Citrus Sinensis ID: 011062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
MLGNTRSSDNPKLPLLGSSDDDISNSHGEEEERRWWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSSEIDGPCPI
ccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccc
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccc
mlgntrssdnpklpllgssdddisnshgeeEERRWWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCgqgfgakqYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILillhqdpniseqAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHwtslgfggaplACSISLWISTLSLAIYILCSkktgrtwegfsFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAglmpnselSTSLIAMCVNTQAICYNFSYGLSAAASTRvsnelgagtidRAKNAMAVTLKLVVLLALIIDLALAFGhniwasfftDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMsseidgpcpi
mlgntrssdnpklpllgssdddisnshgeeeerrwwrkWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAmsseidgpcpi
MLGNTRSSDNPKLPLLGSSDDDISNSHGeeeerrwwrkwrkVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTsciiscffsiiisfLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNamavtlklvvllaliidlalaFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSSEIDGPCPI
*********************************RWWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDV************
************************************RKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDV************
*********NPKLPLLGSSDDD************WWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSS********
*********************************RWWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSSE*******
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MLGNTRSSDNPKLPLLGSSDDDISNSHGEEEERRWWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSSEIDGPCPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query494 2.2.26 [Sep-21-2011]
Q9LUH2477 MATE efflux family protei yes no 0.939 0.972 0.617 1e-167
Q9LUH3469 MATE efflux family protei no no 0.937 0.987 0.603 1e-164
Q9SIA5476 MATE efflux family protei no no 0.874 0.907 0.405 1e-85
Q9SIA3476 MATE efflux family protei no no 0.882 0.915 0.393 2e-84
Q8RWF5483 MATE efflux family protei no no 0.892 0.913 0.392 3e-84
Q9SIA1477 MATE efflux family protei no no 0.949 0.983 0.372 6e-83
Q9SIA4476 MATE efflux family protei no no 0.892 0.926 0.392 9e-82
Q8GXM8476 MATE efflux family protei no no 0.892 0.926 0.367 5e-80
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.947 0.923 0.342 1e-71
Q9USK3539 Uncharacterized transport yes no 0.858 0.786 0.322 7e-61
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function desciption
 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/473 (61%), Positives = 364/473 (76%), Gaps = 9/473 (1%)

Query: 14  PLLGSSDDDISNSHGEEEERRWWRK---WRKVLDVEEAKDQVLFSLPMILTNVSYYAIPL 70
           PLL   DD +    GE+E  R  R     +KV+DVEEAK Q+++SLPMILTNV YY IP+
Sbjct: 9   PLL---DDHVG---GEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPI 62

Query: 71  VSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQ 130
            SVMFA HLG+L+LAGATLANSWA V+GFAF  GLSG+LETLCGQGFGAK+YRMLG+++Q
Sbjct: 63  TSVMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQ 122

Query: 131 TSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRF 190
           +SCI+S  FSI+I+  WF+TE I  LL QDP+IS+QA LYMKY  PGL A+GFLQN LRF
Sbjct: 123 SSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRF 182

Query: 191 LQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250
            QTQSI+ PLV FS +PL I+   AY LV+   LGF GAP+A SISLWI+ LSL  Y++C
Sbjct: 183 CQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMC 242

Query: 251 SKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLI 310
           S+K   TW GFS ESF  ++ NL +++PSAAMVCLE+W+FEILVFLAG+MPN E++TSL+
Sbjct: 243 SEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLV 302

Query: 311 AMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALA 370
           A+CVNT+AI Y  +YGLSAAASTRVSNELGAG +  AK A +V++KL ++LAL + + L 
Sbjct: 303 AICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLL 362

Query: 371 FGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLAT 430
            GH+ W   F+DS  I +EFAS+  F+  SI  D++Q +LSGVARGCGWQ L   +NLAT
Sbjct: 363 VGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLAT 422

Query: 431 FYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVA 483
           FY IGMP+A   GFKL  Y KGLWIGL+CG+  Q+ SL L+T+ RKWTK++VA
Sbjct: 423 FYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNVA 475
Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
224114908485 predicted protein [Populus trichocarpa] 0.975 0.993 0.696 0.0
225461494487 PREDICTED: MATE efflux family protein AL 0.983 0.997 0.682 0.0
147858860 1134 hypothetical protein VITISV_039558 [Viti 0.939 0.409 0.655 1e-174
255574668484 TRANSPARENT TESTA 12 protein, putative [ 0.953 0.973 0.644 1e-173
302142981438 unnamed protein product [Vitis vinifera] 0.884 0.997 0.707 1e-171
225461496493 PREDICTED: MATE efflux family protein AL 0.910 0.912 0.695 1e-170
18403810477 mate efflux domain-containing protein [A 0.939 0.972 0.617 1e-165
297835374476 hypothetical protein ARALYDRAFT_479865 [ 0.939 0.974 0.609 1e-165
356549709491 PREDICTED: MATE efflux family protein AL 0.981 0.987 0.634 1e-164
356546864500 PREDICTED: MATE efflux family protein AL 0.989 0.978 0.605 1e-162
>gi|224114908|ref|XP_002316890.1| predicted protein [Populus trichocarpa] gi|222859955|gb|EEE97502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/491 (69%), Positives = 395/491 (80%), Gaps = 9/491 (1%)

Query: 1   MLGNTRSSDNPKLPLLGSSDDDISNSHGEEEERRWWRKWRKVLDVEEAKDQVLFSLPMIL 60
           ML NT     P L        + SNS  EE E +  R W+KVLDVEEAK+Q+LFSLPMIL
Sbjct: 1   MLSNTSFEAAPLL--------ERSNSSVEEGENKRLR-WKKVLDVEEAKNQILFSLPMIL 51

Query: 61  TNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAK 120
           TNV YY I LVSVMFAGHLGEL+LAGATLANSWA VTGFAF  GLSGALETLCGQGFGAK
Sbjct: 52  TNVFYYLITLVSVMFAGHLGELELAGATLANSWATVTGFAFMVGLSGALETLCGQGFGAK 111

Query: 121 QYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFA 180
            YRMLGIY+Q SCIIS  F I IS +WFYTEPIL+LLHQD ++S  A LYMKYLIPGLFA
Sbjct: 112 MYRMLGIYLQASCIISFIFCITISVIWFYTEPILLLLHQDAHVSMTAALYMKYLIPGLFA 171

Query: 181 FGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWIS 240
           +G +QN LRFLQTQS+VMP V FS +PL IH GIAY+LVH+T+LGF GAPLA SISLWIS
Sbjct: 172 YGIMQNILRFLQTQSVVMPPVVFSLVPLCIHIGIAYALVHYTALGFKGAPLAASISLWIS 231

Query: 241 TLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLM 300
            L LAIY++C+KK   TW GFSFESF  +L +LK+A+PSAAMVCLE+W+FEILVFLAGLM
Sbjct: 232 FLMLAIYVICAKKFEHTWAGFSFESFHYILHDLKLALPSAAMVCLEYWAFEILVFLAGLM 291

Query: 301 PNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVL 360
           P+SE+STSLIA+CVNT+ + Y  +YGLSAAASTRVSNELG G  +RAKNAMAVTLKL VL
Sbjct: 292 PSSEISTSLIAICVNTETVAYMLTYGLSAAASTRVSNELGEGNPERAKNAMAVTLKLSVL 351

Query: 361 LALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQ 420
           LAL++ LALAFGHNIWA  F+ S  I +EFASM PF+ ISI  D++Q + SGVARGCGWQ
Sbjct: 352 LALLVVLALAFGHNIWAGLFSSSPTIAKEFASMAPFLAISITLDSVQGVFSGVARGCGWQ 411

Query: 421 HLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKM 480
           HLAV+ NLATFY IGMP+A + GFKL LYVKGLWIGL+ GL  QA +L LIT+R  WT  
Sbjct: 412 HLAVYANLATFYCIGMPVACVLGFKLKLYVKGLWIGLISGLCCQAGTLLLITIRTNWTAT 471

Query: 481 DVAMSSEIDGP 491
           D++++ E + P
Sbjct: 472 DLSITKEKENP 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461494|ref|XP_002282547.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858860|emb|CAN78689.1| hypothetical protein VITISV_039558 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574668|ref|XP_002528243.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532329|gb|EEF34128.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142981|emb|CBI20276.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461496|ref|XP_002282551.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18403810|ref|NP_566730.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274226|sp|Q9LUH2.1|ALF5_ARATH RecName: Full=MATE efflux family protein ALF5; AltName: Full=Protein ABERRANT LATERAL ROOT FORMATION 5; AltName: Full=Protein DTX19 gi|13384114|gb|AAK21273.1|AF337954_1 aberrant lateral root formation 5 [Arabidopsis thaliana] gi|9294512|dbj|BAB02774.1| unnamed protein product [Arabidopsis thaliana] gi|17064870|gb|AAL32589.1| Unknown protein [Arabidopsis thaliana] gi|332643256|gb|AEE76777.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297835374|ref|XP_002885569.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] gi|297331409|gb|EFH61828.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356549709|ref|XP_003543234.1| PREDICTED: MATE efflux family protein ALF5-like [Glycine max] Back     alignment and taxonomy information
>gi|356546864|ref|XP_003541842.1| PREDICTED: MATE efflux family protein ALF5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
TAIR|locus:2088020477 ALF5 "AT3G23560" [Arabidopsis 0.945 0.979 0.574 2.3e-142
TAIR|locus:2088010469 AT3G23550 "AT3G23550" [Arabido 0.894 0.942 0.590 4.9e-140
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.874 0.888 0.418 2.4e-92
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.878 0.911 0.423 1.9e-90
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.872 0.896 0.389 1.7e-84
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.860 0.885 0.399 1.2e-83
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.872 0.894 0.379 3.6e-82
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.872 0.885 0.375 2.5e-81
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.870 0.892 0.381 4.1e-81
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.870 0.903 0.395 4.1e-81
TAIR|locus:2088020 ALF5 "AT3G23560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
 Identities = 270/470 (57%), Positives = 330/470 (70%)

Query:    14 PLLGSSDDDISNSHGXXXXXXXXXXXXXVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSV 73
             PLL   DD +                  V+DVEEAK Q+++SLPMILTNV YY IP+ SV
Sbjct:     9 PLL---DDHVGGEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSV 65

Query:    74 MFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTXX 133
             MFA HLG+L+LAGATLANSWA V+GFAF  GLSG+LETLCGQGFGAK+YRMLG+++Q+  
Sbjct:    66 MFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSC 125

Query:   134 XXXXXXXXXXXXLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQT 193
                          WF+TE I  LL QDP+IS+QA LYMKY  PGL A+GFLQN LRF QT
Sbjct:   126 IVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQT 185

Query:   194 QSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKK 253
             QSI+ PLV FS +PL I+   AY LV+   LGF GAP+A SISLWI+ LSL  Y++CS+K
Sbjct:   186 QSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSEK 245

Query:   254 TGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMC 313
                TW GFS ESF  ++ NL +++PSAAMVCLE+W+FEILVFLAG+MPN E++TSL+A+C
Sbjct:   246 FKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAIC 305

Query:   314 VNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXXFGH 373
             VNT+AI Y  +YGLSAAASTRVSNELGAG +  AK                       GH
Sbjct:   306 VNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVGH 365

Query:   374 NIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYF 433
             + W   F+DS  I +EFAS+  F+  SI  D++Q +LSGVARGCGWQ L   +NLATFY 
Sbjct:   366 DGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLATFYL 425

Query:   434 IGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVA 483
             IGMP+A   GFKL  Y KGLWIGL+CG+  Q+ SL L+T+ RKWTK++VA
Sbjct:   426 IGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNVA 475
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009636 "response to toxic substance" evidence=ISS
TAIR|locus:2088010 AT3G23550 "AT3G23550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUH2ALF5_ARATHNo assigned EC number0.61730.93920.9727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027712001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (487 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-161
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 5e-57
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-54
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-53
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 9e-41
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-35
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-33
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-30
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-27
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-27
pfam01554161 pfam01554, MatE, MatE 8e-26
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-25
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 9e-21
pfam01554161 pfam01554, MatE, MatE 3e-20
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 3e-18
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 6e-17
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-14
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 4e-14
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 1e-10
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-10
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-10
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-09
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-09
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-09
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 5e-08
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-08
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 1e-06
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-05
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 5e-04
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-04
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  462 bits (1192), Expect = e-161
 Identities = 204/434 (47%), Positives = 285/434 (65%), Gaps = 1/434 (0%)

Query: 47  EAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLS 106
           EAK  +  + P++LT++  Y++ +VSV+F GHLG+L+LA A+LA+S+A VTGF+   GL+
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 107 GALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQ 166
            AL+TLCGQ FGAK Y+++G+Y+Q + +I     + IS LW  TEPIL+LL QDP I+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 167 AGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGF 226
           AG Y+++LIPGLFA+   +   R+LQ Q IV+PLV+ S + L ++  + Y LV    LGF
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 227 GGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLE 286
            GA LA SIS W+  + L +YI  SK    TW GFS E+F      LK+A+PSA M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 287 FWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDR 346
           +W+FEILV LAGL+P   ++ +  ++C+ T ++ Y    G+S AAS RV NELGAG   R
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 347 AKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAM 406
           AK A  V L L +++ +++ + L    ++WA  FT   E++   A + P + +  IFD +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 407 QAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQAC 466
           QA+LSGV RGCG Q L  +VNL  +Y IG+P+ LL  F L L +KGLWIGL+ GL  QA 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 467 SLFLITLRRKWTKM 480
            L LI LR  W K 
Sbjct: 420 ILLLIILRTDWDKE 433

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 494
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
PRK00187464 multidrug efflux protein NorA; Provisional 99.9
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK01766456 multidrug efflux protein; Reviewed 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
TIGR01695502 mviN integral membrane protein MviN. This model re 99.82
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.79
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.75
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.72
PRK15099416 O-antigen translocase; Provisional 99.71
PRK10459492 colanic acid exporter; Provisional 99.69
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
COG2244480 RfbX Membrane protein involved in the export of O- 99.6
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.38
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.27
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.26
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.09
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.46
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.43
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.29
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.17
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.09
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.04
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.94
COG4267467 Predicted membrane protein [Function unknown] 97.48
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-57  Score=443.37  Aligned_cols=439  Identities=26%  Similarity=0.384  Sum_probs=415.5

Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchh
Q 011062           44 DVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYR  123 (494)
Q Consensus        44 ~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  123 (494)
                      .++..|+++++++|++++++++.+++.+|+.++||+|++++++.+++.++..++ ..+..|++.|.++.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            345789999999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHH
Q 011062          124 MLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVF  202 (494)
Q Consensus       124 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  202 (494)
                      ++++..++++.+++++++++.++ +.+.++++.+++.++++.+.+.+|+++..++.++..+...+.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999888876 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-cC-cccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCChHHHHHHHHHHHHHhhH
Q 011062          203 FSALPLAIHFGIAYSLVHW-TS-LGFGGAPLACSISLWISTLSLAIYILCSKK-TGRTWEGFSFESFSVLLTNLKVAMPS  279 (494)
Q Consensus       203 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~p~  279 (494)
                      .+++..++|++++++|+++ ++ +|+.|+++||++++.+..++..++++++++ ......+..+.+++..|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 56 999999999999999999999999987664 22232334345679999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 011062          280 AAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVV  359 (494)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (494)
                      ++++......+...+.+.+++|  ++++|+|+++.++.++.+++..+++++.+|.+++++|+||.+++++..+.+..+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  77999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Q 011062          360 LLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLA  439 (494)
Q Consensus       360 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  439 (494)
                      .++...+++++++++++.++|++|+|+.+.+..++++.++..++++++....++++|.||++.+++.++++.|++.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcCchhHHHhhcc
Q 011062          440 LLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSS  486 (494)
Q Consensus       440 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~  486 (494)
                      ++++... +|..|+|++...++.+..+...++++|.+|++....+.+
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAAS  454 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence            9998776 899999999999999999999999999999987665543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 1e-12
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 3e-09
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/434 (20%), Positives = 173/434 (39%), Gaps = 14/434 (3%)
Query: 46  EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGL 105
           +EA + +  + P+++ +V+   +  V  + AG +  + +A  ++A S  ++    F  GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS-IWLPSILFGVGL 67
Query: 106 SGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISE 165
             AL  +  Q  GA +   +   +                + F T+ I+  +  +  ++ 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127
Query: 166 QAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWT--- 222
           +   YM  +I  + A+   Q    F    S+  P +    + L ++  + +  V+     
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187
Query: 223 -SLGFGGAPLACSISLWISTLSLAIYILCSKKTG--RTWEGFSFESFSVLLTNLKVAMPS 279
             LG  G  +A +I  WI  L L  YI+ SK+    + +E F       L+   ++  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247
Query: 280 AAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNEL 339
           AA +  E   F ++  L   + ++ ++   +A+  N  ++ + F   + AA S RV ++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHKL 305
Query: 340 GAGTIDRAKNXXXXXXXXXXXXXXXXXXXXXFGHNIWASFFTDSREIVQEFASMTPFIVI 399
           G      A                             A  +T+++ +V     +  F  I
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365
Query: 400 SIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-----KLNLYVKGLW 454
               DA+Q + +G  RG             +++ +G+P   + G      +  L  KG W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425
Query: 455 IGLVCGLASQACSL 468
           +G + GL++ A  L
Sbjct: 426 LGFIIGLSAAALML 439
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  289 bits (743), Expect = 3e-93
 Identities = 98/454 (21%), Positives = 196/454 (43%), Gaps = 16/454 (3%)

Query: 46  EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGL 105
           +EA + +  + P+++ +V+   +  V  + AG +  + +A  ++A S  ++    F  GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 106 SGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISE 165
             AL  +  Q  GA +   +   +    I++   S+ I  + F T+ I+  +  +  ++ 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 166 QAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVH----W 221
           +   YM  +I  + A+   Q    F    S+  P +    + L ++  + +  V+     
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 222 TSLGFGGAPLACSISLWISTLSLAIYILCSKKTG--RTWEGFSFESFSVLLTNLKVAMPS 279
             LG  G  +A +I  WI  L L  YI+ SK+    + +E F       L+   ++  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 280 AAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNEL 339
           AA +  E   F ++  L   + ++ ++   +A+  N  ++ + F   + AA S RV ++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 340 GAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVI 399
           G      A  A  V L   +  A I  L         A  +T+++ +V     +  F  I
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 400 SIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-----KLNLYVKGLW 454
               DA+Q + +G  RG             +++ +G+P   + G      +  L  KG W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 455 IGLVCGLASQACSLF--LITLRRKWTKMDVAMSS 486
           +G + GL++ A  L   L  L+++   + + +++
Sbjct: 426 LGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLAA 459
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.84
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 94.32
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 92.72
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 90.17
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.9e-49  Score=396.42  Aligned_cols=432  Identities=22%  Similarity=0.325  Sum_probs=398.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhH
Q 011062           45 VEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRM  124 (494)
Q Consensus        45 ~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~  124 (494)
                      ++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++++..+.++|++|++|+++
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~   86 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHK   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhH
Confidence            36689999999999999999999999999999999999999999999998877 88889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 011062          125 LGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFS  204 (494)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  204 (494)
                      .++.+++++.+..++++++.++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+.+++.||++.++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  166 (460)
T 3mkt_A           87 IPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG  166 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            99999999999999999887777888999888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh----cCcccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCChHHHHHHHHHHHHHhh
Q 011062          205 ALPLAIHFGIAYSLVHW----TSLGFGGAPLACSISLWISTLSLAIYILCSKKTGR-T-WEGFSFESFSVLLTNLKVAMP  278 (494)
Q Consensus       205 ~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~k~~~~~~~p  278 (494)
                      +++.++|+++++++++.    +++|+.|+++++.+++.+..++..++.+++++.++ + ++++.+.+++..|+++++|+|
T Consensus       167 ~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p  246 (460)
T 3mkt_A          167 FIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP  246 (460)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhH
Confidence            99999999999999985    26899999999999999999998888866544322 1 122223456788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011062          279 SAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLV  358 (494)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (494)
                      .++++....+.+.+++.+++++|  ++++++|+++.++.++..++..+++++..|.+++++|++|.+++++..+++.+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~  324 (460)
T 3mkt_A          247 VAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTG  324 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999997  7799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH
Q 011062          359 VLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPL  438 (494)
Q Consensus       359 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~  438 (494)
                      ..++++.++++.++++++.++|.+|+++.+.+.+++++++++.++++++....+++++.||++.+++.++++.|++++|+
T Consensus       325 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  404 (460)
T 3mkt_A          325 LATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPT  404 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh----cC-CCchhHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 011062          439 ALLFGFK----LN-LYVKGLWIGLVCGLASQACSLFLITLRRKWTK  479 (494)
Q Consensus       439 ~~~l~~~----~~-~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~  479 (494)
                      ++++...    ++ +|..|+|+++.+++.+..++..+.++|..+++
T Consensus       405 ~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~  450 (460)
T 3mkt_A          405 GYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQS  450 (460)
T ss_dssp             HHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCST
T ss_pred             HHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999776    56 89999999999999999988877776655544
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 88.02
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 85.31
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=8.4  Score=34.14  Aligned_cols=30  Identities=10%  Similarity=0.086  Sum_probs=18.6

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062          446 LNLYVKGLWIGLVCGLASQACSLFLITLRR  475 (494)
Q Consensus       446 ~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~  475 (494)
                      .+.|..+.++......++..++.+....++
T Consensus       405 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (447)
T d1pw4a_         405 DFFGWDGGFMVMIGGSILAVILLIVVMIGE  434 (447)
T ss_dssp             HSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456777777766666666666555554443
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure