNQLSGELPA 266
           N +  G +  +      + NLDLS  N      IPSS+ NL  L  LY+           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 267 NIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWL 326
                L  L  L +   + SGAIP  +  +  L  L    N L G +P  I +L  L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 327 MLSHNKLVGVVPAPIFNLSTLISLQLHNN 355
               N++ G +P    + S L +    + 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISR 183

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.3 bits (246), Expect = 8e-24
 Identities = 58/283 (20%), Positives = 104/283 (36%), Gaps = 22/283 (7%)

Query: 43  CYWTGVTCDVRSHR---------VAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYG 93
           C+   V C                A L++    +T     +  NL +L  L L  N    
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
             P +   +  L  +Y + N L  ELP      +  L     +       + + L+    
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
           + EL  +    SG        + KL+ + +    +   IP+  G    L  L L  N +T
Sbjct: 129 V-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT 184

Query: 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLP 273
               +S+  L++L  L LS N+ + +   S+ N   L++L+L++N+L          +  
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHK 242

Query: 274 SLQTLSLYVNDFSG------AIPKEIGNLTKLTDLYLDQNKLQ 310
            +Q + L+ N+ S         P         + + L  N +Q
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.4 bits (228), Expect = 2e-21
 Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 13/256 (5%)

Query: 128 SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK 187
            +   L L+ N           + K L  L L +N  S   P     L KL RL L +N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 188 LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNL 247
           L+    +    L EL +   +   +  ++  +  +   ++ L  +    +GI   +   +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 248 SSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQN 307
             L  + ++D  ++  +P  +    PSL  L L  N  +      +  L  L  L L  N
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 308 KLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADV 367
            +       + N   L  L L++NKLV  VP  + +   +  + LHNN++S ++ S+   
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFC 263

Query: 368 P------LPNLEELFL 377
           P        +   + L
Sbjct: 264 PPGYNTKKASYSGVSL 279

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (228), Expect = 1e-21
 Identities = 59/286 (20%), Positives = 93/286 (32%), Gaps = 8/286 (2%)

Query: 50  CDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIY 109
           C   +      +     L   +P  +   ++ Q + L  N       +S     +L  ++
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 110 FNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP 169
            ++N L       F       +             P+T     +L  L L         P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 170 KEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNL 229
                L  L  L L+ N LQ    +   +L  L  L+L  N ++     +   L SL  L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 230 DLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAI 289
            L  N    + P +  +L  L  LYL  N LS  LP      L +LQ L L  N +    
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 290 PKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
                    L       +++   +P     L   +   L+ N L G
Sbjct: 242 R-ARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 4/220 (1%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           +P  + +    + + L  N  S            LT L L  N L          LA LE
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 204 MLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
            L L +N+   ++  + F  L  L  L L       + P     L++LQ LYL DN L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRK 322
            LP +   +L +L  L L+ N  S    +    L  L  L L QN++    PH   +L +
Sbjct: 144 -LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 323 LEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
           L  L L  N L  +    +  L  L  L+L++N       
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 3e-11
 Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 3/186 (1%)

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
              +  Q  LQ  +P  +   A  + ++L  N ++    +S  +  +L  L L  N    
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTK 298
           I  ++   L+ L++L LSDN     +     + L  L TL L         P     L  
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 299 LTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLS 358
           L  LYL  N LQ        +L  L  L L  N++  V       L +L  L LH N ++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 359 GSLPSS 364
              P +
Sbjct: 191 HVHPHA 196

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 2e-20
 Identities = 73/327 (22%), Positives = 128/327 (39%), Gaps = 45/327 (13%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           +N S   LT   P  L NL+ L  + ++ N      P +     + L+++ N  T    L
Sbjct: 71  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 120 PPNFCNQM-----SNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPK---- 170
                        + +  +     +   +  S  +    L+ L+  +      I      
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 171 ---EIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLL 227
               +  LT L  L    N++    P  +     L+ L L  N L      ++ SL++L 
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 228 NLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELP-------------------ANI 268
           +LDL+ N  + + P  +  L+ L +L L  NQ+S   P                    + 
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 269 GNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLML 328
            +NL +L  L+LY N+ S   P  + +LTKL  L+   NK+       + NL  + WL  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 329 SHNKLVGVVPAPIFNLSTLISLQLHNN 355
            HN++  +   P+ NL+ +  L L++ 
Sbjct: 359 GHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 46/254 (18%)

Query: 145 PSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEM 204
             + +   Q+  L              +  L  LT++N   N+L    P  L NL +L  
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 205 LWLQNNSLTGTIP------------------------------------SSIFSLSSLLN 228
           + + NN +    P                                    ++I  +S+L  
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           L        G   + +  L++L  L   D   +     ++   L +L++L    N  S  
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 289 IPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLI 348
            P  I   T L +L L+ N+L+      + +L  L  L L++N++  +  AP+  L+ L 
Sbjct: 213 TPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--APLSGLTKLT 266

Query: 349 SLQLHNNSLSGSLP 362
            L+L  N +S   P
Sbjct: 267 ELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 198 NLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD 257
            LAE     L   ++T T+  +   L  +  L         I    +  L++L ++  S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 258 NQLSGELPANIGNNLPSLQTL 278
           NQL+   P     NL  L  +
Sbjct: 76  NQLTDITPL---KNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 246 NLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD 305
            L+   K  L    ++  +     + + +LQ   L +    G     +  L  LT +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 306 QNKLQGKIPHEIGNLRKLEWLMLSHN 331
            N+L    P  + NL KL  +++++N
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 53/313 (16%), Positives = 100/313 (31%), Gaps = 45/313 (14%)

Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211
            +  +  L     + T+ +   +L ++T L   +  ++    + +  L  L  +   NN 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 77

Query: 212 LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSL--------QKLYLSDNQLSGE 263
           LT   P  + +L+ L+++ ++ N    I P +     +           +    N  +  
Sbjct: 78  LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL--------------------- 302
                 N +  +  LS   +    +   ++ +L  L +L                     
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 303 -----YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
                 L     Q      +G L  L+ L L+ N+L       + +L+ L  L L NN +
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 358 SGSLPSSADVPLPNLEELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEM 417
           S   P S    L  L EL L            G      + + E                
Sbjct: 254 SNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 418 TLRRWVNDLLSIS 430
            L  + N++  IS
Sbjct: 311 YLTLYFNNISDIS 323

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 271 NLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSH 330
            L       L   + +  + +   +L ++T L  D+  +  K    +  L  L  +  S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 331 NKLVGVVPAPIFNLSTLISLQLHNN 355
           N+L  +   P+ NL+ L+ + ++NN
Sbjct: 76  NQLTDIT--PLKNLTKLVDILMNNN 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 6e-12
 Identities = 47/201 (23%), Positives = 73/201 (36%), Gaps = 8/201 (3%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           +N    NLT  +P +L        L LS N  Y    +++   + L  +  +   L    
Sbjct: 15  VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--- 68

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
                  +  L +L L +N           +   L  L +S N  +      +  L +L 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI 239
            L L+ N+L+   P  L    +LE L L NN+LT      +  L +L  L L  N+    
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 240 IPSSIGNLSSLQKLYLSDNQL 260
           IP        L   +L  N  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 48/209 (22%), Positives = 67/209 (32%), Gaps = 28/209 (13%)

Query: 171 EIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLD 230
           E+  +     +N  +  L   +P +L    +  +L L  N L     +++   + L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 231 LSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS----------------------GELPANI 268
           L             G L  L  L LS NQL                         LP   
Sbjct: 62  LD--RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 269 GNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLML 328
              L  LQ L L  N+     P  +    KL  L L  N L       +  L  L+ L+L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 329 SHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
             N L   +P   F    L    LH N  
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 9/213 (4%)

Query: 98  SIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLREL 157
            +  ++S L +  +   L   LPP+      +   L L  N+ +    +TL    +L +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 158 SLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIP 217
           +L       T  +  G L  L  L+L  N+LQ          A   +  +  N LT    
Sbjct: 61  NLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPL 117

Query: 218 SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT 277
            ++  L  L  L L  N    + P  +     L+KL L++N L+      +   L +L T
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG-LENLDT 176

Query: 278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQ 310
           L L  N     IPK       L   +L  N   
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 10/211 (4%)

Query: 124 CNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNL 183
            +++++   +          +P  L   K    L LS N         +   T+LT+LNL
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 184 -RQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPS 242
            R    + ++   L  L  L++   Q  SL     +          LD+S N  T +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVSFNRLTSLPLG 118

Query: 243 SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
           ++  L  LQ+LYL  N+L   LP  +    P L+ LSL  N+ +      +  L  L  L
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
            L +N L   IP        L +  L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 155 RELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214
           R L L+      T+   +  L  +T L+L  N+L+   P  L  L  LE+L   +N    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN--AL 55

Query: 215 TIPSSIFSLSSLLNLDLSLNNFTGI-IPSSIGNLSSLQKLYLSDNQLSGE--LPANIGNN 271
                + +L  L  L L  N          + +   L  L L  N L  E  +   +   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 272 LPSLQTL 278
           LPS+ ++
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 229 LDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGA 288
           L L+  + T +    +  L  +  L LS N+L    PA     L  L+ L    N     
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALE-- 56

Query: 289 IPKEIGNLTKLTDLYLDQNKLQG-KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTL 347
               + NL +L +L L  N+LQ       + +  +L  L L  N L             L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 348 ISLQ 351
            S+ 
Sbjct: 117 PSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 181 LNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGII 240
           L+L    L   +   L  L  +  L L +N L    P+ + +L  L  L  S N    + 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV- 58

Query: 241 PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
              + NL  LQ+L L +N+L          + P L  L+L  N            L ++
Sbjct: 59  -DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L+++  +LT  +   L  L  +  LDLS N      P+    +++L  +     +     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 120 PPNFCNQMSNLESLFLKYNMF-HGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
             +    +  L+ L L  N          L SC +L  L+L  N            L ++
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 276 QTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVG 335
           + L L   D +  +   +  L  +T L L  N+L+   P  +  LR LE L  S N L  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 336 VVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           V             L L NN L  S      V  P L  L L
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNL 97

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.5 bits (137), Expect = 3e-10
 Identities = 40/203 (19%), Positives = 59/203 (29%), Gaps = 19/203 (9%)

Query: 43  CYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNM 102
           C  T V C            +G  L   IP ++        L L+ N         +F  
Sbjct: 8   CEGTTVDC------------TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR 52

Query: 103 SSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSN 162
              L            + PN     S+++ L L  N              QL+ L+L  N
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 163 YFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFS 222
             S  +P    +L  LT LN   +               L    L   +     PS    
Sbjct: 113 QISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS---K 168

Query: 223 LSSLLNLDLSLNNFTGIIPSSIG 245
           +  +   DL  + F     +S G
Sbjct: 169 VRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.0 bits (133), Expect = 9e-10
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 6/167 (3%)

Query: 94  SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQ 153
            IP  I        +  N+N L          ++ +L  L LK N   G  P+       
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 154 LRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT 213
           ++EL L  N       K    L +L  LNL  N++   +P    +L  L  L L +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
                + F    L    L+        PS    +  +Q   L  ++ 
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 6/159 (3%)

Query: 128 SNLESLFLKYNMFHGKIPSTL-SSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQN 186
            +   L L  N         L      L +L L  N  +G  P      + +  L L +N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 187 KLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGN 246
           K++    +    L +L+ L L +N ++  +    F   + L      +N           
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 247 LSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF 285
              L+K  L+        P+     +  +Q   L  ++F
Sbjct: 148 AEWLRKKSLNGGAARCGAPS----KVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEI-GNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
           IP  +       EL L+ N         + G L  L +L L++N+L G  P      + +
Sbjct: 23  IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 203 EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
           + L L  N +          L  L  L+L  N  + ++P S  +L+SL  L L+ N  + 
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQ 306
                        +  SL         P ++ ++ ++ DL   +
Sbjct: 141 NCHLAWFAEWL--RKKSLNGGAARCGAPSKVRDV-QIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 225 SLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVND 284
               +D +      I P  I       +L L+DN+L       +   LP L  L L  N 
Sbjct: 9   EGTTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 285 FSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNL 344
            +G  P      + + +L L +NK++         L +L+ L L  N++  V+P    +L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 345 STLISLQLHNNSLSGSLP 362
           ++L SL L +N  + +  
Sbjct: 126 NSLTSLNLASNPFNCNCH 143

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 50/275 (18%), Positives = 103/275 (37%), Gaps = 16/275 (5%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L+++G NL   +   L +   + A     ++    +    F+   +  +  +N+ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST 62

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSS--NYFSGTIPKEIGNLTK 177
                +Q S L++L L+       I +TL+    L  L+LS    +    +   + + ++
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 178 LTRLNLRQNKLQG------EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL 231
           L  LNL              +      + +L +   + N     + + +    +L++LDL
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 232 SLN-NFTGIIPSSIGNLSSLQKLYLSD-NQLSGELPANIGNNLPSLQTLSLYVNDFSGAI 289
           S +             L+ LQ L LS    +  E    +G  +P+L+TL ++     G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIVPDGTL 241

Query: 290 PKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLE 324
                 L  L    ++ +         IGN +  E
Sbjct: 242 QLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-08
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 205 LW----LQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
           LW    L   +L   +   + S   ++      +     +         +Q + LS++ +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 261 SGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
                  I +    LQ LSL     S  I   +   + L  L
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 12/208 (5%)

Query: 53  RSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNN 112
           +  ++  L++ GL L+  I + LA  S+L  L+LS    +          S       N 
Sbjct: 69  QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128

Query: 113 NTLFGELPPNFCNQMSNLESLF-------LKYNMFHGKIPSTLSSCKQLRELSLSSNY-F 164
           +  F     +    ++++            + N+    + + +  C  L  L LS +   
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188

Query: 165 SGTIPKEIGNLTKLTRLNLRQ-NKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSL 223
                +E   L  L  L+L +   +  E   ELG +  L+ L +      GT+       
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK--- 245

Query: 224 SSLLNLDLSLNNFTGIIPSSIGNLSSLQ 251
            +L +L ++ ++FT I   +IGN  + +
Sbjct: 246 EALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 45/261 (17%), Positives = 78/261 (29%), Gaps = 17/261 (6%)

Query: 46  TGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIF-NMSS 104
             VT  + S  V A       +   +    +    +Q +DLS +    S    I    S 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 105 LLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYF 164
           L ++      L   +      + SNL  L L       +           R   L+ ++ 
Sbjct: 73  LQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 165 SGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAE---------LEMLWLQNNSLTGT 215
                K +          + Q  L G       +            + +    +  L   
Sbjct: 132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 191

Query: 216 IPSSIFSLSSLLNLDLS-LNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPS 274
                F L+ L +L LS   +        +G + +L+ L +      G L   +   LP 
Sbjct: 192 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL-LKEALPH 250

Query: 275 LQTLSLYVNDFSGAIPKEIGN 295
           LQ   +  + F+      IGN
Sbjct: 251 LQ---INCSHFTTIARPTIGN 268

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 9/139 (6%)

Query: 88  FNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPST 147
            +        ++ +           +  F ++  N  + +S L       N    +I S 
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279

Query: 148 LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWL 207
                 L EL++S+N     +P        L RL    N L  E+PE   N   L+ L +
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHV 331

Query: 208 QNNSLTGTIPSSIFSLSSL 226
           + N L    P    S+  L
Sbjct: 332 EYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 204 MLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGE 263
                 N+ +  I S      SL  L++S N     +P+       L++L  S N L+  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-- 317

Query: 264 LPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKL 299
               +     +L+ L +  N      P    ++  L
Sbjct: 318 ---EVPELPQNLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 182 NLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIP 241
               N    EI         LE L + NN L   +P+    L     L  S N+   +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPE 321

Query: 242 SSIGNLSSLQKLYLSDNQLSG--ELPANIGN 270
                  +L++L++  N L    ++P ++ +
Sbjct: 322 L----PQNLKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 270 NNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLS 329
           +  PSL+ L++  N     +P     L +L       N L  ++P    NL++L    + 
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLKQLH---VE 332

Query: 330 HNKLVGVVPAPIFNLSTLISLQLHN 354
           +N L      P     ++  L++++
Sbjct: 333 YNPLREFPDIP----ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 55/327 (16%), Positives = 96/327 (29%), Gaps = 27/327 (8%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L ++ L L+ ++P    +L   ++L  S N     +P    ++ SLL    N   L    
Sbjct: 43  LELNNLGLS-SLPELPPHL---ESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLT 179
           P      +SN +   L        +         L++L                      
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 180 RLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGT---------IPSSIFSLSSLLNLD 230
             NL            L  L +L +      +             +P      +    L 
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 231 LSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP 290
              +    +   ++ +        L  +    ++  NI + L  L     Y+N  S  I 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 291 KEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISL 350
                   L +L +  NKL  ++P     L +L     S N L  V          L  L
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAEVPE----LPQNLKQL 329

Query: 351 QLHNNSLSGSLPSSADVPLPNLEELFL 377
            +  N L    P        ++E+L +
Sbjct: 330 HVEYNPLR-EFPDI----PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
            +Q  EL L++   S ++P+   +L  L       N L  E+PE   +L  L +      
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 211 SLTGTIPS 218
           +L+   P 
Sbjct: 92  ALSDLPPL 99

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 21/212 (9%)

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
            +     N+T T+    A+L  +  L         +    +  +++L+ +   +N +   
Sbjct: 23  KIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDL 78

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSS-------------NYFS 165
            P     +++ LE                      L    ++                  
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 166 GTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSS 225
             I              L     Q      L NL++L  L   +N ++   P  + SL +
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPN 196

Query: 226 LLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD 257
           L+ + L  N  + + P  + N S+L  + L++
Sbjct: 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 22/217 (10%)

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233
            L    ++   ++ +   + +   +L  +  L      +T      +  L++L+ L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ-------------TLSL 280
           N  T + P       +  +L  +  +    +          L              +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 281 YVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP 340
            +      I             YL     Q      + NL KL  L    NK+  +  +P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SP 190

Query: 341 IFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFL 377
           + +L  LI + L NN +S   P +      NL  + L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLAN---TSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211
               +++   +  + T+ +   +L  +T L+     +     E +  L  L  L L++N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 212 LTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNN 271
           +T   P    +  + L L  +       I       +         +       +N+   
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 272 LPSLQTL-------------SLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIG 318
              L  +              L + +   +    + NL+KLT L  D NK+    P  + 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 319 NLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN 354
           +L  L  + L +N++  V   P+ N S L  + L N
Sbjct: 193 SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 202 LEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGIIPSSIG-----NLSSLQK 252
           L +LWL +  ++ +    + +++ +  SL  LDLS N         +          L++
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 253 LYLSDNQLSGELPANIGN---NLPSLQTLS 279
           L L D   S E+   +     + PSL+ +S
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 4e-07
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 121 PNFCNQMSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGTIPKEIG--- 173
                  S L  L+L            + +TL +   LREL LS+N        ++    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 174 --NLTKLTRLNLRQNKLQGEIPEELGNLAE 201
                 L +L L       E+ + L  L +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 4e-07
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 249 SLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYL 304
            +Q L +   +LS    A +   L   Q + L     +      I   +     L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 305 DQNKLQGKIPHEIG-----NLRKLEWLMLSHN 331
             N+L     H +         K++ L L + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 201 ELEMLWLQNNSLTGTIPSSIFS-LSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYL 255
           +++ L +Q   L+    + +   L     + L     T      I S++    +L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 256 SDNQLSGE----LPANIGNNLPSLQTLSLY 281
             N+L       +   +      +Q LSL 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 178 LTRLNLRQNKLQGE-IPEELGNLAELEMLWLQNNSLTG----TIPSSIFSLSSLLNLDLS 232
           +  L+++  +L      E L  L + +++ L +  LT      I S++    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 233 LNNFTGIIPSSIG-----NLSSLQKLYLSDNQ 259
            N    +    +          +QKL L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 225 SLLNLDLSLNNFTGI-IPSSIGNLSSLQKLYLSDNQLSGELPANIGN---NLPSLQTLSL 280
            + +LD+     +       +  L   Q + L D  L+     +I +     P+L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 281 YVNDFSGAIPKEIG-----NLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNK 332
             N+        +         K+  L L    L G     + +  +    +   + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 224 SSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLSGE----LPANIGNNLPSL 275
           S L  L L+  + +      + +++    SL++L LS+N L       L  ++      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 276 QTLSLYVNDFSGAIPKEIGNLTK 298
           + L LY   +S  +   +  L K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 129 NLESLFLKYNMF-HGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG----NLTKLTRLNL 183
           +++SL ++       +    L   +Q + + L     +    K+I         L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 184 RQNKLQGEIPEELGNLAELEMLWLQNNSLTG 214
           R N+L       +    +     +Q  SL  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 9/88 (10%)

Query: 145 PSTLSSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGEIPEELG--- 197
                    LR L L+    S +    +   +     L  L+L  N L      +L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 198 --NLAELEMLWLQNNSLTGTIPSSIFSL 223
                 LE L L +   +  +   + +L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 246 NLSSLQKLYLSDNQLSGELPANIGN---NLPSLQTLSLYVNDFSGAIPKEIG-----NLT 297
             S L+ L+L+D  +S    +++        SL+ L L  N    A   ++         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 298 KLTDLYLDQNKLQGKIPHEIGNLRK 322
            L  L L       ++   +  L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 8e-05
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 104 SLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSL 159
            + S+      L           +   + + L            I S L     L EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG 190
            SN         +    +     +++  LQ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 299 LTDLYLDQNKLQGK-IPHEIGNLRKLEWLMLSHNKL----VGVVPAPIFNLSTLISLQLH 353
           +  L +   +L        +  L++ + + L    L       + + +     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 354 NNSLSG----SLPSSADVPLPNLEELFLWEYG 381
           +N L       +      P   +++L L    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 37/246 (15%), Positives = 67/246 (27%), Gaps = 23/246 (9%)

Query: 43  CYWTGVTCDVRS---------HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYG 93
           C      C                  L      L        +    L+ +++S N    
Sbjct: 8   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 94  SIPSSIFNMSSLL---SIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSS 150
            I + +F+    L    I   NN L+                +          +    S 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 151 CKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN 210
            K L ++  + N  +      +G   +   L L +N +Q             E+    NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 211 SLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGN 270
           +L           S  + LD+S      +    + NL  L+     + +           
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----------- 236

Query: 271 NLPSLQ 276
            LP+L+
Sbjct: 237 KLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 30/223 (13%), Positives = 55/223 (24%), Gaps = 8/223 (3%)

Query: 144 IPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELE 203
           IPS L   +   EL                    L ++ + QN +   I  ++ +     
Sbjct: 23  IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 204 MLWLQ---NNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
                   NN L     +     +    L  +           I +L  +      +  +
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 261 SGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNL 320
                 +          L L  N                     D N L+          
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 321 RKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
                L +S  ++  +    + NL  L +   +N      LP+
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 3/144 (2%)

Query: 222 SLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
                  L  + +         +    +L +LY+ + Q    L       L  L+ L++ 
Sbjct: 6   CPHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 282 VNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLV-GVVPAP 340
            +      P       +L+ L L  N L+  +  +      L+ L+LS N L        
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRW 123

Query: 341 IFNLSTLISLQLHNNSLSGSLPSS 364
           +          +    L       
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGP 147

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 3/146 (2%)

Query: 79  SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN 138
                L  + +         +    +L  +Y  N      L       +  L +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 139 MFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ-GEIPEELG 197
                 P       +L  L+LS N    ++  +      L  L L  N L        L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 198 NLAELEMLWLQNNSLTGTIPSSIFSL 223
              E  +  +    L       +  +
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHM 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 11/144 (7%)

Query: 143 KIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL 202
           ++   +S      + +L           ++        LN R + +   +     N+ EL
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 203 EMLWLQNNSLTGT--IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQL 260
             L L NN L     + S +    +L  L+LS N               L++L+L  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 261 SGELPAN------IGNNLPSLQTL 278
           S            I    P L  L
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 6/137 (4%)

Query: 216 IPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSL 275
           +   +          L L          +   +    L    +         I  N+P L
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMA--ATLRIIEENIPEL 67

Query: 276 QTLSLYVNDFSG--AIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL 333
            +L+L  N       +   +     L  L L  N+L+ +   +     KLE L L  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 334 VGVVPAPIFNLSTLISL 350
                     +S +   
Sbjct: 128 SDTFRDQSTYISAIRER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 5/145 (3%)

Query: 121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTR 180
               ++  +     L            L +      L+  S+  + T+     N+ +L  
Sbjct: 13  KLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLS 69

Query: 181 LNLRQNKLQG--EIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
           LNL  N+L    ++   +     L++L L  N L             L  L L  N+ + 
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 239 IIPSSIGNLSSLQKLYLSDNQLSGE 263
                   +S++++ +    +L G 
Sbjct: 130 TFRDQSTYISAIRERFPKLLRLDGH 154

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 146 STLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEML 205
           +  ++  + REL L        I      L +   ++   N+++    +    L  L+ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 206 WLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI-IPSSIGNLSSLQKLYLSDNQLSG-- 262
            + NN +         +L  L  L L+ N+   +     + +L SL  L +  N ++   
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 263 ELPANIGNNLPSLQTL 278
                +   +P ++ L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 218 SSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQT 277
           +   +      LDL       +I +    L     +  SDN++      +    L  L+T
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKT 67

Query: 278 LSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG-KIPHEIGNLRKLEWLMLSHNKLVGV 336
           L +  N            L  LT+L L  N L        + +L+ L +L +  N +   
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 337 VPAPIFNLSTLISLQLHNNS 356
               ++ +  +  +++ +  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233
           N  +   L+LR  K+   I      L + + +   +N +          L  L  L ++ 
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNN 72

Query: 234 NNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY---VNDFSGAIP 290
           N    I       L  L +L L++N L      +   +L SL  L +    V +      
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 291 KEIGNLTKLTDLYLDQNK 308
             I  + ++    LD  K
Sbjct: 133 YVIYKVPQVR--VLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 198 NLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD 257
           N      L L+   +   I +   +L     +D S N    +       L  L+ L +++
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 72

Query: 258 NQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLD---QNKLQGKIP 314
           N++               + +    +         + +L  LT L +        +    
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 315 HEIGNLRKLEWL 326
           + I  + ++  L
Sbjct: 133 YVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGEL 119
           L++ G  +   I +  A L    A+D S N            +  L ++  NNN +    
Sbjct: 23  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIG 79

Query: 120 PPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSS---NYFSGTIPKEIGNLT 176
                      E +    ++        L+S K L  L +               I  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 177 KLTRLNLRQNKLQ 189
           ++  L+ ++ KL+
Sbjct: 140 QVRVLDFQKVKLK 152

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 22/195 (11%)

Query: 198 NLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD 257
             AE     L+  S+T  +  +   L+S+  +  + ++   +    I  L ++ KL+L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 258 NQLSGEL--------------PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLY 303
           N+L+                    + +         L           +I  L  L  L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 304 LDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPS 363
                        + +       +   +  +  +  P+  L+ L +L L  N +S  L +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHIS-DLRA 195

Query: 364 SADVPLPNLEELFLW 378
            A   L NL+ L L+
Sbjct: 196 LAG--LKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNS 211
            +  + +L     +  + +    L  + ++    + ++      +  L  +  L+L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 212 LTGTIPSSIFSLSSLLNLDLSLN---------------NFTGIIPSSIGNLSSLQKLYLS 256
           LT   P +       L LD +                 +      S I  L  L +L   
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 257 DNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHE 316
               +      + + L  L TLSL  N  S  +P  +  LTKL +LYL +N +       
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRA 195

Query: 317 IGNLRKLEWLMLS 329
           +  L+ L+ L L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 34/198 (17%), Positives = 73/198 (36%), Gaps = 17/198 (8%)

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
             N+   ++T  +      L+S+  +  + +         I  + ++  ++ N N L   
Sbjct: 28  KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD- 82

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
                   +  L +L     +F  +      S  +  +   S +     I    G +   
Sbjct: 83  --------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
              +L     +      L  L +L+ L L++N ++  +P  +  L+ L NL LS N+ + 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

Query: 239 IIPSSIGNLSSLQKLYLS 256
           +   ++  L +L  L L 
Sbjct: 193 L--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 29/209 (13%)

Query: 167 TIPKEIG------NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSI 220
           T+P  I          +  + NL++  +   + +    L  ++ +   N+ +       I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64

Query: 221 FSLSSLLNLDLSLNNFTGIIPSS---------------IGNLSSLQKLYLSDNQLSGELP 265
             L ++  L L+ N  T I P +                   S      L    L     
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 266 ANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEW 325
           ++I   +   Q  SLY+ +        +  LTKL  L L+ N++   +P  +  L KL+ 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182

Query: 326 LMLSHNKLVGVVPAPIFNLSTLISLQLHN 354
           L LS N +  +    +  L  L  L+L +
Sbjct: 183 LYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 207 LQNNSLTGTIP-SSIFS---LSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSG 262
           L + ++T   P   IFS    +  +  +L   + T  +  +   L+S+ ++  +++ +  
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 60

Query: 263 ELPANIGNNLPSLQTLSLYVNDFSG 287
                    LP++  L L  N  + 
Sbjct: 61  VQGI---QYLPNVTKLFLNGNKLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 18/205 (8%)

Query: 77  NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK 136
             +     +L       ++  +   ++S+  I  NN+ +       +   + N+  LFL 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQY---LPNVTKLFLN 76

Query: 137 YNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEEL 196
            N         L+  K L  L      F      +  +  K  +     +     I +  
Sbjct: 77  GNK--------LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 197 GNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLS 256
           G +   ++  L   +   T  + +  L+ L  L L  N  + I+P  +  L+ LQ LYLS
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186

Query: 257 DNQLSGELPANIGNNLPSLQTLSLY 281
            N +S +L A     L +L  L L+
Sbjct: 187 KNHIS-DLRAL--AGLKNLDVLELF 208

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 17/195 (8%)

Query: 59  ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGE 118
              +   N+T T+     +L  +  L                 + S+  + + NN     
Sbjct: 22  KTVLGKTNVTDTVS--QTDLDQVTTLQADRL-----------GIKSIDGVEYLNNLTQIN 68

Query: 119 LPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL 178
              N    ++ L++L    ++          +             F+  I          
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 179 TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG 238
               L  +         L  L  L+ L   +N +T   P  + +L++L  LD+S N  + 
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD 186

Query: 239 IIPSSIGNLSSLQKL 253
           I  S +  L++L+ L
Sbjct: 187 I--SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 24/193 (12%)

Query: 198 NLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD 257
            LAE     L   ++T T+  +   L  +  L         I    +  L++L ++  S+
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71

Query: 258 NQLSGEL---------------PANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDL 302
           NQL+                           +  T    +  F+  I             
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 303 YLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLP 362
            L+ +         +  L  L+ L  S N++  +   P+ NL+TL  L + +N +S  + 
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS-DIS 188

Query: 363 SSADVPLPNLEEL 375
             A   L NLE L
Sbjct: 189 VLA--KLTNLESL 199

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 373 EELFLWEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVM 432
           E L      +        DIY  G++  E            + ++     V    S+  M
Sbjct: 182 EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM 241

Query: 433 -EVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKL-ETRCL 490
            +VV    L     +     + +  +  +  EC   +     T  ++ +   +L +   +
Sbjct: 242 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGI 301

Query: 491 KM 492
           KM
Sbjct: 302 KM 303

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDAN 438
               +   S   D+Y FGI++ E  T + P   I N +  +       LS  + +V    
Sbjct: 179 RMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKV---- 234

Query: 439 LLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKL 485
                      +  C   +  L  EC  +         ++L   + L
Sbjct: 235 -----------RSNCPKAMKRLMAECLKKKRDERPLFPQILASIELL 270

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 204 MLWLQNNSLTGTIPSSIF------SLSSLLNLDLSLNNFTGIIPSSI-----GNLSSLQK 252
            L L +  L+    +++           L  L L  N        ++       +  L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 253 LYLSDNQLSGE 263
           L L+ N+ S E
Sbjct: 307 LELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 221 FSLSSL-LNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLS 279
           FS+    L LD         + + +    S++++ LS N +  E    +  N+ S + L 
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 39/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%)

Query: 60  LNISGLNLTG----TIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTL 115
           + +SG  +       +   +A+   L+  + S  +           +  LL        L
Sbjct: 36  IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95

Query: 116 --FGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG 173
                    F          FL  +     +    +         ++       + K+  
Sbjct: 96  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 155

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLD--- 230
           N   L  +   +N+L+    +E     +   L      +   I         L  L    
Sbjct: 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 215

Query: 231 ----------LSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNL-----PSL 275
                        +  +  +  ++ +  +L++L L+D  LS    A + +         L
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 275

Query: 276 QTLSLYVNDFSGAIPKEI-----GNLTKLTDLYLDQNKLQGKIPHEIGNLRKL 323
           QTL L  N+      + +       +  L  L L+ N+   +    +  +R++
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 274 SLQTLSLYVNDFSG----AIPKEIGNLTKLTDLYLDQNKLQGK----IPHEIGNLRKLEW 325
           S++  SL ++  +     ++   +     + ++ L  N +  +    +   I + + LE 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 326 LMLSHNKLVGVVPAPIFNLSTLISLQLHNNSL 357
              S      V       L  L+   L    L
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 37/325 (11%), Positives = 83/325 (25%), Gaps = 30/325 (9%)

Query: 60  LNISGLNLTGTIPSELANLSSLQALDLSFNWF----YGSIPSSIFNMSSL--LSIYFNNN 113
           L+        ++ + L    S++ + LS N         +  +I +   L          
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 114 TLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIG 173
               +  P     +        K +       +   + ++     LS +     +     
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSL 233
            L       + +   +  + ++  N   L  +    N L                L  ++
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 234 NNFTGIIPS------------SIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY 281
                 I                  L  L     +   L     A    + P+L+ L L 
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 282 VNDFSGAIPKEIGN------LTKLTDLYLDQNKLQGKIPHEI-----GNLRKLEWLMLSH 330
               S      + +         L  L L  N+++      +       +  L +L L+ 
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 331 NKLVGVVPAPIFNLSTLISLQLHNN 355
           N+        +  +  + S +    
Sbjct: 312 NRF-SEEDDVVDEIREVFSTRGRGE 335

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 13/108 (12%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 378 WEYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDA 437
            E  +  + +T  D+++FG+++ E  T   P       ++        L           
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAP----PYPDVNTFDITVYL----------- 247

Query: 438 NLLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKL 485
                + +  +  E C   ++ + ++C         +  +L+     +
Sbjct: 248 ----LQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 19/107 (17%)

Query: 379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDAN 438
           E     R S+  D+++FG+++ E F+  K   E  +    +                   
Sbjct: 172 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF------------ 219

Query: 439 LLSWKDKHFMTKEQCMSFVFNLAMECTVESPIRESTQRKLLQDSQKL 485
                           + V+ +   C  E P       +LL+   ++
Sbjct: 220 -------RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.63
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.61
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.54
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.53
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	98.53
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.51
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.45
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.41
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	98.39
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	98.38
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.33
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	98.3
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.28
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	98.25
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.25
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	98.2
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	98.19
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.16
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	98.14
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.12
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	97.92
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	97.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	97.72
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	97.7
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	97.63
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	97.58
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	97.58
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	97.51
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	97.41
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	97.39
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	97.38
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	97.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	97.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.21
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.19
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	97.18
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	97.07
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	97.07
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	97.07
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	96.91
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	96.91
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	96.87
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	96.81
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	96.81
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	96.74
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	96.71
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	96.63
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	96.59
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	96.58
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	96.5
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	96.44
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	96.41
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	96.19
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	96.15
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	96.03
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	95.97
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	95.73
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	95.32
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	94.08

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.6e-40  Score=315.55  Aligned_cols=293  Identities=32%  Similarity=0.537  Sum_probs=207.4

Q ss_pred             CCChHHHHHHHHHHhhCCCCCCccccCCCCCCCCCCc--cceeeeCCC--CCCeEEEEcCCCCCcc--cCchhccCCCCC
Q 011044            8 TSITTDQQALLVLKAHVTDDPTNFLAKNWNTSSSFCY--WTGVTCDVR--SHRVAALNISGLNLTG--TIPSELANLSSL   81 (495)
Q Consensus         8 ~~~~~~~~~ll~~~~~~~~~~~~~l~~~w~~~~~~c~--w~gv~c~~~--~~~l~~L~L~~~~l~~--~~~~~l~~l~~L   81 (495)
                      -|.++|++||++||+++ .+|. .++ +|..+.++|.  |.||+|+..  ..+|++|+|++++++|  .+|+.++++++|
T Consensus         2 ~c~~~e~~aLl~~k~~~-~~~~-~l~-sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDL-GNPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHT-TCCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHHC-CCCC-cCC-CCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            58999999999999999 4664 566 9988889994  999999864  3489999999999988  478899999999


Q ss_pred             CEEeCcC-CcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcc
Q 011044           82 QALDLSF-NWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLS  160 (495)
Q Consensus        82 ~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  160 (495)
                      ++|+|++ |.++|.+|..++++++|++|++++|.+.+..+..+.. +.+|+.+++++|.+.+.+|..+.++++|++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccc-hhhhcccccccccccccCchhhccCcccceeecc
Confidence            9999986 7888888988888888888888888887766665555 7888888888888777777778888888888888


Q ss_pred             cCcCccccCccccCCCCC-CEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCC
Q 011044          161 SNYFSGTIPKEIGNLTKL-TRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGI  239 (495)
Q Consensus       161 ~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  239 (495)
                      +|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .+++..+...+.+|..+..+++++.+++++|.+.+.
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            887777777777776665 667777777776666666555433 566666666666666666666666666666665544


Q ss_pred             CCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeeccccc
Q 011044          240 IPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNK  308 (495)
Q Consensus       240 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  308 (495)
                      ++ .++.+++|+.|++++|+++|.+|..+. .+++|++|+|++|+++|.+|. ++.+.+|+.+++++|+
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cc-ccccccccccccCccCeecccCChHHh-CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            33 344455555555555555555554444 445555555555555444442 2344444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.2e-29  Score=240.13  Aligned_cols=249  Identities=32%  Similarity=0.493  Sum_probs=164.4

Q ss_pred             CCCCEEeCcCCcCCc--cCCccccCCCCCcEEEccC-CcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044           79 SSLQALDLSFNWFYG--SIPSSIFNMSSLLSIYFNN-NTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR  155 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (495)
                      .+++.|+|+++.+.+  .+|..+.++++|++|++++ |.++|.+|..+.. +++|++|++++|++.+..+..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhc
Confidence            467888888888876  4677888888888888876 6777777777766 77888888888877776777777777777


Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccc-cEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAEL-EMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      ++++++|.+.+.+|..+..+++++++++++|.+.+.+|..+..+..+ +.+++++|.+++..+..+..+..+ .++++.+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            77777777777777777777777777777777777777777666664 667777777766666666555433 4666666


Q ss_pred             cCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCC
Q 011044          235 NFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIP  314 (495)
Q Consensus       235 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  314 (495)
                      ...+.+|..+..+++++.+++++|.+.+.++ .+. .+++|+.|++++|++++.+|..+.++++|++|+|++|+++|.+|
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccc-ccc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            6666666655666666666666666554333 222 34555555555555555555555555555555555555555444


Q ss_pred             ccccCCCcCCEEeCcCCc
Q 011044          315 HEIGNLRKLEWLMLSHNK  332 (495)
Q Consensus       315 ~~l~~l~~L~~L~l~~n~  332 (495)
                      . ++.+++|+.+++++|+
T Consensus       286 ~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             C-STTGGGSCGGGTCSSS
T ss_pred             C-cccCCCCCHHHhCCCc
Confidence            2 3445555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.5e-25  Score=217.81  Aligned_cols=300  Identities=29%  Similarity=0.387  Sum_probs=227.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .++++|++++++++..  ..++.+++|++|++++|++++. + .+.++++|++|++++|.+.+..+  +. .+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~~--l~-~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADITP--LA-NLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccccc--cc-ccccccccc
Confidence            4789999999998753  4588899999999999999854 3 38899999999999999865332  33 489999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCc-----------------------------------------cccCcccc
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFS-----------------------------------------GTIPKEIG  173 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----------------------------------------~~~~~~l~  173 (495)
                      +.++.+++..+.  .....+..+....|.+.                                         ......+.
T Consensus       117 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         117 LFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             CCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            998887643221  12223333332222110                                         01223456


Q ss_pred             CCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCccccccccccee
Q 011044          174 NLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKL  253 (495)
Q Consensus       174 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L  253 (495)
                      .+++++.+++++|.+++..|  +..+++|++|++++|.++. + ..+..+++|+.+++++|.+++..+  ++.+++|++|
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  268 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  268 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEe
Confidence            77889999999999886544  5677899999999999874 2 467889999999999999887543  7788999999


Q ss_pred             eccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcc
Q 011044          254 YLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKL  333 (495)
Q Consensus       254 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  333 (495)
                      +++++.+++. +. +. .++.++.+.+..|.+.+  ...+..+++++.|++++|++++..  .+..+++|++|++++|++
T Consensus       269 ~l~~~~l~~~-~~-~~-~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         269 KLGANQISNI-SP-LA-GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             ECCSSCCCCC-GG-GT-TCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred             eccCcccCCC-Cc-cc-ccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence            9999988743 32 22 67888999999998874  335788899999999999998643  378899999999999998


Q ss_pred             cccCCcCccCCCCCcEEEccCCcCceecCCCCCCCCCChhhhhhhhcC
Q 011044          334 VGVVPAPIFNLSTLISLQLHNNSLSGSLPSSADVPLPNLEELFLWEYG  381 (495)
Q Consensus       334 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~  381 (495)
                      ++ ++ .+..+++|++|++++|++++..|   ...+++|+.|++.+|+
T Consensus       342 ~~-l~-~l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         342 SD-VS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CC-CG-GGGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCCEE
T ss_pred             CC-Ch-hHcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCCCCc
Confidence            75 33 68899999999999999986544   3468899999887763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.9e-25  Score=207.83  Aligned_cols=270  Identities=24%  Similarity=0.330  Sum_probs=165.0

Q ss_pred             CCCccceeeeCCCCCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCC
Q 011044           41 SFCYWTGVTCDVRSHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELP  120 (495)
Q Consensus        41 ~~c~w~gv~c~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  120 (495)
                      +-|.|+.+.|..            .+++ .+|..+.  +.+++|+|++|+++...+..|.++++|++|++++|.+....|
T Consensus         8 c~c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~   72 (305)
T d1xkua_           8 CQCHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP   72 (305)
T ss_dssp             CEEETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred             CEecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccch
Confidence            447788888753            3343 3344332  456666776666664444456666667777776666653333


Q ss_pred             hhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCC--CCCChhhhC
Q 011044          121 PNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQ--GEIPEELGN  198 (495)
Q Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~  198 (495)
                      ..+. .+++|++|++++|+++ .+|..  ....++.|++.+|.+.+..+..+.....+..+....|...  ...+..+..
T Consensus        73 ~~f~-~l~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~  148 (305)
T d1xkua_          73 GAFA-PLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  148 (305)
T ss_dssp             TTTT-TCTTCCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             hhhh-CCCccCEecccCCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccc
Confidence            3333 3666777777766666 33432  2245666666666666544444555566666666655432  223345566


Q ss_pred             cccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccccc
Q 011044          199 LAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTL  278 (495)
Q Consensus       199 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  278 (495)
                      +++|+.+++++|.+. .++..+  +++|++|++++|...+..+..+..++.++.|++++|.+.+..+..+ ..+++|++|
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~-~~l~~L~~L  224 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLREL  224 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEE
T ss_pred             ccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc-cccccceee
Confidence            667777777777665 333322  4567777777777766666667777777777777777764333333 367777777


Q ss_pred             ccccceeeecccccccCCCCCCeeecccccccccCCc------cccCCCcCCEEeCcCCccc
Q 011044          279 SLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPH------EIGNLRKLEWLMLSHNKLV  334 (495)
Q Consensus       279 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~------~l~~l~~L~~L~l~~n~l~  334 (495)
                      +|++|.++ .+|..+..+++|++|++++|+|+.....      .+....+|+.|++++|++.
T Consensus       225 ~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            77777776 4566677777777777777777643222      2345677888888888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-23  Score=198.68  Aligned_cols=267  Identities=21%  Similarity=0.302  Sum_probs=216.7

Q ss_pred             CCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEc
Q 011044           80 SLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSL  159 (495)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  159 (495)
                      .+++++-+++.++ .+|..+.  +++++|++++|.+. .+|...+..+++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5677888888887 6777664  68999999999984 666654455999999999999999777888999999999999


Q ss_pred             ccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC--CcCchhhhcCCCCceeeCCCCcCC
Q 011044          160 SSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT--GTIPSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ++|+++ .+|..+  ...++.|.+.+|.+.+..+..+.....+..++...+...  ...+..+..+++|+.+++++|.+.
T Consensus        87 ~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            999998 455433  468899999999998766666777888888888877543  344567888999999999999887


Q ss_pred             CCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccc
Q 011044          238 GIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEI  317 (495)
Q Consensus       238 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l  317 (495)
                      .. +..  .+++|+.|++++|...+..+..+. .++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|..|
T Consensus       164 ~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l  238 (305)
T d1xkua_         164 TI-PQG--LPPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  238 (305)
T ss_dssp             SC-CSS--CCTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             cc-Ccc--cCCccCEEECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeeccccccc-cccccc
Confidence            54 332  357899999999988866665554 7889999999999998888888999999999999999998 567889


Q ss_pred             cCCCcCCEEeCcCCcccccCCcCc------cCCCCCcEEEccCCcCc
Q 011044          318 GNLRKLEWLMLSHNKLVGVVPAPI------FNLSTLISLQLHNNSLS  358 (495)
Q Consensus       318 ~~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~  358 (495)
                      ..+++|++|++++|+++......|      ....+|+.|++++|++.
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999999999999886543333      35678999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=6.3e-24  Score=207.72  Aligned_cols=278  Identities=29%  Similarity=0.442  Sum_probs=221.8

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      .+++++|++++|.+++..  .++++++|++|++++|++.+..  .+.++++|+.|+++++.+.+..+...   ...+..+
T Consensus        65 L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~---~~~~~~~  137 (384)
T d2omza2          65 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKN---LTNLNRL  137 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTT---CTTCSEE
T ss_pred             CCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccccccccccccccc---ccccccc
Confidence            368999999999998653  4999999999999999998543  38899999999999998764332221   3344444


Q ss_pred             EcccccCC-----------------------------------------ccCCcccCCCCCCCEEEcccCcCccccCccc
Q 011044          134 FLKYNMFH-----------------------------------------GKIPSTLSSCKQLRELSLSSNYFSGTIPKEI  172 (495)
Q Consensus       134 ~l~~n~l~-----------------------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  172 (495)
                      ....+.+.                                         ......+..+++++.+++++|.+++..|  +
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~  215 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--L  215 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             ccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--c
Confidence            44332211                                         0122345677899999999999986544  4


Q ss_pred             cCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccce
Q 011044          173 GNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQK  252 (495)
Q Consensus       173 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~  252 (495)
                      ..+++|++|++++|.++. + ..+..+++|+.|++++|.+++..  .+..+++|++|+++++.+.+..  .+..++.++.
T Consensus       216 ~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~  289 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTN  289 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccc
Confidence            667899999999999874 3 46889999999999999998543  4788999999999999998654  3678899999


Q ss_pred             eeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCc
Q 011044          253 LYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNK  332 (495)
Q Consensus       253 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  332 (495)
                      +.+..|.+.+ ++ .+. .+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .++.+++|++|++++|+
T Consensus       290 l~~~~n~l~~-~~-~~~-~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         290 LELNENQLED-IS-PIS-NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EECCSSCCSC-CG-GGG-GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC
T ss_pred             cccccccccc-cc-ccc-hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCc
Confidence            9999999874 33 233 6889999999999998643  37889999999999999984 44 58999999999999999


Q ss_pred             ccccCCcCccCCCCCcEEEccCC
Q 011044          333 LVGVVPAPIFNLSTLISLQLHNN  355 (495)
Q Consensus       333 l~~~~~~~~~~l~~L~~L~l~~n  355 (495)
                      +++..|  +.++++|+.|++++|
T Consensus       363 l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         363 ISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCChh--hccCCCCCEeeCCCC
Confidence            997654  889999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=202.69  Aligned_cols=221  Identities=24%  Similarity=0.253  Sum_probs=123.4

Q ss_pred             EcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcc-ccc
Q 011044           61 NISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLK-YNM  139 (495)
Q Consensus        61 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~-~n~  139 (495)
                      +.++++++ .+|..+.  +.+++|+|++|+++...+..|.++++|++|++++|.+... +......+..++.+... .+.
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTT
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccc
Confidence            44444454 3343332  3456666666666544445566666666666666665332 22333335555555543 333


Q ss_pred             CCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchh
Q 011044          140 FHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSS  219 (495)
Q Consensus       140 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  219 (495)
                      +....+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|.++...+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            44344555666666666666666655444445555566666666666665444455556666666666666666555555


Q ss_pred             hhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceee
Q 011044          220 IFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFS  286 (495)
Q Consensus       220 l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  286 (495)
                      +.++++|+.+++++|++.+..|..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~-~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCSSCEE
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc-ccccccCEEEecCCCCC
Confidence            6666666666666666666556666666666666666666653332332 35566666666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.3e-24  Score=198.49  Aligned_cols=239  Identities=19%  Similarity=0.225  Sum_probs=200.6

Q ss_pred             CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEE
Q 011044           54 SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESL  133 (495)
Q Consensus        54 ~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L  133 (495)
                      +..+++|+|++|.|+...+..|.++++|++|++++|.+....+..+.++..++.+....+.....++...+..+++|++|
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            45789999999999977777899999999999999999988888888999999998876555556665555669999999


Q ss_pred             EcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCC
Q 011044          134 FLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLT  213 (495)
Q Consensus       134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  213 (495)
                      ++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|+.+++++|.++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            99999988767777888999999999999999776778889999999999999998777888999999999999999999


Q ss_pred             CcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccc
Q 011044          214 GTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEI  293 (495)
Q Consensus       214 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  293 (495)
                      +..|..|..+++|++|++++|.+.+..+..++.+++|++|++++|.+...-+...  -...++.+....+.+....|..+
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~--l~~~l~~~~~~~~~~~C~~p~~l  268 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRL  268 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH--HHHHHHHCCSEECCCBEEESGGG
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH--HHHHHHhCcCCCCceEeCCchHH
Confidence            8889999999999999999999999888889999999999999998874433211  12345666666666655555554


Q ss_pred             c
Q 011044          294 G  294 (495)
Q Consensus       294 ~  294 (495)
                      .
T Consensus       269 ~  269 (284)
T d1ozna_         269 A  269 (284)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=179.83  Aligned_cols=199  Identities=25%  Similarity=0.260  Sum_probs=156.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ....+++.++++++ .+|+.+.  ++|++|+|++|.+++..+..|.++++|++|++++|.++ .+|..  ..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccccc
Confidence            34556788888888 4666553  57999999999998766678889999999999999885 44432  3488899999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|+++ ..+..+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|.+++
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            9999887 456678888888889888888887667777788888888888888886666667778888888888888887


Q ss_pred             cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccc
Q 011044          215 TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            66777788888888888888887 56666677788888888887664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-21  Score=177.95  Aligned_cols=201  Identities=22%  Similarity=0.247  Sum_probs=122.9

Q ss_pred             cCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCC
Q 011044           76 ANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLR  155 (495)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  155 (495)
                      .+...+.+++.+++.++ .+|..+.  +++++|+|++|.+. .+|...+..+++|++|++++|.++. ++ .++.+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            34555666777777776 4565543  46777777777774 3444433447777777777777663 32 345666777


Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN  235 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  235 (495)
                      +|++++|+++. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++|+.+++++|+
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            77777776663 34456666667777777666665555556666666666666666665445555556666666666666


Q ss_pred             CCCCCCcccccccccceeeccCcccccccchhhhhCCcccccccccccee
Q 011044          236 FTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDF  285 (495)
Q Consensus       236 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  285 (495)
                      +++..+..+..+++|++|++++|+++ .+|..++ .+++|+.|+|++|.+
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCB
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCCC
Confidence            66555555566666666666666665 5555444 445555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2.4e-16  Score=151.08  Aligned_cols=270  Identities=28%  Similarity=0.334  Sum_probs=169.5

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      .++++|+|++++++ .+|+   ..++|++|++++|+++ .+|..   ..+|+.|++++|.+. .++.    -.+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            46889999999987 4664   2578999999999998 66754   457899999999874 3432    135699999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+++.+|....
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            9999987 4554 67889999999998877632 22   2234555555444332  12234445555555555443321


Q ss_pred             ------------------cCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccc
Q 011044          215 ------------------TIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQ  276 (495)
Q Consensus       215 ------------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  276 (495)
                                        .....+..++.|+.+.+++|..... +.   ...++..+.+..+.+.. .+..    ...+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~---~~~~l~~~~~~~~~~~~-~~~~----~~~l~  247 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL----PQSLT  247 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC----CTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cc---ccccccccccccccccc-cccc----ccccc
Confidence                              1122345678889999988876543 22   23456667777666542 2211    11122


Q ss_pred             cccccccee----------------eecccccccCCCCCCeeecccccccccCCccccCCCcCCEEeCcCCcccccCCcC
Q 011044          277 TLSLYVNDF----------------SGAIPKEIGNLTKLTDLYLDQNKLQGKIPHEIGNLRKLEWLMLSHNKLVGVVPAP  340 (495)
Q Consensus       277 ~L~L~~n~l----------------~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  340 (495)
                      ..++..+.+                ...+......+++|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|. 
T Consensus       248 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~-  321 (353)
T d1jl5a_         248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE-  321 (353)
T ss_dssp             EEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC-
T ss_pred             ccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc-
Confidence            222111111                0112222344578999999999887 5554   3578889999999887 3553 


Q ss_pred             ccCCCCCcEEEccCCcCceecCC
Q 011044          341 IFNLSTLISLQLHNNSLSGSLPS  363 (495)
Q Consensus       341 ~~~l~~L~~L~l~~n~l~~~~~~  363 (495)
                        .+++|++|++++|++. .+|.
T Consensus       322 --~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         322 --LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             --CCTTCCEEECCSSCCS-SCCC
T ss_pred             --ccCCCCEEECcCCcCC-CCCc
Confidence              2467899999999987 6665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.9e-18  Score=153.00  Aligned_cols=217  Identities=18%  Similarity=0.178  Sum_probs=136.8

Q ss_pred             EEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc-
Q 011044           59 ALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY-  137 (495)
Q Consensus        59 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~-  137 (495)
                      .++.++.+++ .+|..+  .+++++|++++|.++...+..|.++++|++|++++|.+...++...+..+++++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4455566666 555544  257899999999988555567888999999999999887767666555688888888764 


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCCCCCChhhhCcc-cccEEEecCCcCCCc
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQGEIPEELGNLA-ELEMLWLQNNSLTGT  215 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~  215 (495)
                      |.+....+..|.++++|+++++++|.+....+ ..+..+..+..+...++.+....+..+.+++ .++.|++++|.++. 
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-  167 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-  167 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-
Confidence            45666666777888888888888887763322 1223344454555555555543344444443 56677777777763 


Q ss_pred             CchhhhcCCCCcee-eCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCcccccccc
Q 011044          216 IPSSIFSLSSLLNL-DLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSL  280 (495)
Q Consensus       216 ~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  280 (495)
                      ++......+++.++ .+++|.++...+..+..+++|++|++++|+++ .+|...+..+++|+.+++
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSE
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcC
Confidence            33333444444444 45556666554455666677777777777666 454443335555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.6e-17  Score=149.36  Aligned_cols=186  Identities=32%  Similarity=0.434  Sum_probs=92.4

Q ss_pred             CCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeC
Q 011044          152 KQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDL  231 (495)
Q Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  231 (495)
                      .+|++|++.+|.++. + ..+..+++|++|++++|.+++..  .+..+++|+++++++|.++. + ..+..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccccccc
Confidence            344444444444432 2 12444444444444444443221  14444444444444444431 1 23444455555555


Q ss_pred             CCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCCeeecccccccc
Q 011044          232 SLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLTDLYLDQNKLQG  311 (495)
Q Consensus       232 s~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  311 (495)
                      +++...+..  .+...+.+..+.++++.+....+  +. ..++|+.|++++|.+.+.  ..+.++++|+.|++++|++++
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--hhccccchhhhhchhhhhchhhh--hc-cccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            544443321  13344455555555554432211  11 445566666666655432  225566777777777776663


Q ss_pred             cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccC
Q 011044          312 KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHN  354 (495)
Q Consensus       312 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  354 (495)
                       ++ .++.+++|++|++++|++++..  .+.++++|+.|++++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence             22 3666777777777777766432  366777777777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-19  Score=181.52  Aligned_cols=329  Identities=21%  Similarity=0.184  Sum_probs=211.1

Q ss_pred             CCeEEEEcCCCCCcccC-chhccCCCCCCEEeCcCCcCCc----cCCccccCCCCCcEEEccCCcccccCChhHhh----
Q 011044           55 HRVAALNISGLNLTGTI-PSELANLSSLQALDLSFNWFYG----SIPSSIFNMSSLLSIYFNNNTLFGELPPNFCN----  125 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~----  125 (495)
                      .+|++||++++++++.. ...+..++++++|+|++|.++.    .++..+..+++|++|++++|.+...-...+..    
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46888888888887642 2345667888888888888774    23455678888888888888875322223332    


Q ss_pred             cCCCCCEEEcccccCCcc----CCcccCCCCCCCEEEcccCcCccccC--------------------------------
Q 011044          126 QMSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNYFSGTIP--------------------------------  169 (495)
Q Consensus       126 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------------------  169 (495)
                      ...+|++|++++|.+++.    ++..+..+++|++|++++|.+.....                                
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            234788888888888653    34567778888888888887642100                                


Q ss_pred             -ccccCCCCCCEEEccCC-----------------------------CCCCC----CChhhhCcccccEEEecCCcCCCc
Q 011044          170 -KEIGNLTKLTRLNLRQN-----------------------------KLQGE----IPEELGNLAELEMLWLQNNSLTGT  215 (495)
Q Consensus       170 -~~l~~l~~L~~L~L~~n-----------------------------~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~  215 (495)
                       ..+.....++.++++++                             .+...    ....+...+.++.+++.+|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence             00111234444444433                             22211    011234557788999988876421


Q ss_pred             -----CchhhhcCCCCceeeCCCCcCCCCC----CcccccccccceeeccCcccccccchhh----hhCCcccccccccc
Q 011044          216 -----IPSSIFSLSSLLNLDLSLNNFTGII----PSSIGNLSSLQKLYLSDNQLSGELPANI----GNNLPSLQTLSLYV  282 (495)
Q Consensus       216 -----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~L~~  282 (495)
                           ..........++.+++++|.+....    ...+...+.++.+++++|.+.+.....+    ......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 2233345678999999999876432    2234566789999999998864333322    22345789999999


Q ss_pred             ceeeecccc----cccCCCCCCeeeccccccccc----CCcccc-CCCcCCEEeCcCCccccc----CCcCccCCCCCcE
Q 011044          283 NDFSGAIPK----EIGNLTKLTDLYLDQNKLQGK----IPHEIG-NLRKLEWLMLSHNKLVGV----VPAPIFNLSTLIS  349 (495)
Q Consensus       283 n~l~~~~~~----~l~~l~~L~~L~L~~n~i~~~----~~~~l~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~  349 (495)
                      +.++.....    .+...++|++|+|++|++++.    +...+. ..+.|++|++++|.+++.    +...+..+++|++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            888654332    345567899999999998753    222332 467799999999998753    3334556789999


Q ss_pred             EEccCCcCceecCC----CCCCCCCChhhhhhhhcCCC
Q 011044          350 LQLHNNSLSGSLPS----SADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       350 L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~~~~~  383 (495)
                      |++++|+++.....    ........|+.+.+.++...
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            99999998743211    11123346777877776654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.2e-16  Score=143.51  Aligned_cols=187  Identities=20%  Similarity=0.341  Sum_probs=83.9

Q ss_pred             CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044           77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE  156 (495)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (495)
                      .+.+|++|++.+|.++. + ..+.++++|++|++++|.+.+..|  + ..+++|+++++++|.++. + ..+.++++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l-~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~  111 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--L-KNLTKITELELSGNPLKN-V-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--G-TTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--c-cccccccccccccccccc-c-ccccccccccc
Confidence            34444444444444442 2 124444445555554444432221  1 224455555555544431 1 23444555555


Q ss_pred             EEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcC
Q 011044          157 LSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF  236 (495)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  236 (495)
                      ++++++...+.  ..+...+.++.+.++++.+...  ..+.++++|+.|++++|.+...  ..+.++++|++|++++|++
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence            55555444321  2233444555555555444322  1244445555555555554422  2244555555555555555


Q ss_pred             CCCCCcccccccccceeeccCcccccccchhhhhCCccccccccc
Q 011044          237 TGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLY  281 (495)
Q Consensus       237 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  281 (495)
                      ++..  .++.+++|++|++++|+++ .++. +. .+++|+.|+++
T Consensus       186 ~~l~--~l~~l~~L~~L~Ls~N~lt-~i~~-l~-~l~~L~~L~ls  225 (227)
T d1h6ua2         186 SDIS--PLASLPNLIEVHLKNNQIS-DVSP-LA-NTSNLFIVTLT  225 (227)
T ss_dssp             CCCG--GGGGCTTCCEEECTTSCCC-BCGG-GT-TCTTCCEEEEE
T ss_pred             CCCh--hhcCCCCCCEEECcCCcCC-CCcc-cc-cCCCCCEEEee
Confidence            4321  2445555555555555554 2221 22 45555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.7e-17  Score=148.51  Aligned_cols=215  Identities=16%  Similarity=0.133  Sum_probs=159.7

Q ss_pred             CCCccceeeeCCC---------CCCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCC-ccccCCCCCcEEEc
Q 011044           41 SFCYWTGVTCDVR---------SHRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIP-SSIFNMSSLLSIYF  110 (495)
Q Consensus        41 ~~c~w~gv~c~~~---------~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l  110 (495)
                      +.|.+..+.|...         +..+++|+|++|.++...+..|.++++|++|++++|.+...++ ..|.++++++++.+
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            3466777777531         3579999999999987666789999999999999999876554 56889999999998


Q ss_pred             cCC-cccccCChhHhhcCCCCCEEEcccccCCccCCc-ccCCCCCCCEEEcccCcCccccCccccCCC-CCCEEEccCCC
Q 011044          111 NNN-TLFGELPPNFCNQMSNLESLFLKYNMFHGKIPS-TLSSCKQLRELSLSSNYFSGTIPKEIGNLT-KLTRLNLRQNK  187 (495)
Q Consensus       111 ~~n-~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~  187 (495)
                      ..+ .+ ..++...+..+++|++|++++|.+....+. .+..++.+..+...++.+....+..+..++ .++.|++++|.
T Consensus        86 ~~~n~l-~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          86 EKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             ECCTTC-CEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccccc-cccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            764 55 445555555699999999999998743222 234455666666677777755555666654 78999999999


Q ss_pred             CCCCCChhhhCcccccEE-EecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccC
Q 011044          188 LQGEIPEELGNLAELEML-WLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSD  257 (495)
Q Consensus       188 l~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~  257 (495)
                      ++.. +.......+++.+ .+.+|.++...+..|.++++|++|++++|+++...+..+.++++|+.+++.+
T Consensus       165 l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         165 IQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            9844 4444445555555 5677888754455688999999999999999977677788888887776643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=141.51  Aligned_cols=164  Identities=27%  Similarity=0.379  Sum_probs=84.6

Q ss_pred             CCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEE
Q 011044           78 LSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLREL  157 (495)
Q Consensus        78 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  157 (495)
                      +..|++|++++|.+++. + .+..+++|++|++++|.+.+ ++. + ..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~~-~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-ccc-c-ccCccccccccccccccc-cc-ccccccccccc
Confidence            44555666666555432 1 24555555555555555533 221 2 225556666666555552 22 35555666666


Q ss_pred             EcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCC
Q 011044          158 SLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ++++|.+..  ...+..+++++.+++++|.+++  +..+..+++|+.+++++|.+++. + .+.++++|++|++++|.++
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence            666555542  1235555566666666665542  22344555566666666655532 2 2555556666666665554


Q ss_pred             CCCCcccccccccceeecc
Q 011044          238 GIIPSSIGNLSSLQKLYLS  256 (495)
Q Consensus       238 ~~~~~~l~~~~~L~~L~l~  256 (495)
                      +. + .+..+++|+.|+++
T Consensus       192 ~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 DL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             BC-G-GGTTCTTCSEEEEE
T ss_pred             CC-h-hhcCCCCCCEEEcc
Confidence            32 2 35555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=3.4e-17  Score=143.00  Aligned_cols=127  Identities=24%  Similarity=0.281  Sum_probs=87.7

Q ss_pred             EEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccC-CccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccc
Q 011044           60 LNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN  138 (495)
Q Consensus        60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n  138 (495)
                      ++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|++|++++|.+....+..+.. +++|++|++++|
T Consensus        13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-~~~L~~L~Ls~N   88 (192)
T d1w8aa_          13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGEN   88 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSC
T ss_pred             EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-ccccceeeeccc
Confidence            444556666 4555442  67888888888887544 455677788888888887775544444443 777777777777


Q ss_pred             cCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCC
Q 011044          139 MFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQG  190 (495)
Q Consensus       139 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  190 (495)
                      ++....+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            7776666677777777777777777776666667777777777777776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.2e-16  Score=136.76  Aligned_cols=148  Identities=26%  Similarity=0.395  Sum_probs=67.6

Q ss_pred             CCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCE
Q 011044           77 NLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRE  156 (495)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  156 (495)
                      .++++++|++++|.++. + +.+..+++|++|++++|.+++. +. +. .+++|++|++++|.+.. ++ .+.++++|+.
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~-~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-TP-LK-NLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-GG-GT-TCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-cc-cc-CCccccccccccccccc-cc-cccccccccc
Confidence            34455555555555442 1 1244445555555555544322 11 22 24555555555554432 11 2445555555


Q ss_pred             EEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcC
Q 011044          157 LSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNF  236 (495)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  236 (495)
                      |++++|.+...  ..+..+++|+.|++++|.+.. + +.+..+++|++|++.+|.+++.  ..+.++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            55555444321  224445555555555555432 1 2344555555555555555422  1244555555555555554


Q ss_pred             C
Q 011044          237 T  237 (495)
Q Consensus       237 ~  237 (495)
                      +
T Consensus       185 ~  185 (199)
T d2omxa2         185 S  185 (199)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.3e-16  Score=138.68  Aligned_cols=164  Identities=23%  Similarity=0.315  Sum_probs=137.9

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      ..++.|+++++.+++.  ..+..+++|++|++++|++++..  .+..+++|++|++++|.+. .+| .+.. +++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKD-LKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTT-CTTCCEEE
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-cccc-cccccccc
Confidence            4689999999999864  34889999999999999998643  3688999999999999985 454 3444 99999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+..  ...+.++++++.+++++|.+++  +..+..+++|+++++++|.+++ ++ .+.++++|++|++++|.++.
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC
Confidence            99998863  3468889999999999999874  3457789999999999999985 33 48999999999999999984


Q ss_pred             cCchhhhcCCCCceeeCCC
Q 011044          215 TIPSSIFSLSSLLNLDLSL  233 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L~Ls~  233 (495)
                       ++ .+.++++|++|+|++
T Consensus       193 -l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEccC
Confidence             44 689999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=4.8e-15  Score=141.85  Aligned_cols=266  Identities=26%  Similarity=0.291  Sum_probs=177.2

Q ss_pred             CCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEE
Q 011044           79 SSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELS  158 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  158 (495)
                      .++++|+|+++.++ .+|+.   .++|++|++++|.++ .+|..    +.+|+.|++.+|.++ .++..   .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLK-ALSDL---PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-CCCSC---CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccc-hhhhh---cccccccc
Confidence            46899999999997 67753   578999999999995 67753    578999999999887 33321   14699999


Q ss_pred             cccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCC
Q 011044          159 LSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                      +++|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+..|....
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            9999998 4564 67899999999999988743 32   3456677777766553  33456778888899888876543


Q ss_pred             CC------------------CcccccccccceeeccCcccccccchhhhhCCccccccccccceeeecccccccCCCCCC
Q 011044          239 II------------------PSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIPKEIGNLTKLT  300 (495)
Q Consensus       239 ~~------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  300 (495)
                      ..                  ...+..++.|+.+++++|... .++.    ...++..+.+..+.+... +.   ....+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~-~~---~~~~l~  247 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLT  247 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccc----cccccccccccccccccc-cc---cccccc
Confidence            21                  112344566777777776554 3332    233455555555544321 11   112222


Q ss_pred             eeecccccccc----------------cCCccccCCCcCCEEeCcCCcccccCCcCccCCCCCcEEEccCCcCceecCCC
Q 011044          301 DLYLDQNKLQG----------------KIPHEIGNLRKLEWLMLSHNKLVGVVPAPIFNLSTLISLQLHNNSLSGSLPSS  364 (495)
Q Consensus       301 ~L~L~~n~i~~----------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  364 (495)
                      ..++..+.+.+                .+......+++|++|++++|++. .+|.   .+++|+.|++++|+++ .+|..
T Consensus       248 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~  322 (353)
T d1jl5a_         248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL  322 (353)
T ss_dssp             EEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC
T ss_pred             ccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc
Confidence            22222221111                11122345689999999999988 4554   3678999999999997 66643


Q ss_pred             CCCCCCChhhhhhhhcCCC
Q 011044          365 ADVPLPNLEELFLWEYGRE  383 (495)
Q Consensus       365 ~~~~l~~L~~L~l~~~~~~  383 (495)
                          +++|++|++++|...
T Consensus       323 ----~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         323 ----PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             ----CTTCCEEECCSSCCS
T ss_pred             ----cCCCCEEECcCCcCC
Confidence                468999999888754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.3e-16  Score=135.20  Aligned_cols=160  Identities=29%  Similarity=0.419  Sum_probs=133.6

Q ss_pred             CCeEEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEE
Q 011044           55 HRVAALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLF  134 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~  134 (495)
                      +++++|++++++++..  ..++.+++|++|++++|++++..+  +.++++|++|++++|.+. .++ .+. .+++|+.|+
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLA-NLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEEE
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccc-ccccccccc
Confidence            5799999999999853  458899999999999999986443  899999999999999884 343 343 499999999


Q ss_pred             cccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCC
Q 011044          135 LKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTG  214 (495)
Q Consensus       135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  214 (495)
                      +++|.+..  ...+..+++|+.|++++|.+.. + ..+..+++|++|++.+|.+++. + .++++++|++|++++|+++.
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence            99998874  3457889999999999999873 3 4588999999999999999853 3 48999999999999999984


Q ss_pred             cCchhhhcCCCCcee
Q 011044          215 TIPSSIFSLSSLLNL  229 (495)
Q Consensus       215 ~~~~~l~~l~~L~~L  229 (495)
                       + +.+..+++|++|
T Consensus       187 -i-~~l~~L~~L~~L  199 (199)
T d2omxa2         187 -I-SVLAKLTNLESL  199 (199)
T ss_dssp             -C-GGGGGCTTCSEE
T ss_pred             -C-ccccCCCCCCcC
Confidence             3 357888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=2.4e-16  Score=137.51  Aligned_cols=171  Identities=21%  Similarity=0.266  Sum_probs=96.4

Q ss_pred             EEEcccccCCccCCcccCCCCCCCEEEcccCcCcccc-CccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCC
Q 011044          132 SLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTI-PKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN  210 (495)
Q Consensus       132 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  210 (495)
                      +++.++++++ .+|..+.  +++++|+|++|.+++.+ +..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4455555554 3444332  45566666666665422 344556666666666666666555666666666666666666


Q ss_pred             cCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhCCccccccccccceeeeccc
Q 011044          211 SLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNNLPSLQTLSLYVNDFSGAIP  290 (495)
Q Consensus       211 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  290 (495)
                      +++...+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+.........  ...++.+.+..+.+....|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCC
Confidence            66655555666666777777777776666666666677777777777766533222211  1234455555555544444


Q ss_pred             ccccCCCCCCeeeccccccc
Q 011044          291 KEIGNLTKLTDLYLDQNKLQ  310 (495)
Q Consensus       291 ~~l~~l~~L~~L~L~~n~i~  310 (495)
                      ..+   ..++.++++.+.+.
T Consensus       167 ~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             TTT---TTSBGGGSCTTTCC
T ss_pred             hhh---cCCEeeecCHhhCc
Confidence            322   33444555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.6e-17  Score=151.31  Aligned_cols=223  Identities=21%  Similarity=0.235  Sum_probs=129.5

Q ss_pred             EEEEcCCCCCcccCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEccc
Q 011044           58 AALNISGLNLTGTIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKY  137 (495)
Q Consensus        58 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~  137 (495)
                      ++|||+++.+.+.....+.. ..+..+.+....+..... ......+|++|++++|.+.+.....+...+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            36788877665332222211 235566666555442222 2344568888888888876665566666788888888888


Q ss_pred             ccCCccCCcccCCCCCCCEEEcccC-cCccc-cCccccCCCCCCEEEccCCC-CCCC-CChhhh-CcccccEEEecCCc-
Q 011044          138 NMFHGKIPSTLSSCKQLRELSLSSN-YFSGT-IPKEIGNLTKLTRLNLRQNK-LQGE-IPEELG-NLAELEMLWLQNNS-  211 (495)
Q Consensus       138 n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~-~l~~L~~L~l~~n~-  211 (495)
                      |.+++..+..+..+++|++|++++| .++.. +...+..+++|++|++++|. ++.. +...+. ..++|+.|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            8887766777778888888888885 44422 11223467888888888764 3311 112222 34677777777642 


Q ss_pred             -CCCc-CchhhhcCCCCceeeCCCCc-CCCCCCcccccccccceeeccCc-ccccccchhhhhCCccccccccccc
Q 011044          212 -LTGT-IPSSIFSLSSLLNLDLSLNN-FTGIIPSSIGNLSSLQKLYLSDN-QLSGELPANIGNNLPSLQTLSLYVN  283 (495)
Q Consensus       212 -l~~~-~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~L~~n  283 (495)
                       ++.. +...+..+++|++|++++|. +++.....+..+++|++|++++| .+++.....+. .+++|+.|++.++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC
Confidence             3221 22223456777777776653 44444455556666666666664 34433333333 3445555554444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-16  Score=148.93  Aligned_cols=182  Identities=21%  Similarity=0.207  Sum_probs=102.8

Q ss_pred             CCCCCCEEEcccCcCccc-cCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCC-cCCCc-CchhhhcCCCC
Q 011044          150 SCKQLRELSLSSNYFSGT-IPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNN-SLTGT-IPSSIFSLSSL  226 (495)
Q Consensus       150 ~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L  226 (495)
                      ...+|++|+++++.++.. +...+..+++|++|++++|.+++..+..++.+++|++|++++| .++.. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345667777776665533 2333556667777777777666555566666677777777664 33321 11223456677


Q ss_pred             ceeeCCCCc-CCCC-CCcccc-cccccceeeccCc--ccccccchhhhhCCccccccccccc-eeeecccccccCCCCCC
Q 011044          227 LNLDLSLNN-FTGI-IPSSIG-NLSSLQKLYLSDN--QLSGELPANIGNNLPSLQTLSLYVN-DFSGAIPKEIGNLTKLT  300 (495)
Q Consensus       227 ~~L~Ls~n~-l~~~-~~~~l~-~~~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~  300 (495)
                      ++|++++|. +++. +...+. .+++|+.|+++++  .+++.....+...+++|++|++++| .+++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            777776653 2211 111122 2356777777654  2332222333445667777777665 35555555666677777


Q ss_pred             eeecccc-cccccCCccccCCCcCCEEeCcCC
Q 011044          301 DLYLDQN-KLQGKIPHEIGNLRKLEWLMLSHN  331 (495)
Q Consensus       301 ~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n  331 (495)
                      +|++++| .+++.....++.+++|++|++++|
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777774 455544455666677777777666

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7e-18  Score=167.92  Aligned_cols=303  Identities=19%  Similarity=0.190  Sum_probs=201.9

Q ss_pred             CCCCEEeCcCCcCCccC-CccccCCCCCcEEEccCCccccc----CChhHhhcCCCCCEEEcccccCCcc----CCcccC
Q 011044           79 SSLQALDLSFNWFYGSI-PSSIFNMSSLLSIYFNNNTLFGE----LPPNFCNQMSNLESLFLKYNMFHGK----IPSTLS  149 (495)
Q Consensus        79 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~  149 (495)
                      ++|++|++++|++++.. ..-+..++++++|+|++|.++..    +...+ ..+++|++|+|++|.++..    +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998642 34466789999999999988632    22333 4489999999999998642    223332


Q ss_pred             -CCCCCCEEEcccCcCccc----cCccccCCCCCCEEEccCCCCCCCCC-------------------------------
Q 011044          150 -SCKQLRELSLSSNYFSGT----IPKEIGNLTKLTRLNLRQNKLQGEIP-------------------------------  193 (495)
Q Consensus       150 -~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~-------------------------------  193 (495)
                       ...+|++|++++|.++..    ++..+..+++|++|++++|.+.....                               
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             335899999999998754    34567788999999999997642100                               


Q ss_pred             --hhhhCcccccEEEecCCcCC-----------------------------Cc----CchhhhcCCCCceeeCCCCcCCC
Q 011044          194 --EELGNLAELEMLWLQNNSLT-----------------------------GT----IPSSIFSLSSLLNLDLSLNNFTG  238 (495)
Q Consensus       194 --~~l~~l~~L~~L~l~~n~l~-----------------------------~~----~~~~l~~l~~L~~L~Ls~n~l~~  238 (495)
                        ..+.....++.++++++...                             ..    ....+...+.++.+.++.|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence              00112234555555443321                             00    11223467889999999987542


Q ss_pred             C-----CCcccccccccceeeccCcccccccchhh---hhCCccccccccccceeeeccccc----c-cCCCCCCeeecc
Q 011044          239 I-----IPSSIGNLSSLQKLYLSDNQLSGELPANI---GNNLPSLQTLSLYVNDFSGAIPKE----I-GNLTKLTDLYLD  305 (495)
Q Consensus       239 ~-----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~----l-~~l~~L~~L~L~  305 (495)
                      .     ..........++.+++++|.+........   ....+.++.+++++|.++......    + .....|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence            2     22233456789999999998764322211   124678999999999886432222    1 234689999999


Q ss_pred             cccccccCCc----cccCCCcCCEEeCcCCcccccC----CcCcc-CCCCCcEEEccCCcCcee----cCCCCCCCCCCh
Q 011044          306 QNKLQGKIPH----EIGNLRKLEWLMLSHNKLVGVV----PAPIF-NLSTLISLQLHNNSLSGS----LPSSADVPLPNL  372 (495)
Q Consensus       306 ~n~i~~~~~~----~l~~l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L  372 (495)
                      +|.++.....    .+...++|++|+|++|++.+..    +..+. ..+.|++|++++|.++..    +... ...+++|
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~-l~~~~~L  399 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSL  399 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH-HhcCCCC
Confidence            9988764322    3446678999999999987532    22222 467799999999999742    1111 1236889


Q ss_pred             hhhhhhhcCCC
Q 011044          373 EELFLWEYGRE  383 (495)
Q Consensus       373 ~~L~l~~~~~~  383 (495)
                      ++|++.+|..+
T Consensus       400 ~~L~Ls~N~i~  410 (460)
T d1z7xw1         400 RELDLSNNCLG  410 (460)
T ss_dssp             CEEECCSSSCC
T ss_pred             CEEECCCCcCC
Confidence            99999888754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=7.1e-16  Score=147.60  Aligned_cols=191  Identities=20%  Similarity=0.192  Sum_probs=94.3

Q ss_pred             CchhccCCCCCCEEeCcCCcCCcc----CCccccCCCCCcEEEccCCccc---ccCChhH------hhcCCCCCEEEccc
Q 011044           71 IPSELANLSSLQALDLSFNWFYGS----IPSSIFNMSSLLSIYFNNNTLF---GELPPNF------CNQMSNLESLFLKY  137 (495)
Q Consensus        71 ~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~---~~~p~~~------~~~l~~L~~L~l~~  137 (495)
                      +...+.+...|++|+|++|.+...    +...+...++|+.++++++...   ...+..+      ...+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344566677788888887776542    3334566677777777766432   1111111      11256667777766


Q ss_pred             ccCCcc----CCcccCCCCCCCEEEcccCcCccccCcc-------------ccCCCCCCEEEccCCCCCCCC----Chhh
Q 011044          138 NMFHGK----IPSTLSSCKQLRELSLSSNYFSGTIPKE-------------IGNLTKLTRLNLRQNKLQGEI----PEEL  196 (495)
Q Consensus       138 n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~----~~~l  196 (495)
                      |.++..    +...+..+++|++|++++|.+.......             ....+.|+.+.+++|.+....    ...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            666543    2223345566666666666553211110             123455666666666554221    1223


Q ss_pred             hCcccccEEEecCCcCCCc-----CchhhhcCCCCceeeCCCCcCCCC----CCcccccccccceeeccCcccc
Q 011044          197 GNLAELEMLWLQNNSLTGT-----IPSSIFSLSSLLNLDLSLNNFTGI----IPSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       197 ~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ..++.|+.|++++|.++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3445555566555555421     112234445555555555544321    1122334444555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.9e-15  Score=144.49  Aligned_cols=231  Identities=19%  Similarity=0.239  Sum_probs=157.5

Q ss_pred             CCeEEEEcCCCCCccc----CchhccCCCCCCEEeCcCCcCCcc----------CCccccCCCCCcEEEccCCcccccCC
Q 011044           55 HRVAALNISGLNLTGT----IPSELANLSSLQALDLSFNWFYGS----------IPSSIFNMSSLLSIYFNNNTLFGELP  120 (495)
Q Consensus        55 ~~l~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----------~~~~l~~l~~L~~L~l~~n~~~~~~p  120 (495)
                      ..++.|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|++|++++|.+...-.
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            5799999999988654    334567789999999998754321          22345678999999999998865432


Q ss_pred             hhH---hhcCCCCCEEEcccccCCccCCcc-------------cCCCCCCCEEEcccCcCccc----cCccccCCCCCCE
Q 011044          121 PNF---CNQMSNLESLFLKYNMFHGKIPST-------------LSSCKQLRELSLSSNYFSGT----IPKEIGNLTKLTR  180 (495)
Q Consensus       121 ~~~---~~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~  180 (495)
                      ..+   ...+++|++|++++|.+.......             ....+.|+.+.+++|.+...    +...+..++.|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence            222   234899999999999875321111             13567899999999987633    2334566789999


Q ss_pred             EEccCCCCCCC-----CChhhhCcccccEEEecCCcCCCc----CchhhhcCCCCceeeCCCCcCCCCCCccc----c--
Q 011044          181 LNLRQNKLQGE-----IPEELGNLAELEMLWLQNNSLTGT----IPSSIFSLSSLLNLDLSLNNFTGIIPSSI----G--  245 (495)
Q Consensus       181 L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~--  245 (495)
                      |++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++.....+    .  
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            99999988642     223466788999999999988632    44567789999999999999875422222    2  


Q ss_pred             cccccceeeccCcccccccchhhh----hCCcccccccccccee
Q 011044          246 NLSSLQKLYLSDNQLSGELPANIG----NNLPSLQTLSLYVNDF  285 (495)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l  285 (495)
                      ..+.|++|++++|.++......+.    ...+.|++|++++|.+
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            234677777777776533222221    1234455555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.4e-14  Score=117.11  Aligned_cols=128  Identities=16%  Similarity=0.161  Sum_probs=69.1

Q ss_pred             ccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCC
Q 011044           99 IFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKL  178 (495)
Q Consensus        99 l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (495)
                      +.++.++++|++++|.++ .++. +...+++|+.|++++|.++. + +.+..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            334445555555555552 3332 22235666666666666652 2 235666677777777777664444444556677


Q ss_pred             CEEEccCCCCCCCCC-hhhhCcccccEEEecCCcCCCcC---chhhhcCCCCceee
Q 011044          179 TRLNLRQNKLQGEIP-EELGNLAELEMLWLQNNSLTGTI---PSSIFSLSSLLNLD  230 (495)
Q Consensus       179 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~  230 (495)
                      ++|++++|.+..... ..+..+++|++|++++|.++...   +..+..+|+|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777776653211 24556666666666666654221   11344555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.2e-13  Score=108.92  Aligned_cols=101  Identities=26%  Similarity=0.342  Sum_probs=47.1

Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCc
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNN  235 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  235 (495)
                      +|++++|.++ .++ .+..+++|++|++++|.++ .+|..++.+++|+.|++++|.++. ++ .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4444444444 222 2444444555555555444 334444445555555555554442 22 24445555555555555


Q ss_pred             CCCCC-CcccccccccceeeccCcccc
Q 011044          236 FTGII-PSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       236 l~~~~-~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ++... ...+..+++|+.|++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54332 133445555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.5e-14  Score=117.41  Aligned_cols=107  Identities=22%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             CCCCCEEEcccccCCccCCcccCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEE
Q 011044          127 MSNLESLFLKYNMFHGKIPSTLSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLW  206 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  206 (495)
                      +.++++|++++|+++ .++..+..+++|++|++++|.++. + +.+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            344555555555554 233333445555555555555542 2 2244455555555555554432222333444455555


Q ss_pred             ecCCcCCCcC-chhhhcCCCCceeeCCCCcC
Q 011044          207 LQNNSLTGTI-PSSIFSLSSLLNLDLSLNNF  236 (495)
Q Consensus       207 l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l  236 (495)
                      +++|.++... ...+..+++|++|++++|.+
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             eccccccccccccccccccccchhhcCCCcc
Confidence            5444443211 02233344444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.4e-13  Score=107.76  Aligned_cols=87  Identities=28%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             cCCCCCCCEEEcccCcCccccCccccCCCCCCEEEccCCCCCCCCChhhhCcccccEEEecCCcCCCcC-chhhhcCCCC
Q 011044          148 LSSCKQLRELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNKLQGEIPEELGNLAELEMLWLQNNSLTGTI-PSSIFSLSSL  226 (495)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L  226 (495)
                      +.++++|++|++++|.++ .+|..++.+++|++|++++|.++. ++ .+..+++|+.|++++|.++... ...+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            444444444444444444 233344444444444444444442 22 2444444555555554444221 1234445555


Q ss_pred             ceeeCCCCcCC
Q 011044          227 LNLDLSLNNFT  237 (495)
Q Consensus       227 ~~L~Ls~n~l~  237 (495)
                      +.|++++|.++
T Consensus        93 ~~L~l~~N~i~  103 (124)
T d1dcea3          93 VLLNLQGNSLC  103 (124)
T ss_dssp             CEEECTTSGGG
T ss_pred             CEEECCCCcCC
Confidence            55555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=5.4e-14  Score=122.54  Aligned_cols=114  Identities=25%  Similarity=0.291  Sum_probs=76.8

Q ss_pred             cCchhccCCCCCCEEeCcCCcCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccccCCccCCcccC
Q 011044           70 TIPSELANLSSLQALDLSFNWFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYNMFHGKIPSTLS  149 (495)
Q Consensus        70 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  149 (495)
                      .++..+..+++|++|+|++|.|+. ++ .+.++++|++|++++|.+. .+|..... +++|++|++++|.++. + ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCC-H-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc-cccccccccccccccc-c-cccc
Confidence            345678888899999999888873 43 4777888888888888774 45543332 5667788887777763 2 3456


Q ss_pred             CCCCCCEEEcccCcCccccC-ccccCCCCCCEEEccCCCCC
Q 011044          150 SCKQLRELSLSSNYFSGTIP-KEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       150 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  189 (495)
                      .+++|++|++++|.++.... ..+..+++|++|++++|.+.
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            66777777777777663211 34566667777777766544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.7e-13  Score=117.18  Aligned_cols=113  Identities=27%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             CChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCCCCCCcccccccccceeeccCcccccccchhhhhC
Q 011044          192 IPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFTGIIPSSIGNLSSLQKLYLSDNQLSGELPANIGNN  271 (495)
Q Consensus       192 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  271 (495)
                      ++..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.++. ++.....+++|+.|++++|.++ .++ .+. .
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~-~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SLS-GIE-K  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC-CHH-HHH-H
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccc-ccc-ccc-c
Confidence            34455555666666666655552 22 35555555555555555542 2222233344555555555554 221 122 3


Q ss_pred             Cccccccccccceeeecc-cccccCCCCCCeeeccccccc
Q 011044          272 LPSLQTLSLYVNDFSGAI-PKEIGNLTKLTDLYLDQNKLQ  310 (495)
Q Consensus       272 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~  310 (495)
                      +++|+.|++++|.++... ...+..+++|+.|++++|++.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            444555555555443211 123444444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.5e-11  Score=97.96  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=37.9

Q ss_pred             EEcCCCCCcccCchhccCCCCCCEEeCcCC-cCCccCCccccCCCCCcEEEccCCcccccCChhHhhcCCCCCEEEcccc
Q 011044           60 LNISGLNLTGTIPSELANLSSLQALDLSFN-WFYGSIPSSIFNMSSLLSIYFNNNTLFGELPPNFCNQMSNLESLFLKYN  138 (495)
Q Consensus        60 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n  138 (495)
                      ++..+++++ ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|.+. .++...+..+++|++|+|++|
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSS
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-CcccccccccccccceeccCC
Confidence            333444444 23444556666666666544 354333444555555555555555543 222222222444444444444


Q ss_pred             cCC
Q 011044          139 MFH  141 (495)
Q Consensus       139 ~l~  141 (495)
                      +++
T Consensus        91 ~l~   93 (156)
T d2ifga3          91 ALE   93 (156)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-10  Score=95.75  Aligned_cols=103  Identities=25%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             EEEcccCcCccccCccccCCCCCCEEEccCCC-CCCCCChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCC
Q 011044          156 ELSLSSNYFSGTIPKEIGNLTKLTRLNLRQNK-LQGEIPEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLN  234 (495)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  234 (495)
                      .++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|.++...+.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444443333 233344444455555554332 43333334455555555555555555444444555555555555555


Q ss_pred             cCCCCCCcccccccccceeeccCccc
Q 011044          235 NFTGIIPSSIGNLSSLQKLYLSDNQL  260 (495)
Q Consensus       235 ~l~~~~~~~l~~~~~L~~L~l~~n~l  260 (495)
                      +++...+..+.. .+|+.|++++|.+
T Consensus        91 ~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             CCcccChhhhcc-ccccccccCCCcc
Confidence            555433333332 2455666665554

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.5e-09  Score=94.65  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=60.7

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.-..+..+.++|||||||++.|++|+..|...    +.+..+.++.......  ...+.             .+...+.
T Consensus       172 E~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~----~~~~~~~~~~i~~~~~--~~~p~-------------~~~~~l~  232 (263)
T d1sm2a_         172 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE----NRSNSEVVEDISTGFR--LYKPR-------------LASTHVY  232 (263)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC----SCCHHHHHHHHHHTCC--CCCCT-------------TSCHHHH
T ss_pred             HHhcCCCCCchhhhcchHHHHHHHHHCCCCCCC----CCCHHHHHHHHHhcCC--CCCcc-------------ccCHHHH
Confidence            333345667889999999999999997666322    2333333333222110  01111             1233477


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ++...|.+.+|.+||+|.||++.|++|++
T Consensus       233 ~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         233 QIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            89999999999999999999999999875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.2e-09  Score=99.84  Aligned_cols=89  Identities=13%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ..+..+.++||||||+++.|++||+.|...    +.+..++......+....  ++.             .+...+.++.
T Consensus       207 ~~~~~~~ksDI~SfGivl~El~t~~~p~~~----~~~~~~~~~~i~~g~~~~--~p~-------------~~~~~l~~li  267 (311)
T d1r0pa_         207 QTQKFTTKSDVWSFGVLLWELMTRGAPPYP----DVNTFDITVYLLQGRRLL--QPE-------------YCPDPLYEVM  267 (311)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSCC----------CHHHHHTTCCCC--CCT-------------TCCHHHHHHH
T ss_pred             hcCCCCChhHhhhhHHHHHHHHHCCCCCCC----CCCHHHHHHHHHcCCCCC--Ccc-------------cCcHHHHHHH
Confidence            345678889999999999999999888533    222222222222221110  111             1223477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLETRC  489 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~~~~  489 (495)
                      ..|...+|.+||+|.||++.|+.+..++
T Consensus       268 ~~cl~~dP~~RPs~~ei~~~L~~i~~~~  295 (311)
T d1r0pa_         268 LKCWHPKAEMRPSFSELVSRISAIFSTF  295 (311)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCHhHCcCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999997654

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.6e-09  Score=95.81  Aligned_cols=89  Identities=19%  Similarity=0.296  Sum_probs=58.5

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++|||||||++.||+||+.|....    .+. ..+.......   ...+.+..       ....+...+.++...
T Consensus       184 ~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~----~~~-~~~~~~~~~~---~~~p~~~~-------~~~~~~~~l~~li~~  248 (276)
T d1uwha_         184 NPYSFQSDVYAFGIVLYELMTGQLPYSNI----NNR-DQIIFMVGRG---YLSPDLSK-------VRSNCPKAMKRLMAE  248 (276)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTTTC----CCH-HHHHHHHHHT---SCCCCGGG-------SCTTCCHHHHHHHHH
T ss_pred             CCCCchhhhhhhHHHHHHHHHCCCCCCCC----ChH-HHHHHHHhcC---CCCCcchh-------ccccchHHHHHHHHH
Confidence            34577899999999999999999996432    111 1121111111   00111100       011233457788999


Q ss_pred             cCCCCccCchhHHHHHHHHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      |.+.+|.+||+|.|+++.|+.++.
T Consensus       249 cl~~dp~~RPt~~~il~~Le~l~~  272 (276)
T d1uwha_         249 CLKKKRDERPLFPQILASIELLAR  272 (276)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HcCCCHhHCcCHHHHHHHHHHHHH
Confidence            999999999999999999998874

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.1e-09  Score=94.13  Aligned_cols=90  Identities=20%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             hcCCCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFV  457 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~  457 (495)
                      |....+..+.++|||||||++.||+| |+.|....  ....+..++......   ++ .+              .+...+
T Consensus       170 E~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~--~~~~~~~~i~~~~~~---~~-~~--------------~~~~~~  229 (262)
T d1byga_         170 EALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGYKM---DA-PD--------------GCPPAV  229 (262)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTCCC---CC-CT--------------TCCHHH
T ss_pred             HHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCCC---CC-Cc--------------cCCHHH
Confidence            33334567889999999999999999 56554322  223444554322111   11 00              112346


Q ss_pred             HHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          458 FNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       458 ~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .++...|...+|.+||+|.|++++|+.|++.
T Consensus       230 ~~li~~cl~~dP~~Rps~~~l~~~L~~i~~~  260 (262)
T d1byga_         230 YEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  260 (262)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccCHhHCcCHHHHHHHHHHHHhC
Confidence            6888999999999999999999999998853

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.2e-08  Score=93.54  Aligned_cols=91  Identities=19%  Similarity=0.258  Sum_probs=61.1

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |.-..+..+.++|||||||++.||+||..|...    +.+-.+.++.........               ....+...+.
T Consensus       183 E~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~----~~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~  243 (283)
T d1mqba_         183 EAISYRKFTSASDVWSFGIVMWEVMTYGERPYW----ELSNHEVMKAINDGFRLP---------------TPMDCPSAIY  243 (283)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT----TCCHHHHHHHHHTTCCCC---------------CCTTCBHHHH
T ss_pred             HHHccCCCCCcccccccHHHHHHHHhCCCCccc----cCCHHHHHHHHhccCCCC---------------CchhhHHHHH
Confidence            333445677889999999999999998776422    233333333222211000               0112334578


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ++...|...+|.+||+|.||+++|+.+...
T Consensus       244 ~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         244 QLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence            899999999999999999999999987643

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=6.9e-09  Score=96.01  Aligned_cols=86  Identities=16%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.||+||..|..   . +.+-.+.+..........+               .+.+...+.++..
T Consensus       216 ~~~~t~ksDVwS~Gvvl~ell~~~~~p~---~-~~~~~e~~~~v~~~~~~~~---------------p~~~~~~~~~li~  276 (301)
T d1lufa_         216 YNRYTTESDVWAYGVVLWEIFSYGLQPY---Y-GMAHEEVIYYVRDGNILAC---------------PENCPLELYNLMR  276 (301)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTT---T-TSCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred             cCCCChhhhhccchhhHHHHHccCCCCC---C-CCCHHHHHHHHHcCCCCCC---------------CccchHHHHHHHH
Confidence            3456778999999999999999976421   1 2233333332222211110               1123345788999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||+|.||+++|++|++
T Consensus       277 ~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         277 LCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             HHcCCChhHCcCHHHHHHHHHHhcC
Confidence            9999999999999999999998863

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.4e-08  Score=91.21  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCC----------CCCHHHHHHHHhCCCcceeeeccccccccccccchhhH
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNG----------EMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQC  453 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~----------~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~  453 (495)
                      ...+.++|||||||++.|++||+.|.......          .... ...+......   -.++.+....     ...++
T Consensus       193 ~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~p~~~~~~-----~~~~~  263 (303)
T d1vjya_         193 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV-EEMRKVVCEQ---KLRPNIPNRW-----QSCEA  263 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH-HHHHHHHTTS---CCCCCCCGGG-----GGCHH
T ss_pred             CCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchH-HHHHHHHhcc---ccCCCCCccc-----CChHH
Confidence            34677899999999999999998765321111          1122 2222222111   1122221110     12245


Q ss_pred             HHHHHHHHhhcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          454 MSFVFNLAMECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       454 ~~~~~~~~~~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      ...+.+++..|.+.+|.+||+|.||+++|+++...
T Consensus       264 ~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         264 LRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            66688999999999999999999999999988753

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.9e-08  Score=91.44  Aligned_cols=85  Identities=21%  Similarity=0.268  Sum_probs=56.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|||||||++.||+||..|...    ..+....++.........  .+             ..+...+.++..
T Consensus       184 ~~~~~~~sDvwS~Gvvl~ellt~~~~~~~----~~~~~~~~~~i~~~~~~~--~p-------------~~~~~~l~~li~  244 (272)
T d1qpca_         184 YGTFTIKSDVWSFGILLTEIVTHGRIPYP----GMTNPEVIQNLERGYRMV--RP-------------DNCPEELYQLMR  244 (272)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTTCCSST----TCCHHHHHHHHHTTCCCC--CC-------------TTCCHHHHHHHH
T ss_pred             CCCCCchhhhhhhHHHHHHHHhCCCCCCC----CCCHHHHHHHHHhcCCCC--Cc-------------ccChHHHHHHHH
Confidence            34567889999999999999998777432    222222222221111000  01             112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|.+.+|.+||+|.||++.|+++-
T Consensus       245 ~cl~~~P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         245 LCWKERPEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHHhhhhh
Confidence            999999999999999999998753

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=4e-08  Score=90.50  Aligned_cols=86  Identities=15%  Similarity=0.324  Sum_probs=58.6

Q ss_pred             CCccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ..+..+.++|||||||++.||+| |+.|...     .+-.+.++....+....               ...++...+.++
T Consensus       206 ~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~-----~~~~~~~~~i~~~~~~~---------------~~~~~~~~l~~l  265 (299)
T d1jpaa_         206 QYRKFTSASDVWSYGIVMWEVMSYGERPYWD-----MTNQDVINAIEQDYRLP---------------PPMDCPSALHQL  265 (299)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHHHTTCCCC---------------CCTTCCHHHHHH
T ss_pred             hcCCCCcccccccchHHHHHHHhCCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CCccchHHHHHH
Confidence            34567778999999999999998 7888542     22222222221111000               011233447789


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      ...|.+.+|.+||+|.||++.|+++..
T Consensus       266 i~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         266 MLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             HHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            999999999999999999999988753

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.7e-08  Score=92.24  Aligned_cols=87  Identities=14%  Similarity=0.305  Sum_probs=61.4

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++||||||+++.||+||++|.    ..+.+..++...........+               ...+...+.++..
T Consensus       209 ~~~~~~~~Dv~S~G~il~El~t~~~~p----~~~~~~~~~~~~i~~~~~~~~---------------p~~~~~~l~~li~  269 (308)
T d1p4oa_         209 DGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLDK---------------PDNCPDMLFELMR  269 (308)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHTSCCT----TTTSCHHHHHHHHHTTCCCCC---------------CTTCCHHHHHHHH
T ss_pred             cCCCCcccccccHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHhCCCCCC---------------cccchHHHHHHHH
Confidence            345667899999999999999997552    134566666655444332111               0122345888999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||+|.+|+++|++...+
T Consensus       270 ~cl~~~P~~RPs~~~il~~L~~~~~~  295 (308)
T d1p4oa_         270 MCWQYNPKMRPSFLEIISSIKEEMEP  295 (308)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred             HHcCCChhHCcCHHHHHHHHHHhcCC
Confidence            99999999999999999999876443

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.8e-08  Score=90.64  Aligned_cols=86  Identities=13%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++||||||+++.||+|+..|..........+.+.++...+...     +             +.+...+.++..
T Consensus       221 ~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~-----~-------------~~~~~~l~~Li~  282 (311)
T d1t46a_         221 NCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLS-----P-------------EHAPAEMYDIMK  282 (311)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCC-----C-------------TTSCHHHHHHHH
T ss_pred             CCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCC-----c-------------ccccHHHHHHHH
Confidence            4556788999999999999999766643322222223344443222110     0             011233778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|.+.+|.+||+|.|++++|+++-
T Consensus       283 ~cl~~dP~~RPs~~~il~~L~~~i  306 (311)
T d1t46a_         283 TCWDADPLKRPTFKQIVQLIEKQI  306 (311)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHHHHHHhh
Confidence            999999999999999999998753

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.5e-08  Score=89.42  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             hcCCCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHH
Q 011044          379 EYGREGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVF  458 (495)
Q Consensus       379 ~~~~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~  458 (495)
                      |....++.+.++|||||||++.|++||..|...    +......+..........     .          ...+...+.
T Consensus       184 E~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~----~~~~~~~~~~i~~~~~~~-----~----------~~~~~~~l~  244 (285)
T d1fmka3         184 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYP----GMVNREVLDQVERGYRMP-----C----------PPECPESLH  244 (285)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST----TCCHHHHHHHHHTTCCCC-----C----------CTTSCHHHH
T ss_pred             HHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC----CCCHHHHHHHHHhcCCCC-----C----------CcccCHHHH
Confidence            444456677899999999999999998777432    222233332222111000     0          112233477


Q ss_pred             HHHhhcCCCCccCchhHHHHHHHHHHH
Q 011044          459 NLAMECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       459 ~~~~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      +++..|.+.+|.+||+|.+|+++|+.+
T Consensus       245 ~li~~cl~~dP~~Rps~~~i~~~L~~~  271 (285)
T d1fmka3         245 DLMCQCWRKEPEERPTFEYLQAFLEDY  271 (285)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             HHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence            889999999999999999999988764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-07  Score=88.02  Aligned_cols=86  Identities=17%  Similarity=0.294  Sum_probs=57.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|||||||++.||++|..|.   | .+.+..+..+.......     +..          ...+...+.++..
T Consensus       200 ~~~~~~~sDvwSfGvil~ell~~~~~p---~-~~~~~~~~~~~i~~~~~-----~~~----------~~~~~~~~~~li~  260 (309)
T d1fvra_         200 YSVYTTNSDVWSYGVLLWEIVSLGGTP---Y-CGMTCAELYEKLPQGYR-----LEK----------PLNCDDEVYDLMR  260 (309)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTSCCT---T-TTCCHHHHHHHGGGTCC-----CCC----------CTTBCHHHHHHHH
T ss_pred             cCCCCccceeehhHHHHHHHHhcCCCC---C-CCCCHHHHHHHHHhcCC-----CCC----------CccCCHHHHHHHH
Confidence            356678899999999999999987652   2 13344444333222111     101          0112234677889


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||+|.||++.|+.+..
T Consensus       261 ~cl~~dP~~RPs~~eil~~L~~i~~  285 (309)
T d1fvra_         261 QCWREKPYERPSFAQILVSLNRMLE  285 (309)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHHHHHHHHh
Confidence            9999999999999999999988753

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.5e-08  Score=89.21  Aligned_cols=87  Identities=14%  Similarity=0.260  Sum_probs=55.6

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|||||||++.||+||..|..   .+. +....+...+..+.    .+.+          .+.+...+.++..
T Consensus       210 ~~~~~~~sDiwS~Gvil~ellt~~~~p~---~~~-~~~~~~~~~~~~~~----~~~~----------~~~~~~~l~~li~  271 (299)
T d1ywna1         210 DRVYTIQSDVWSFGVLLWEIFSLGASPY---PGV-KIDEEFCRRLKEGT----RMRA----------PDYTTPEMYQTML  271 (299)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSS---TTC-CCSHHHHHHHHHTC----CCCC----------CTTCCHHHHHHHH
T ss_pred             cCCCCcccceeehHHHHHHHHhCCCCCC---CCC-CHHHHHHHHHhcCC----CCCC----------CccCCHHHHHHHH
Confidence            3456778999999999999999865421   111 11122222221110    0000          0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||+|.|+++.|+.+..
T Consensus       272 ~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         272 DCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998753

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.4e-08  Score=87.97  Aligned_cols=84  Identities=14%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.|++| |+.|....-  ...+...++   .+....     +          ...+...+.++.
T Consensus       186 ~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~--~~~~~~~i~---~~~~~~-----~----------p~~~~~~l~~li  245 (285)
T d1u59a_         186 FRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIE---QGKRME-----C----------PPECPPELYALM  245 (285)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHH---TTCCCC-----C----------CTTCCHHHHHHH
T ss_pred             CCCCCccchhhcchHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCCCC-----C----------CCcCCHHHHHHH
Confidence            4556788999999999999998 899964321  112222222   111111     0          112233477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..|.+.+|.+||+|.+|++.|+.+-
T Consensus       246 ~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         246 SDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             HHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            9999999999999999999987654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1e-07  Score=86.42  Aligned_cols=84  Identities=18%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|||||||++.||+| |+.|..     +.+..+-+......+..    +..          ...+...+.++.
T Consensus       188 ~~~~~~~~Di~S~Gvil~emlt~G~~Pf~-----~~~~~~~~~~i~~~~~~----~~~----------~~~~~~~l~~li  248 (273)
T d1u46a_         188 TRTFSHASDTWMFGVTLWEMFTYGQEPWI-----GLNGSQILHKIDKEGER----LPR----------PEDCPQDIYNVM  248 (273)
T ss_dssp             HCEEEHHHHHHHHHHHHHHHHTTSCCTTT-----TCCHHHHHHHHHTSCCC----CCC----------CTTCCHHHHHHH
T ss_pred             CCCCCcchhhhhhHHHHHHHHhCCCCCCC-----CcCHHHHHHHHHhCCCC----CCC----------cccccHHHHHHH
Confidence            4456778999999999999998 788843     22333333333222210    000          011223477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|...+|.+||+|.||++.|+++
T Consensus       249 ~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         249 VQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHHHHhc
Confidence            999999999999999999988875

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1e-07  Score=87.17  Aligned_cols=85  Identities=20%  Similarity=0.235  Sum_probs=57.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      .+..+.++|||||||++.||+||+.|..    ++.+.....+.........     .          ...+...+.++..
T Consensus       190 ~~~~~~k~DiwS~Gv~l~ell~~~~p~~----~~~~~~~~~~~i~~~~~~~-----~----------~~~~~~~l~~li~  250 (287)
T d1opja_         190 YNKFSIKSDVWAFGVLLWEIATYGMSPY----PGIDLSQVYELLEKDYRME-----R----------PEGCPEKVYELMR  250 (287)
T ss_dssp             HCCCSHHHHHHHHHHHHHHHHTTSCCSS----TTCCHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCCCchhhhhhHHHHHHHHHhCCCCCC----CcchHHHHHHHHhcCCCCC-----C----------CccchHHHHHHHH
Confidence            3456778999999999999999887742    2333333222221111000     0          0112334778999


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      .|.+.+|.+||+|.||++.|+.+.
T Consensus       251 ~cl~~dP~~Rps~~ei~~~L~~~~  274 (287)
T d1opja_         251 ACWQWNPSDRPSFAEIHQAFETMF  274 (287)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HHcCCCHhHCcCHHHHHHHHHHHH
Confidence            999999999999999999998763

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.1e-07  Score=88.38  Aligned_cols=84  Identities=17%  Similarity=0.307  Sum_probs=57.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.||+| |+.|.+..-  ...+...++......                  ..+.+...+.++.
T Consensus       187 ~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~--~~~~~~~i~~~~~~~------------------~p~~~~~~~~~li  246 (317)
T d1xkka_         187 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEKGERLP------------------QPPICTIDVYMIM  246 (317)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--GGGHHHHHHHTCCCC------------------CCTTBCHHHHHHH
T ss_pred             cCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHcCCCCC------------------CCcccCHHHHHHH
Confidence            3456788999999999999999 677754321  122333333221100                  0112334477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..|...+|.+||+|.|+++.+..+.
T Consensus       247 ~~cl~~dP~~RPs~~eil~~l~~~~  271 (317)
T d1xkka_         247 VKCWMIDADSRPKFRELIIEFSKMA  271 (317)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHhCCCChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999999988775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.6e-08  Score=79.57  Aligned_cols=65  Identities=25%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             cCCCCCCEEEccCCCCCCCC--ChhhhCcccccEEEecCCcCCCcCchhhhcCCCCceeeCCCCcCC
Q 011044          173 GNLTKLTRLNLRQNKLQGEI--PEELGNLAELEMLWLQNNSLTGTIPSSIFSLSSLLNLDLSLNNFT  237 (495)
Q Consensus       173 ~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  237 (495)
                      ..+++|++|++++|.++..-  +..+..+++|+.|++++|.++...+-......+|+.+++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34556666666666655321  233445555555555555555322212222334555555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.3e-07  Score=78.45  Aligned_cols=41  Identities=32%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             hcCCCCceeeCCCCcCCCCC--CcccccccccceeeccCcccc
Q 011044          221 FSLSSLLNLDLSLNNFTGII--PSSIGNLSSLQKLYLSDNQLS  261 (495)
Q Consensus       221 ~~l~~L~~L~Ls~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~  261 (495)
                      ..+++|++|+|++|+++...  +..+..+++|+.|++++|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            34555555666655555432  122334455555555555554

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-07  Score=85.43  Aligned_cols=83  Identities=17%  Similarity=0.219  Sum_probs=55.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.|++| |+.|...     .+-.+..+.........     .          ...+...+.++.
T Consensus       184 ~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~-----~~~~~~~~~i~~~~~~~-----~----------p~~~~~~~~~li  243 (277)
T d1xbba_         184 YYKFSSKSDVWSFGVLMWEAFSYGQKPYRG-----MKGSEVTAMLEKGERMG-----C----------PAGCPREMYDLM  243 (277)
T ss_dssp             HCEEEHHHHHHHHHHHHHHHHTTTCCSSTT-----CCHHHHHHHHHTTCCCC-----C----------CTTCCHHHHHHH
T ss_pred             CCCCCchhhhccchhhhhHHhhCCCCCCCC-----CCHHHHHHHHHcCCCCC-----C----------CcccCHHHHHHH
Confidence            3456788999999999999998 8888542     22222222111111110     0          012233477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKL  485 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i  485 (495)
                      ..|.+.+|.+||+|.+|++.|+..
T Consensus       244 ~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         244 NLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             HHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHcCCCHhHCcCHHHHHHHhhCH
Confidence            999999999999999999888764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3e-07  Score=83.42  Aligned_cols=84  Identities=15%  Similarity=0.318  Sum_probs=57.1

Q ss_pred             ccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          384 GRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      +..+.++|||||||++.||+| |+.|.....  ...+...+.....   ..     +          ...+...+.++..
T Consensus       184 ~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~--~~~~~~~i~~~~~---~~-----~----------~~~~~~~~~~li~  243 (273)
T d1mp8a_         184 RRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIENGER---LP-----M----------PPNCPPTLYSLMT  243 (273)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCC---CC-----C----------CTTCCHHHHHHHH
T ss_pred             CCCCCccccccchHHHHHHHhcCCCCCCCCC--HHHHHHHHHcCCC---CC-----C----------CCCCCHHHHHHHH
Confidence            445668999999999999998 777865322  2233333322111   00     0          0112234778899


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLET  487 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~  487 (495)
                      .|.+.+|.+||++.||++.|+.|..
T Consensus       244 ~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         244 KCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999988753

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.8e-07  Score=83.96  Aligned_cols=82  Identities=18%  Similarity=0.306  Sum_probs=55.2

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      ....+.++|||||||++.||+| |+.|...     .+-.+..+.......  ...+.             .+...+.++.
T Consensus       175 ~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~-----~~~~~~~~~i~~~~~--~~~p~-------------~~~~~l~~li  234 (258)
T d1k2pa_         175 YSKFSSKSDIWAFGVLMWEIYSLGKMPYER-----FTNSETAEHIAQGLR--LYRPH-------------LASEKVYTIM  234 (258)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----SCHHHHHHHHHTTCC--CCCCT-------------TCCHHHHHHH
T ss_pred             CCCCCcceeecccchhhHhHHhcCCCCCCC-----CCHHHHHHHHHhCCC--CCCcc-------------cccHHHHHHH
Confidence            3456778999999999999998 7888532     233333322222111  01111             1223477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQK  484 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~  484 (495)
                      ..|...+|.+||++.++++.|.+
T Consensus       235 ~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         235 YSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             HHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             HHHccCCHhHCcCHHHHHHHhhC
Confidence            99999999999999999998864

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.4e-07  Score=85.22  Aligned_cols=84  Identities=18%  Similarity=0.400  Sum_probs=55.2

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.||+| |+.|..     +.+...-++.......... ..              .+...+.++.
T Consensus       211 ~~~y~~k~DiwS~Gvvl~ell~~g~~p~~-----~~~~~~~~~~i~~~~~~~~-p~--------------~~~~~l~~li  270 (299)
T d1fgka_         211 DRIYTHQSDVWSFGVLLWEIFTLGGSPYP-----GVPVEELFKLLKEGHRMDK-PS--------------NCTNELYMMM  270 (299)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSST-----TCCHHHHHHHHHTTCCCCC-CS--------------SCCHHHHHHH
T ss_pred             CCCCCchhhhHHhHHHHHHhccCCCCCCC-----CCCHHHHHHHHHcCCCCCC-Cc--------------cchHHHHHHH
Confidence            3556788999999999999998 466632     2222221111111111100 00              1123477899


Q ss_pred             hhcCCCCccCchhHHHHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ..|.+.+|.+|||+.||+++|++|-
T Consensus       271 ~~cl~~dP~~Rps~~eil~~L~~i~  295 (299)
T d1fgka_         271 RDCWHAVPSQRPTFKQLVEDLDRIV  295 (299)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHccCCHhHCcCHHHHHHHHHHHh
Confidence            9999999999999999999998873

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.1e-07  Score=86.72  Aligned_cols=82  Identities=13%  Similarity=0.254  Sum_probs=54.6

Q ss_pred             CccccCCCcceeehhhhhhccc-CCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFT-AKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~t-gk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .+..+.++|||||||++.||+| |+.|....-. ...+.+.++...+..        .          ...+...+.++.
T Consensus       240 ~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~-~~~~~~~~~~~~~~~--------~----------p~~~~~~l~~li  300 (325)
T d1rjba_         240 EGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGFKMD--------Q----------PFYATEEIYIIM  300 (325)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTCCCC--------C----------CTTCCHHHHHHH
T ss_pred             CCCCCcceeccchhHHHHHHHhCCCCCCCCCCH-HHHHHHHHhcCCCCC--------C----------CCcCCHHHHHHH
Confidence            3456778999999999999998 7888542111 112233333221100        0          011223477889


Q ss_pred             hhcCCCCccCchhHHHHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQDSQ  483 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~~l~  483 (495)
                      ..|.+.+|.+||||.|+++.|.
T Consensus       301 ~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         301 QSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHHHh
Confidence            9999999999999999999885

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.5e-06  Score=78.43  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      +.+.++|||||||++.||+||+.|..    +..+.....+.......    .+.+          ...+...+.++...|
T Consensus       188 ~~~~~~DIwSlGvilyel~~g~~Pf~----~~~~~~~~~~~i~~~~~----~~~~----------~~~~~~~~~~li~~~  249 (270)
T d1t4ha_         188 KYDESVDVYAFGMCMLEMATSEYPYS----ECQNAAQIYRRVTSGVK----PASF----------DKVAIPEVKEIIEGC  249 (270)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTT----TCSSHHHHHHHHTTTCC----CGGG----------GGCCCHHHHHHHHHH
T ss_pred             CCCCcCchhhHHHHHHHHHHCCCCCC----CcccHHHHHHHHHcCCC----Cccc----------CccCCHHHHHHHHHH
Confidence            46778999999999999999999953    33333333332222110    0111          001122366788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.|+++
T Consensus       250 l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         250 IRQNKDERYSIKDLLN  265 (270)
T ss_dssp             SCSSGGGSCCHHHHHT
T ss_pred             ccCCHhHCcCHHHHhC
Confidence            9999999999999864

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=2.1e-06  Score=77.80  Aligned_cols=87  Identities=14%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|..    +. +-.............   .+...         .......+.++..
T Consensus       188 ~~~~~~~~DiwSlGvilyelltG~~Pf~----~~-~~~~~~~~~~~~~~~---~~~~~---------~~~~s~~l~~li~  250 (277)
T d1o6ya_         188 GDSVDARSDVYSLGCVLYEVLTGEPPFT----GD-SPVSVAYQHVREDPI---PPSAR---------HEGLSADLDAVVL  250 (277)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCSCC----CS-SHHHHHHHHHHCCCC---CGGGT---------SSSCCHHHHHHHH
T ss_pred             CCCCCcceecccchHHHHHHHhCCCCCC----Cc-CHHHHHHHHHhcCCC---CCchh---------ccCCCHHHHHHHH
Confidence            3456778999999999999999999954    22 222333332222110   00000         0011223667888


Q ss_pred             hcCCCCccCch-hHHHHHHHHHHHH
Q 011044          463 ECTVESPIRES-TQRKLLQDSQKLE  486 (495)
Q Consensus       463 ~C~~~~p~~Rp-~m~~v~~~l~~i~  486 (495)
                      .|.+.+|.+|| ++.++.+.|.+++
T Consensus       251 ~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         251 KALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             HHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             HHccCCHhHCHhHHHHHHHHHHHHh
Confidence            99999999999 8999998888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=7.7e-06  Score=67.70  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=17.8

Q ss_pred             cCCCCCCCEEEcccCcCcccc----CccccCCCCCCEEEccCCCCC
Q 011044          148 LSSCKQLRELSLSSNYFSGTI----PKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      +...+.|++|++++|.+....    ...+...+.|++|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            334444555555555443211    112223344555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=1.1e-05  Score=66.82  Aligned_cols=37  Identities=11%  Similarity=0.148  Sum_probs=16.9

Q ss_pred             CCCCCEEEcccccCCcc----CCcccCCCCCCCEEEcccCc
Q 011044          127 MSNLESLFLKYNMFHGK----IPSTLSSCKQLRELSLSSNY  163 (495)
Q Consensus       127 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~  163 (495)
                      .+.|++|++++|.++..    +...+...+.|++|++++|.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34455555555544431    12233444455555555443

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.1e-06  Score=76.17  Aligned_cols=78  Identities=8%  Similarity=0.128  Sum_probs=50.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|||||||++.||+||+.|...     .+-.+............+ ..              .+...+.++..
T Consensus       188 ~~~~~~~~DIwSlGvilyel~tg~~Pf~~-----~~~~~~~~~i~~~~~~~~-~~--------------~~s~~l~~li~  247 (269)
T d2java1         188 RMSYNEKSDIWSLGCLLYELCALMPPFTA-----FSQKELAGKIREGKFRRI-PY--------------RYSDELNEIIT  247 (269)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHTCCCCC-CT--------------TSCHHHHHHHH
T ss_pred             CCCCChHHHHHhhCHHHHHHhhCCCCCCC-----CCHHHHHHHHHcCCCCCC-Cc--------------ccCHHHHHHHH
Confidence            34456789999999999999999999542     222222222221111110 00              11123667788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|.+.+|.+||++.|+++
T Consensus       248 ~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         248 RMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHTCSSGGGSCCHHHHHT
T ss_pred             HHcCCChhHCcCHHHHHh
Confidence            999999999999999863

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=2.7e-06  Score=77.94  Aligned_cols=89  Identities=15%  Similarity=0.006  Sum_probs=55.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCC--CCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHH
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGE--MTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNL  460 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~--~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~  460 (495)
                      ....+.++|||||||++.|++||+.|........  ....++.....+.....     +          ...+...+.++
T Consensus       187 ~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~p~~~~~l  251 (299)
T d1ckia_         187 GIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEV-----L----------CKGYPSEFATY  251 (299)
T ss_dssp             TBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHH-----H----------TTTSCHHHHHH
T ss_pred             CCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhH-----h----------ccCCCHHHHHH
Confidence            3446778999999999999999999975432221  11112222211111000     0          01122346778


Q ss_pred             HhhcCCCCccCchhHHHHHHHHHHHH
Q 011044          461 AMECTVESPIRESTQRKLLQDSQKLE  486 (495)
Q Consensus       461 ~~~C~~~~p~~Rp~m~~v~~~l~~i~  486 (495)
                      ...|...+|.+||++.++.+.|+.+.
T Consensus       252 i~~cl~~~p~~RP~~~~i~~~l~~~~  277 (299)
T d1ckia_         252 LNFCRSLRFDDKPDYSYLRQLFRNLF  277 (299)
T ss_dssp             HHHHHHSCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHccCChhHCcCHHHHHHHHHHHH
Confidence            88999999999999999988887753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9e-06  Score=72.75  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|.+.     .+.....+........  . +.             .....+.++..
T Consensus       178 ~~~~~~~~DiwSlGvilyell~G~~Pf~~-----~~~~~~~~~i~~~~~~--~-p~-------------~~s~~~~~li~  236 (263)
T d2j4za1         178 GRMHDEKVDLWSLGVLCYEFLVGKPPFEA-----NTYQETYKRISRVEFT--F-PD-------------FVTEGARDLIS  236 (263)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHTTCCC--C-CT-------------TSCHHHHHHHH
T ss_pred             CCCCCchhhhhhHhHHHHHHhcCCCCCCC-----CCHHHHHHHHHcCCCC--C-Cc-------------cCCHHHHHHHH
Confidence            34456789999999999999999999532     2333333322222110  0 00             01122556788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|.+.+|.+||++.|+++
T Consensus       237 ~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         237 RLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             HHTCSSGGGSCCHHHHHT
T ss_pred             HHccCCHhHCcCHHHHHc
Confidence            999999999999999864

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=3.5e-06  Score=75.88  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=46.3

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+||++.||+||+.|.+...........+..   ......       .        ....-....++...|.+
T Consensus       184 ~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~---~~~~~~-------~--------~~~~s~~~~~li~~~L~  245 (271)
T d1nvra_         184 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE---KKTYLN-------P--------WKKIDSAPLALLHKILV  245 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHT---TCTTST-------T--------GGGSCHHHHHHHHHHSC
T ss_pred             CCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhc---CCCCCC-------c--------cccCCHHHHHHHHHHcC
Confidence            45689999999999999999997542221111111111   100000       0        00011224567789999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+||++.|+++
T Consensus       246 ~dP~~R~t~~eil~  259 (271)
T d1nvra_         246 ENPSARITIPDIKK  259 (271)
T ss_dssp             SSTTTSCCHHHHTT
T ss_pred             CChhHCcCHHHHhc
Confidence            99999999999853

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=8.6e-06  Score=74.74  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      +..+.++|||||||++.||++|+.|...    .... +.+............+.              .+...+.++...
T Consensus       189 ~~y~~~~DiwSlGvilyel~~g~~Pf~~----~~~~-~~~~~i~~~~~~~~~~~--------------~~s~~~~~li~~  249 (309)
T d1u5ra_         189 GQYDGKVDVWSLGITCIELAERKPPLFN----MNAM-SALYHIAQNESPALQSG--------------HWSEYFRNFVDS  249 (309)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTTT----SCHH-HHHHHHHHSCCCCCSCT--------------TSCHHHHHHHHH
T ss_pred             CCcCchhhhhhHHHHHHHHHHCCCCCCC----CCHH-HHHHHHHhCCCCCCCCC--------------CCCHHHHHHHHH
Confidence            3456789999999999999999999532    2221 22222221111111010              111236678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |.+.+|.+||++.|+++
T Consensus       250 ~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         250 CLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             HTCSSGGGSCCHHHHTT
T ss_pred             HCcCChhHCcCHHHHHh
Confidence            99999999999999854

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.1e-05  Score=73.23  Aligned_cols=78  Identities=18%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++|||||||++.||+||+.|....-  ...+   +........     +.+..        .......+.++...|
T Consensus       191 ~y~~k~DiwSlGvilyemltg~~Pf~~~~--~~~~---~~~i~~~~~-----~~~~~--------~~~~s~~~~~li~~~  252 (288)
T d2jfla1         191 PYDYKADVWSLGITLIEMAEIEPPHHELN--PMRV---LLKIAKSEP-----PTLAQ--------PSRWSSNFKDFLKKC  252 (288)
T ss_dssp             STTTHHHHHHHHHHHHHHHHSSCTTTTSC--GGGH---HHHHHHSCC-----CCCSS--------GGGSCHHHHHHHHHH
T ss_pred             CCChhhhHHHHHHHHHHHhhCCCCCCCCC--HHHH---HHHHHcCCC-----CCCCc--------cccCCHHHHHHHHHH
Confidence            34678999999999999999999954321  1111   111111110     00100        001122356778899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+||++.|+++
T Consensus       253 L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         253 LEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             SCSSTTTSCCHHHHTT
T ss_pred             ccCChhHCcCHHHHhc
Confidence            9999999999999854

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=1.5e-05  Score=72.49  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=50.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||+||++.||+||+.|...    ... .+.+..........+-.+             ...-..+.++.
T Consensus       189 ~~~~~~~~~DiwSlGvilyemltG~~Pf~~----~~~-~~~~~~~~~~~~~~~~~~-------------~~~s~~~~~li  250 (293)
T d1yhwa1         189 TRKAYGPKVDIWSLGIMAIEMIEGEPPYLN----ENP-LRALYLIATNGTPELQNP-------------EKLSAIFRDFL  250 (293)
T ss_dssp             SSSCBCTHHHHHHHHHHHHHHHHSSCTTTT----SCH-HHHHHHHHHHCSCCCSSG-------------GGSCHHHHHHH
T ss_pred             cCCCCCchhceehHhHHHHHHhhCCCCCCC----CCH-HHHHHHHHhCCCCCCCCc-------------ccCCHHHHHHH
Confidence            344567789999999999999999999532    211 122222211111010000             01112356788


Q ss_pred             hhcCCCCccCchhHHHHHH
Q 011044          462 MECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..|...+|.+||++.|+++
T Consensus       251 ~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         251 NRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             HHHTCSSTTTSCCHHHHTT
T ss_pred             HHHccCChhHCcCHHHHhc
Confidence            8999999999999999853

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=2.2e-05  Score=71.87  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=50.3

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.||+||+.|...    . +...-.......... . +...          .......+.++...
T Consensus       184 ~~~~~~~DiwSlGvilyell~g~~Pf~~----~-~~~~~~~~i~~~~~~-~-~~~~----------~~~~s~~~~~li~~  246 (307)
T d1a06a_         184 KPYSKAVDCWSIGVIAYILLCGYPPFYD----E-NDAKLFEQILKAEYE-F-DSPY----------WDDISDSAKDFIRH  246 (307)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCC----S-SHHHHHHHHHTTCCC-C-CTTT----------TTTSCHHHHHHHHH
T ss_pred             CCCCcHHHhhhhhHHHHHHHhCCCCCCC----C-CHHHHHHHHhccCCC-C-CCcc----------ccCCCHHHHHHHHH
Confidence            3456789999999999999999999542    2 111222222221110 0 0000          00112236678999


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       247 ~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         247 LMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             HSCSSGGGSCCHHHHHH
T ss_pred             HccCCHhHCcCHHHHhc
Confidence            99999999999999965

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=1.7e-05  Score=73.57  Aligned_cols=83  Identities=10%  Similarity=0.152  Sum_probs=48.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.||+||+.|....-  .......+...........-.+           .....-..+.++...|
T Consensus       189 ~y~~~~DiwSlGvily~lltg~~Pf~~~~--~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~s~~~~~li~~~  255 (335)
T d2ozaa1         189 KYDKSCDMWSLGVIMYILLCGYPPFYSNH--GLAISPGMKTRIRMGQYEFPNP-----------EWSEVSEEVKMLIRNL  255 (335)
T ss_dssp             GGSHHHHHHHHHHHHHHHTTSSCSCEETT--CC--------CCCSCSSSCCTT-----------HHHHSCHHHHHHHHHH
T ss_pred             CCCHHHHHHhhchhHHHHhhCCCCCCCCC--HHHHHHHHHHHHhcCCCCCCCc-----------ccccCCHHHHHHHHHH
Confidence            45678999999999999999999964321  1121122211111110000000           0111223366788999


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       256 L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         256 LKTEPTQRMTITEFMN  271 (335)
T ss_dssp             SCSSTTTSCCHHHHHH
T ss_pred             ccCChhHCcCHHHHHc
Confidence            9999999999999864

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.2e-05  Score=71.36  Aligned_cols=81  Identities=11%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|...     .+-.+..+........ . ....          .......+.++..
T Consensus       190 ~~~~~~~~DiwSlGvilyell~g~~Pf~~-----~~~~~~~~~i~~~~~~-~-~~~~----------~~~~s~~~~~li~  252 (293)
T d1jksa_         190 YEPLGLEADMWSIGVITYILLSGASPFLG-----DTKQETLANVSAVNYE-F-EDEY----------FSNTSALAKDFIR  252 (293)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHTTCCC-C-CHHH----------HTTSCHHHHHHHH
T ss_pred             CCCCCCcccchhhhHHHHHHHcCCCCCCC-----CCHHHHHHHHHhcCCC-C-Cchh----------cCCCCHHHHHHHH
Confidence            34567889999999999999999999542     2222322222221110 0 0000          0011223557788


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       253 ~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         253 RLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             TTSCSSGGGSCCHHHHHH
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999864

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.32  E-value=2.9e-05  Score=69.92  Aligned_cols=80  Identities=13%  Similarity=0.127  Sum_probs=50.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|...    . +-..-.+........ ...+.           ....-..+.++..
T Consensus       189 ~~~~~~~~DiwslGvilyeml~g~~Pf~~----~-~~~~~~~~i~~~~~~-~~~~~-----------~~~~s~~~~~li~  251 (277)
T d1phka_         189 HPGYGKEVDMWSTGVIMYTLLAGSPPFWH----R-KQMLMLRMIMSGNYQ-FGSPE-----------WDDYSDTVKDLVS  251 (277)
T ss_dssp             SCCBCTHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHHTCCC-CCTTT-----------GGGSCHHHHHHHH
T ss_pred             CCCCCchheEcccchhhhhhccCCCCCCC----C-CHHHHHHHHHhCCCC-CCCcc-----------cccCCHHHHHHHH
Confidence            34457789999999999999999999542    2 211111222221110 00000           0011223678899


Q ss_pred             hcCCCCccCchhHHHHH
Q 011044          463 ECTVESPIRESTQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~  479 (495)
                      .|...+|.+||++.||+
T Consensus       252 ~~L~~~p~~R~s~~eil  268 (277)
T d1phka_         252 RFLVVQPQKRYTAEEAL  268 (277)
T ss_dssp             HHCCSSGGGSCCHHHHT
T ss_pred             HHccCChhHCcCHHHHH
Confidence            99999999999999984

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=5.9e-05  Score=62.07  Aligned_cols=41  Identities=12%  Similarity=0.202  Sum_probs=18.1

Q ss_pred             CCCCCCCEEEcccCcCcccc----CccccCCCCCCEEEccCCCCC
Q 011044          149 SSCKQLRELSLSSNYFSGTI----PKEIGNLTKLTRLNLRQNKLQ  189 (495)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~  189 (495)
                      ...++|++|++++|.++...    ...+...+.++.+++++|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34455555555555444221    112233345555555555443

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=6.9e-05  Score=69.02  Aligned_cols=28  Identities=21%  Similarity=0.438  Sum_probs=24.2

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++||||+||++.||+||+.|..
T Consensus       177 ~~~y~~~~DiWSlGvil~ell~G~~Pf~  204 (322)
T d1s9ja_         177 GTHYSVQSDIWSMGLSLVEMAVGRYPIP  204 (322)
T ss_dssp             CSCCCTTHHHHHHHHHHHHHHHSSCCSS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence            3456778999999999999999999964

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.21  E-value=5.9e-05  Score=62.08  Aligned_cols=43  Identities=7%  Similarity=-0.091  Sum_probs=23.1

Q ss_pred             hccCCCCCCEEeCcC-CcCCcc----CCccccCCCCCcEEEccCCccc
Q 011044           74 ELANLSSLQALDLSF-NWFYGS----IPSSIFNMSSLLSIYFNNNTLF  116 (495)
Q Consensus        74 ~l~~l~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  116 (495)
                      ...+.+.|++|+|++ +.++..    +...+...++|++|++++|.+.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            344567777777765 334322    2233445556666666666553

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=4.8e-05  Score=69.50  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCc
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ....+.++||||+||++.||+||+.|..
T Consensus       189 ~~~y~~~~DiwSlG~il~ell~g~~pf~  216 (305)
T d1blxa_         189 QSSYATPVDLWSVGCIFAEMFRRKPLFR  216 (305)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCCChhehhhchHHHHHHHHHCCCCCC
Confidence            3456778999999999999999999954

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=5.1e-05  Score=68.80  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=49.9

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHh---CCCc-------ceeeecc---ccccccccccchhh
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLL---SISV-------MEVVDAN---LLSWKDKHFMTKEQ  452 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~---~~~~-------~~v~d~~---l~~~~~~~~~~~~~  452 (495)
                      .+.++||||+||++.||++|+.|..    .+.+..++.+...   ....       ....+..   ..............
T Consensus       179 ~~~~~DiwSlG~il~ell~g~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
T d1unla_         179 YSTSIDMWSAGCIFAELANAGRPLF----PGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPK  254 (292)
T ss_dssp             CCTHHHHHHHHHHHHHHTTTSCCSC----CCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTT
T ss_pred             CCchhhccccchHHHHHhhCCCCCC----CCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhcccc
Confidence            4678999999999999999999942    2334444444322   1000       0000000   00000000000001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .-....++...|.+.+|.+|||+.|+++
T Consensus       255 ~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         255 LNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1123556778899999999999999853

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=97.07  E-value=9.9e-05  Score=68.67  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=49.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.||+||+.|..    +. +....++........  .+.....          ..-..+.++...|
T Consensus       201 ~~~~~~DiwSlGvilyell~G~~Pf~----~~-~~~~~~~~i~~~~~~--~~~~~~~----------~~s~~~~~li~~~  263 (350)
T d1koaa2         201 PVGYYTDMWSVGVLSYILLSGLSPFG----GE-NDDETLRNVKSCDWN--MDDSAFS----------GISEDGKDFIRKL  263 (350)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHSSCSSC----CS-SHHHHHHHHHHTCCC--SCCGGGG----------GCCHHHHHHHHHH
T ss_pred             CCChhHhhhhhhHHHHHHHhCCCCCC----CC-CHHHHHHHHHhCCCC--CCccccc----------CCCHHHHHHHHHH
Confidence            34567999999999999999999953    22 333333332221100  0000000          1112256778899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      ...+|.+||++.|+++
T Consensus       264 L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         264 LLADPNTRMTIHQALE  279 (350)
T ss_dssp             CCSSGGGSCCHHHHHH
T ss_pred             ccCChhHCcCHHHHhc
Confidence            9999999999999865

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=97.07  E-value=7e-05  Score=69.80  Aligned_cols=81  Identities=14%  Similarity=0.151  Sum_probs=50.5

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|..    +. +..............  .......          .....+.++..
T Consensus       202 ~~~~~~~~DiwSlGvilyelltG~~Pf~----~~-~~~~~~~~i~~~~~~--~~~~~~~----------~~s~~~~~li~  264 (352)
T d1koba_         202 REPVGFYTDMWAIGVLGYVLLSGLSPFA----GE-DDLETLQNVKRCDWE--FDEDAFS----------SVSPEAKDFIK  264 (352)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHSCCSSC----CS-SHHHHHHHHHHCCCC--CCSSTTT----------TSCHHHHHHHH
T ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCC----CC-CHHHHHHHHHhCCCC--CCccccc----------CCCHHHHHHHH
Confidence            3446778999999999999999999953    22 222222222111100  0000100          11123567899


Q ss_pred             hcCCCCccCchhHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~  480 (495)
                      .|...+|.+||++.|+++
T Consensus       265 ~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         265 NLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TTSCSSGGGSCCHHHHHT
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999864

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.07  E-value=4.3e-05  Score=69.40  Aligned_cols=93  Identities=11%  Similarity=-0.046  Sum_probs=55.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++|+|||||++.||+||+.|+...-..  ......+........ ..-..+.          ..+...+.++..
T Consensus       187 ~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~--~~~~~~~~i~~~~~~-~~~~~l~----------~~~p~~l~~ii~  253 (293)
T d1csna_         187 GREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA--TNKQKYERIGEKKQS-TPLRELC----------AGFPEEFYKYMH  253 (293)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC--CHHHHHHHHHHHHHH-SCHHHHT----------TTSCHHHHHHHH
T ss_pred             CCCCChHHHHHHhhHHHHHHHhCCCcCCCccch--hHHHHHHHHHhccCC-CChHHhc----------CCCCHHHHHHHH
Confidence            345677899999999999999999997532211  221211111100000 0000000          012233566677


Q ss_pred             hcCCCCccCchhHHHHHHHHHHHHHH
Q 011044          463 ECTVESPIRESTQRKLLQDSQKLETR  488 (495)
Q Consensus       463 ~C~~~~p~~Rp~m~~v~~~l~~i~~~  488 (495)
                      .|.+.+|.+||+++.+.+.++++..+
T Consensus       254 ~~~~~~~~~rP~y~~l~~~l~~~~~~  279 (293)
T d1csna_         254 YARNLAFDATPDYDYLQGLFSKVLER  279 (293)
T ss_dssp             HHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCcccCcCHHHHHHHHHHHHHH
Confidence            88899999999999998888876544

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=96.91  E-value=0.00013  Score=65.80  Aligned_cols=94  Identities=17%  Similarity=0.092  Sum_probs=48.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCC---cceee-----eccccccccc-cccchhhHHH
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSIS---VMEVV-----DANLLSWKDK-HFMTKEQCMS  455 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~---~~~v~-----d~~l~~~~~~-~~~~~~~~~~  455 (495)
                      ..+.++|+||+||++.||++|+.|....-.. ..+.+-.+......   ...+.     +......... ........-.
T Consensus       177 ~~~~~~DiwslGv~l~el~~G~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  255 (286)
T d1ob3a_         177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA-DQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDE  255 (286)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCH
T ss_pred             CCCcceeehhcCcHHHHHHHCCCCCCCCCHH-HHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCH
Confidence            3567899999999999999999995431100 00111111111100   00000     0000000000 0000001112


Q ss_pred             HHHHHHhhcCCCCccCchhHHHHH
Q 011044          456 FVFNLAMECTVESPIRESTQRKLL  479 (495)
Q Consensus       456 ~~~~~~~~C~~~~p~~Rp~m~~v~  479 (495)
                      .+..+...|...+|.+|||+.|++
T Consensus       256 ~~~dli~~~L~~dP~~R~s~~ell  279 (286)
T d1ob3a_         256 SGIDLLSKMLKLDPNQRITAKQAL  279 (286)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             HHHHHHHHHccCChhHCcCHHHHh
Confidence            356788999999999999999985

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=9.1e-05  Score=66.90  Aligned_cols=75  Identities=8%  Similarity=0.147  Sum_probs=48.5

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMEC  464 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C  464 (495)
                      ..+.++||||+||++.||+||+.|...    . +-..-.+....... .+ ...+              -..+.++...|
T Consensus       186 ~~~~~~DiwSlGvilyell~g~~Pf~~----~-~~~~~~~~i~~~~~-~~-p~~~--------------s~~~~~li~~~  244 (288)
T d1uu3a_         186 SACKSSDLWALGCIIYQLVAGLPPFRA----G-NEYLIFQKIIKLEY-DF-PEKF--------------FPKARDLVEKL  244 (288)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCC----S-SHHHHHHHHHTTCC-CC-CTTC--------------CHHHHHHHHTT
T ss_pred             CCCcccceehhhHHHHHHhhCCCCCCC----c-CHHHHHHHHHcCCC-CC-CccC--------------CHHHHHHHHHH
Confidence            456689999999999999999999542    2 22222222222211 00 0111              12256788899


Q ss_pred             CCCCccCchhHHHHHH
Q 011044          465 TVESPIRESTQRKLLQ  480 (495)
Q Consensus       465 ~~~~p~~Rp~m~~v~~  480 (495)
                      .+.+|.+|||+.|+..
T Consensus       245 L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         245 LVLDATKRLGCEEMEG  260 (288)
T ss_dssp             SCSSGGGSTTSGGGTC
T ss_pred             ccCCHhHCcCHHHHcC
Confidence            9999999999999744

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=4.7e-05  Score=68.36  Aligned_cols=67  Identities=12%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             cCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcCC
Q 011044          387 STNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECTV  466 (495)
Q Consensus       387 ~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~  466 (495)
                      +.++||||+||++.||+||+.|...    ..   +-.+....      ..+.+              -..+.++...|..
T Consensus       188 ~~~~DiwSlGvilyell~g~~Pf~~----~~---~i~~~~~~------~~~~~--------------s~~~~~li~~~L~  240 (273)
T d1xwsa_         188 GRSAAVWSLGILLYDMVCGDIPFEH----DE---EIIRGQVF------FRQRV--------------SSECQHLIRWCLA  240 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCCS----HH---HHHHCCCC------CSSCC--------------CHHHHHHHHHHTC
T ss_pred             CcccccccceeeehhHhhCCCCCCC----ch---HHhhcccC------CCCCC--------------CHHHHHHHHHHcc
Confidence            4568999999999999999999542    11   11110000      01111              1225677889999


Q ss_pred             CCccCchhHHHHHH
Q 011044          467 ESPIRESTQRKLLQ  480 (495)
Q Consensus       467 ~~p~~Rp~m~~v~~  480 (495)
                      .+|.+|||+.|+++
T Consensus       241 ~dp~~R~s~~eil~  254 (273)
T d1xwsa_         241 LRPSDRPTFEEIQN  254 (273)
T ss_dssp             SSGGGSCCHHHHHT
T ss_pred             CCHhHCcCHHHHhc
Confidence            99999999999864

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00022  Score=64.72  Aligned_cols=92  Identities=15%  Similarity=0.019  Sum_probs=49.0

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHH---Hh-CCC-c-cee-eeccccccccccccc-----hhh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVND---LL-SIS-V-MEV-VDANLLSWKDKHFMT-----KEQ  452 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~---~~-~~~-~-~~v-~d~~l~~~~~~~~~~-----~~~  452 (495)
                      ..+.++|+||+||++.||++|+.|.+.    ......+.+.   .. +.. . ..+ ..+............     ...
T Consensus       179 ~~~~~~DiwSlGvily~m~~G~~Pf~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
T d1gz8a_         179 YYSTAVDIWSLGCIFAEMVTRRALFPG----DSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPP  254 (298)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCC----SSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTT
T ss_pred             CCCccccccccchhhhHHhhCCCCCCC----CCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccC
Confidence            346789999999999999999999642    2122222211   11 000 0 000 000000000000000     001


Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      .-....++...|...+|.+|||+.|+++
T Consensus       255 ~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         255 LDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            1123566788999999999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00016  Score=66.40  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.||++|+.|...    . +-...++........  .+....          ...-..+.++...
T Consensus       178 ~~~~~~~DiWSlGvily~ll~G~~Pf~~----~-~~~~~~~~i~~~~~~--~~~~~~----------~~~s~~~~~li~~  240 (321)
T d1tkia_         178 DVVSTATDMWSLGTLVYVLLSGINPFLA----E-TNQQIIENIMNAEYT--FDEEAF----------KEISIEAMDFVDR  240 (321)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHSSCTTCC----S-SHHHHHHHHHHTCCC--CCHHHH----------TTSCHHHHHHHHT
T ss_pred             CCCCchhhcccHHHHHHHHHhCCCCCCC----C-CHHHHHHHHHhCCCC--CChhhc----------cCCCHHHHHHHHH
Confidence            3456789999999999999999999542    2 222233322221100  000000          0111225678889


Q ss_pred             cCCCCccCchhHHHHHH
Q 011044          464 CTVESPIRESTQRKLLQ  480 (495)
Q Consensus       464 C~~~~p~~Rp~m~~v~~  480 (495)
                      |...+|.+||++.|+++
T Consensus       241 ~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         241 LLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TSCSSGGGSCCHHHHHH
T ss_pred             HccCChhHCcCHHHHhc
Confidence            99999999999999965

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00011  Score=67.51  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+||++.||+||+.|.+
T Consensus       199 ~~~k~DiwSlGvil~el~~g~~pf~  223 (318)
T d3blha1         199 YGPPIDLWGAGCIMAEMWTRSPIMQ  223 (318)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCcHHHcccCCceeeeHhhCCCCCC
Confidence            4678999999999999999999964

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.71  E-value=0.00033  Score=65.43  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=44.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||+||++.||+||+.|....-  ........+....... .. ...              .-..+..+...|.
T Consensus       183 ~~~~~DiwSlGvilyemltG~~Pf~~~~--~~~~~~~~~~~~~~~~-~~-~~~--------------~s~~~~~li~~~L  244 (364)
T d1omwa3         183 YDSSADWFSLGCMLFKLLRGHSPFRQHK--TKDKHEIDRMTLTMAV-EL-PDS--------------FSPELRSLLEGLL  244 (364)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCSSC--SSCHHHHHHHSSSCCC-CC-CSS--------------SCHHHHHHHHHHT
T ss_pred             CCcccchhHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhcccCCC-CC-CCC--------------CCHHHHHHHHHHc
Confidence            5678999999999999999999965321  1222222222111110 00 000              1122567788999


Q ss_pred             CCCccCchhH
Q 011044          466 VESPIRESTQ  475 (495)
Q Consensus       466 ~~~p~~Rp~m  475 (495)
                      ..+|.+||++
T Consensus       245 ~~dP~~R~t~  254 (364)
T d1omwa3         245 QRDVNRRLGC  254 (364)
T ss_dssp             CSSTTTSTTT
T ss_pred             ccCHHHhCCC
Confidence            9999999995

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00013  Score=66.25  Aligned_cols=93  Identities=11%  Similarity=0.029  Sum_probs=48.4

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCc-ceeeecccccccc---ccc-cch----hhHHHH
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISV-MEVVDANLLSWKD---KHF-MTK----EQCMSF  456 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~-~~v~d~~l~~~~~---~~~-~~~----~~~~~~  456 (495)
                      .+.++||||+||++.||+||+.|....  ...+...-+.+...... ...-+..-.....   ... ...    ...-..
T Consensus       178 ~~~~~DiwSlGvil~el~~g~~pf~~~--~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (299)
T d1ua2a_         178 YGVGVDMWAVGCILAELLLRVPFLPGD--SDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDD  255 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHH
T ss_pred             CChhhhhhhcchHHHHHHhCcCCCCCC--CHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHH
Confidence            466899999999999999999885321  11111111222111100 0000000000000   000 000    011123


Q ss_pred             HHHHHhhcCCCCccCchhHHHHHH
Q 011044          457 VFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       457 ~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      +.++...|...+|.+|||+.|+++
T Consensus       256 ~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         256 LLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             HHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHccCChhhCcCHHHHhC
Confidence            667889999999999999999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00041  Score=63.54  Aligned_cols=77  Identities=10%  Similarity=0.141  Sum_probs=47.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhhcC
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAMECT  465 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  465 (495)
                      .+.++||||+||++.||+||+.|.......+ ......+.......      .+.          .++-..+.++...|.
T Consensus       209 ~~~ksDIWSlG~iLyelltG~~PF~~~~~~~-~~~~i~~~~~~~~~------~~~----------~~~s~~~~~li~~~l  271 (322)
T d1vzoa_         209 HDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQAEISRRILKSEP------PYP----------QEMSALAKDLIQRLL  271 (322)
T ss_dssp             -CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHHHHHHHHHHCCC------CCC----------TTSCHHHHHHHHHHT
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcccCCC------CCc----------ccCCHHHHHHHHHHc
Confidence            4567999999999999999999965432221 22222222221110      000          011233667788999


Q ss_pred             CCCccCchh-----HHHHH
Q 011044          466 VESPIREST-----QRKLL  479 (495)
Q Consensus       466 ~~~p~~Rp~-----m~~v~  479 (495)
                      ..+|.+||+     +.|+.
T Consensus       272 ~~dP~~R~s~~~~t~~eil  290 (322)
T d1vzoa_         272 MKDPKKRLGCGPRDADEIK  290 (322)
T ss_dssp             CSSGGGSTTSSTTTHHHHH
T ss_pred             ccCHHHcCCCCcccHHHHH
Confidence            999999996     56664

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00026  Score=65.99  Aligned_cols=28  Identities=21%  Similarity=0.138  Sum_probs=23.9

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCC
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPT  409 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~  409 (495)
                      .....+.++|+||+||++.|+++|+.|.
T Consensus       191 ~~~~~~~~~DiwSlG~~l~ell~g~~pF  218 (355)
T d2b1pa1         191 LGMGYKENVDIWSVGCIMGEMVRHKILF  218 (355)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             cCCCCCCCcccccccchHHHHhhCCCCC
Confidence            3445677899999999999999999884

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00064  Score=62.94  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++||||+||++.||++|+.|..
T Consensus       196 ~~~~~DiwSlGvil~ell~g~~pf~  220 (346)
T d1cm8a_         196 YTQTVDIWSVGCIMAEMITGKTLFK  220 (346)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCccchhhcchHHHHHHHHCcCCCC
Confidence            4678999999999999999999964

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00043  Score=64.28  Aligned_cols=91  Identities=9%  Similarity=0.011  Sum_probs=48.7

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCccccCCCCCHH-----------HHHHHHhCCCcceeeecccccccc-c-cccchh
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLR-----------RWVNDLLSISVMEVVDANLLSWKD-K-HFMTKE  451 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~-----------~wv~~~~~~~~~~v~d~~l~~~~~-~-~~~~~~  451 (495)
                      ..+.++||||+||++.||++|+.|....-. ...+.           .++....+..    .+..+..... . ......
T Consensus       199 ~~~~~~DIwSlG~il~el~~g~~pf~~~~~-~~~l~~i~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  273 (350)
T d1q5ka_         199 DYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREMNPNY----TEFKFPQIKAHPWTKVFRP  273 (350)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHTSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCC-------CCCCCCCCCCCGGGTSCT
T ss_pred             CCCcceeecccceEEEehhhCCCCCCCCCH-HHHHHHHHHHhCCChHHhhhhhccch----hhccccccccCchhhhccc
Confidence            356789999999999999999998542110 00111           1111111110    0111100000 0 000001


Q ss_pred             hHHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          452 QCMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       452 ~~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ..-....++...|...+|.+|||+.|+++
T Consensus       274 ~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  302 (350)
T d1q5ka_         274 RTPPEAIALCSRLLEYTPTARLTPLEACA  302 (350)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11223567788999999999999999864

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00072  Score=62.94  Aligned_cols=28  Identities=7%  Similarity=0.020  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhcCCCCccCchhHHHHHH
Q 011044          453 CMSFVFNLAMECTVESPIRESTQRKLLQ  480 (495)
Q Consensus       453 ~~~~~~~~~~~C~~~~p~~Rp~m~~v~~  480 (495)
                      ....+.++...|...+|.+|||+.|+++
T Consensus       300 ~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         300 EAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             cCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            4455778999999999999999999853

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0009  Score=61.00  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             ccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHhh
Q 011044          384 GRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAME  463 (495)
Q Consensus       384 ~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~~  463 (495)
                      ...+.++||||+||++.||+||+.|...     .+.....+........  ..+.+              ...+..+...
T Consensus       176 ~~y~~~~DiwSlGvilyemltG~~Pf~~-----~~~~~~~~~i~~~~~~--~p~~~--------------s~~~~~li~~  234 (316)
T d1fota_         176 KPYNKSIDWWSFGILIYEMLAGYTPFYD-----SNTMKTYEKILNAELR--FPPFF--------------NEDVKDLLSR  234 (316)
T ss_dssp             CCBCTTHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHHCCCC--CCTTS--------------CHHHHHHHHH
T ss_pred             CCCCchhhccccchhHHHHHhCCCCCCC-----cCHHHHHHHHHcCCCC--CCCCC--------------CHHHHHHHHH
Confidence            3456789999999999999999999542     2322333332221110  00101              1225677888


Q ss_pred             cCCCCccCch-----hHHHHH
Q 011044          464 CTVESPIRES-----TQRKLL  479 (495)
Q Consensus       464 C~~~~p~~Rp-----~m~~v~  479 (495)
                      |...+|.+|+     ++.++.
T Consensus       235 ~L~~dp~~R~~~~r~t~~~il  255 (316)
T d1fota_         235 LITRDLSQRLGNLQNGTEDVK  255 (316)
T ss_dssp             HTCSCTTTCTTSSTTTTHHHH
T ss_pred             HhhhCHHhccccchhhHHHHH
Confidence            9999999996     777774

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00064  Score=62.14  Aligned_cols=77  Identities=13%  Similarity=0.177  Sum_probs=48.3

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++||||+||++.||+||+.|..    +. +-..-.+......      +.+-.          ..-..+..+.
T Consensus       176 ~~~~~~~~~DiwSlGvilyemltG~~PF~----~~-~~~~~~~~i~~~~------~~~p~----------~~s~~~~dli  234 (320)
T d1xjda_         176 LGQKYNHSVDWWSFGVLLYEMLIGQSPFH----GQ-DEEELFHSIRMDN------PFYPR----------WLEKEAKDLL  234 (320)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSC----CS-SHHHHHHHHHHCC------CCCCT----------TSCHHHHHHH
T ss_pred             cCCCCCchhhhhhhhHHHHHHHhCCCCCC----CC-CHHHHHHHHHcCC------CCCCc----------cCCHHHHHHH
Confidence            34456778999999999999999999953    22 2222222211111      11100          0112256778


Q ss_pred             hhcCCCCccCchhHH-HHH
Q 011044          462 MECTVESPIRESTQR-KLL  479 (495)
Q Consensus       462 ~~C~~~~p~~Rp~m~-~v~  479 (495)
                      ..|...+|.+||++. ++.
T Consensus       235 ~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         235 VKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             HHHSCSSGGGSBTTBSCGG
T ss_pred             HHhcccCCCCCcCHHHHHH
Confidence            899999999999985 663

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.00099  Score=61.56  Aligned_cols=25  Identities=16%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+||++.||++|+.|.+
T Consensus       190 ~~~~~DiwSlG~il~eml~g~~pf~  214 (345)
T d1pmea_         190 YTKSIDIWSVGCILAEMLSNRPIFP  214 (345)
T ss_dssp             CSTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCchhhhhccCceehHHhhCCCCCC
Confidence            3567899999999999999999964

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.001  Score=61.53  Aligned_cols=76  Identities=13%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             CccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHHh
Q 011044          383 EGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLAM  462 (495)
Q Consensus       383 ~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~~  462 (495)
                      ....+.++||||+||++.||+||+.|..    +. +.....+........      ...          .....+.++..
T Consensus       212 ~~~~~~~~DiwSlGvilyemltG~~Pf~----~~-~~~~~~~~i~~~~~~------~p~----------~~s~~~~~li~  270 (350)
T d1rdqe_         212 SKGYNKAVDWWALGVLIYEMAAGYPPFF----AD-QPIQIYEKIVSGKVR------FPS----------HFSSDLKDLLR  270 (350)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSC----CS-SHHHHHHHHHHCCCC------CCT----------TCCHHHHHHHH
T ss_pred             CCCCCccccccchhHHHHHHHhCCCCCC----Cc-CHHHHHHHHhcCCCC------CCc----------cCCHHHHHHHH
Confidence            3345678999999999999999999953    22 322333322221110      000          01123667888


Q ss_pred             hcCCCCccCch-----hHHHHH
Q 011044          463 ECTVESPIRES-----TQRKLL  479 (495)
Q Consensus       463 ~C~~~~p~~Rp-----~m~~v~  479 (495)
                      .|...+|.+|+     ++.|+.
T Consensus       271 ~~L~~dP~kR~~~~r~t~~ell  292 (350)
T d1rdqe_         271 NLLQVDLTKRFGNLKNGVNDIK  292 (350)
T ss_dssp             HHSCSCTTTCTTSSTTTTHHHH
T ss_pred             HHhhhCHHhccccccccHHHHH
Confidence            99999999994     778875

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0026  Score=58.32  Aligned_cols=72  Identities=11%  Similarity=0.119  Sum_probs=44.7

Q ss_pred             CCccccCCCcceeehhhhhhcccCCCCCccccCCCCCHHHHHHHHhCCCcceeeeccccccccccccchhhHHHHHHHHH
Q 011044          382 REGRVSTNGDIYNFGIMIMETFTAKKPTDEIFNGEMTLRRWVNDLLSISVMEVVDANLLSWKDKHFMTKEQCMSFVFNLA  461 (495)
Q Consensus       382 ~~~~~~~~~dvysfgilllE~~tgk~p~~~~~~~~~~l~~wv~~~~~~~~~~v~d~~l~~~~~~~~~~~~~~~~~~~~~~  461 (495)
                      .....+.++|+||+||++.||+||+.|...     .+.....+.......      .+-..          .-.....+.
T Consensus       178 ~~~~y~~~~DiwSlGvilyeml~G~~pf~~-----~~~~~~~~~i~~~~~------~~p~~----------~s~~~~dli  236 (337)
T d1o6la_         178 EDNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHERLFELILMEEI------RFPRT----------LSPEAKSLL  236 (337)
T ss_dssp             SSSCBCTTHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CCCTT----------SCHHHHHHH
T ss_pred             cCCCCChhhcccchhhHHHHHHHCCCCCCC-----cCHHHHHHHHhcCCC------CCCcc----------CCHHHHHHH
Confidence            344567789999999999999999988532     222233332222211      00000          011245677


Q ss_pred             hhcCCCCccCchh
Q 011044          462 MECTVESPIREST  474 (495)
Q Consensus       462 ~~C~~~~p~~Rp~  474 (495)
                      ..|.+.+|.+||+
T Consensus       237 ~~~L~~dP~~R~~  249 (337)
T d1o6la_         237 AGLLKKDPKQRLG  249 (337)
T ss_dssp             HHHTCSSTTTSTT
T ss_pred             HhhccCCchhhcc
Confidence            8899999999996

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.00077  Score=62.39  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             cccCCCcceeehhhhhhcccCCCCCc
Q 011044          385 RVSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       385 ~~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      ..+.++|+||+||++.||++|+.|..
T Consensus       195 ~~~~~~DiwSlGv~l~~ll~g~~pF~  220 (348)
T d2gfsa1         195 HYNQTVDIWSVGCIMAELLTGRTLFP  220 (348)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cCCcccchhhhhHHHHHHHhCCCCCC
Confidence            35678999999999999999999853

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=94.08  E-value=0.012  Score=53.42  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             ccCCCcceeehhhhhhcccCCCCCc
Q 011044          386 VSTNGDIYNFGIMIMETFTAKKPTD  410 (495)
Q Consensus       386 ~~~~~dvysfgilllE~~tgk~p~~  410 (495)
                      .+.++|+||+|+++.|+++|+.|..
T Consensus       207 ~~~~~DiwslG~~l~e~~~g~~pf~  231 (328)
T d3bqca1         207 YDYSLDMWSLGCMLASMIFRKEPFF  231 (328)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             CCcccchhhhhhhhHHhccCCCCCC
Confidence            4678899999999999999999853