Citrus Sinensis ID: 011059

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----

METLNFPHETQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQKGGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT

ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHEEEEEccHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccc

ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEHHHHcHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccHHHHHHHHHHHccccHEEEcHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccc

metlnfphetqVFKSAAVSRLLLLALIVLWRAllspydtsaplnpnclvdphqqqhspnssigsriessivwdSVYFVRIAQCgyeyeqsyaflpllpAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLfcfnpasifytsiYSESLYALFSVGGLYYLMSGALNISVLWLAISGcarsngvlnagYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNmclgrspdemrpwckakvpLLYNFIQshywgvgflryfqfkqlpnfllaspMLTLALCSIIHYvksqpelvyslgfrasnegkeyapvffssgaapksnsapvaekplskihgtqnLRLRKQMqkggnpalvpvdcgstmksgylspavlpfIFHLGFMAATAFFVMHVQVStrflsaspplywfASYLImspvmdkrWGYLIWTYCAAYILIGSLlfsnfypft

metlnfphetqVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSnsapvaekplskihgTQNLRLRKQMQKGGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT

METLNFPHETQVFKsaavsrllllalivlwrallSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQKGGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT

**********QVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCL*****************IESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEYAPVFF****************************************LVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYP**

***********VFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQKGGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT

********ETQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDP*************RIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEYAPVFFSSGA**********EKPLSKIHGTQNLRLRKQMQKGGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT

***LNFPHETQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRA************************************QNLRLRKQMQ***NPALVPVDCG*TMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		494	2.2.26 [Sep-21-2011]
Q9NUD9		493	GPI mannosyltransferase 2	yes	no	0.795	0.797	0.281	9e-43
Q7TPN3		493	GPI mannosyltransferase 2	yes	no	0.785	0.787	0.276	1e-42
Q5KR61		492	GPI mannosyltransferase 2	yes	no	0.795	0.798	0.270	6e-42
Q9V7W1		449	GPI mannosyltransferase 2	yes	no	0.825	0.908	0.268	1e-34
Q2GSI6		471	GPI mannosyltransferase 2	N/A	no	0.627	0.658	0.283	2e-27
Q290J8		452	GPI mannosyltransferase 2	yes	no	0.475	0.519	0.322	2e-26
Q4I0K3		423	GPI mannosyltransferase 2	yes	no	0.688	0.803	0.278	6e-26
P0CP62		423	GPI mannosyltransferase 2	yes	no	0.550	0.643	0.316	1e-25
P0CP63		423	GPI mannosyltransferase 2	N/A	no	0.550	0.643	0.316	2e-25
Q6C216		357	GPI mannosyltransferase 2	yes	no	0.526	0.728	0.31	2e-23

>sp\|Q9NUD9\|PIGV_HUMAN GPI mannosyltransferase 2 OS=Homo sapiens GN=PIGV PE=1 SV=1	Back alignment and function desciption

 Score =  175 bits (443), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 213/480 (44%), Gaps = 87/480 (18%)

Query: 7   PHETQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRI 66
           P   +V + A   R+L L L  L+ A++  +   A   P           +P+  +   +
Sbjct: 6   PSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRL---------APSGFVDQLV 56

Query: 67  ESSIV----WDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVL 122
           E  +     WD+ +F+ IA+ GY YE ++AF P  P    L+   +L PL G++  R+ L
Sbjct: 57  EGLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFP-LALLVGTELLRPLRGLLSLRSCL 115

Query: 123 GLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYAL 182
            ++   ++ + F+ AAV  + L  ++L  P  +  A+LLFC +PA++F  + YSE+L+AL
Sbjct: 116 LISVASLNFLFFMLAAVALHDLGCLVLHCPHQSFYAALLFCLSPANVFLAAGYSEALFAL 175

Query: 183 FSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAM 242
            +   +  L  G +  SVL  A +   RSNG+++ G+         + +L +        
Sbjct: 176 LTFSAMGQLERGRVWTSVLLFAFATGVRSNGLVSVGFLMHSQCQGFFSSLTMLNPLRQLF 235

Query: 243 WILVCGALRCICIFAPFISFQVYGYFNMCLGRS----PDEM----------------RPW 282
            ++    L    +  PF  FQ Y Y   CL  S    P+ +                 PW
Sbjct: 236 KLMASLFLSVFTLGLPFALFQYYAYTQFCLPGSARPIPEPLVQLAVDKGYRIAEGNEPPW 295

Query: 283 CKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYS 342
           C   VPL+Y++IQ  YW VGFL+Y++ KQ+PNFLLA+P+  L   +   YV + P L  +
Sbjct: 296 CFWDVPLIYSYIQDVYWNVGFLKYYELKQVPNFLLAAPVAILVAWATWTYVTTHPWLCLT 355

Query: 343 LGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQKGGNPALVP 402
           LG + S   K                     EKP                          
Sbjct: 356 LGLQRSKNNK-------------------TLEKP-------------------------- 370

Query: 403 VDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPP-LYWFASYLIMS 461
                    G+LSP V  ++ H   +       MHVQV TRFL +S P +YWF ++L+  
Sbjct: 371 -------DLGFLSPQVFVYVVHAAVLLLFGGLCMHVQVLTRFLGSSTPIMYWFPAHLLQD 423

Alpha-1,6-mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis. Transfers the second mannose to the glycosylphosphatidylinositol during GPI precursor assembly.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp\|Q7TPN3\|PIGV_MOUSE GPI mannosyltransferase 2 OS=Mus musculus GN=Pigv PE=2 SV=2	Back alignment and function description

>sp\|Q5KR61\|PIGV_RAT GPI mannosyltransferase 2 OS=Rattus norvegicus GN=Pigv PE=2 SV=1	Back alignment and function description

>sp\|Q9V7W1\|PIGV_DROME GPI mannosyltransferase 2 OS=Drosophila melanogaster GN=veg PE=2 SV=1	Back alignment and function description

>sp\|Q2GSI6\|GPI18_CHAGB GPI mannosyltransferase 2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=GPI18 PE=3 SV=1	Back alignment and function description

>sp\|Q290J8\|PIGV_DROPS GPI mannosyltransferase 2 OS=Drosophila pseudoobscura pseudoobscura GN=veg PE=3 SV=1	Back alignment and function description

>sp\|Q4I0K3\|GPI18_GIBZE GPI mannosyltransferase 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GPI18 PE=3 SV=1	Back alignment and function description

>sp\|P0CP62\|GPI18_CRYNJ GPI mannosyltransferase 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GPI18 PE=3 SV=1	Back alignment and function description

>sp\|P0CP63\|GPI18_CRYNB GPI mannosyltransferase 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GPI18 PE=3 SV=1	Back alignment and function description

>sp\|Q6C216\|GPI18_YARLI GPI mannosyltransferase 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPI18 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		494
225435692		497	PREDICTED: GPI mannosyltransferase 2 [Vi	0.993	0.987	0.678	0.0
255573720		500	conserved hypothetical protein [Ricinus	0.995	0.984	0.649	0.0
224073180		483	predicted protein [Populus trichocarpa]	0.959	0.981	0.672	1e-180
297849556		494	hypothetical protein ARALYDRAFT_471336 [	0.959	0.959	0.624	1e-174
42561929		489	phosphatidylinositol glycan, class V [Ar	0.957	0.967	0.615	1e-171
449462575		496	PREDICTED: GPI mannosyltransferase 2-lik	0.979	0.975	0.631	1e-171
3157950		492	Contains similarity to hypothetical prot	0.959	0.963	0.602	1e-165
400131568		548	T4.7 [Malus x robusta]	0.886	0.799	0.660	1e-161
357475203		486	GPI mannosyltransferase [Medicago trunca	0.953	0.969	0.609	1e-161
356519786		488	PREDICTED: GPI mannosyltransferase 2-lik	0.949	0.961	0.603	1e-159

>gi\|225435692\|ref\|XP_002283435.1\| PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera] gi\|297746434\|emb\|CBI16490.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/500 (67%), Positives = 403/500 (80%), Gaps = 9/500 (1%)

Query: 1   METLNFP---HETQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHS 57
           M T NF    H   + K+A  SRL LLALI+ WR+L  PYDTSAPLNPNCL    Q   +
Sbjct: 1   MNTSNFQKSNHICIILKTAVCSRLFLLALIIFWRSLFEPYDTSAPLNPNCLSLESQPADT 60

Query: 58  ---PNSSIGSRIESSIVWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIG 114
              P   IG+ IE SIVWD+VYFVRIAQCGYEYEQSYAFLPLLP     LSR+V APLI 
Sbjct: 61  VLWPK--IGAAIEGSIVWDAVYFVRIAQCGYEYEQSYAFLPLLPICISFLSRTVFAPLIP 118

Query: 115 VIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSI 174
           +IG+RAVLGL+GY+++N+AF+ AAVYFY+LSV+ILKD +AA  AS+LFCFNPASIFY+SI
Sbjct: 119 LIGHRAVLGLSGYVLNNIAFVLAAVYFYKLSVIILKDKEAAFRASILFCFNPASIFYSSI 178

Query: 175 YSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFL 234
           YSESLYAL SVGG+Y+L+S + N++VLWLA+SG ARSNGVLNAGYFCFQTMH+AY+A+FL
Sbjct: 179 YSESLYALLSVGGVYHLISSSNNVAVLWLALSGSARSNGVLNAGYFCFQTMHEAYEAIFL 238

Query: 235 KKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFI 294
           KKR +L++ +L+ G LRC+CIF PF++FQ YGY+N+CLG  PDEM PWCKA+VPL+YN++
Sbjct: 239 KKRAYLSVQVLLVGVLRCLCIFVPFVAFQAYGYYNICLGHFPDEMSPWCKARVPLVYNYL 298

Query: 295 QSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHYVKSQPELVYSLGFRASNEGKEY 354
           QSHYWGVGFLRYFQ KQLPNFLLASP+L+LALCSIIHY++ QPE+ +SLGFRAS E K  
Sbjct: 299 QSHYWGVGFLRYFQLKQLPNFLLASPILSLALCSIIHYMRLQPEIFFSLGFRASPEEKNS 358

Query: 355 APVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQKGGNPALVPVDCGSTMKSGYL 414
           A V FS GA  +SNS   ++K + +     NLR RKQ+Q G   A  P  C S+ + GYL
Sbjct: 359 AAVLFSLGADKRSNSDQFSKKSIPQTQENHNLRRRKQLQ-GEESAASPTGCKSSARLGYL 417

Query: 415 SPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSPVMDKRWGYLIWT 474
           S  VLPF+ HLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYL++SP   +RWGYLIW 
Sbjct: 418 SAFVLPFVLHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLMVSPGAGRRWGYLIWA 477

Query: 475 YCAAYILIGSLLFSNFYPFT 494
           Y AAYIL+GSLLFSNFYPFT
Sbjct: 478 YSAAYILLGSLLFSNFYPFT 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255573720\|ref\|XP_002527781.1\| conserved hypothetical protein [Ricinus communis] gi\|223532816\|gb\|EEF34591.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224073180\|ref\|XP_002304011.1\| predicted protein [Populus trichocarpa] gi\|222841443\|gb\|EEE78990.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297849556\|ref\|XP_002892659.1\| hypothetical protein ARALYDRAFT_471336 [Arabidopsis lyrata subsp. lyrata] gi\|297338501\|gb\|EFH68918.1\| hypothetical protein ARALYDRAFT_471336 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42561929\|ref\|NP_172652.2\| phosphatidylinositol glycan, class V [Arabidopsis thaliana] gi\|46931244\|gb\|AAT06426.1\| At1g11880 [Arabidopsis thaliana] gi\|50897228\|gb\|AAT85753.1\| At1g11880 [Arabidopsis thaliana] gi\|332190687\|gb\|AEE28808.1\| phosphatidylinositol glycan, class V [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449462575\|ref\|XP_004149016.1\| PREDICTED: GPI mannosyltransferase 2-like [Cucumis sativus] gi\|449502191\|ref\|XP_004161569.1\| PREDICTED: GPI mannosyltransferase 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|3157950\|gb\|AAC17633.1\| Contains similarity to hypothetical protein C18b11.05 gb\|Z50728 from S. pombe. EST gb\|H76601 comes from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|400131568\|emb\|CCH50968.1\| T4.7 [Malus x robusta]	Back alignment and taxonomy information

>gi\|357475203\|ref\|XP_003607887.1\| GPI mannosyltransferase [Medicago truncatula] gi\|85719351\|gb\|ABC75356.1\| Protein of unknown function DUF409 [Medicago truncatula] gi\|355508942\|gb\|AES90084.1\| GPI mannosyltransferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356519786\|ref\|XP_003528550.1\| PREDICTED: GPI mannosyltransferase 2-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		494
TAIR\|locus:2008970		489	AT1G11880 [Arabidopsis thalian	0.902	0.912	0.623	7.2e-155
UNIPROTKB\|J9P6Y3		470	PIGV "Uncharacterized protein"	0.441	0.463	0.301	1.2e-47
UNIPROTKB\|J9NWG9		493	PIGV "Uncharacterized protein"	0.441	0.442	0.301	2.4e-47
UNIPROTKB\|J9P185		493	PIGV "Uncharacterized protein"	0.441	0.442	0.301	2.4e-47
DICTYBASE\|DDB_G0280891		626	pigV "phosphatidylinositol gly	0.372	0.293	0.312	6.5e-46
UNIPROTKB\|Q9NUD9		493	PIGV "GPI mannosyltransferase	0.417	0.417	0.309	7.8e-46
UNIPROTKB\|E1B9Z8		493	PIGV "Uncharacterized protein"	0.400	0.401	0.315	1.7e-45
UNIPROTKB\|H9KYS4		512	PIGV "Uncharacterized protein"	0.398	0.384	0.311	9.4e-45
MGI\|MGI:2442480		493	Pigv "phosphatidylinositol gly	0.417	0.417	0.317	1.2e-44
RGD\|1309526		492	Pigv "phosphatidylinositol gly	0.429	0.430	0.289	5.1e-43

TAIR\|locus:2008970 AT1G11880 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 288/462 (62%), Positives = 359/462 (77%)

Query:    36 PYDTSAPLNPNCLVDPHQQQHSPN--SSIGSR-IESSIVWDSVYFVRIAQCGYEYEQSYA 92
             PYDTSA LNP CL   H++   P   ++  SR +E+S+VWDSVYF+RI +CGYEYEQ+YA
Sbjct:    41 PYDTSAALNPPCLY--HKEDSFPFLVANAASRSLENSVVWDSVYFLRITECGYEYEQTYA 98

Query:    93 FLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDP 152
             FLPLLP F  LLSR+V APL+ +IG RAV+ L+G+ VSN+AF+FAA+Y +R+SV+ILKD 
Sbjct:    99 FLPLLPFFISLLSRTVFAPLVPLIGLRAVMVLSGFTVSNLAFIFAAIYLFRVSVIILKDT 158

Query:   153 DAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSN 212
             +A+  AS++FCFNPASIFY+SIYSESLYALFS+GG+Y+L+SG  N+ VLW A+SGCARSN
Sbjct:   159 EASFRASIIFCFNPASIFYSSIYSESLYALFSIGGVYHLLSGTSNVGVLWFALSGCARSN 218

Query:   213 GVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGALRCICIFAPFISFQVYGYFNMCL 272
             G+LNAGY CFQTMH+AY+AL+ K+R +LAM + + G LRCICI  PF++FQ YGY+N+C 
Sbjct:   219 GILNAGYICFQTMHRAYEALYQKRRAYLAMQVFIAGFLRCICICLPFVAFQAYGYYNICH 278

Query:   273 GRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCSIIHY 332
             G + DE+RPWCK ++PLLYNFIQSHYWGVGFL+YFQFKQLPNFLLASP+L+LA+CSI+ Y
Sbjct:   279 GHTRDEVRPWCKGRIPLLYNFIQSHYWGVGFLKYFQFKQLPNFLLASPILSLAVCSIMSY 338

Query:   333 VKSQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQM 392
             +KS+PEL  SLGF+A+ + K  A   +S     K    P  +   ++  G  ++R RK  
Sbjct:   339 MKSRPELFISLGFQATEKEKRSAARLYSL----KDAVEPSVKTSTNE--GNHDIRQRKPS 392

Query:   393 QKGGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLY 452
              K      V     +  KSGYLS  V PFI HL FM  TAFF+MHVQV+TRFLSASPPLY
Sbjct:   393 SKKD----VTGTKVAPEKSGYLSADVFPFIVHLSFMVTTAFFIMHVQVATRFLSASPPLY 448

Query:   453 WFASYLIMSPVMDKRWGYLIWTYCAAYILIGSLLFSNFYPFT 494
             WFAS LI SP   K WGYLIW+YCAAYIL+G+LLFSNFYPFT
Sbjct:   449 WFASSLIGSPKHSK-WGYLIWSYCAAYILLGTLLFSNFYPFT 489

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

UNIPROTKB\|J9P6Y3 PIGV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NWG9 PIGV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P185 PIGV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0280891 pigV "phosphatidylinositol glycan, class V" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NUD9 PIGV "GPI mannosyltransferase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B9Z8 PIGV "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|H9KYS4 PIGV "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:2442480 Pigv "phosphatidylinositol glycan anchor biosynthesis, class V" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1309526 Pigv "phosphatidylinositol glycan anchor biosynthesis, class V" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024752001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (497 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017107001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (541 aa)	•	•	0.943
	GSVIVG00034476001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (438 aa)	•	•	0.913
	GSVIVG00015707001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (333 aa)	•		0.899
	GSVIVG00015680001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (80 aa)	•	•	0.815
	GSVIVG00027968001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (437 aa)	•		0.800
	GSVIVG00015572001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (243 aa)	•		0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		494
pfam04188		412	pfam04188, Mannosyl_trans2, Mannosyltransferase (P	1e-102
COG5542		420	COG5542, COG5542, Predicted integral membrane prot	3e-20
pfam04188		412	pfam04188, Mannosyl_trans2, Mannosyltransferase (P	2e-13

>gnl\|CDD\|217951 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V))	Back alignment and domain information

 Score =  312 bits (801), Expect = e-102
 Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 8/325 (2%)

Query: 11  QVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSI 70
           ++   A + R L L L +L      P  TS  LNP C   P       N  + +     +
Sbjct: 4   ELTLYAVLCRSLQLLLTILTPIRQFPTSTSLALNPPCSNSPSLVNSYWNRYLWN---KLL 60

Query: 71  VWDSVYFVRIAQCGYEYEQSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVS 130
            WDSVYF++IA+ GY +E  YAF PL P F  LL +S   PL+ ++G R+ +  + + +S
Sbjct: 61  SWDSVYFLKIAENGYLFEHEYAFSPLWPFFISLLIKSNNDPLVHLLGLRSCIENSLFYLS 120

Query: 131 NVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYY 190
            + F  AA    +L   IL     +   SLLFC +PA+IF +SIYSESL+ALFS  G++ 
Sbjct: 121 ILFFFLAAKALSQLIRQILFARTISFYTSLLFCLSPAAIFLSSIYSESLFALFSFVGIWS 180

Query: 191 LMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCGAL 250
           L  G     VLW A+S   RSNG+ + G+     +   + +L    ++   +  +    L
Sbjct: 181 LECGIDISWVLWFALSTIMRSNGLASLGFSNCVLLGIYFISLIELTKNRKFVKAICFPFL 240

Query: 251 RCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFK 310
            C  IF PF+ FQ YGY   C GR      PWCK+++PLLY++IQSHYW VGFL+Y+   
Sbjct: 241 SCSLIFLPFLYFQYYGYKTFCPGRG-----PWCKSQLPLLYSYIQSHYWNVGFLKYWTLN 295

Query: 311 QLPNFLLASPMLTLALCSIIHYVKS 335
            +PNFL A P + L + S I+Y K 
Sbjct: 296 NIPNFLFAVPNIILLIYSSIYYSKG 320

This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI. Length = 412

>gnl\|CDD\|227829 COG5542, COG5542, Predicted integral membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|217951 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V))	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		494
PF04188		443	Mannosyl_trans2: Mannosyltransferase (PIG-V)); Int	100.0
KOG2647		444	consensus Predicted Dolichyl-phosphate-mannose-pro	100.0
COG5542		420	Predicted integral membrane protein [Function unkn	100.0
PF13231		159	PMT_2: Dolichyl-phosphate-mannose-protein mannosyl	98.67
TIGR03766		483	conserved hypothetical integral membrane protein.	98.26
PF02366		245	PMT: Dolichyl-phosphate-mannose-protein mannosyltr	97.92
TIGR03663		439	conserved hypothetical protein TIGR03663. Members	97.37
COG1807		535	ArnT 4-amino-4-deoxy-L-arabinose transferase and r	97.29
PF09594		241	DUF2029: Protein of unknown function (DUF2029); In	96.97
PRK13279		552	arnT 4-amino-4-deoxy-L-arabinose transferase; Prov	96.85
PLN02816		546	mannosyltransferase	96.64
PLN02841		440	GPI mannosyltransferase	96.5
PF03901		418	Glyco_transf_22: Alg9-like mannosyltransferase fam	96.43
PF09852		449	DUF2079: Predicted membrane protein (DUF2079); Int	96.41
PF10131		616	PTPS_related: 6-pyruvoyl-tetrahydropterin synthase	95.36
PF02516		483	STT3: Oligosaccharyl transferase STT3 subunit; Int	95.34
KOG3893		405	consensus Mannosyltransferase [Carbohydrate transp	94.93
PF06728		382	PIG-U: GPI transamidase subunit PIG-U; InterPro: I	94.9
COG1287		773	Uncharacterized membrane protein, required for N-l	94.49
PF11028		178	DUF2723: Protein of unknown function (DUF2723); In	94.14
TIGR03459		470	crt_membr carotene biosynthesis associated membran	94.13
KOG3359		723	consensus Dolichyl-phosphate-mannose:protein O-man	94.06
COG1928		699	PMT1 Dolichyl-phosphate-mannose--protein O-mannosy	92.43
COG4346		438	Predicted membrane-bound dolichyl-phosphate-mannos	90.68
COG3463		458	Predicted membrane protein [Function unknown]	90.49
PF04922		379	DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006	90.48
PF05007		259	Mannosyl_trans: Mannosyltransferase (PIG-M); Inter	84.75
COG5305		552	Predicted membrane protein [Function unknown]	82.77
PF03155		469	Alg6_Alg8: ALG6, ALG8 glycosyltransferase family;	81.44

>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface	Back alignment and domain information

Probab=100.00  E-value=2.6e-95  Score=773.26  Aligned_cols=432  Identities=43%  Similarity=0.757  Sum_probs=360.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccccHHHHHHHhhcCCCcc
Q 011059            9 ETQVFKSAAVSRLLLLALIVLWRALLSPYDTSAPLNPNCLVDPHQQQHSPNSSIGSRIESSIVWDSVYFVRIAQCGYEYE   88 (494)
Q Consensus         9 ~~~vl~~~i~sR~~~lll~~l~~~~~~~~DtS~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~WDa~~f~~IA~~GY~~e   88 (494)
                      +++|++.+++||+++++++++++...-|+||+..+.+++.+++.   ...++...+.++++.|||++||++||+|||++|
T Consensus         1 ~~~~~~~~~~~r~l~lll~~l~~~~~~~~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~l~rWDa~~F~~IA~~GY~~E   77 (443)
T PF04188_consen    1 RKGVVKFFVLSRILQLLLQILFPGLLFDTSTSLLLDPPCSSAPS---SLIDSFVNRLLWGLVRWDAVYFLRIAEHGYSYE   77 (443)
T ss_pred             CCcccccchHHHHHHHHHHHHHhCcCCCCChHhhcCCCcccCCC---cchHhHHHHHHhcccchhHHHHHHHHHhCCCcc
Confidence            35789999999999999999998666667777666665531221   111334567788899999999999999999999


Q ss_pred             cccccccchHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhhcchh
Q 011059           89 QSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRLSVMILKDPDAALCASLLFCFNPAS  168 (494)
Q Consensus        89 ~~~AFfPl~P~lvr~l~~~~~~~l~~~~~~~~~~~~~~~lvs~~~~~~a~~~Ly~L~~~~~~~~~~a~~aall~~~~Pas  168 (494)
                      |++||||+||.++|.+++....++.+.++.......+|+++||++++++++++|+++++++++++.|.+++++++++||+
T Consensus        78 ~~~AFfPl~P~lvr~~~~~~~~~l~~~l~~~~~l~~~~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~Pas  157 (443)
T PF04188_consen   78 HEWAFFPLYPLLVRLLSKSLLSPLYGLLSVGSALLNSGILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPAS  157 (443)
T ss_pred             ccccccCcHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHH
Confidence            99999999999999999544444444444445566789999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcchHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011059          169 IFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISGCARSNGVLNAGYFCFQTMHQAYDALFLKKRHFLAMWILVCG  248 (494)
Q Consensus       169 if~sa~YsEslF~~ls~~gl~~~~~~~~~~a~~~~~lA~~~RsnGil~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  248 (494)
                      +|++++||||+|++++++|++.+++++++.|++++++|+++||||++++++++++.+...+....++++..+.++.++..
T Consensus       158 iF~sa~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~  237 (443)
T PF04188_consen  158 IFLSAPYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIYYLDLRQLRRQRRLVRALISA  237 (443)
T ss_pred             HHhhcCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999998876654333333333456667778


Q ss_pred             HHHHHHHHHhHHHHHHhhhhhccCCCCCCCCcccccccCCcchhHHhhhhhcceeeeeccccCccchHhHHHHHHHHHHH
Q 011059          249 ALRCICIFAPFISFQVYGYFNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLLASPMLTLALCS  328 (494)
Q Consensus       249 ~l~~~iv~~P~~~~q~~~Y~~fC~~~~~~~~r~WC~~~~P~~Ys~VQ~~YWnvGFl~y~~~~niPnFLlA~P~l~l~~~~  328 (494)
                      +++++++++|++++|+|+|.+||+.++.++.+|||++++|++|+|||+||||||||||||+||||||++|+|++++++++
T Consensus       238 ~l~~~~i~~pf~~~q~~~y~~fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvGfl~Yw~~~niPnFlla~P~~~l~~~~  317 (443)
T PF04188_consen  238 ILSGLLIFLPFVLFQYYAYYRFCPPRSFGDEPPWCNNTIPSIYSFVQSHYWNVGFLRYWTLKNIPNFLLALPMLLLSVYS  317 (443)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhccCccchHHHHHHHHccchHHhccccccchHHHHHHHHHHHHHH
Confidence            88899999999999999999999987553457999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchhhhhhccccCcCCCCCccccccCCCCCCCCCCCccCCcccccccchhhHhhhhhhcCCCCCCccccCCCC
Q 011059          329 IIHYVKSQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQKGGNPALVPVDCGST  408 (494)
Q Consensus       329 ~~~~~~~~p~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (494)
                      +++|.+++|+.+.++|...+..+++                           .++          .              
T Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~---------------------------~~~----------~--------------  346 (443)
T PF04188_consen  318 IWYFFRARPWLFSSLGFTYPSSNKR---------------------------SSK----------I--------------  346 (443)
T ss_pred             HHHHHHhCchhhhccccccCccccc---------------------------ccc----------c--------------
Confidence            9999999999888877653222110                           000          0              


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHhhhhhhhhHhhcCChHHHHHHHHhhccc-cccccc--------cceeeeehH--
Q 011059          409 MKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPPLYWFASYLIMSP-VMDKRW--------GYLIWTYCA--  477 (494)
Q Consensus       409 ~~~~~~~~~~~p~v~h~~~l~~~~l~~~HVQI~tR~~S~~P~~YW~~A~~~~~~-~~~~~~--------~~~i~~y~~--  477 (494)
                      .+.+++++.++|+++|+++|+++++|+|||||+||++|+||++||++|+.+.+. .+++++        .|..+.|++  
T Consensus       347 ~~~~~~~~~~~~~i~~~~~L~~~~~~~~HVQVitR~~s~~P~~YW~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (443)
T PF04188_consen  347 PDVGFLSPRVFPYIVHAAFLLVFALFFMHVQVITRFLSSSPVWYWFLAYLLVKGDDKSKKWKPLGDDRIVKLYVIWMICI  426 (443)
T ss_pred             cchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhccccccccccccccccchhhhhHhhHHH
Confidence            011355667899999999999999999999999999999999999999999754 122222        244556777  


Q ss_pred             HHHHHHHHhhcCCCCCC
Q 011059          478 AYILIGSLLFSNFYPFT  494 (494)
Q Consensus       478 ~y~~ig~~Lf~~FlPwT  494 (494)
                      +|++||++||+||||||
T Consensus       427 ~y~~ig~vLf~~FlPpt  443 (443)
T PF04188_consen  427 SYAVIGTVLFANFLPPT  443 (443)
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            99999999999999998

Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane

>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]	Back alignment and domain information

>COG5542 Predicted integral membrane protein [Function unknown]	Back alignment and domain information

>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase	Back alignment and domain information

>TIGR03766 conserved hypothetical integral membrane protein	Back alignment and domain information

>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03663 conserved hypothetical protein TIGR03663	Back alignment and domain information

>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes	Back alignment and domain information

>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional	Back alignment and domain information

>PLN02816 mannosyltransferase	Back alignment and domain information

>PLN02841 GPI mannosyltransferase	Back alignment and domain information

>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2	Back alignment and domain information

>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64	Back alignment and domain information

>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein	Back alignment and domain information

>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells	Back alignment and domain information

>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase	Back alignment and domain information

>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]	Back alignment and domain information

>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria	Back alignment and domain information

>TIGR03459 crt_membr carotene biosynthesis associated membrane protein	Back alignment and domain information

>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG3463 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family	Back alignment and domain information

>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif	Back alignment and domain information

>COG5305 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		494
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 56/413 (13%), Positives = 111/413 (26%), Gaps = 107/413 (25%)

Query: 148 ILKDPDAALCASLLFCFNPASIFYTSIYSESLYALFSVGGLYYLMSGALNISVLWLAISG 207
           I+   DA      LF         +    E +   F    L       +N   L   I  
Sbjct: 54  IIMSKDAVSGTLRLF-----WTLLS--KQEEMVQKFVEEVL------RINYKFLMSPIKT 100

Query: 208 CARSNGVLNAGYFCF-------------------QTMHQAYDALF-LKKRHFLA---M-- 242
             R   ++   Y                      Q   +   AL  L+    +    +  
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 243 ---WILVCGALRCICIFAPFISFQVYGYFNMCLGRSPDE------------MRPWCK--- 284
                +         +      F+++ + N+    SP+                W     
Sbjct: 161 SGKTWVALDVCLSYKVQCKM-DFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 285 --AKVPLLYNFIQSHYWGVGFLRYFQFKQLPNFLL-----ASPMLTLAL---CSIIHYVK 334
             + + L  + IQ+        R  + K   N LL      +     A    C I+  + 
Sbjct: 219 HSSNIKLRIHSIQAE-----LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LT 271

Query: 335 SQPELVYSLGFRASNEGKEYAPVFFSSGAAPKSNSAPVAEKPLSKIHGTQNLRLRKQMQK 394
           ++ + V    F ++      +    S    P        +  L K    +   L +++  
Sbjct: 272 TRFKQVTD--FLSAATTTHISLDHHSMTLTPDE-----VKSLLLKYLDCRPQDLPREVLT 324

Query: 395 GGNPALVPVDCGSTMKSGYLSPAVLPFIFHLGFMAATAFFVMHVQVSTRFLSASPP---- 450
             NP  + +    +++ G    A      H+     T      ++ S   L   P     
Sbjct: 325 -TNPRRLSI-IAESIRDG---LATWDNWKHVNCDKLTTI----IESSLNVL--EPAEYRK 373

Query: 451 LYW-FA----SYLIMSPVMDKRWGYLIWTYCAAYILIG----SLLFSNFYPFT 494
           ++   +    S  I + ++   W  +I       ++      SL+       T
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKEST 425

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		494
3rce_A		724	Oligosaccharide transferase to N-glycosylate PROT;	96.41

>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}	Back alignment and structure

Probab=96.41  E-value=0.079  Score=59.01  Aligned_cols=134  Identities=15%  Similarity=0.031  Sum_probs=91.2

Q ss_pred             cccccHHHHHHHhhc---CCCcc-cccccccchHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011059           69 SIVWDSVYFVRIAQC---GYEYE-QSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRL  144 (494)
Q Consensus        69 l~~WDa~~f~~IA~~---GY~~e-~~~AFfPl~P~lvr~l~~~~~~~l~~~~~~~~~~~~~~~lvs~~~~~~a~~~Ly~L  144 (494)
                      +..=|+-|+.+-|++   |...+ ..-.+-|+++.++..+...+  +.    +    ...+++.+..+.+.++++..|.+
T Consensus        52 ~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g~~~~~l~a~l~~i~--g~----s----l~~v~~~lp~ifg~L~vi~~yll  121 (724)
T 3rce_A           52 ITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSIL--PF----S----FESIILYMSTFFASLIVVPIILI  121 (724)
T ss_dssp             CSCHHHHHHHHHHHHHHHSCCCTTSCCCTTCHHHHHHHHHHHSC--SS----C----HHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             eccCCHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHc--CC----C----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999988753   44322 22355678888888887753  11    1    34666777778888889999999


Q ss_pred             HHHHhCChhHHHHHHHHHhhcchhhhhhhh---cchHHHHHHHHHHHHHH---Hhcc----hHHHHHHHHHhhhcccch
Q 011059          145 SVMILKDPDAALCASLLFCFNPASIFYTSI---YSESLYALFSVGGLYYL---MSGA----LNISVLWLAISGCARSNG  213 (494)
Q Consensus       145 ~~~~~~~~~~a~~aall~~~~Pasif~sa~---YsEslF~~ls~~gl~~~---~~~~----~~~a~~~~~lA~~~RsnG  213 (494)
                      ++++. +++.|..|+++.+++|+-+.=|++   -+|++..++...++++.   .+++    ..++|++.++...+-+.|
T Consensus       122 ~~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~gg  199 (724)
T 3rce_A          122 AREYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSS  199 (724)
T ss_dssp             HHHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcch
Confidence            99876 688999999999999996544543   46664444444444433   3332    235777777777888877

PyMOL of 3rce

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00