Citrus Sinensis ID: 011077

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTSESRRL
cccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccccHHHHHHHcccccccHHHHHHHHccccEEEcccccEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccc
cccHHccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHcccccccccccccccccccccccccHHcHHHHHHHHcccccccccc
mssssaangnslppflskiydmvedpstndivswsssnnsFIVWKVAEfsrdllpkyfkhsnfsSFVRQLNtygfrkvdpdryefaneGFLRGQKHLLKSIsrrkpaqvhgqqqpklqnssvgacvevgkygLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQqndsnrhisgsnkkrrlprqdeentvgaydssipngqivkfqpSMNEAAKAMLHQIMkmnspsrleptmsnLSTFlidnipsanalenghsssqisgvtlsevppnsgqsnmstesrfhvpssaiseiqcspcvsdsvkvnptqekskhnsgndtvlpnfpqlqgiasestisipdvnfvlsgngnaenldptaldgtmsidadafspdhdvdvspdgihklpridDAFWEEfltasplpgdtdeinssplesgmtseleqqpeqangwdnfqHMDHLTEQMglltsesrrl
mssssaangnslppFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPaqvhgqqqpklqnssvgaCVEVGKYGLEEEVEILKRDKNVLMQELVRLRqqqqatdrqlHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQndsnrhisgsnkkrrlprqdeentvgaydssipngQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEkskhnsgndtvlpnFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEqmglltsesrrl
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGqrvqvmeqrqqqmmSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTSESRRL
***************LSKIYDMVE***TNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHL************************VGACVEVGKYGLEEEVEILKRDKNVLMQELVRL***************************************************************************************************************************L**********************************************************************************************TISIPDVNFVLS***********************************GIHKLPRIDDAFWEEFLT*********************************************************
****************SKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHL*************************************************LMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA**************************************************************************************************************************************************************************************************************************************************AFWEEFLT*************************************QHMDHLTEQ***********
*********NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSIS*****************SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNR*******************VGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLS**********************AISEIQCSPCVSDSV**************NDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSP*************EQANGWDNFQHMDHLTEQMGLLTSESRRL
*********NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRR**************************YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRH****************************GQIVKFQPSMNEAAKAMLHQIMKMN*************************************************************************************************************S*******NF****************************************HKLPRIDDAFWEEFLTAS******************************GWDNFQ***HLTEQ*GL********
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MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTSESRRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query494 2.2.26 [Sep-21-2011]
Q84T61506 Heat stress transcription yes no 0.919 0.897 0.536 1e-135
O81821481 Heat stress transcription yes no 0.906 0.931 0.530 1e-124
P41153527 Heat shock factor protein N/A no 0.898 0.842 0.513 1e-122
Q40152527 Heat shock factor protein N/A no 0.898 0.842 0.509 1e-122
Q9SCW5468 Heat stress transcription no no 0.917 0.967 0.518 1e-121
Q9LQM7485 Heat stress transcription no no 0.878 0.894 0.503 1e-113
P41151495 Heat stress transcription no no 0.870 0.868 0.463 1e-101
P41152351 Heat shock factor protein N/A no 0.402 0.566 0.590 4e-67
Q6F388357 Heat stress transcription no no 0.404 0.560 0.577 5e-65
Q9LUH8406 Heat stress transcription no no 0.421 0.512 0.578 1e-64
>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1 Back     alignment and function desciption
 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/490 (53%), Positives = 336/490 (68%), Gaps = 36/490 (7%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFL K Y+MV+DP+T+ +VSW   NNSF+VW   EF+RDLLPKYFKHSNFSSFVRQLNT
Sbjct: 36  PPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNT 95

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-QQPKLQNSSVGACVEVGKY 131
           YGFRKVDPDR+EFANEGFLRGQKHLLK+I+RRKP   + Q QQP+L  + V ACVEVGK+
Sbjct: 96  YGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKF 155

Query: 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191
           G+EEE+E+LKRDKNVLMQELVRLRQQQQ TD QL T+G+R+Q MEQRQQQMMSFLAKAMH
Sbjct: 156 GMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMH 215

Query: 192 SPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIP--NGQIVKFQPSMNE 249
           SP FL+Q VQQ  +S R I  SNKKRRLP+QD     G+ DS     +GQIVK+QP +NE
Sbjct: 216 SPGFLAQFVQQNENSRRRIVASNKKRRLPKQD-----GSLDSESASLDGQIVKYQPMINE 270

Query: 250 AAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDN-IPSANALENGHSSSQISGVTLSEVPPN 308
           AAKAML +I+K++S  R E +M N   FL++N +P+   L++  SS++ SGVTL+EVP N
Sbjct: 271 AAKAMLRKILKLDSSHRFE-SMGNSDNFLLENYMPNGQGLDS-SSSTRNSGVTLAEVPAN 328

Query: 309 SGQSNMSTESRFH-VPSSAISEIQCSPCVSD--------SVKVNPTQEKSKHNSGNDTVL 359
           SG   ++T S    + S++  +IQC P V D        ++   P+  K+      D  +
Sbjct: 329 SGLPYVATSSGLSAICSTSTPQIQC-PVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINI 387

Query: 360 PNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPD 419
             FP LQ I +E  + IP   F + G     +L P   D ++ I+ D         +  D
Sbjct: 388 LEFPDLQDIVAEENVDIPGGGFEMPGPEGVFSL-PEEGDDSVPIETDEI-------LYND 439

Query: 420 GIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDH 479
              KLP I D+FWE+FL ASPL  D DE++S  L+       +++ +Q NGW   ++M +
Sbjct: 440 DTQKLPAIIDSFWEQFLVASPLSVDNDEVDSGVLD-------QKETQQGNGWTKAENMAN 492

Query: 480 LTEQMGLLTS 489
           LTEQMGLL+S
Sbjct: 493 LTEQMGLLSS 502
Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2 Back     alignment and function description
>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1 Back     alignment and function description
>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1 Back     alignment and function description
>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2 Back     alignment and function description
>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2 Back     alignment and function description
>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2 Back     alignment and function description
>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1 Back     alignment and function description
>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
225454755512 PREDICTED: heat stress transcription fac 0.969 0.935 0.632 1e-162
224126227472 predicted protein [Populus trichocarpa] 0.931 0.974 0.641 1e-162
357474297493 Heat stress transcription factor A-1 [Me 0.951 0.953 0.561 1e-143
255558045494 Heat shock factor protein HSF8, putative 0.888 0.888 0.585 1e-139
224138180484 predicted protein [Populus trichocarpa] 0.943 0.962 0.565 1e-137
147767343495 hypothetical protein VITISV_017888 [Viti 0.935 0.933 0.564 1e-137
359474544496 PREDICTED: heat shock factor protein HSF 0.935 0.931 0.564 1e-137
115456675506 Os03g0854500 [Oryza sativa Japonica Grou 0.919 0.897 0.536 1e-133
255573449510 Heat shock factor protein HSF8, putative 0.914 0.886 0.552 1e-133
347369340482 heat shock transcription factor [Populus 0.925 0.948 0.543 1e-129
>gi|225454755|ref|XP_002273949.1| PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 315/498 (63%), Positives = 375/498 (75%), Gaps = 19/498 (3%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFLSK YDMV+D +T+ +VSWSS NNSF+VW V EFSRDLLPKYFKH+NFSSFVRQLNT
Sbjct: 18  PPFLSKTYDMVDDRATDSVVSWSSGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNT 77

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ----------QQPKLQNSSV 122
           YGFRKVDPDR+EFANEGFLRGQKHLLKSISRRK   VH            QQ     SS 
Sbjct: 78  YGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKSTHVHTHNQQLQQQQQQQQQTQVQSSS 137

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL TVGQRVQ MEQRQQQM
Sbjct: 138 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDHQLQTVGQRVQDMEQRQQQM 197

Query: 183 MSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVK 242
           MSFLAKA+ SP FL+QLVQQQNDS R I+G NKKRRLP+Q+EE     + ++ P+G++VK
Sbjct: 198 MSFLAKAVQSPGFLAQLVQQQNDSKRRITGVNKKRRLPKQEEEIHSAKHATTAPDGRVVK 257

Query: 243 FQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTL 302
           +QP MNEAAKAML QI+KMN+  R EP++ N   FLID++PS+NAL++  SSS++SGVTL
Sbjct: 258 YQPLMNEAAKAMLRQILKMNATPRREPSI-NPDAFLIDDVPSSNALDSLSSSSRVSGVTL 316

Query: 303 SEVPPNSGQSNMSTESRF---HVPSSAISEIQCSPCV-SDSVKVNPTQEKSKHNSGNDTV 358
           +EVP  SGQS +  ES +   H+ S+ ISE Q SP V +DSVK     E +  NS  DTV
Sbjct: 317 AEVPLTSGQSYLPVESAYSSNHL-SAGISETQSSPTVMTDSVKAAQFPEVNVPNSQEDTV 375

Query: 359 LPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTA--LDGTMSIDADAFSPDHDVDV 416
           L +F Q++GI  EST+ IP+V  V +  G+   +DP A  LDG +  + D FS D +VD 
Sbjct: 376 LTDFTQMEGIIPESTVEIPNVGMVGTETGSPGYMDPMAGILDGVVPAETDEFSLDSNVDS 435

Query: 417 SPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQH 476
             DGI KLP I+DAFWE+FL ASPL GDTDEI+SS LE  + +  E QP   NGW+N QH
Sbjct: 436 LLDGIPKLPSINDAFWEQFLAASPLTGDTDEIHSSMLEDNVVNVHELQP-GVNGWNNTQH 494

Query: 477 MDHLTEQMGLLTSESRRL 494
           MDHLTE+MGLL S+++ +
Sbjct: 495 MDHLTERMGLLASKAKGM 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126227|ref|XP_002319787.1| predicted protein [Populus trichocarpa] gi|222858163|gb|EEE95710.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357474297|ref|XP_003607433.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|357474315|ref|XP_003607442.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|355508488|gb|AES89630.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|355508497|gb|AES89639.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|388511307|gb|AFK43715.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255558045|ref|XP_002520051.1| Heat shock factor protein HSF8, putative [Ricinus communis] gi|223540815|gb|EEF42375.1| Heat shock factor protein HSF8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224138180|ref|XP_002326538.1| predicted protein [Populus trichocarpa] gi|222833860|gb|EEE72337.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147767343|emb|CAN71266.1| hypothetical protein VITISV_017888 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474544|ref|XP_003631489.1| PREDICTED: heat shock factor protein HSF8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|115456675|ref|NP_001051938.1| Os03g0854500 [Oryza sativa Japonica Group] gi|75298093|sp|Q84T61.1|HSFA1_ORYSJ RecName: Full=Heat stress transcription factor A-1; AltName: Full=Heat stress transcription factor 13; Short=OsHsf-13; AltName: Full=Heat stress transcription factor 3; Short=rHsf3 gi|29126355|gb|AAO66547.1| putative heat shock transcription factor [Oryza sativa Japonica Group] gi|33591100|gb|AAQ23057.1| heat shock factor RHSF3 [Oryza sativa Japonica Group] gi|108712168|gb|ABF99963.1| Heat shock factor protein HSF8, putative, expressed [Oryza sativa Japonica Group] gi|113550409|dbj|BAF13852.1| Os03g0854500 [Oryza sativa Japonica Group] gi|213959105|gb|ACJ54887.1| heat shock factor [Oryza sativa Japonica Group] gi|215713464|dbj|BAG94601.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741087|dbj|BAG97582.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|255573449|ref|XP_002527650.1| Heat shock factor protein HSF8, putative [Ricinus communis] gi|223532955|gb|EEF34721.1| Heat shock factor protein HSF8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|347369340|gb|AEO91550.1| heat shock transcription factor [Populus simonii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
TAIR|locus:2149050481 HSF3 "AT5G16820" [Arabidopsis 0.769 0.790 0.531 1.3e-98
TAIR|locus:2075447468 HSFA1E "AT3G02990" [Arabidopsi 0.714 0.754 0.551 2.6e-95
TAIR|locus:2005495495 HSF1 "AT4G17750" [Arabidopsis 0.692 0.690 0.503 7.1e-90
TAIR|locus:2028326485 HSFA1D "AT1G32330" [Arabidopsi 0.682 0.694 0.565 1.2e-88
TAIR|locus:2094339406 HSFA6B "AT3G22830" [Arabidopsi 0.449 0.546 0.553 2.5e-58
TAIR|locus:2057371345 HSFA2 "AT2G26150" [Arabidopsis 0.548 0.785 0.423 3e-53
TAIR|locus:2117139401 HSF A4A "AT4G18880" [Arabidops 0.629 0.775 0.335 6e-50
TAIR|locus:2200171374 HSFA8 "AT1G67970" [Arabidopsis 0.445 0.588 0.458 2.3e-48
TAIR|locus:2172003345 RHA1 "AT5G45710" [Arabidopsis 0.398 0.571 0.408 1.6e-45
TAIR|locus:2144603412 HSFA3 "AT5G03720" [Arabidopsis 0.457 0.548 0.415 2e-45
TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 210/395 (53%), Positives = 272/395 (68%)

Query:    10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
             NS+PPFLSK YDMV+DP TN++VSWSS NNSF+VW   EFS+ LLPKYFKH+NFSSFVRQ
Sbjct:    23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query:    70 LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVH-GQQQPKLQNSSVGACVEV 128
             LNTYGFRKVDPDR+EFANEGFLRG+K LLKSI RRKP+ V   QQQ ++Q+SSVGACVEV
Sbjct:    83 LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query:   129 GKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXXSFLAK 188
             GK+G+EEEVE LKRDKNVLMQELVRLRQQQQAT+ QL  VG              SFLAK
Sbjct:   143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query:   189 AMHSPSFLSQLVQQQN-DSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSM 247
             A+ SP FL+QLVQQ N D NR I GSNKKRRLP  ++EN      + + N QIV++QPS+
Sbjct:   203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGL-NRQIVRYQPSI 261

Query:   248 NEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPP 307
             NEAA+ ML Q +  ++  R E   +N  +FL+ ++PS+ +++NG+ SS++SGVTL+E  P
Sbjct:   262 NEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSGVTLAEFSP 321

Query:   308 NSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQG 367
             N+ QS  +T     VP ++++    +  V  ++  +P Q  +  +S +    P F  L G
Sbjct:   322 NTVQS--ATNQ---VPEASLAHHPQAGLVQPNIGQSPAQGAAPADSWS----PEF-DLVG 371

Query:   368 IASESTISIPDVNFVLSGNGNAENLDPTALDGTMS 402
               ++S      +  VL      + + P   +G M+
Sbjct:   372 CETDSGECFDPIMAVLD-ESEGDAISPEG-EGKMN 404
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0009408 "response to heat" evidence=IEP;IMP;RCA
TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P41153HSF8_SOLPENo assigned EC number0.51390.89870.8425N/Ano
Q40152HSF8_SOLLCNo assigned EC number0.50990.89870.8425N/Ano
Q84T61HSFA1_ORYSJNo assigned EC number0.53670.91900.8972yesno
O81821HFA1B_ARATHNo assigned EC number0.53030.90680.9313yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
pfam0044796 pfam00447, HSF_DNA-bind, HSF-type DNA-binding 3e-51
smart00415105 smart00415, HSF, heat shock factor 3e-48
COG5169282 COG5169, HSF1, Heat shock transcription factor [Tr 4e-25
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding Back     alignment and domain information 
 Score =  168 bits (429), Expect = 3e-51
 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 2/95 (2%)

Query: 14  PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTY 73
           PFL K+Y+++EDPS +DI+SWS   NSFI+W   EF++ +LPKYFKH+NFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 74  GFRKVDPDR--YEFANEGFLRGQKHLLKSISRRKP 106
           GF KV  DR  +EFA+  F RGQK LL  I RRK 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96
>gnl|CDD|214654 smart00415, HSF, heat shock factor Back     alignment and domain information
>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 494
KOG0627304 consensus Heat shock transcription factor [Transcr 100.0
PF00447103 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0 100.0
smart00415105 HSF heat shock factor. 100.0
COG5169282 HSF1 Heat shock transcription factor [Transcriptio 99.97
PF0017885 Ets: Ets-domain; InterPro: IPR000418 Transcription 95.35
PF03310121 Cauli_DNA-bind: Caulimovirus DNA-binding protein; 94.5
smart0041387 ETS erythroblast transformation specific domain. v 92.11
KOG3806177 consensus Predicted transcription factor [Transcri 85.2
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 82.7
TIGR03752472 conj_TIGR03752 integrating conjugative element pro 81.83
COG307479 Uncharacterized protein conserved in bacteria [Fun 81.35
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 80.52
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 80.52
>KOG0627 consensus Heat shock transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-46  Score=375.02  Aligned_cols=197  Identities=50%  Similarity=0.805  Sum_probs=176.8

Q ss_pred             CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecC--CCCc
Q 011077            6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD--PDRY   83 (494)
Q Consensus         6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--~d~~   83 (494)
                      .+....+++|+.|||+||+||++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+  +++|
T Consensus         6 ~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~w   85 (304)
T KOG0627|consen    6 LSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRW   85 (304)
T ss_pred             ccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCce
Confidence            45556899999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             eEecCCcccCcccccccccccccccccCCC--Ccccc--cCCCCcceecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077           84 EFANEGFLRGQKHLLKSISRRKPAQVHGQQ--QPKLQ--NSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQ  159 (494)
Q Consensus        84 eF~h~~F~Rg~~~LL~~IkRrk~~~~~~~~--~~~~~--~~~~~~~~E~~~~~Le~Eie~LKrDk~~L~qEL~~LRQqQ~  159 (494)
                      ||+|++|+||+++||++|+|||+.++....  .++..  ......++...+..++.++.+|+++++.|++|+++||+++.
T Consensus        86 EF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~  165 (304)
T KOG0627|consen   86 EFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQD  165 (304)
T ss_pred             eecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999998776421  11111  11112334556678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHh
Q 011077          160 ATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ  202 (494)
Q Consensus       160 ~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~fl~~lvq~  202 (494)
                      .++++++.+.+++..++.+|++++.|+++.++.|+|+.++.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  208 (304)
T KOG0627|consen  166 ALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQR  208 (304)
T ss_pred             HHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccch
Confidence            9999999999999999999999999999999999999999865

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs [] Back     alignment and domain information
>smart00415 HSF heat shock factor Back     alignment and domain information
>COG5169 HSF1 Heat shock transcription factor [Transcription] Back     alignment and domain information
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription [] Back     alignment and domain information
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part Back     alignment and domain information
>smart00413 ETS erythroblast transformation specific domain Back     alignment and domain information
>KOG3806 consensus Predicted transcription factor [Transcription] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
2ldu_A125 Solution Nmr Structure Of Heat Shock Factor Protein 8e-23
1hks_A106 Solution Structure Of The Dna-Binding Domain Of Dro 4e-16
3hts_B102 Heat Shock Transcription FactorDNA COMPLEX Length = 4e-15
1fym_A92 Serendipitous Crystal Structure Containing The Heat 7e-15
1fbu_A90 Heat Shock Transcription Factor Dna Binding Domain 8e-15
1fbs_A90 Heat Shock Transcription Factor Dna Binding Domain 4e-14
1fbq_A90 Heat Shock Transcription Factor Dna Binding Domain 5e-14
1fyk_A92 Serendipitous Crystal Structure Containing The Heat 5e-14
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
Query: 7   ANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSF 66
           A  +++P FL+K++ +V DP T+ ++ WS S NSF V+   +F++++LPKYFKH+N +SF
Sbjct: 12  AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 67  VRQLNTYGFRK---------VDPDR--YEFANEGFLRGQKHLLKSISRR 104
           VRQLN YGFRK         V P+R   EF +  FLRGQ+ LL++I R+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106 Back     alignment and structure
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102 Back     alignment and structure
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92 Back     alignment and structure
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90 Back     alignment and structure
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90 Back     alignment and structure
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90 Back     alignment and structure
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
1hks_A106 Heat-shock transcription factor; transcription reg 3e-52
2ldu_A125 Heat shock factor protein 1; structural genomics, 2e-50
3hts_B102 Heat shock transcription factor; transcription reg 2e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106 Back     alignment and structure
 Score =  171 bits (435), Expect = 3e-52
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 9   GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
           G+ +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 69  QLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           QLN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
1hks_A106 Heat-shock transcription factor; transcription reg 100.0
2ldu_A125 Heat shock factor protein 1; structural genomics, 100.0
3hts_B102 Heat shock transcription factor; transcription reg 99.97
4avp_A106 ETS translocation variant 1; transcription, transc 92.31
2ypr_A102 Protein FEV; transcription; 2.64A {Homo sapiens} P 88.31
2dao_A118 Transcription factor ETV6; ETS domain, structural 88.3
1yo5_C97 SAM pointed domain containing ETS transcription fa 87.12
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 87.04
1awc_A110 Protein (GA binding protein alpha); complex (trans 86.63
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 85.12
1wwx_A107 E74-like factor 5 ESE-2B; DNA binding, transcripti 85.0
1hbx_G157 ETS-domain protein ELK-4; gene regulation, transcr 83.83
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 83.26
1gvj_A146 C-ETS-1 protein, P54; transcription, autoinhibitio 83.11
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 80.64
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Back     alignment and structure
Probab=100.00  E-value=5.5e-39  Score=279.08  Aligned_cols=95  Identities=40%  Similarity=0.827  Sum_probs=91.5

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecC----------
Q 011077           10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD----------   79 (494)
Q Consensus        10 ~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~----------   79 (494)
                      +++|+||.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+||||||.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCceEecCCcccCccccccccccc
Q 011077           80 PDRYEFANEGFLRGQKHLLKSISRR  104 (494)
Q Consensus        80 ~d~~eF~h~~F~Rg~~~LL~~IkRr  104 (494)
                      ++.|+|+|++|+||+++||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            5789999999999999999999997
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A Back     alignment and structure
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A Back     alignment and structure
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Back     alignment and structure
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Back     alignment and structure
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 494
d1hksa_106 a.4.5.22 (A:) Heat-shock transcription factor {Dro 6e-41
d2htsa_92 a.4.5.22 (A:) Heat-shock transcription factor {Mil 2e-34
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  140 bits (354), Expect = 6e-41
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 9   GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
           G+ +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 69  QLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           QLN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
d1hksa_106 Heat-shock transcription factor {Drosophila melano 100.0
d2htsa_92 Heat-shock transcription factor {Milk yeast (Kluyv 99.95
d1pp7u_114 39 kda initiator binding protein, IBP39, N-termina 95.34
d1awca_110 GA binding protein (GABP) alpha {Mouse (Mus muscul 90.16
d1hbxg_155 Serum response factor accessory protein 1a, SAP-1 89.67
d1flia_98 Fli-1 {Human (Homo sapiens) [TaxId: 9606]} 89.33
d1duxc_86 Elk-1 {Human (Homo sapiens) [TaxId: 9606]} 89.11
d1gvja_142 ETS-1 transcription factor, residues 331-440 {Huma 85.94
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1e-35  Score=256.34  Aligned_cols=96  Identities=41%  Similarity=0.841  Sum_probs=90.9

Q ss_pred             CCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecC---------
Q 011077            9 GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD---------   79 (494)
Q Consensus         9 ~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~---------   79 (494)
                      ++++|+||.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||+|++|+||+||||+|||+||.         
T Consensus         1 g~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~   80 (106)
T d1hksa_           1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRF   80 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSC
T ss_pred             CCCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999983         


Q ss_pred             -CCCceEecCCcccCccccccccccc
Q 011077           80 -PDRYEFANEGFLRGQKHLLKSISRR  104 (494)
Q Consensus        80 -~d~~eF~h~~F~Rg~~~LL~~IkRr  104 (494)
                       ++.|+|+|++|+||+++||..|+||
T Consensus        81 ~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          81 DRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCccEEECccccCCCHHHHhhCcCC
Confidence             4578999999999999999999986
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]} Back     information, alignment and structure
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure