Citrus Sinensis ID: 011054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
Protein Sequence
MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccEEEEEccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEccEEEEEcccccEEHHHHHccccccccccccccHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHcccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccHcccccccccEEEccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEEcccccccccccEEEEEEEccccccEEEEEcccccccccccccccEEEEEEEEEcccEEEEEEcccccccccHHHHHHHHHHccccEEEEEEEEEcccccccccEEEEEEccEEEEEccccEEEEEEEEccccEEccccccccHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccccccc
Coil and Loop (DISEMBL)
mtrvsrdfgntmqkdavpavsadvvfassrfpnykigannqvvdgkddpkvlSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRgrvagrnkDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMlhqpskvmDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLsdsyeldgsealgsylrikpcsnngpelskcsiqwyrvpseggkrelisgatksvyapepfdvGRILQAEITYNGQqitltttgavdpapglgSYVEALVRKHDVEFHVVVTqmngvdhpsesihVLHVGKMRIKLCKGKMTIAKEYYSTsmqlcgvrgggNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCnimlagpedrsplgs
Flexible Loop (DISEMBL)
mtrvsrdfgntmqkdavpavSADVVFASSrfpnykigannqvvdgkddPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALEslrgrvagrnkdDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEheqmsrasgkqdfEELMKEVQEARRIKMlhqpskvmdMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEeklsdsyeldGSEALGSYLRIKPCsnngpelskcSIQWYRVPSEGGKRELIsgatksvyapepFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQmngvdhpsesihvLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNImlagpedrsplgs
Low Complexity Region (SEG)
MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFekglaaaaklseeaklreaaslekHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLGS
Disordered region (IsUnstruct)
*******************VSADVVFASSRFPNYKIGANNQVV**************************************************************HVLLKKLRDAL**************VEEAIAMVEALAVQLTQRE**LI**********************************************************************************************ALRIQLAEKSKCSLLLRK***********************LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLA**********
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************LGSYLRIKP*******LSKCSIQWYRVPS**G**ELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAG*********
Disordered Region (DISEMBL)
*********NTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESA************************DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGP********
Disordered Region (DISPRO)
**************DAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNxxxxxxxxxxxxxxxxxxxxxEGELIQEKAEVKKLADFLKKASEDAKKLVDEExxxxxxxxxxxxxxxxxxxxxxxxxxxxSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
224103993	494	predicted protein [Populus trichocarpa]	1.0	1.0	0.870	0.0
255564494	494	transcription factor, putative [Ricinus	1.0	1.0	0.858	0.0
224059678	494	predicted protein [Populus trichocarpa]	1.0	1.0	0.866	0.0
225435953	496	PREDICTED: uncharacterized protein LOC10	1.0	0.995	0.836	0.0
296083935	529	unnamed protein product [Vitis vinifera]	1.0	0.933	0.836	0.0
356554191	494	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.827	0.0
255638080	494	unknown [Glycine max]	1.0	1.0	0.823	0.0
356501384	494	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.823	0.0
357493807	503	hypothetical protein MTR_5g088860 [Medic	1.0	0.982	0.807	0.0
297825901	496	hypothetical protein ARALYDRAFT_481549 [	0.997	0.993	0.817	0.0

>gi|224103993|ref|XP_002313274.1| predicted protein [Populus trichocarpa] gi|222849682|gb|EEE87229.1| predicted protein [Populus trichocarpa]

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/494 (87%), Positives = 462/494 (93%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDFG+TMQKDAVPAVSADV FASSRFPNYKIGANNQ+VD KD PKVLSMKEVVAR
Sbjct: 1   MTRVTRDFGDTMQKDAVPAVSADVAFASSRFPNYKIGANNQIVDAKDSPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LLEQQKRLSVRDLANKFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETALLLEQQKRLSVRDLANKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLT REGELIQEKAEVKKLA+FLK+ASEDAKKLVD E
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTHREGELIQEKAEVKKLANFLKQASEDAKKLVDGE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RA+ARAEIESARAAVQRVEE++QEHE+MSRASGKQD EELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAYARAEIESARAAVQRVEEAIQEHERMSRASGKQDLEELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHE+RALRIQLAEKSK SLLL+KELA S+R E+ +   +ELDG+EALGS LRI PCS+
Sbjct: 241 DMEHEIRALRIQLAEKSKRSLLLQKELARSRRAEQSIFQLFELDGTEALGSCLRINPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PELSKCSIQWYR+ S+GGK+ELISGATK VYAPEPFDVGR+LQAEI  +GQQ +L+TT
Sbjct: 301 NAPELSKCSIQWYRLSSDGGKKELISGATKPVYAPEPFDVGRVLQAEIISDGQQFSLSTT 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
             +DPA GLGSYVEALVRKHDVEF+V+VTQMNGVDHPSESIHVLHVGKMRIKL KGK T 
Sbjct: 361 CPIDPAAGLGSYVEALVRKHDVEFNVIVTQMNGVDHPSESIHVLHVGKMRIKLRKGKSTN 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKG+SFVLAFES RERNA IMLARR AFDCN
Sbjct: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGLSFVLAFESARERNAAIMLARRFAFDCN 480

Query: 481 IMLAGPEDRSPLGS 494
           IMLAGP+DR+ LGS
Sbjct: 481 IMLAGPDDRARLGS 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564494|ref|XP_002523243.1| transcription factor, putative [Ricinus communis] gi|223537539|gb|EEF39164.1| transcription factor, putative [Ricinus communis]

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/494 (85%), Positives = 463/494 (93%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR +RDFG+TM+KDAVPAVSADV+FASSRFPNY++GANNQ++D KDDPKV+SMKEVVAR
Sbjct: 1   MTRATRDFGDTMRKDAVPAVSADVIFASSRFPNYRLGANNQILDAKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LLEQQKRLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAMLLEQQKRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRV G+NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVK+LA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVVGKNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKRLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIESARAAVQRVEE+LQEHE++SRASGKQD EELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARAEIESARAAVQRVEEALQEHERVSRASGKQDLEELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALRIQLAEKSK SLLL+KELA S+R E+ +S SYEL+GSE LGSYL+I PC +
Sbjct: 241 DMEHELRALRIQLAEKSKRSLLLQKELARSRRGEQNISQSYELNGSETLGSYLQINPCCD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N P LSKCSIQWYRV SEGGKRELISGATKSVYAPEPFDVGR++Q EI  +GQQITLTT+
Sbjct: 301 NVPVLSKCSIQWYRVSSEGGKRELISGATKSVYAPEPFDVGRVVQVEIIADGQQITLTTS 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
           GA+DPA GLGSYVEALVRKHDVEF+VVVTQMNGVDH SESIHVLHVGKMR+KL KGK T+
Sbjct: 361 GAIDPAAGLGSYVEALVRKHDVEFNVVVTQMNGVDHKSESIHVLHVGKMRMKLRKGKTTV 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYST MQLCGVRGGGNAAAQA++WQ  KG+SFVLAFESERERNA IML RR AFDCN
Sbjct: 421 AKEYYSTLMQLCGVRGGGNAAAQAIYWQVNKGLSFVLAFESERERNAAIMLVRRFAFDCN 480

Query: 481 IMLAGPEDRSPLGS 494
           IML GP+DRS LG+
Sbjct: 481 IMLTGPDDRSHLGT 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059678|ref|XP_002299966.1| predicted protein [Populus trichocarpa] gi|222847224|gb|EEE84771.1| predicted protein [Populus trichocarpa]

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/494 (86%), Positives = 458/494 (92%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDFG+TMQKDAV AVSADV FASSRFPNYKIGA NQ++D KDDPKVLSMKEVVAR
Sbjct: 1   MTRVTRDFGDTMQKDAVLAVSADVAFASSRFPNYKIGATNQILDAKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LLEQQKRLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETALLLEQQKRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RA+ARAEIESARA VQRVEE+LQEHE+MSRA GKQD EELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAYARAEIESARATVQRVEEALQEHERMSRALGKQDLEELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR+QLAEKSKCSL L+KELA S+R  + +   +ELDGSEALGS LRI PCS 
Sbjct: 241 DMEHELRALRMQLAEKSKCSLQLQKELARSRRGGQSMFHLFELDGSEALGSCLRINPCSE 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PELS+CSIQW+R+ SE  K+ LISGATK VYAPEPFDVGR+LQAEI  +GQQ TLTTT
Sbjct: 301 NAPELSECSIQWFRLSSEDVKKALISGATKPVYAPEPFDVGRVLQAEIISDGQQFTLTTT 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
            A+DPA GLGSYVEALVRKHDVEF+VVVTQMNG+DH SESIHVLHVGKMR+KL KGK TI
Sbjct: 361 CAIDPAAGLGSYVEALVRKHDVEFNVVVTQMNGLDHTSESIHVLHVGKMRMKLRKGKSTI 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFES RERNA IMLARR AFDCN
Sbjct: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESARERNAAIMLARRFAFDCN 480

Query: 481 IMLAGPEDRSPLGS 494
           IMLAGP+DR+PLGS
Sbjct: 481 IMLAGPDDRAPLGS 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435953|ref|XP_002269709.1| PREDICTED: uncharacterized protein LOC100242766 [Vitis vinifera]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/496 (83%), Positives = 457/496 (92%), Gaps = 2/496 (0%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRVSRDF NTMQK+AVPAVSADV F SSRFPNYK+G  NQ+++ K+DPKVLSMKEVVAR
Sbjct: 1   MTRVSRDFSNTMQKEAVPAVSADVTFTSSRFPNYKLGPYNQIMEAKEDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLS+EA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSDEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVE+AIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEDAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           R+FARAEIE+AR AV+RVEE+L+E E+++RASGKQD +ELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RSFARAEIENAREAVRRVEEALEEQERIARASGKQDMDELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSK--RIEEKLSDSYELDGSEALGSYLRIKPC 298
           DMEHEL ALR+QLAEKSK SL L+KEL +SK  R EE +SD YELDG EALGS+L+I+ C
Sbjct: 241 DMEHELLALRLQLAEKSKHSLQLQKELLISKSRRGEENMSDMYELDGPEALGSFLQIQAC 300

Query: 299 SNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLT 358
           S+  P+LS CSIQWYRV SEGGKRELISGA KSVYAPEPFDVGR+LQA+I  +G QITL 
Sbjct: 301 SDKAPDLSHCSIQWYRVSSEGGKRELISGAIKSVYAPEPFDVGRVLQADIVLDGYQITLA 360

Query: 359 TTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKM 418
           T G +DPA GLGSYVEALVRKHD EF+VV+TQMNG DHPSESIHVLHVGKMRIKLCKGK 
Sbjct: 361 TAGPIDPAAGLGSYVEALVRKHDTEFNVVITQMNGADHPSESIHVLHVGKMRIKLCKGKA 420

Query: 419 TIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFD 478
           TIAKEYYSTSMQLCGVRGGGNAA QAL+WQAKKG+SFVLAFESER+RNA IMLARR AFD
Sbjct: 421 TIAKEYYSTSMQLCGVRGGGNAATQALYWQAKKGLSFVLAFESERDRNAAIMLARRFAFD 480

Query: 479 CNIMLAGPEDRSPLGS 494
           CNIMLAGP+DR+P G+
Sbjct: 481 CNIMLAGPDDRAPQGT 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083935|emb|CBI24323.3| unnamed protein product [Vitis vinifera]

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/496 (83%), Positives = 457/496 (92%), Gaps = 2/496 (0%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRVSRDF NTMQK+AVPAVSADV F SSRFPNYK+G  NQ+++ K+DPKVLSMKEVVAR
Sbjct: 34  MTRVSRDFSNTMQKEAVPAVSADVTFTSSRFPNYKLGPYNQIMEAKEDPKVLSMKEVVAR 93

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLS+EA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 94  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSDEARLREAASLEKHVLLKKLRDALESLK 153

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVE+AIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 154 GRVAGRNKDDVEDAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 213

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           R+FARAEIE+AR AV+RVEE+L+E E+++RASGKQD +ELMKEVQEARRIKMLHQPSKVM
Sbjct: 214 RSFARAEIENAREAVRRVEEALEEQERIARASGKQDMDELMKEVQEARRIKMLHQPSKVM 273

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSK--RIEEKLSDSYELDGSEALGSYLRIKPC 298
           DMEHEL ALR+QLAEKSK SL L+KEL +SK  R EE +SD YELDG EALGS+L+I+ C
Sbjct: 274 DMEHELLALRLQLAEKSKHSLQLQKELLISKSRRGEENMSDMYELDGPEALGSFLQIQAC 333

Query: 299 SNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLT 358
           S+  P+LS CSIQWYRV SEGGKRELISGA KSVYAPEPFDVGR+LQA+I  +G QITL 
Sbjct: 334 SDKAPDLSHCSIQWYRVSSEGGKRELISGAIKSVYAPEPFDVGRVLQADIVLDGYQITLA 393

Query: 359 TTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKM 418
           T G +DPA GLGSYVEALVRKHD EF+VV+TQMNG DHPSESIHVLHVGKMRIKLCKGK 
Sbjct: 394 TAGPIDPAAGLGSYVEALVRKHDTEFNVVITQMNGADHPSESIHVLHVGKMRIKLCKGKA 453

Query: 419 TIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFD 478
           TIAKEYYSTSMQLCGVRGGGNAA QAL+WQAKKG+SFVLAFESER+RNA IMLARR AFD
Sbjct: 454 TIAKEYYSTSMQLCGVRGGGNAATQALYWQAKKGLSFVLAFESERDRNAAIMLARRFAFD 513

Query: 479 CNIMLAGPEDRSPLGS 494
           CNIMLAGP+DR+P G+
Sbjct: 514 CNIMLAGPDDRAPQGT 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554191|ref|XP_003545432.1| PREDICTED: uncharacterized protein LOC100800672 [Glycine max]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/494 (82%), Positives = 456/494 (92%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR++RDFG+TMQ+DAVPAVS+DVVFASSRFPNY+IGANNQ+++ KDDPKVLSMKEVVAR
Sbjct: 1   MTRLTRDFGDTMQRDAVPAVSSDVVFASSRFPNYRIGANNQIIETKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQ  RLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAQLLEQHNRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIA+VEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAIVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIE ARAAVQRVEE+LQEHE+MS+ASGKQD E+LM+EVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARAEIEDARAAVQRVEEALQEHERMSQASGKQDLEQLMREVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR QLAEK++  L L+KEL  +K+  E +   YEL+G+E LGSYL+I+PCS+
Sbjct: 241 DMEHELRALRSQLAEKTRQYLRLQKELTRTKKGGENVPHLYELEGNETLGSYLQIQPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PE+SKCSIQWYRV S+G K+ELISGATKSVYAPEPFDVGRILQ +I    + +TL+T 
Sbjct: 301 NAPEVSKCSIQWYRVSSDGAKKELISGATKSVYAPEPFDVGRILQVDIISESEHVTLSTA 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
           G +DPA GLG+YVEALVRKHD EF+VVVTQMNG  HP+ESIHVLHVGKMRIKLCKGK TI
Sbjct: 361 GPIDPAAGLGTYVEALVRKHDTEFNVVVTQMNGSHHPTESIHVLHVGKMRIKLCKGKTTI 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYS+SMQLCGVRGGGNAAAQALFWQ K+G SFVLAFESERERNA IMLARR AFDCN
Sbjct: 421 AKEYYSSSMQLCGVRGGGNAAAQALFWQPKQGHSFVLAFESERERNAAIMLARRFAFDCN 480

Query: 481 IMLAGPEDRSPLGS 494
           IMLAGP+DR+PLG+
Sbjct: 481 IMLAGPDDRAPLGT 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638080|gb|ACU19354.1| unknown [Glycine max]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/494 (82%), Positives = 455/494 (92%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR++RDFG+TMQ+DAVPAVS+DVVFASSRFPNY+IGANNQ+++ KDDPKVLSMKEVVAR
Sbjct: 1   MTRLTRDFGDTMQRDAVPAVSSDVVFASSRFPNYRIGANNQIIETKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQ  RLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAQLLEQLNRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIA+VEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAIVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIE ARAAVQRVEE+LQEHE++S+ASGKQD E+LM+EVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARAEIEDARAAVQRVEEALQEHERISQASGKQDQEQLMREVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR QLAEK++  L L+KEL  +K+  E +   YEL+G+E LGSYL+I+PCS+
Sbjct: 241 DMEHELRALRSQLAEKTRQYLRLQKELTRTKKGGENVPHLYELEGNETLGSYLQIQPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PE+SKCSIQWYRV S+G K+ELISGATKSVYAPEPFDVGRILQ +I    + +TL+T 
Sbjct: 301 NAPEVSKCSIQWYRVSSDGAKKELISGATKSVYAPEPFDVGRILQVDIISESEHVTLSTA 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
           G +DPA GLG+YVEALVRKHD EF+VVVTQMNG  HP+ESIHVLHVGKMRIKLCKGK TI
Sbjct: 361 GPIDPAAGLGTYVEALVRKHDTEFNVVVTQMNGSHHPTESIHVLHVGKMRIKLCKGKTTI 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYS+SMQLCGVRGGGNAAAQALFWQ K+G  FVLAFESERERNA IMLARR AFDCN
Sbjct: 421 AKEYYSSSMQLCGVRGGGNAAAQALFWQPKQGHFFVLAFESERERNAAIMLARRFAFDCN 480

Query: 481 IMLAGPEDRSPLGS 494
           IMLAGP+DR+PLG+
Sbjct: 481 IMLAGPDDRAPLGT 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501384|ref|XP_003519505.1| PREDICTED: uncharacterized protein LOC100800736 [Glycine max]

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/494 (82%), Positives = 454/494 (91%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDFG+TMQ++AVPAVS+DVVFAS+RFPNYKIGANNQ+++ KDDPKVLSMKEVVAR
Sbjct: 1   MTRVTRDFGDTMQREAVPAVSSDVVFASARFPNYKIGANNQIMETKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQ  RLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAQLLEQHNRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIE ARAAVQRVEE+LQEHE+MS+ASGKQD E+LMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARAEIEDARAAVQRVEEALQEHERMSQASGKQDMEQLMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR QLAEK++  L L+KEL  +K+  E +   YEL+G+E LGSYL+I+PCS+
Sbjct: 241 DMEHELRALRAQLAEKTRQYLRLQKELTRTKKGGENVPHLYELEGNETLGSYLQIQPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PE+S+C+IQWY V S+G K+ELISGATKSVYAPEPFDVGRILQ +I    + ITL+T 
Sbjct: 301 NAPEVSRCAIQWYCVSSDGAKKELISGATKSVYAPEPFDVGRILQVDIISENEHITLSTA 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
           G +DPA GLG+YVEAL+RKHD EF+VVVTQMNG  HP+ESIHVLHVGKMRIKLCKGK TI
Sbjct: 361 GPIDPAAGLGTYVEALMRKHDTEFNVVVTQMNGSHHPTESIHVLHVGKMRIKLCKGKTTI 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYS+SMQLCGVRGGGNAAAQALFWQ  +G SFVLAFESERERNA IMLARR AFDCN
Sbjct: 421 AKEYYSSSMQLCGVRGGGNAAAQALFWQPMQGHSFVLAFESERERNAAIMLARRFAFDCN 480

Query: 481 IMLAGPEDRSPLGS 494
           IMLAGP+DR+PLG+
Sbjct: 481 IMLAGPDDRAPLGT 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493807|ref|XP_003617192.1| hypothetical protein MTR_5g088860 [Medicago truncatula] gi|355518527|gb|AET00151.1| hypothetical protein MTR_5g088860 [Medicago truncatula]

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/494 (80%), Positives = 455/494 (92%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDFG+TMQK+AVPAVS+DVVFA+SRFPNY+IGANNQ+++ KDDPKVLSMKEV+AR
Sbjct: 10  MTRVTRDFGDTMQKEAVPAVSSDVVFATSRFPNYRIGANNQIMEAKDDPKVLSMKEVIAR 69

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LL+Q  RLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRD+LESL+
Sbjct: 70  ETAMLLDQHNRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDSLESLK 129

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVE+AIAMVEALAVQLTQREGEL+QEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 130 GRVAGRNKDDVEDAIAMVEALAVQLTQREGELLQEKAEVKKLANFLKQASEDAKKLVDEE 189

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEI++AR+AVQRVEESLQEHE+MS+ASGKQD E+LMKEVQEARRIKMLHQPSKVM
Sbjct: 190 RAFARAEIDNARSAVQRVEESLQEHERMSQASGKQDVEQLMKEVQEARRIKMLHQPSKVM 249

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHEL+ALR QLAEK++  L L+KE+  +K+ EE +   YEL+G+E LGSYL+I+PCS+
Sbjct: 250 DMEHELQALRAQLAEKTRHYLRLQKEITRTKKGEENVPHLYELEGNETLGSYLQIQPCSD 309

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N P+LS CSIQW RV S+G K+ELISGA KSVYAPEPFDVGRIL  ++    Q I L+TT
Sbjct: 310 NAPDLSNCSIQWCRVSSDGAKKELISGAIKSVYAPEPFDVGRILHVDVISENQHIILSTT 369

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
           G +DPA GLG+YVEALVRKHD EF+VVVTQM+G+ HP+ESIHVLHVGKMRIKLCKGK TI
Sbjct: 370 GPIDPAAGLGTYVEALVRKHDTEFNVVVTQMSGLHHPTESIHVLHVGKMRIKLCKGKTTI 429

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYS+SMQLCGVRGGGNAAAQALFWQ K+G+SFVLAFESERERNA IMLARR AFDCN
Sbjct: 430 AKEYYSSSMQLCGVRGGGNAAAQALFWQPKQGLSFVLAFESERERNAAIMLARRFAFDCN 489

Query: 481 IMLAGPEDRSPLGS 494
           IMLAGP+DR+PLG+
Sbjct: 490 IMLAGPDDRAPLGT 503

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825901|ref|XP_002880833.1| hypothetical protein ARALYDRAFT_481549 [Arabidopsis lyrata subsp. lyrata] gi|297326672|gb|EFH57092.1| hypothetical protein ARALYDRAFT_481549 [Arabidopsis lyrata subsp. lyrata]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/493 (81%), Positives = 453/493 (91%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDF +++Q+D VPAVSADV FASSRFPNY+IGAN+Q+ D KDDPKV+SMKEVVAR
Sbjct: 1   MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQL++QQKRLSVRDLANKFEKGLAAAAKLSEEAKL+EA SLEKHVLLKKLRDALESLR
Sbjct: 61  ETAQLMDQQKRLSVRDLANKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLTQREGEL  EKAEVKKLA FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELFIEKAEVKKLASFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIESARAAVQRVEE+L+EHEQMSRASGKQD E+LMKEVQEARRIKMLHQPS+VM
Sbjct: 181 RAFARAEIESARAAVQRVEEALREHEQMSRASGKQDMEDLMKEVQEARRIKMLHQPSRVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DME+ELRALR QLAEKSK  L L+K+LAM ++ EE +S  YE+DG+EALGS LR++PCSN
Sbjct: 241 DMEYELRALRNQLAEKSKHFLQLQKKLAMCRKSEENISLIYEIDGTEALGSCLRVRPCSN 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           + P+LSKC+IQWYR  S+G KRELISGATKSVYAPEPFDVGR+L A+ITY+G+ ++L+T 
Sbjct: 301 DAPDLSKCTIQWYRSSSDGSKRELISGATKSVYAPEPFDVGRVLHADITYDGRLLSLSTV 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
           G +DPA GLGSYVEALVRKHDV+F+VVVTQM+G DH SESIH+ HVGKMRIKLCKGK  I
Sbjct: 361 GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVI 420

Query: 421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
           AKEYYS++MQLCGVRGGGNAAAQAL+WQAKKGVSFV+AFESERERNA IMLARR A DCN
Sbjct: 421 AKEYYSSAMQLCGVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACDCN 480

Query: 481 IMLAGPEDRSPLG 493
           + LAGP+DR+  G
Sbjct: 481 VTLAGPDDRTETG 493

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
TAIR|locus:2043828	496	SCAB1 "stomatal closure-relate	0.997	0.993	0.768	4.2e-198
TAIR|locus:2058455	492	AT2G40820 "AT2G40820" [Arabido	0.985	0.989	0.551	1.6e-134
TAIR|locus:2102534	490	AT3G56480 "AT3G56480" [Arabido	0.983	0.991	0.554	1e-132
UNIPROTKB|Q15149	4684	PLEC "Plectin" [Homo sapiens (	0.364	0.038	0.271	1.2e-05
UNIPROTKB|F1PHS5	4691	PLEC "Uncharacterized protein"	0.346	0.036	0.265	1.2e-05
UNIPROTKB|O01395	275	mst101(3) "Axoneme-associated	0.331	0.596	0.289	6.7e-05
RGD|628597	1212	Filip1 "filamin A interacting	0.374	0.152	0.271	0.00011
UNIPROTKB|F1PJ01	1972	MYH11 "Uncharacterized protein	0.384	0.096	0.262	0.00012
UNIPROTKB|Q8EH53	592	SO_1377 "Putative negative reg	0.495	0.413	0.244	0.00012
TIGR_CMR|SO_1377	592	SO_1377 "conserved hypothetica	0.495	0.413	0.244	0.00012

TAIR|locus:2043828 SCAB1 "stomatal closure-related actin binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
 Identities = 379/493 (76%), Positives = 428/493 (86%)

Query:     1 MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
             MTRV+RDF +++Q+D VPAVSADV FASSRFPNY+IGAN+Q+ D KDDPKV+SMKEVVAR
Sbjct:     1 MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query:    61 ETAQLLEQQKRLSVRDLANKFXXXXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALESLR 120
             ETAQL++QQKRLSVRDLA+KF                        HVLLKKLRDALESLR
Sbjct:    61 ETAQLMDQQKRLSVRDLAHKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query:   121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
             GRVAGRNKDDVEEAIAMVEALAVQLTQREGEL  EKAEVKKLA FLK+ASEDAKKLVDEE
Sbjct:   121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELFIEKAEVKKLASFLKQASEDAKKLVDEE 180

Query:   181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
             RAFARAEIESARAAVQRVEE+L+EHEQMSRASGKQD E+LMKEVQEARRIKMLHQPS+VM
Sbjct:   181 RAFARAEIESARAAVQRVEEALREHEQMSRASGKQDMEDLMKEVQEARRIKMLHQPSRVM 240

Query:   241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
             DME+ELRALR QLAEKSK  L L+K+LAM ++ EE +S  YE+DG+EALGS LR++PCSN
Sbjct:   241 DMEYELRALRNQLAEKSKHFLQLQKKLAMCRKSEENISLVYEIDGTEALGSCLRVRPCSN 300

Query:   301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
             + P+LSKC+IQWYR  S+G K+ELISGATKSVYAPEPFDVGR+L A+I Y+G  ++L+T 
Sbjct:   301 DAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIYDGHSLSLSTV 360

Query:   361 GAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTI 420
             G +DPA GLGSYVEALVRKHDV+F+VVVTQM+G DH SESIH+ HVGKMRIKLCKGK  I
Sbjct:   361 GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVI 420

Query:   421 AKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCN 480
             AKEYYS++MQLCGVRGGGNAAAQAL+WQAKKGVSFV+AFESERERNA IMLARR A DCN
Sbjct:   421 AKEYYSSAMQLCGVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACDCN 480

Query:   481 IMLAGPEDRSPLG 493
             + LAGPEDR+  G
Sbjct:   481 VTLAGPEDRTETG 493

GO:0005634 "nucleus" evidence=ISM

GO:0003779 "actin binding" evidence=IDA

GO:0007015 "actin filament organization" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2058455 AT2G40820 "AT2G40820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
 Identities = 272/493 (55%), Positives = 359/493 (72%)

Query:     1 MTRV--SRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKD-DPKVLSMKEV 57
             MT+V    +    + +  V  +SADV FAS+ FP YK+G ++Q+VD  D D KV S+K+V
Sbjct:     1 MTKVCPKTEEKRVVSEAVVEPISADVSFASNHFPTYKLGPDDQIVDEPDEDDKVPSVKDV 60

Query:    58 VARETAQLLEQQKRLSVRDLANKFXXXXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALE 117
             V +ET  L +Q K+LSVRDLA KF                        HV+LKKLRDALE
Sbjct:    61 VGKETGDLSDQHKKLSVRDLACKFDKNLAAASKLVDEAKLNDVTSLEGHVMLKKLRDALE 120

Query:   118 SLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLV 177
             ++RGR+ GRN++ VE+AI+MVEALAV+LTQ EGELI +K EVKKLA FLKKAS+DAKKLV
Sbjct:   121 TMRGRMDGRNREAVEKAISMVEALAVKLTQNEGELIHDKFEVKKLASFLKKASDDAKKLV 180

Query:   178 DEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQEARRIKMLHQ 235
             ++E++FA AEIESARA V ++  + +E E  S+AS  Q  + E+L++EVQEARRI+ LH+
Sbjct:   181 NQEKSFACAEIESARALVMKLGGAFEEQELCSKASRDQGPNVEKLVEEVQEARRIRRLHK 240

Query:   236 PSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRI 295
             P+ V+ M+HELR L+ Q+ EKS  S+ L++E+A+ K+ E   S  Y LDG+++LGS LRI
Sbjct:   241 PTMVIGMQHELRDLKSQIQEKSAYSVKLQREIAIIKKAEGSKSCPYVLDGAQSLGSCLRI 300

Query:   296 KPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQI 355
             +  S++G ++SKCSI WYR  SE  +RE ISGA +SVYAPEPFDVGR++QA+I  NGQ+ 
Sbjct:   301 RASSDSGIDISKCSIHWYRAASESSRREAISGANRSVYAPEPFDVGRVIQADIVSNGQKF 360

Query:   356 TLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCK 415
             T+TT G ++ A GL S VE+L+RK + EF VV++QMNG DH S S HV  VGK RIKL +
Sbjct:   361 TVTTDGPINTAAGLQSRVESLLRKSNSEFTVVISQMNGQDHASRS-HVFTVGKARIKLSR 419

Query:   416 GKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRL 475
             G +T A+E YSTSMQLCGVRG  N  A+ALFWQ +KG++F+L FESE+ERNA I+LAR  
Sbjct:   420 GWITKAREIYSTSMQLCGVRGNANVPAKALFWQLRKGLTFLLTFESEQERNAAIVLARTY 479

Query:   476 AFDCNIMLAGPED 488
             A+DCN+ L GP+D
Sbjct:   480 AYDCNVTLVGPDD 492

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2102534 AT3G56480 "AT3G56480" [Arabidopsis thaliana (taxid:3702)]

 Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
 Identities = 273/492 (55%), Positives = 349/492 (70%)

Query:     1 MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDG-KDDPKVLSMKEVVA 59
             MT+V  +   T+    VP VS DV FAS  FP YK+G +NQ+V+  K+D K  S+KE V 
Sbjct:     1 MTKVCPEIEGTLSLSVVP-VSVDVSFASDHFPTYKLGPDNQIVEEPKEDEKGPSVKETVE 59

Query:    60 RETAQLLEQQKRLSVRDLANKFXXXXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALESL 119
             +E+  L +Q KRLSVRDLA+KF                        HV+LKKLRDALE +
Sbjct:    60 KESELLSDQHKRLSVRDLASKFDKNLAAAVSLANEAKLREVASLEGHVMLKKLRDALEYM 119

Query:   120 RGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDE 179
             RGR  G+NK DVE AI+MVEALAV+LTQ EGELIQEK EVKKL +FLK+ SEDAKKLV++
Sbjct:   120 RGRTDGQNKQDVETAISMVEALAVKLTQNEGELIQEKFEVKKLGNFLKQTSEDAKKLVNQ 179

Query:   180 ERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQEARRIKMLHQPS 237
             E++F+ AEIE+ARA V R+ E+ +E E++S AS  Q  D E+L++EVQEAR+IK +H P+
Sbjct:   180 EKSFSCAEIETARAVVLRLGEAFEEQERISEASRAQGPDVEKLVEEVQEARQIKRMHHPT 239

Query:   238 KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKP 297
             KVM M+HEL  LR ++ EK   S+ L KE+A+ KR+EE  S  + L+G ++LGS LRI+ 
Sbjct:   240 KVMGMQHELHGLRNRIQEKYMNSVKLHKEIAIIKRVEESKSCPFVLEGKQSLGSCLRIRV 299

Query:   298 -CSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQIT 356
                +N P+LS CSIQWYR   E  +RE ISGA +S+YAPEPFDVGRILQA+I  NGQ+ T
Sbjct:   300 NAQDNAPDLSNCSIQWYRAACETSRREAISGAIQSMYAPEPFDVGRILQADILSNGQKFT 359

Query:   357 LTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKG 416
             +TT   VDP  GL S VE+L+RK + EF VV++QMNG D+ S S HV  VGK RIKL +G
Sbjct:   360 VTTDDPVDPDSGLPSRVESLMRKSNSEFSVVISQMNGQDYASRS-HVFTVGKTRIKLSRG 418

Query:   417 KMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLA 476
              +T A+E YSTSMQLCGVRG   A  +A+FWQ +K ++F+L FESE ERNA I LAR+ A
Sbjct:   419 WITKARELYSTSMQLCGVRGNIKAPTKAVFWQPRKSLTFILTFESEHERNAAIALARKYA 478

Query:   477 FDCNIMLAGPED 488
             FDC++ L GP+D
Sbjct:   479 FDCSVTLLGPDD 490

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

UNIPROTKB|Q15149 PLEC "Plectin" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 51/188 (27%), Positives = 93/188 (49%)

Query:   109 LKKLRDA-LESLRGRVAG--RNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             L+K  D+ LE  +G V    R +  VEE I  ++A   +    + EL  E   ++  A+ 
Sbjct:  2035 LRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAED 2094

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRA--SGKQDFEELMKE 223
               ++ E A+     +R  A  E    R A +RV++SL   E+ +R   +  ++ E L  +
Sbjct:  2095 TLRSKEQAELEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAK 2154

Query:   224 VQEARRIK-MLHQPS-KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSY 281
             V+EARR++    Q S + + +  E    R+Q  EK+    + +KE  + + ++++ S   
Sbjct:  2155 VEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLD 2214

Query:   282 ELDG-SEA 288
             +L G +EA
Sbjct:  2215 QLRGEAEA 2222

GO:0003779 "actin binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030056 "hemidesmosome" evidence=IDA

GO:0031581 "hemidesmosome assembly" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0030506 "ankyrin binding" evidence=IPI

GO:0016528 "sarcoplasm" evidence=ISS

GO:0043034 "costamere" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|F1PHS5 PLEC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 47/177 (26%), Positives = 86/177 (48%)

Query:   108 LLKKLRDALESLRGRVAG--RNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             L K   + LE  +G V    R +  VEE I  ++A   +    + EL  E   ++  A+ 
Sbjct:  2042 LRKASENELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAED 2101

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRA--SGKQDFEELMKE 223
               ++ E A+     +R  A  E +  R A +RV++SL   E+ +R   S  ++ E L  +
Sbjct:  2102 TLRSKEQAELEATRQRQLAAEEEQRRREAEERVQKSLAAEEEAARQRKSALEEVERLKAK 2161

Query:   224 VQEARRIK-MLHQPS-KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLS 278
             V+EARR++    Q S + + +  E    R+Q  EK+    + +KE  + + ++++ S
Sbjct:  2162 VEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQS 2218

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030056 "hemidesmosome" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|O01395 mst101(3) "Axoneme-associated protein mst101(3)" [Drosophila hydei (taxid:7224)]

 Score = 123 (48.4 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 51/176 (28%), Positives = 83/176 (47%)

Query:   110 KKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQ--LTQRE--GELIQ---EKAEVKKL 162
             KK ++A E  +   A + + +  E     EA   +    Q++   EL +   E AE KK 
Sbjct:    72 KKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEQEAAQKKKCAELAKKEKEAAEKKKC 131

Query:   163 ADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFE-ELM 221
             A+  KK  E A++   EE AF + + E A A  ++  +   E +Q   A  K++ E E+M
Sbjct:   132 AEAAKKEKEAAERKKCEEAAF-KQKCEEA-AKKKKEAKKAAELQQKCAALAKKEKEAEMM 189

Query:   222 KEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRK--ELAMSKRIEE 275
             K+ +EA + K   + +K    E   +    + A K KC+   +K  E A+ K  EE
Sbjct:   190 KKCEEAAKKKAAEEAAKKKAEEVAAKKKADEAAAKKKCAEAKKKAEEAALKKMCEE 245

GO:0007291 "sperm individualization" evidence=IEP

RGD|628597 Filip1 "filamin A interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
 Identities = 54/199 (27%), Positives = 94/199 (47%)

Query:   108 LLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVK-KLADFL 166
             L +KLR+  E L+  V  ++K+D ++ +     L V    +     QE  E+  KLA+  
Sbjct:   270 LTQKLREEEEKLKA-VTYKSKEDRQKLLK----LEVDFEHKASRFSQEHEEMNAKLANQE 324

Query:   167 KKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE 226
                 +   KLV   +     E+E    ++Q+ EE LQE  +   A G+     LM EV+ 
Sbjct:   325 SHNRQLRLKLVGLSQRIE--ELEETNKSLQKAEEELQELREKI-AKGECGNSSLMAEVES 381

Query:   227 ARR--IKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELA-MSKRIEE--KLSDSY 281
              R+  ++M  +  ++   E + R L+ +L E+   S  LR E+  + KR+ E  KL +++
Sbjct:   382 LRKRVLEMEGKDEEITKTEAQCRELKKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAF 441

Query:   282 ELDGSEALGSYLRIKPCSN 300
                 SE    +L ++   N
Sbjct:   442 SRSKSECTQLHLNLEKEKN 460

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|F1PJ01 MYH11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 0.00012, P = 0.00012
 Identities = 53/202 (26%), Positives = 99/202 (49%)

Query:   112 LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
             + D  E L    A RNK + ++   + E L    T+ E + +   A  ++L    ++   
Sbjct:  1120 ISDLQEDLDSERAARNKAEKQKR-DLGEELEALKTELE-DTLDSTATQQELRAKREQEVT 1177

Query:   172 DAKKLVDEERAFARAEIESARAA-VQRVEESLQEHEQMSRASGKQDFEE--LMKEVQE-A 227
               KK +DEE     A+++  R    Q VEE  ++ EQ  RA    D  +  L KE  + A
Sbjct:  1178 VLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKNKQTLEKENADLA 1237

Query:   228 RRIKMLHQPSKVMDMEHELRALRIQLAE-KSKCSLLLRKELAMSKRIEEKLSDSYELDG- 285
               +++L+Q  +  ++EH+ + L +QL E +SKCS   R    ++ ++ +  ++   + G 
Sbjct:  1238 GELRVLNQAKQ--EVEHKKKKLEVQLQELQSKCSDGERARAELNDKVHKLQNEVESVTGM 1295

Query:   286 -SEALGSYLRI-KPCSNNGPEL 305
              +EA G  +++ K  ++ G +L
Sbjct:  1296 LNEAEGKAIKLAKDVASLGSQL 1317

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0048251 "elastic fiber assembly" evidence=IEA

GO:0030485 "smooth muscle contractile fiber" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q8EH53 SO_1377 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
 Identities = 63/258 (24%), Positives = 112/258 (43%)

Query:   110 KKLRDALESLRGRVAGRN----KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             K+  D  +  R ++  RN    K+ +E   A  EA  +Q    E +   +KAE+ K  + 
Sbjct:   221 KETNDIQQENRIKIEQRNLEAEKESLEIEKAEEEARLIQQQSLEFKRADQKAEIIKQKE- 279

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQ 225
               KA E+ +  + +ERA   AEIE  +    R  E  +  EQ SR   ++D E   +E +
Sbjct:   280 -NKAREEREAEIAKERAIETAEIEKTKDIETREIEKHKSIEQ-SRIQQQRDIEVAEQEKR 337

Query:   226 EARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDG 285
              A   K   + S       E   L++   EK +  +  R+    ++R E ++ D+ +   
Sbjct:   338 IAVAAKS-EEESAARARAAEAEKLKV---EKEEAVITARQVAEANRRKEIEVIDARKEAE 393

Query:   286 SEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQ 345
              +A+G  ++ +       + S   +   R  ++  K  L + A + VYA E      + +
Sbjct:   394 RDAVGVTVQAEAEKRAAEDRSSAILIEARASADAKK--LQAEADEKVYAVEAAGKQALYE 451

Query:   346 AEITYNGQQITLTTTGAV 363
             AE     +QI L  + A+
Sbjct:   452 AENVLRDEQIALQKSLAI 469

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1377 SO_1377 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
 Identities = 63/258 (24%), Positives = 112/258 (43%)

Query:   110 KKLRDALESLRGRVAGRN----KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             K+  D  +  R ++  RN    K+ +E   A  EA  +Q    E +   +KAE+ K  + 
Sbjct:   221 KETNDIQQENRIKIEQRNLEAEKESLEIEKAEEEARLIQQQSLEFKRADQKAEIIKQKE- 279

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQ 225
               KA E+ +  + +ERA   AEIE  +    R  E  +  EQ SR   ++D E   +E +
Sbjct:   280 -NKAREEREAEIAKERAIETAEIEKTKDIETREIEKHKSIEQ-SRIQQQRDIEVAEQEKR 337

Query:   226 EARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDG 285
              A   K   + S       E   L++   EK +  +  R+    ++R E ++ D+ +   
Sbjct:   338 IAVAAKS-EEESAARARAAEAEKLKV---EKEEAVITARQVAEANRRKEIEVIDARKEAE 393

Query:   286 SEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQ 345
              +A+G  ++ +       + S   +   R  ++  K  L + A + VYA E      + +
Sbjct:   394 RDAVGVTVQAEAEKRAAEDRSSAILIEARASADAKK--LQAEADEKVYAVEAAGKQALYE 451

Query:   346 AEITYNGQQITLTTTGAV 363
             AE     +QI L  + A+
Sbjct:   452 AENVLRDEQIALQKSLAI 469

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IX000462 hypothetical protein (494 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	494
cd13232	119	cd13232, Ig-PH_SCAB1, Stomatal Closure Related Act	1e-64
cd11675	85	cd11675, SCAB1_middle, middle domain of the stomat	5e-45
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-07
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	5e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam07227	446	pfam07227, DUF1423, Protein of unknown function (D	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003

>gnl|CDD|241386 cd13232, Ig-PH_SCAB1, Stomatal Closure Related Actin-Binding Protein 1 Pleckstrin homology-like domain

 Score =  204 bits (521), Expect = 1e-64
 Identities = 79/119 (66%), Positives = 98/119 (82%)

Query: 366 APGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYY 425
           A GLG+YVEAL++K   EF+VV+TQMNG D  S+S+H+ H+GK+R+KL KG+ T AKE Y
Sbjct: 1   AAGLGNYVEALLKKGGPEFNVVLTQMNGEDVESKSLHMFHIGKLRMKLRKGRTTKAKEKY 60

Query: 426 STSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLA 484
           S+ MQLCG RGGG AAA+ALFW  KKG++++L FESERERNA IMLARR AFDCN+ LA
Sbjct: 61  SSGMQLCGARGGGQAAARALFWLVKKGLTYMLGFESERERNAAIMLARRFAFDCNVGLA 119

SCAB1 is an actin-binding protein that interacts with actin filaments and regulates stomatal movement. SCAB1 is composed of an actin-binding domain, two coiled-coil (CC) domains, and a fused immunoglobulin (Ig) and PH (Ig-PH) domain. SCAB1 homologs are widely present, often in multiple copies (three in Arabidopsis), in plants including eudicots, monocots, ferns and mosses, but are not found in algae and non-plant species. The C-terminal PH domain binds weakly with inositol phosphates via an atypical basic surface patch. SCAB1 forms a dimeric structure via its coiled-coil domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|212565 cd11675, SCAB1_middle, middle domain of the stomatal closure-related actin binding protein1

 Score =  152 bits (385), Expect = 5e-45
 Identities = 55/84 (65%), Positives = 68/84 (80%)

Query: 281 YELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDV 340
           YELDG E LGS LRI P  ++ P+LSKCSIQW+R+ S+G K+ELISGATK  YAPEPFDV
Sbjct: 2   YELDGEERLGSCLRIVPRDDDSPDLSKCSIQWHRIASDGSKKELISGATKPQYAPEPFDV 61

Query: 341 GRILQAEITYNGQQITLTTTGAVD 364
           GR+LQA+I   GQ+ +L+TTG +D
Sbjct: 62  GRLLQADIVLPGQKESLSTTGPID 85

SCAB1 is a dimeric actin crosslinker conserved in plants. The three-dimensional structure of this domain resembles that of fibronectin type III repeat units and immunoglobulins. It is situated between a coiled-coil dimerization domain and a C-terminal pleckstrin homology-like module. SCAB1 appears to be required for normal actin dynamics in guard cells stomatal movement. The function of the middle domain is not clear. Length = 85

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 12/194 (6%)

Query: 83   KGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALA 142
            K  AAA K ++EAK +     +     KK  +A      + A   K   EEA    EA  
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA------KKADEAKKKAEEAKKAEEAKK 1464

Query: 143  VQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202
                 ++ +  ++KAE  K AD  KK +E+AKK  DE +   +A     +A   +  E  
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK---KAAEAKKKADEAKKAEEA 1521

Query: 203  QEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLL 262
            ++ ++  +A   +  +E  K+ +E ++   L +  ++   E + +A   + AE+ K   L
Sbjct: 1522 KKADEAKKAEEAKKADEA-KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580

Query: 263  LRKELAMSKRIEEK 276
             + E A  K+ EE 
Sbjct: 1581 RKAEEA--KKAEEA 1592

Length = 2084

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 18/208 (8%)

Query: 12  MQKDAV--PAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQ 69
           + ++ +   A    V    S F +         +    +  + S KE + + + +L E +
Sbjct: 124 LLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELK 183

Query: 70  KRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHV--LLKKLRDALESLRGRVAGRN 127
                 +L    ++      +L  + +    A LE     L K+LR   E  +  +  + 
Sbjct: 184 AEEE-EELERALKE---KREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKY 239

Query: 128 KDDVEEAIAMVEALAVQLTQR-EGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186
           ++ + + +   E  A    Q+ + EL  +  E+++      + +++ K+ V+EER    A
Sbjct: 240 EEKLRQEL---ERQAEAHEQKLKNELALQAIELQR------EFNKEIKEKVEEERNGRLA 290

Query: 187 EIESARAAVQRVEESLQEHEQMSRASGK 214
           ++    + ++ +E++L    +    + K
Sbjct: 291 KLAELNSRLKGLEKALDSRSEAEDENHK 318

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 20/252 (7%)

Query: 52  LSMKEVVARETAQLLEQ-QKRLSV--RDLANKFEKGLAAAAKLSEEAKLREAASLEKHVL 108
               E  AR   +      +RL    + L +K E  +A   + +E   LR+  + +   L
Sbjct: 640 QKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ-LRQLDA-QLKQL 697

Query: 109 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKK 168
           L++ +  LE+L+        + + +   +   L  QL Q    +   + + K     LKK
Sbjct: 698 LEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKK 757

Query: 169 A--SEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE 226
               E A   VD         ++  +  ++ +E +++      R    +++   M+E   
Sbjct: 758 QYDRELASLDVDPNT------VKELKRQIEELETTIERIAV--RRPEVREYRAFMQETWL 809

Query: 227 ARRIKMLHQP---SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSD--SY 281
            R      +P    ++ ++E     L+ +L    K + L RK+L   ++  EK  D    
Sbjct: 810 HRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDE 869

Query: 282 ELDGSEALGSYL 293
            L G       L
Sbjct: 870 LLRGLRDEMRQL 881

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 56  EVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDA 115
           E +  E  +L E+ + L  R L    E+  +    L++  +  E    ++  L ++L + 
Sbjct: 740 EELEEELEELEEELEELQER-LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798

Query: 116 LESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK 175
            E L    A R  D +E  +  +E    +L Q   EL +E  E+++  D L++  E+ +K
Sbjct: 799 EEELEE--AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 176 LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQ 235
            ++E     + E+E   A  + +E+ L+E E+  +   +++  EL  E+ E +  ++   
Sbjct: 857 ELEE----LKEELEELEAEKEELEDELKELEEE-KEELEEELRELESELAELKE-EIEKL 910

Query: 236 PSKVMDMEHELRALRIQLAE-----KSKCSLLLRKEL-AMSKRIEEKLSD 279
             ++ ++E +L  L ++L E     + +    L  EL    +R+EE++  
Sbjct: 911 RERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960

Length = 1163

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK----KLVDEE 180
           G +K+ + E IA +E L  +L Q+  E      E +KL + L++  E  +    KL++E 
Sbjct: 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGK-QDFEELMKEVQEARRIKMLHQPSKV 239
              A+  I+ A+     + + L++ ++   AS K  +  E  K + +A   K   +  + 
Sbjct: 572 EKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQK 631

Length = 782

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 8e-04
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 23/216 (10%)

Query: 61   ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
            E A+  E+ +   V  L  + +K  A  AK +EEAK++ A  L+K           E  +
Sbjct: 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK-AEELKKA----------EEEK 1632

Query: 121  GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
             +V    K + EE     +  A +L + E E   + AE  K A+  KK +E+AKK  ++E
Sbjct: 1633 KKVEQLKKKEAEE-----KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 181  RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
            +  A A  + A  A +  E   +E E+  +A      EEL K  +E  +IK      +  
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKA------EELKKA-EEENKIKAEEAKKEAE 1740

Query: 241  DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEK 276
            + + +    +    EK K + L ++E   ++ I ++
Sbjct: 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 47/218 (21%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 60   RETAQLLEQQKRLSVRDLANKFEKGLAA--AAKLSEEAKLREAASLEKHVLLKKLRDALE 117
            ++  +  + +++    +   K E+   A  A K +EEAK ++A + +K     K      
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAA 1348

Query: 118  SLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLV 177
                  A    +  EE  A       +  +++ +  ++KAE KK AD  KK +E+ KK  
Sbjct: 1349 KAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407

Query: 178  DEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPS 237
            DE        ++ A AA ++ +E+ ++ E+  +A      +E  K+ +EA++     + +
Sbjct: 1408 DE--------LKKAAAAKKKADEAKKKAEEKKKA------DEAKKKAEEAKKADEAKKKA 1453

Query: 238  KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEE 275
            +      E +    + AE++K +   +K+   +K+ +E
Sbjct: 1454 EEAKKAEEAK----KKAEEAKKADEAKKKAEEAKKADE 1487

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 19/234 (8%)

Query: 55  KEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRD 114
           K  +     +L E Q+ L   +L  + E+     + L E  +  E    E    L++L++
Sbjct: 273 KSELEELREELEELQEEL--LELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 115 ALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK 174
            +E+L+  +  R     E     +E L  +L + + EL ++ + + +  + L +A  +  
Sbjct: 331 KIEALKEELEERETLLEE-----LEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385

Query: 175 KLVDEERAFARAEIESARAAVQRVEESLQEHEQM------SRASGKQDFEELMKEVQEAR 228
             ++ E A  R E+E  +  ++ +EE L+   +            + + EEL  E++E  
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445

Query: 229 -RIKMLHQP-----SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEK 276
             ++ L +       ++ ++E EL  L+ +L    K    L   L   +  +  
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 22/189 (11%)

Query: 110 KKLRDALESLRGRVAGRNKDDVEEAIAMVEA----LAVQLTQREGELIQEKAEVKKLADF 165
           + L        G    + K+ +E     +E     L  +L +   E+ + +  ++++   
Sbjct: 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273

Query: 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE-QMSRASGKQ--------- 215
           L++ ++  K L +EE+   + +I    A +  +E S+ E E ++  A  +          
Sbjct: 274 LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333

Query: 216 ---DFEELMKEVQE--ARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMS 270
              + EEL +E++E   RR K+     +  +++ EL  LR +L E  K     R EL   
Sbjct: 334 LLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390

Query: 271 KRIEEKLSD 279
           +   EKL  
Sbjct: 391 REKLEKLKR 399

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 23/243 (9%)

Query: 54  MKEVVARETAQLLEQQKRLSVRDLANKFEKGLA-AAAKLSEEAKLREAASLEKHVLLKKL 112
             EV   E      Q++  ++ +  ++ E+       +L+   +  E    +   L  KL
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332

Query: 113 RDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED 172
            +  E L          ++EE +  ++     L     EL  E  E++   + L++  E 
Sbjct: 333 DELAEEL---------AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383

Query: 173 AKKLVDE---ERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE--A 227
            +  V +   + A    EIE   A ++R+E+  +  +Q      K+  E  +KE+Q    
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443

Query: 228 RRIKMLHQ-PSKVMDMEHELRALRIQLAEKSKCSLLLRKELA-------MSKRIEEKLSD 279
              + L +   ++  +E  L  LR +L E  +      +ELA         +R++E L  
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503

Query: 280 SYE 282
             E
Sbjct: 504 FSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423)

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 21/142 (14%)

Query: 87  AAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAG-------------RNKDDVEE 133
            A  + E  +  E+ + EK  +LKK R AL++    +               R K  ++E
Sbjct: 295 IAEVVQEAVRKMESVAEEKMRMLKKARSALDACDRELEEKAREVSELKMERQRKKPQIDE 354

Query: 134 AIAMVEALAVQLTQREGELIQEKA-EVKKLADFLKKASEDAKKLVDEERA--FARAEIES 190
               +E++ V+L Q E ++ Q KA E ++ A+ L++ +    +  +EE A  + +  +  
Sbjct: 355 ----LESI-VRLKQAEADMFQLKADEARREAERLQRIALAKTEKSEEEYASKYLKLRLSE 409

Query: 191 ARAAVQRVEESLQEHEQMSRAS 212
           A    Q + E L+  E+  R S
Sbjct: 410 AEEERQYLFEELKLQEESHRDS 431

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 22/228 (9%)

Query: 56  EVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDA 115
               RE     E+  +L   ++     +      ++ EE K R+  + E      +L++ 
Sbjct: 311 AEKERELEDAEERLAKLEA-EIDKLLAEIEELEREIEEERKRRDKLTEE----YAELKEE 365

Query: 116 LESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK 175
           LE LR  +      +V++  A          ++  +L +E  E+K+  D L    ++  +
Sbjct: 366 LEDLRAELE-----EVDKEFAETRDELKDYREKLEKLKREINELKRELDRL----QEELQ 416

Query: 176 LVDEERAFARAEIESARAAVQRVE---ESLQEHEQMSRASGKQDFEELMKEVQEARRIKM 232
            + EE A   A I    A +  +E   E      +      +Q   +L K  QE   +K 
Sbjct: 417 RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK- 475

Query: 233 LHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDS 280
                +   +E EL  L+ +LAE    +    + +   + +EE L  S
Sbjct: 476 ----EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 32/230 (13%)

Query: 55  KEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRD 114
           KE++   TA+L   +K L  +++  K  K      +L  E  L++ + L K   LK+L +
Sbjct: 451 KELLEEYTAELKRIEKEL--KEIEEKERKLRKELREL--EKVLKKESELIK---LKELAE 503

Query: 115 ALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK 174
            L+ L  ++   N +++E+     E L  +L + +GE+   K E++KL +  KK +E  K
Sbjct: 504 QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563

Query: 175 KLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE-----ARR 229
           KL                     +EE L E  +     G +  EEL + ++E        
Sbjct: 564 KL-------------------DELEEELAELLKELEELGFESVEELEERLKELEPFYNEY 604

Query: 230 IKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAM-SKRIEEKLS 278
           +++     ++   E EL+ L  +L +  +      K L    K +EE   
Sbjct: 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	494
PRK00409	782	recombination and DNA strand exchange inhibitor pr	90.8
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.02
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	87.32
PRK04863	1486	mukB cell division protein MukB; Provisional	84.8
PRK09039	343	hypothetical protein; Validated	84.61
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.59
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	82.8
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	82.63
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	81.83
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	81.24
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	80.63

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=90.80  E-value=3.1  Score=46.83  Aligned_cols=81  Identities=27%  Similarity=0.382  Sum_probs=59.3

Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011054          125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED----AKKLVDEERAFARAEIESARAAVQRVEE  200 (494)
Q Consensus       125 GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD----AkkiV~eeRa~A~aEIE~ArAaV~Rve~  200 (494)
                      +....++++.|.=.+..-.++-++..|+.+++.|++++-+-++..-+.    -+++.++.+..|+..|+.||..+..+-.
T Consensus       512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~  591 (782)
T PRK00409        512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK  591 (782)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667888888888888888888888888888887777766665443    4567777777788888888877777666


Q ss_pred             HHHHH
Q 011054          201 SLQEH  205 (494)
Q Consensus       201 al~Eq  205 (494)
                      -|++.
T Consensus       592 ~lk~~  596 (782)
T PRK00409        592 ELRQL  596 (782)
T ss_pred             HHHHh
Confidence            66654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.02  E-value=32  Score=34.72  Aligned_cols=102  Identities=23%  Similarity=0.391  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011054          130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMS  209 (494)
Q Consensus       130 dveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eqe~~s  209 (494)
                      .+.+.+..+.-+-.++..+-.+|..+-...+.++.-+....-+-=.-..++=+...++|+.=|.-+..++.-+++-+...
T Consensus       167 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i  246 (325)
T PF08317_consen  167 KLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI  246 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666665555555555555554444444433322222211112222333333344444444444444444333332


Q ss_pred             hhcCcccHHHHHHHHHHHHhhhh
Q 011054          210 RASGKQDFEELMKEVQEARRIKM  232 (494)
Q Consensus       210 ~~s~kqd~e~L~~EvqEARRIKm  232 (494)
                       ...++...++..+|++|.|+..
T Consensus       247 -~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  247 -EELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             2233366777778888877765

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=87.32  E-value=12  Score=36.01  Aligned_cols=52  Identities=25%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 011054          104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEV  159 (494)
Q Consensus       104 er~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EV  159 (494)
                      =..++++.+..+|+.=+.++.+    ++++|-.+-+-..-.+.+-|.+|.+-+.|.
T Consensus        70 L~k~~~~pI~~vLe~R~~~I~~----~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA  121 (204)
T PRK09174         70 MSRVILPRIGGIIETRRDRIAQ----DLDQAARLKQEADAAVAAYEQELAQARAKA  121 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888899999987777754    555555554444444444444444444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.80  E-value=84  Score=38.63  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccC--CccccccHHHHHHHHHHHHHHhHHH
Q 011054          183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQ--PSKVMDMEHELRALRIQLAEKSKCS  260 (494)
Q Consensus       183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~--PSKvMDmE~El~~LR~ql~eKs~~~  260 (494)
                      ...++++.+...+..++..+.+........ .+++..+...++...++++|-+  |--.-+++..+.....++.++....
T Consensus       380 eleeEleelEeeLeeLqeqLaelqqel~el-Q~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL  458 (1486)
T PRK04863        380 ENEARAEAAEEEVDELKSQLADYQQALDVQ-QTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL  458 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555544444332222211 2367788888899999999987  3334567788888888888888888


Q ss_pred             HHHHHHHHHhhhh
Q 011054          261 LLLRKELAMSKRI  273 (494)
Q Consensus       261 v~L~KEL~~~kr~  273 (494)
                      ..+..+|..++..
T Consensus       459 ~elE~kL~~lea~  471 (1486)
T PRK04863        459 LSLEQKLSVAQAA  471 (1486)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888765543

>PRK09039 hypothetical protein; Validated

Probab=84.61  E-value=44  Score=34.35  Aligned_cols=120  Identities=21%  Similarity=0.271  Sum_probs=61.4

Q ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHH---hhHHHHHHHHH----------HHHhHHHHHH-------HHHHHHHHHHH
Q 011054          141 LAVQLTQREGELIQEKAEVKKLADFLKK---ASEDAKKLVDE----------ERAFARAEIE-------SARAAVQRVEE  200 (494)
Q Consensus       141 LavqltqrE~ELiQeK~EVkKlA~~lKq---ASeDAkkiV~e----------eRa~A~aEIE-------~ArAaV~Rve~  200 (494)
                      |..++|.++.||-+-..++..|+..|..   .+.|....+.+          +|+....-.+       .+.+.....++
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~  123 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ  123 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence            5566777777777777777666654432   33333222222          2221111111       11222333444


Q ss_pred             HHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011054          201 SLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAM  269 (494)
Q Consensus       201 al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~  269 (494)
                      .|.+....+..... ++..|+.+|..-|+=        .-.+|.+|.++..+..++....-.|.++|..
T Consensus       124 ~L~~~k~~~se~~~-~V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~  183 (343)
T PRK09039        124 ELDSEKQVSARALA-QVELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLNV  183 (343)
T ss_pred             HHHHHHHHHHHhhH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544444433333 555555555555543        4455666666666666777777777777753

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.59  E-value=31  Score=35.34  Aligned_cols=140  Identities=21%  Similarity=0.238  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHH
Q 011054          107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKAS-EDAKKLVDEERAFAR  185 (494)
Q Consensus       107 vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqAS-eDAkkiV~eeRa~A~  185 (494)
                      -|++.|+..|+.=.+.+-. .+.-+.+-+..+.-+--+|..+-.+|..|=..++.+..-+..-. ++.+++- ++=+.-.
T Consensus       140 kllegLk~~L~~~~~~l~~-D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~  217 (312)
T smart00787      140 KLLEGLKEGLDENLEGLKE-DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLL  217 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHH
Confidence            3455555555543333221 12225566666666666777777777666666666665554422 2333443 5556667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 011054          186 AEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL  253 (494)
Q Consensus       186 aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql  253 (494)
                      .+|+..+.-+.-+++-|++-+..-... ++...++..+|++|+++.-=+...   + -+|+..|+.++
T Consensus       218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~-~~~k~e~~~~I~~ae~~~~~~r~~---t-~~Ei~~Lk~~~  280 (312)
T smart00787      218 QEIMIKVKKLEELEEELQELESKIEDL-TNKKSELNTEIAEAEKKLEQCRGF---T-FKEIEKLKEQL  280 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC---C-HHHHHHHHHHH
Confidence            777777777777777776666554433 347888999999999976333222   2 25666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01069 mutS2 MutS2 family protein

Probab=82.80  E-value=16  Score=41.29  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=35.9

Q ss_pred             ceeEEeecCceeeehhhccccccccc---------ccCCcchhhhhhhccccCCceEEEEeeccc
Q 011054          408 KMRIKLCKGKMTIAKEYYSTSMQLCG---------VRGGGNAAAQALFWQAKKGVSFVLAFESER  463 (494)
Q Consensus       408 k~RikL~KG~~t~AkE~YSssMQLCG---------vRGgg~AAa~AlfWq~rkglS~vL~fESeR  463 (494)
                      ..++.|.--....|++.-...+.-|-         +-|=|.-+=+..-|.-=+.+.+|..|....
T Consensus       693 ~~~ldl~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~  757 (771)
T TIGR01069       693 SLTLDLRGQRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKNHPKVKSFRDAP  757 (771)
T ss_pred             CceEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcCCcceeeecccC
Confidence            45666655556677765555554443         445566677777777777778888887643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=82.63  E-value=21  Score=40.25  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             ccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 011054          237 SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR  272 (494)
Q Consensus       237 SKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~kr  272 (494)
                      .+.=|||.||+.||..|..|-..+..|.+|+.-...
T Consensus       545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334478888888888888888888888777753333

; GO: 0016021 integral to membrane

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=81.83  E-value=39  Score=30.39  Aligned_cols=20  Identities=15%  Similarity=0.203  Sum_probs=14.7

Q ss_pred             hHHHHHHHHHHHHHhhcccC
Q 011054          105 KHVLLKKLRDALESLRGRVA  124 (494)
Q Consensus       105 r~vLLKkLr~~LesLrGRva  124 (494)
                      +++|.|.++.+|+.=+-++.
T Consensus        25 ~kfl~kPi~~~l~~R~~~I~   44 (141)
T PRK08476         25 NSWLYKPLLKFMDNRNASIK   44 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56788888888887655544

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=81.24  E-value=30  Score=31.10  Aligned_cols=24  Identities=42%  Similarity=0.473  Sum_probs=11.9

Q ss_pred             HHHhhHHHHHHHHHHHHhHHHHHH
Q 011054          166 LKKASEDAKKLVDEERAFARAEIE  189 (494)
Q Consensus       166 lKqASeDAkkiV~eeRa~A~aEIE  189 (494)
                      |.+|..+|.+++++.++.|+.|.+
T Consensus        68 l~~Ar~eA~~~~~~a~~~A~~ea~   91 (141)
T PRK08476         68 LKNAREEANKIRQKAIAKAKEEAE   91 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555544433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=80.63  E-value=1.3e+02  Score=37.07  Aligned_cols=85  Identities=22%  Similarity=0.186  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHH-hhhhccCCcc-----cc-------ccHHHHHHH
Q 011054          183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEAR-RIKMLHQPSK-----VM-------DMEHELRAL  249 (494)
Q Consensus       183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEAR-RIKmLH~PSK-----vM-------DmE~El~~L  249 (494)
                      .|..+..+|....++.++.++.-....+. .++=++.-++..+-|| |++||-+--+     +|       |||-+...=
T Consensus      1644 ~a~~~a~sa~~~A~~a~q~~~~lq~~~~~-~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~ 1722 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLEILQKYYEL-VDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRN 1722 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45556677777777777777633222222 2234455555555555 5666644221     11       344444344


Q ss_pred             HHHHHHHhHHHHHHHHHHH
Q 011054          250 RIQLAEKSKCSLLLRKELA  268 (494)
Q Consensus       250 R~ql~eKs~~~v~L~KEL~  268 (494)
                      -++|.-|+.+.--|-|+|.
T Consensus      1723 ~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred             hHHHHHHHHHhhhHHHHHH
Confidence            4566667777777777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	494
4dix_A	230	Crystal Structure Of The Ig-Ph Domain Of Actin-Bind		1e-104
4djg_A	52	Crystal Structure Of The Coiled-Coil 1 Domain Of Ac		7e-19

>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding Protein Scab1 Length = 230

Iteration: 1
 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 168/224 (75%), Positives = 196/224 (87%)
Query: 270 SKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGAT 329
           S + EE +S  YE+DG+EALGS LR++PCSN+ P+LSKC+IQWYR  S+G K+ELISGAT
Sbjct: 4   SSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGAT 63
Query: 330 KSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVT 389
           KSVYAPEPFDVGR+L A+I Y+G  ++L+T G +DPA GLGSYVEALVRKHDV+F+VVVT
Sbjct: 64  KSVYAPEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVT 123
Query: 390 QMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQA 449
           QM+G DH SESIH+ HVGKMRIKLCKGK  IAKEYYS++MQLCGVRGGGNAAAQAL+WQA
Sbjct: 124 QMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLCGVRGGGNAAAQALYWQA 183
Query: 450 KKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLG 493
           KKGVSFV+AFESERERNA IMLARR A DCN+ LAGPEDR+  G
Sbjct: 184 KKGVSFVIAFESERERNAAIMLARRFACDCNVTLAGPEDRTETG 227

>pdb|4DJG|A Chain A, Crystal Structure Of The Coiled-Coil 1 Domain Of Actin-Binding Protein Scab1 Length = 52

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/46 (100%), Positives = 46/46 (100%)
Query: 106 HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 151
           HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE
Sbjct: 7   HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	494
4dix_A	230	Plectin-related protein; PH domain, IG domain, mal	1e-117
4djg_A	52	Plectin-related protein; coiled-coil, four helix b	6e-18
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-04

>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230

 Score =  342 bits (878), Expect = e-117
 Identities = 168/224 (75%), Positives = 196/224 (87%)

Query: 270 SKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGAT 329
           S + EE +S  YE+DG+EALGS LR++PCSN+ P+LSKC+IQWYR  S+G K+ELISGAT
Sbjct: 4   SSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGAT 63

Query: 330 KSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVT 389
           KSVYAPEPFDVGR+L A+I Y+G  ++L+T G +DPA GLGSYVEALVRKHDV+F+VVVT
Sbjct: 64  KSVYAPEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVT 123

Query: 390 QMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQLCGVRGGGNAAAQALFWQA 449
           QM+G DH SESIH+ HVGKMRIKLCKGK  IAKEYYS++MQLCGVRGGGNAAAQAL+WQA
Sbjct: 124 QMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLCGVRGGGNAAAQALYWQA 183

Query: 450 KKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLG 493
           KKGVSFV+AFESERERNA IMLARR A DCN+ LAGPEDR+  G
Sbjct: 184 KKGVSFVIAFESERERNAAIMLARRFACDCNVTLAGPEDRTETG 227

>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana} Length = 52

 Score = 76.7 bits (188), Expect = 6e-18
 Identities = 51/52 (98%), Positives = 51/52 (98%)

Query: 100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 151
           A SLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE
Sbjct: 1   ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 41/233 (17%), Positives = 93/233 (39%), Gaps = 31/233 (13%)

Query: 50   KVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLL 109
            K + +++ V    A++   +   ++  L   + + +A      E  KL+  A   +    
Sbjct: 866  KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR----ELKKLKIEARSVER--Y 919

Query: 110  KKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKA 169
            KKL   LE+   ++  +    ++E     ++L  ++   E     E  +++   + L+ +
Sbjct: 920  KKLHIGLENKIMQLQRK----IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 170  SEDAKKL------VDEERAFARAEIESARAAVQRVEESLQEHEQMSR---ASGKQDFEEL 220
             E+AK        + EE A  R E+   +   + +EE   +++  +    +  K+    L
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Query: 221  MKEVQEARRIKMLHQPSKVMDMEHELR-ALRIQLAEKSKCSLLLRKELAMSKR 272
              E +E  R        ++ D   E+   +  +L E++K    L  +L   + 
Sbjct: 1036 KTEKEELNR--------RIHDQAKEITETMEKKLVEETK---QLELDLNDERL 1077

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 38/248 (15%), Positives = 88/248 (35%), Gaps = 14/248 (5%)

Query: 50   KVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEK---- 105
            +    ++  A    + LEQ+    + +  N  ++ L A  +L  EA+        K    
Sbjct: 867  QRTKERQQKAEAELKELEQKHT-QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 106  ----HVLLKKLRDALESLRGRVAGRNK--DDVEEAIAMVEALAVQLTQREGELIQEKAEV 159
                H +  ++ +  E  +   A + K    + +    +E       + + E +    ++
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 160  KKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEE 219
            KK+ D +    +   KL  E +      +      +   EE  +   ++ +   +    E
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKL-LEERVSDLTTNLAEEEEKAKNLTKL-KNKHESMISE 1043

Query: 220  LMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSD 279
            L   +++  + +   +      +E E   L  Q+AE       L+ +LA  +   +    
Sbjct: 1044 LEVRLKKEEKSRQELE-KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 280  SYELDGSE 287
              E + S+
Sbjct: 1103 RLEDETSQ 1110

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 24/233 (10%)

Query: 53   SMKEVVARETAQLLEQQKRL-SVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKK 111
             ++        ++ + +  +  + D  NK  K      +   +     A   EK   L K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 112  LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
            L++  ES+   +    +  +++     + L     + EGE      ++ +L   + +   
Sbjct: 1033 LKNKHESMISEL----EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 172  DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIK 231
               K  +EE   A A +E   +      + ++E E            +L ++++  +  +
Sbjct: 1089 QLAKK-EEELQAALARLEDETSQKNNALKKIRELES--------HISDLQEDLESEKAAR 1139

Query: 232  MLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELD 284
               +  +  D+  EL AL+ +L +              + + E + SD  + D
Sbjct: 1140 NKAE-KQKRDLSEELEALKTELEDTLD---------TTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 38/216 (17%), Positives = 85/216 (39%), Gaps = 22/216 (10%)

Query: 67   EQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGR 126
            E++ +    +L    E+   A A+L E  +       EK++L +KL+   E         
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA------ 909

Query: 127  NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186
                  EA  M   LA +  + E  L + +A +++  +  ++   + KK+  +       
Sbjct: 910  ------EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD-LEE 962

Query: 187  EIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHEL 246
            ++E   AA Q+++      +        +  E+ +  +++  +   L +  K   +E  +
Sbjct: 963  QLEEEEAARQKLQLEKVTADGK-----IKKMEDDILIMED--QNNKLTKERK--LLEERV 1013

Query: 247  RALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYE 282
              L   LAE+ + +  L K     + +  +L    +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 76/436 (17%), Positives = 125/436 (28%), Gaps = 165/436 (37%)

Query: 7   DFG-NTMQ---KDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPK-VLSMKEV---V 58
           DF     Q   KD +       VF       +    N    D +D PK +LS +E+   +
Sbjct: 8   DFETGEHQYQYKDILS------VFE----DAFV--DNFDCKDVQDMPKSILSKEEIDHII 55

Query: 59  ARETAQ---------LLEQQKRLSVRDLANKF-EKGLAA-----AAKLSEEAKLREAA-- 101
             + A          LL +Q+ +       KF E+ L        + +  E +       
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 102 --------------SLEK-HV----LLKKLRDALESLR--------GRVAG--------- 125
                            K +V       KLR AL  LR        G V G         
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALD 169

Query: 126 --------------------RNKDDVEEAIAMVEALAVQLTQ-------REGELIQEKAE 158
                               +N +  E  + M++ L  Q+             +      
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 159 VK-KLADFLKKASEDAKK--LV-----DEE--RAFA---------R-AEIESARAAVQRV 198
           ++ +L   LK  S+  +   LV     + +   AF          R  ++    +A    
Sbjct: 230 IQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 199 EESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDME-HELR--ALRIQLAE 255
             SL  H                 EV+      +L    K +D    +L    L      
Sbjct: 288 HISLDHHSMT--------LTP--DEVKS-----LL---LKYLDCRPQDLPREVLTTNPRR 329

Query: 256 KSKCSLLLRKELAM--------SKRIEEKLSDSYE-LDGSEALGSY--LRIKPCSNNGPE 304
            S  +  +R  LA           ++   +  S   L+ +E    +  L + P S + P 
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 305 --LSKCSIQWYRVPSE 318
             L   S+ W+ V   
Sbjct: 390 ILL---SLIWFDVIKS 402

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 18/173 (10%)

Query: 61   ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
                LL  +KR  + +       GL          KLR+  +      +K L+ +L    
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGL---------KKLRDTEA-----QVKDLQVSLAQKN 1947

Query: 121  GRVAGRNKDDVEEAIAMV--EALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVD 178
              +  +N+    + +  +  +  A ++ Q++   +Q + +V+     ++K    A     
Sbjct: 1948 RELDVKNE-QANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006

Query: 179  EERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIK 231
            E     R E+E    A   ++    E      A  K       +E     R  
Sbjct: 2007 EPTGPLREEVEQLENAANELKLKQDEIVATITALEKS-IATYKEEYATLIRET 2058

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 38   ANNQVVDGKDDPKVLSMKEVVA-RETAQLL-----EQQKRLSVRDLANKFEKGLAAAAKL 91
               QV D +      + +  V   +  Q L     +QQ     +  A + +  L    K 
Sbjct: 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKE 1991

Query: 92   SEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEE--AIAMVEALAVQLTQRE 149
                K++  A LEK      LR+ +E L            E    I  +E       +  
Sbjct: 1992 IAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051

Query: 150  GELIQEKAEVKKLADFLKKASEDAKKLVD 178
              LI+E  ++K  +  +K   + +  L+D
Sbjct: 2052 ATLIRETEQIKTESSKVKNKVDRSIALLD 2080

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 155 EKAEVKKLADFLKKASEDAKKLVDEERAFA-RAEIE 189
           EK  +KKL   LK  ++D+        A A +A +E
Sbjct: 18  EKQALKKLQASLKLYADDSAP------ALAIKATME 47

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 56   EVVARETAQLLEQQKRL--SVRDLANKFEKGLAAAAKLSEEAKLREAASL--EKHVLLKK 111
            E   +E A+ L  + +    +  L  K+ + L      +    +   ++   +    ++ 
Sbjct: 864  EKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQA 923

Query: 112  LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
                LE+  G      +    ++ + + ++  QLT+     + E  E  +   F  +   
Sbjct: 924  KLKNLEAFDGEC----QSLEGQSNSDLLSILAQLTELNYNGVPELTE--RKDTFFAQQWT 977

Query: 172  DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQ 207
              K   +  +      + +    +Q++E+    H  
Sbjct: 978  GVKSSAETYKN----TLLAELERLQKIEDLHHHHHH 1009

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	494
4dix_A	230	Plectin-related protein; PH domain, IG domain, mal	100.0
4djg_A	52	Plectin-related protein; coiled-coil, four helix b	99.94
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.88
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.75
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	80.45

>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=3.6e-126  Score=892.86  Aligned_cols=224  Identities=75%  Similarity=1.240  Sum_probs=211.8

Q ss_pred             hhhhcccCCceeeccccccCceeEEeeCCCCCCCCCCceeeEEEeccCCCccccccccccccccCCCCcccceeeeeeec
Q 011054          271 KRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITY  350 (494)
Q Consensus       271 kr~~en~~~~yeL~G~e~LGS~L~i~~~~d~~~dlSkcsiQW~Rv~~~gsk~e~IsGAtk~~YAPEP~DVGr~LqadI~~  350 (494)
                      .+.+||.+++|+|||+|+|||+|+|+||+|++||||+|+|||||+++|||++|+|||||||+||||||||||+|||||++
T Consensus         5 ~~~e~n~~~~y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~   84 (230)
T 4dix_A            5 SKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY   84 (230)
T ss_dssp             --------CCEEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE
T ss_pred             cccccCCCcceeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeecCCCCCCCCchhHHHHHhhcCCceeeEEEEeecCCCCCCCceEEEEecceeEEeecCceeeehhhcccccc
Q 011054          351 NGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVVVTQMNGVDHPSESIHVLHVGKMRIKLCKGKMTIAKEYYSTSMQ  430 (494)
Q Consensus       351 ~g~k~~~~T~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q~NG~d~~s~s~hvl~igk~RikL~KG~~t~AkE~YSssMQ  430 (494)
                      ||++++++|+|||||||||++|||+|+||+++||||||+||||+||+|+|+||||||||||||||||+|+|||+||++||
T Consensus        85 ~G~k~t~~T~gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQ  164 (230)
T 4dix_A           85 DGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQ  164 (230)
T ss_dssp             TTEEEEEEEEEEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCE
T ss_pred             CCcEEEEEecCCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcchhhhhhhccccCCceEEEEeeccccchhHHHHHHhhhcccceeecCCCCCCCCCC
Q 011054          431 LCGVRGGGNAAAQALFWQAKKGVSFVLAFESERERNATIMLARRLAFDCNIMLAGPEDRSPLGS  494 (494)
Q Consensus       431 LCGvRGgg~AAa~AlfWq~rkglS~vL~fESeReRNaAImLARrfA~DCNv~l~gP~d~~~~g~  494 (494)
                      |||||||||||||||||||||||||||+||||||||||||||||||+||||+|+||+|++|+|+
T Consensus       165 LCGvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA~DcNv~lagp~d~~~~~~  228 (230)
T 4dix_A          165 LCGVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACDCNVTLAGPEDRTETGQ  228 (230)
T ss_dssp             EEECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCBSTTCCC----
T ss_pred             eeeccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHhccCceEEecCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}

Probab=99.94  E-value=3.3e-28  Score=186.43  Aligned_cols=52  Identities=98%  Similarity=1.230  Sum_probs=48.6

Q ss_pred             hhhcchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHhhhhhhhh
Q 011054          100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE  151 (494)
Q Consensus       100 va~Ler~vLLKkLr~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~E  151 (494)
                      +|+||||+||||||++||+|+|||+|||||||||||||||||||||||||+|
T Consensus         1 ~a~Ler~vLlKkLr~~Le~L~GRvaGrnkddveeaismVealavqltqrE~E   52 (52)
T 4djg_A            1 ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE   52 (52)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             CcchhHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5899999999999999999999999999999999999999999999999997

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.88  E-value=0.42  Score=59.16  Aligned_cols=139  Identities=14%  Similarity=0.152  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011054          129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED---AKKLVDEERAFARAEIESARAAVQRVEESLQEH  205 (494)
Q Consensus       129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD---AkkiV~eeRa~A~aEIE~ArAaV~Rve~al~Eq  205 (494)
                      +-+.+|-.-|+.|-.+|+..+-+|.+.+.|..++-.-+...+.+   -|+.|+++.+.+..+-+.+.+--..+++-|.+-
T Consensus      1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A         1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34678899999999999999999999988888765555443333   344555444444333222222222233333322


Q ss_pred             HHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 011054          206 EQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMS  270 (494)
Q Consensus       206 e~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~KEL~~~  270 (494)
                      +-.  .-.+++++++.++..+|.. ++-..=.++-+.|.+|..|+.++.+...+.-.|+.|++..
T Consensus      2007 ~Pa--~Pkr~~l~~ae~~l~~~~~-~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A         2007 EPT--GPLREEVEQLENAANELKL-KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211  2223355555555554432 1111123455678899999999999988888888887643

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=89.75  E-value=1.7  Score=48.67  Aligned_cols=77  Identities=12%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHH
Q 011054          185 RAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLR  264 (494)
Q Consensus       185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EvqEARRIKmLH~PSKvMDmE~El~~LR~ql~eKs~~~v~L~  264 (494)
                      ..|.+++.+-|..+++-+++.+...+...+ +.+.|.++.++..  .-|+  .||-+|+.|...||+|+.+-........
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~k-e~~~lee~~~~~~--~~L~--~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYK--HETE--QLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555554433333 2333333322222  1333  8899999999999999988776555555


Q ss_pred             HH
Q 011054          265 KE  266 (494)
Q Consensus       265 KE  266 (494)
                      ++
T Consensus      1051 ~~ 1052 (1080)
T 2dfs_A         1051 KE 1052 (1080)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.45  E-value=28  Score=34.64  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             cccHHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhhhccc
Q 011054          240 MDMEHELRALRIQLAEKSKCSLLLRKELA-MSKRIEEKL  277 (494)
Q Consensus       240 MDmE~El~~LR~ql~eKs~~~v~L~KEL~-~~kr~~en~  277 (494)
                      ..||..++.-++++.|-..+--++.+|+. +.....+|.
T Consensus       547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~  585 (597)
T 3oja_B          547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP  585 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34566666666666666666666666664 444445444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00