Citrus Sinensis ID: 011101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MHMMKKKAKMGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTYDALKKHF
Secondary Structure (PSIPRED)
ccccHHHHcccccEEHHHHHHHHHHHHHcccEEEEcccHHHHccHHEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccEEEEEEccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHcccccccEEEccccEEEEcccccccccHHHHHHcccccccccccHHHHcccccccEEcccccccccccHHHcccccccEEEcccccEEccccccccccccccEEEcccccccccccHHHHccccccEEEEEccccccccccccccccccEEEccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHcHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHcccccccccccccEEEccccccccccccEEEEEccccccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccEEEEEccccccccccHHHccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEccccccccccHHHccccccccccccHHHccccccEEEEcccccccccccHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mhmmkkkakmGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIiggggygpapapeycpppppppepicppppppepicpppppppppppppppppppppprppkppspfgpfaSERIQLAFKVIQRFKKRitydpqgiantwmgpdvcnkykgfvcdvrpdikkkavagvdfngyrfngpdfslsDFLEKLEDLAIFHansnnftksiPKMTSKLKFLYELdvsnnklfggfpmevvniknltfldlrfnsfsgpvpaeifyLDLDVLFLnnnkfsqnlpenigstGALYVTFanneftgpipssiGRAKYLLEVLFLNnfftgclpyeigflsnstvfdvgnnrltgpiphsfgclsSMQYLNLAMnqfygpvpeivcqlpklvNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIldlpnqrsreeCGKFfseskkcpnersltlvpcarnrstvnltetfdkkltapapsprtydaLKKHF
Flexible Loop (DISEMBL)
mhmmkkkakmGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRItydpqgiantwmgpdvCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHansnnftksiPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIldlpnqrsreECGKFfseskkcpnersltlvpcarnrstvnltetfdkkltapapsprtydalkkhf
Low Complexity Region (SEG)
MHMMKKKAKMGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEiiiggggygpapapeycpppppppepicppppppepicpppppppppppppppppppppprppkppspFGPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTYDALKKHF
Disordered region (IsUnstruct)
**********GTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGY******************************************************************ERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP************************TLVPCA*********************************
Disordered Region (DISOPRED)
************NIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIG********************************ICPPPPPPPPP****************************RIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTYDALKKHF
Disordered Region (DISEMBL)
********KMGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTYDALKKHF
Disordered Region (DISPRO)
****KKKAKMGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTY*AL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHMMKKKAKMGTNIIVYFLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTYDALKKHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
Q8W3M4	404	Uncharacterized protein A	no	no	0.681	0.831	0.498	9e-91
O81765	699	Pollen-specific leucine-r	no	no	0.679	0.479	0.433	5e-73
Q9XIL9	727	Pollen-specific leucine-r	no	no	0.667	0.452	0.417	1e-70
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.659	0.339	0.415	2e-70
Q9T0K5	760	Leucine-rich repeat exten	no	no	0.643	0.417	0.436	1e-69
Q9LHF1	494	Leucine-rich repeat exten	no	no	0.643	0.641	0.433	7e-69
Q9SN46	857	Leucine-rich repeat exten	no	no	0.640	0.368	0.432	1e-67
Q9XIB6	847	Pollen-specific leucine-r	no	no	0.665	0.387	0.410	3e-65
Q9LUI1	470	Leucine-rich repeat exten	no	no	0.677	0.710	0.428	7e-64
O65375	744	Leucine-rich repeat exten	no	no	0.657	0.435	0.401	2e-63

>sp|Q8W3M4|Y4744_ARATH Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1

 Score =  334 bits (857), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 173/347 (49%), Positives = 234/347 (67%), Gaps = 11/347 (3%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKA-VAGV 179
           F  +R+ + + VIQRFK  IT DP  +  TW+G D+C+ Y+GF CD  P  K    VA +
Sbjct: 40  FLDQRLAVVYPVIQRFKSLITLDPYNVTKTWIGSDICS-YRGFHCDNPPHNKTAVTVASI 98

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           DFNG++ + P  S+  F+++  DLA+FH NSNNF  ++P     L++LYELD+SNN+  G
Sbjct: 99  DFNGFQLSAP--SIEGFIDQFADLALFHVNSNNFGGTVPSKIVNLRYLYELDISNNRFTG 156

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPE--NIGSTGA 297
            FP  VV +  LTF+D+RFNSFSG +P +I   +L+VLF+N+N F+ +LPE    G+T  
Sbjct: 157 QFPTAVVGMSGLTFIDIRFNSFSGSIPPQILGQNLEVLFINDNGFTASLPEIPGDGTTHI 216

Query: 298 LYVTFANNEFTGPIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
           L++T ANN+F GP+P SI R+   L EVLFLNN FTGC+P+EIGFL+ ++V D+G N+LT
Sbjct: 217 LFLTLANNKFNGPLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIGGNKLT 276

Query: 357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK--LVNLSLSYNYFTQVGPECRKLI 414
           GP+P S  CL  ++ LN A N  +G VPE VC L +  LVNLSLS NYFT VGP CR L+
Sbjct: 277 GPLPLSLMCLEKVEQLNFAGNLLFGAVPEAVCMLLRDNLVNLSLSDNYFTHVGPWCRGLL 336

Query: 415 KRKVLDVRMNCILDLPNQRSREECGKFFSESKK--CPNERSLTLVPC 459
           ++ VLDV  NCI   P QRS +EC +FF + KK  CP+    +   C
Sbjct: 337 EKGVLDVGNNCIPFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSC 383

Arabidopsis thaliana (taxid: 3702)

>sp|O81765|PLRX4_ARATH Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1

 Score =  275 bits (704), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 151/348 (43%), Positives = 200/348 (57%), Gaps = 13/348 (3%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCD-VRPDIKKKAVAGV 179
           FA+ R++ A+  +Q +KK I  DP      W GP VC  Y G VC     D     VAGV
Sbjct: 81  FANTRLKRAYIALQAWKKAIFSDPFNTTGNWHGPHVCG-YTGVVCAPALDDSDVTVVAGV 139

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           D NG    G    L   L  + D+A+FH NSN F   IPK   KLK ++E DVSNN+  G
Sbjct: 140 DLNGADIAG---HLPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVG 196

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP  V++  ++ + DLRFN F G VP E+F  +LD +FLN+N+F+  +PE++G + A  
Sbjct: 197 PFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESLGESPASV 256

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
           VTFANN+FTG IP SIG  K L E++F++N   GC P EIG LSN TVFD   N   G +
Sbjct: 257 VTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRL 316

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRK-- 417
           P SF  L+S++ ++++ N+  G VP  +CQLP LVNL+ SYNYF+  G  C     RK  
Sbjct: 317 PTSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEI 376

Query: 418 VLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRST 465
            LD   NC+   P QRS +EC    +    C  ++      CA   ST
Sbjct: 377 ALDDTRNCLASRPEQRSAQECAVVINRPVDCSKDK------CAGGSST 418

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIL9|PLRX3_ARATH Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1

 Score =  268 bits (684), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/333 (41%), Positives = 194/333 (58%), Gaps = 4/333 (1%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVD 180
           FA+ R++ A+  +Q +KK +  DP      W GP VC     F      D     VAGVD
Sbjct: 55  FANHRLKRAYIALQAWKKAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAGVD 114

Query: 181 FNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG 240
            NG    G    L   L  + D+A+FH NSN F   IPK   KL  ++E DVSNN+  G 
Sbjct: 115 LNGADIAG---HLPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGP 171

Query: 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYV 300
           FP  V++   + F+D+R+N F G VP E+F  DLD +FLNNN+F+  +P+++G + A  V
Sbjct: 172 FPSVVLSWPAVKFIDVRYNDFEGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVV 231

Query: 301 TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIP 360
           TFA+N+F+G IP SIG  K L E++F +N   GC P EIG L+N  VFD   N  TG +P
Sbjct: 232 TFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLP 291

Query: 361 HSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV-L 419
            SF  L+SM+  +++ N+  G +PE +C+LPKLVNL+ +YNYF   G  C    ++++ L
Sbjct: 292 PSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIAL 351

Query: 420 DVRMNCILDLPNQRSREECGKFFSESKKCPNER 452
           D   NC+ D P QRS +EC    S    C  ++
Sbjct: 352 DDTRNCLPDRPKQRSAKECAVVISRPVDCSKDK 384

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/337 (41%), Positives = 197/337 (58%), Gaps = 12/337 (3%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCD-VRPDIKKKAVAGV 179
           FA+ R++ A+  +Q +KK    DP   A  W+GPDVC+ YKG  C     D     VAG+
Sbjct: 67  FANNRLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCS-YKGVFCAPALDDPSVLVVAGI 125

Query: 180 DFNGYRFNG---PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK 236
           D N     G   P+  L      L D+A+FH NSN F   IPK  SKL  +YE DVSNN+
Sbjct: 126 DLNHADIAGYLPPELGL------LTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNR 179

Query: 237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTG 296
             G FP   ++  +L FLD+R+N F G +P EIF  DLD +FLNNN+F   +PE IG + 
Sbjct: 180 FVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKST 239

Query: 297 ALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
           A  VTFA+N+F+G IP +IG+ K L E++F+ N  +GCLP EIG L+N TVFD  +N   
Sbjct: 240 ASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFV 299

Query: 357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR-KLIK 415
           G +P +   L++++ ++ + N+F G V + +C+LPKL N + SYN+F      C     +
Sbjct: 300 GSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQ 359

Query: 416 RKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNER 452
            K  D   NC+ + PNQ+S +EC    S    C  ++
Sbjct: 360 EKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCSKDK 396

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1

 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/325 (43%), Positives = 193/325 (59%), Gaps = 8/325 (2%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
           F + R++ A+  +Q +K+ I  DP    + W+G +VCN Y G  C    D +K + VAG+
Sbjct: 61  FENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCN-YTGVFCSPALDNRKIRTVAGI 119

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           D N     G    L + L  L DLA+FH NSN F  ++P   ++LK L+ELD+SNN+  G
Sbjct: 120 DLNHADIAG---YLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAG 176

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP  V+ + +L FLDLRFN F G VP E+F  DLD +F+N+N+F   LPEN G +    
Sbjct: 177 KFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSV 236

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
           +  ANN F G +PSS+   K L E++F+NN    CLP +IG L N TVFDV  N L GP+
Sbjct: 237 IVLANNRFHGCVPSSLVEMKNLNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPL 296

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVL 419
           P S G + S++ LN+A N   G +P  +CQLPKL N + SYN+FT   P C +L +    
Sbjct: 297 PESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE---F 353

Query: 420 DVRMNCILDLPNQRSREECGKFFSE 444
           D R NC+   P QRS  +C  F S 
Sbjct: 354 DDRRNCLPGRPAQRSPGQCKAFLSR 378

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1

 Score =  261 bits (668), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 141/325 (43%), Positives = 192/325 (59%), Gaps = 8/325 (2%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
           F + R++ A+  +Q +K+ I  DP  I   W+G +VCN Y G  C    D +K + VAG+
Sbjct: 69  FENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCN-YTGVFCSKALDNRKIRTVAGI 127

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           D N     G    L + L  L DLA+FH NSN F  ++P    +LK L+ELD+SNN+  G
Sbjct: 128 DLNHADIAG---YLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAG 184

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP  V+++ +L FLDLRFN F G VP E+F  +LD +F+N+N+F   LPEN G +    
Sbjct: 185 KFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSV 244

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
           +  ANN F G IP+S+   K L E++F+NN    CLP +IG L N TVFDV  N L GP+
Sbjct: 245 IVLANNHFHGCIPTSLVEMKNLNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPL 304

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVL 419
           P S G +  ++ LN+A N   G +P  +CQLPKL N + SYN+FT   P C +L +    
Sbjct: 305 PESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSE---F 361

Query: 420 DVRMNCILDLPNQRSREECGKFFSE 444
           D R NC+   P QRS  +C  F S 
Sbjct: 362 DDRRNCLPGRPAQRSSRQCSAFLSR 386

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2

 Score =  257 bits (657), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 192/324 (59%), Gaps = 8/324 (2%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
           F + R++ A+  +Q +K+ I  DP      W+G DVC+ Y G  C    D ++ + VAG+
Sbjct: 73  FENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCS-YTGVYCAPALDNRRIRTVAGI 131

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           D N     G    L   L  L DLA+FH NSN F  ++P   ++LK L+ELD+SNN+  G
Sbjct: 132 DLNHADIAG---YLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAG 188

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP  V+ + +L FLDLRFN F GPVP E+F  DLD +F+N+N+F   LP+N+G +    
Sbjct: 189 IFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSPVSV 248

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
           +  ANN F G IP+S+G  + L E++F+ N F  CLP +IG L N TVFD   N L G +
Sbjct: 249 IVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSL 308

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVL 419
           P S G + SM+ LN+A N+F G +P  +CQLP+L N + SYN+FT   P C  L      
Sbjct: 309 PASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGL---PGF 365

Query: 420 DVRMNCILDLPNQRSREECGKFFS 443
           D R NC+   P QRS  +C  F S
Sbjct: 366 DDRRNCLPARPAQRSPGQCAAFSS 389

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/334 (41%), Positives = 185/334 (55%), Gaps = 6/334 (1%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCD-VRPDIKKKAVAGV 179
           F ++R++ A+  +Q +KK I  DP      W+G DVC+ Y G  C     D     VAGV
Sbjct: 54  FENDRLKRAYIALQAWKKAIYSDPFKTTANWVGSDVCS-YNGVYCAPALDDDSLTVVAGV 112

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           D N     G    L   L  + DLA+FH NSN F   IPK  SKL  +YE DVSNN+  G
Sbjct: 113 DLNHADIAG---HLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNRFVG 169

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP   ++  +L FLDLR+N F G +P+EIF  DLD +FLNNN+F   +P  IG + A  
Sbjct: 170 QFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSKASV 229

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
           VTFANN+F+G IP SIG  K L E++F  N  TGC P EIG L+N TVFD   N   G +
Sbjct: 230 VTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSL 289

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR-KLIKRKV 418
           P +   L+S++ L+L+ N+  G V +  C+LP L +   SYN+F      C       K 
Sbjct: 290 PSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAESCVPGRNNGKQ 349

Query: 419 LDVRMNCILDLPNQRSREECGKFFSESKKCPNER 452
            D   NC+ + P+Q+  ++C    S    C  ++
Sbjct: 350 FDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKDK 383

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUI1|LRX6_ARATH Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1

 Score =  245 bits (625), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 148/345 (42%), Positives = 194/345 (56%), Gaps = 11/345 (3%)

Query: 108 PPRPPKPPSPFGP-FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCD 166
           PP  P    PF P   + R+  AF  +Q +K  IT DP G  + W GP+VCN Y G  C 
Sbjct: 32  PPINPCFAHPFLPPITNPRLLKAFTALQAWKFTITSDPNGFTSNWCGPNVCN-YTGVFCA 90

Query: 167 VRPDI-KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK 225
              D      VAG+D N     G    L   L  L DLA+FH NSN F   +PK    L 
Sbjct: 91  PALDNPYVLTVAGIDLNHANIAG---YLPLELGLLTDLALFHINSNRFQGQLPKTLKCLH 147

Query: 226 FLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFS 285
            L+ELDVSNNKL G FP  + ++ +L FLD+RFN F G VP+++F L+LD LF+N+NKF 
Sbjct: 148 LLHELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQ 207

Query: 286 QNLPENIGSTGALYVTFANNEFTGPI--PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLS 343
             LP NIG++    +  ANN+  G    PS     K L E++  N+  TGCL  EIG L+
Sbjct: 208 FRLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLN 267

Query: 344 NSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYF 403
             TVFDV  N L G +P + G + S++ LN+A N+F G +PE +C+LP+L N + SYN+F
Sbjct: 268 QLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSYNFF 327

Query: 404 TQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKC 448
           +   P C +L   +  D R NC+   P QRS  EC  F S    C
Sbjct: 328 SGEPPACLRL---QEFDDRRNCLPSRPMQRSLAECKSFSSYPIDC 369

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/331 (40%), Positives = 194/331 (58%), Gaps = 7/331 (2%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDI-KKKAVAGV 179
           F + +++ A+  +Q +KK I  DP      W G DVC+ Y G  C   P   K + VAG+
Sbjct: 46  FENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCS-YNGIYCAPSPSYPKTRVVAGI 104

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           D N     G    L+  L  L DLA+FH NSN F   +P   +++K LYELD+SNN+  G
Sbjct: 105 DLNHADMAG---YLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVG 161

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP  V+++ +L FLDLR+N F G +P+++F  +LD +FLN+N+F   +P+N+G++    
Sbjct: 162 KFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSA 221

Query: 300 VTFANNEFTGPIPSSIGR-AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358
           +  A+N   G IP SIG+  K L E++  N+  TGCLP +IG L   TVFD+ +NRL GP
Sbjct: 222 LVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGP 281

Query: 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRK 417
           +P S G + S++ L++A N F G +P  +CQL  L N + S NYF+   P C   L+   
Sbjct: 282 LPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLLADI 341

Query: 418 VLDVRMNCILDLPNQRSREECGKFFSESKKC 448
           V++  MNCI  L  QRS ++C    +    C
Sbjct: 342 VVNGTMNCITGLARQRSDKQCSSLLARPVDC 372

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
337733638	448	leucine-rich repeat family protein [Citr	0.756	0.832	0.975	0.0
224105587	352	predicted protein [Populus trichocarpa]	0.701	0.982	0.654	1e-129
255555345	510	serine-threonine protein kinase, plant-t	0.738	0.713	0.638	1e-127
15222811	494	leucine-rich repeat-like protein [Arabid	0.742	0.740	0.581	1e-115
297852668	478	hypothetical protein ARALYDRAFT_474107 [	0.740	0.763	0.561	1e-111
15230349	493	leucine-rich repeat-containing protein [	0.691	0.691	0.598	1e-111
297834850	494	leucine-rich repeat family protein [Arab	0.730	0.728	0.568	1e-109
224060520	342	predicted protein [Populus trichocarpa]	0.681	0.982	0.563	1e-102
356519731	417	PREDICTED: uncharacterized protein At4g0	0.681	0.805	0.560	1e-102
225458697	437	PREDICTED: uncharacterized protein At4g0	0.768	0.867	0.484	1e-100

>gi|337733638|gb|AEI72268.1| leucine-rich repeat family protein [Citrus trifoliata]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/373 (97%), Positives = 370/373 (99%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVD 180
           FAS+RIQLAFKVIQRFKKRITYDPQGIA TW+GPDVCNKYKGFVCDVRPDIKKKAVAGVD
Sbjct: 76  FASDRIQLAFKVIQRFKKRITYDPQGIAKTWVGPDVCNKYKGFVCDVRPDIKKKAVAGVD 135

Query: 181 FNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG 240
           FNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG
Sbjct: 136 FNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG 195

Query: 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYV 300
           FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYV
Sbjct: 196 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYV 255

Query: 301 TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIP 360
           TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIP
Sbjct: 256 TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIP 315

Query: 361 HSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLD 420
           HSFGCLS MQ+LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLD
Sbjct: 316 HSFGCLSGMQFLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLD 375

Query: 421 VRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPA 480
           VRMNCILDLPNQRS EECGKFFSESKKCPNERSLTLVPCARNR+T+N+TETFDKKLTAPA
Sbjct: 376 VRMNCILDLPNQRSPEECGKFFSESKKCPNERSLTLVPCARNRNTLNITETFDKKLTAPA 435

Query: 481 PSPRTYDALKKHF 493
           PSPRTYDALKKHF
Sbjct: 436 PSPRTYDALKKHF 448

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105587|ref|XP_002313864.1| predicted protein [Populus trichocarpa] gi|222850272|gb|EEE87819.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/350 (65%), Positives = 273/350 (78%), Gaps = 4/350 (1%)

Query: 145 QGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLA 204
            GI   W+G DVCN Y GF C   PD K  A+A  DFNGY F GPD  L+ FL++L DL+
Sbjct: 1   MGITKKWVGNDVCN-YPGFKCATVPDQKVTALAAADFNGYSFGGPDLQLTGFLDRLLDLS 59

Query: 205 IFHANSNNFTKSIPKM--TSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFS 262
           IFHANSNNFT  +PK   TS++++L+E+D SNNK  GGFPM V+   NLTFLD+RFNSFS
Sbjct: 60  IFHANSNNFTGPVPKSIGTSRVRYLFEVDFSNNKYSGGFPMSVLQATNLTFLDIRFNSFS 119

Query: 263 GPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
           G VPAE+F LDLDVLF+NNNKFSQ LP N+GST  LY+T ANN+F+GPIP SIG A+ LL
Sbjct: 120 GSVPAEVFTLDLDVLFINNNKFSQQLPGNLGSTPVLYLTLANNKFSGPIPRSIGNARNLL 179

Query: 323 EVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP 382
           EVLFLNN   GCLPYEIG L  + VFDVG+N+LTGPIPHSF CL  M+ LNLA+N+FYGP
Sbjct: 180 EVLFLNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGP 239

Query: 383 VPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFF 442
           VPE+VC LP+L NLSLSYNYFTQVGPECRKLIK+++LDVRMNCILDLP QRS  +C KFF
Sbjct: 240 VPEMVCDLPRLANLSLSYNYFTQVGPECRKLIKKRILDVRMNCILDLPGQRSAADCAKFF 299

Query: 443 SESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSPRTYDALKKH 492
           S  + CPNERSL+ +PC +   + +L ET D++  APA +P TY+ALK H
Sbjct: 300 SIKRTCPNERSLSYIPCRKGGYSSSL-ETSDQQSMAPAAAPITYNALKPH 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555345|ref|XP_002518709.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223542090|gb|EEF43634.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/371 (63%), Positives = 276/371 (74%), Gaps = 7/371 (1%)

Query: 126 IQLAFKVIQRFKKRITYDPQGIANTWMGP--DVCNKYKGFVCDVRPDIKKKAVAGVDFNG 183
           I+  +  IQ+FKK IT+DP  I ++W     +VC  YKGF CD+RPD+   AVA  DFNG
Sbjct: 132 IKRDYFTIQKFKKTITHDPFHITDSWKEGVFNVCATYKGFACDIRPDMGVLAVAAADFNG 191

Query: 184 YRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTS--KLKFLYELDVSNNKLFGGF 241
           Y FNGP+F +  FL+KLED+AIFHANSNNFT  +P+      + FLYELD+SNN   GGF
Sbjct: 192 YNFNGPNFQIKGFLDKLEDVAIFHANSNNFTGIVPQNIDIMNINFLYELDLSNNNYTGGF 251

Query: 242 PMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVT 301
           PM V+   NLTFLD+RFN F G VP E+F LDLDVLFLNNN+F Q LPENIGST ALY+T
Sbjct: 252 PMNVLGATNLTFLDIRFNKFYGSVPKEVFNLDLDVLFLNNNQFDQQLPENIGSTSALYLT 311

Query: 302 FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH 361
           FANN FTG IP SIGRAK LLEVLFLNN FTGCLPYEIGFL+ + VFDV  N+LTGPIPH
Sbjct: 312 FANNRFTGSIPRSIGRAKNLLEVLFLNNGFTGCLPYEIGFLTKTRVFDVSCNKLTGPIPH 371

Query: 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDV 421
           SFGCLS ++ LNLA NQFYGPVPEIVC+LP L NLSLS NYFTQVGPECRKLI  + LDV
Sbjct: 372 SFGCLSMIEILNLAKNQFYGPVPEIVCKLPNLQNLSLSGNYFTQVGPECRKLISLRRLDV 431

Query: 422 RMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARN---RSTVNLTETFDKKLTA 478
           R NCIL LPNQR  + C +FFS+ K+C NERS+  +PC +     ST NL +     +  
Sbjct: 432 RNNCILGLPNQRPPKACTEFFSKPKQCANERSMNYIPCKKKGYPSSTQNLYQQSTVAVAP 491

Query: 479 PAPSPRTYDAL 489
            A  PR+YDAL
Sbjct: 492 AAAPPRSYDAL 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222811|ref|NP_175397.1| leucine-rich repeat-like protein [Arabidopsis thaliana] gi|10120434|gb|AAG13059.1|AC011807_18 Unknown protein [Arabidopsis thaliana] gi|44681384|gb|AAS47632.1| At1g49750 [Arabidopsis thaliana] gi|45773904|gb|AAS76756.1| At1g49750 [Arabidopsis thaliana] gi|222423160|dbj|BAH19559.1| AT1G49750 [Arabidopsis thaliana] gi|332194350|gb|AEE32471.1| leucine-rich repeat-like protein [Arabidopsis thaliana]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/373 (58%), Positives = 263/373 (70%), Gaps = 7/373 (1%)

Query: 120 PFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGV 179
           PFAS  ++  + V+QRFK  +  D      +W GPD+CNKY G  C + P  K  A+A V
Sbjct: 118 PFASSLLKKVYPVLQRFKDLVADDK---LKSWEGPDICNKYLGLKCAIFPKTKHLALASV 174

Query: 180 DFNGYRFNGPD---FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK 236
            FNG    G       L +FL+KLE++ IFHANSN FT S+P   S LKFLYELD+SNNK
Sbjct: 175 QFNGLNLRGKIGKILKLDNFLDKLEEVTIFHANSNGFTGSVPDF-SNLKFLYELDLSNNK 233

Query: 237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTG 296
           L G FP  V+   NLTFLDLRFNSFSG VP ++F LDLDVLF+NNN   Q LP N+GS  
Sbjct: 234 LTGDFPTSVLKGNNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQKLPLNLGSIT 293

Query: 297 ALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
           ALY+TFANN FTGPIP SIG  KYL EVLFLNN  TGCLPY+IG L+ +TVFDVG N+LT
Sbjct: 294 ALYLTFANNRFTGPIPESIGNIKYLQEVLFLNNKLTGCLPYQIGNLTRATVFDVGFNQLT 353

Query: 357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR 416
           GPIP+SFGCL +M+ LNLA N+FYG +PEIVC++  L N+SLS NYFTQVGP+CRKLIKR
Sbjct: 354 GPIPYSFGCLETMEQLNLAGNKFYGTIPEIVCEIACLQNVSLSNNYFTQVGPKCRKLIKR 413

Query: 417 KVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKL 476
           K++DV MNCILDLPNQ++  EC KFF   + CPN +SL  VPC +N +     +   ++ 
Sbjct: 414 KIMDVSMNCILDLPNQKTPSECAKFFMRKQTCPNSKSLFTVPCDKNPNRGKPDQERLEEE 473

Query: 477 TAPAPSPRTYDAL 489
            A    P TY+ L
Sbjct: 474 KAQVSHPVTYNTL 486

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852668|ref|XP_002894215.1| hypothetical protein ARALYDRAFT_474107 [Arabidopsis lyrata subsp. lyrata] gi|297340057|gb|EFH70474.1| hypothetical protein ARALYDRAFT_474107 [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/372 (56%), Positives = 259/372 (69%), Gaps = 7/372 (1%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVD 180
           FAS  I+  + V+QRFK  +  D      +W GPD+CNKY G  C   P     A+A V 
Sbjct: 103 FASSLIKKVYPVLQRFKGLVADDK---LKSWEGPDICNKYLGLKCATFPGTTDLALASVK 159

Query: 181 FNGYRFNGP---DFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL 237
           FNG +  G       L +FL+KLE++ IFHANSN+F  S+P + SKL +L+ELD+SNNKL
Sbjct: 160 FNGLKLRGKRGKKLLLDNFLDKLEEVTIFHANSNDFIGSVPDI-SKLTYLFELDLSNNKL 218

Query: 238 FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGA 297
            G FP  V+   NLTFLDLRFN FSG VP ++F LDLDVLF+NNN   Q LP N+GS  A
Sbjct: 219 TGDFPTNVLMKNNLTFLDLRFNQFSGSVPPQVFNLDLDVLFINNNNLVQKLPSNLGSITA 278

Query: 298 LYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357
           LY+TFANN FTG IP+SIG  KYL EVLFLNN  TGCLPY+IG L+ +TVFDVG N+LTG
Sbjct: 279 LYLTFANNRFTGSIPASIGNIKYLQEVLFLNNQLTGCLPYQIGNLTRATVFDVGFNQLTG 338

Query: 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRK 417
           PIP+SFGCL +M+ LNLA N+FYG +PEIVC++  L N+SLSYNYFTQVGP+CR LIKRK
Sbjct: 339 PIPYSFGCLETMEQLNLAGNKFYGTIPEIVCEIACLKNVSLSYNYFTQVGPKCRNLIKRK 398

Query: 418 VLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLT 477
           ++DV MNCILDLPNQ++  EC  FF   + C N +SL  VPC +N + V   +   +   
Sbjct: 399 IMDVSMNCILDLPNQKTPSECANFFMRKQTCLNSKSLFTVPCGKNPNRVKPDQERLEDEK 458

Query: 478 APAPSPRTYDAL 489
           A    P +Y+ L
Sbjct: 459 ARVSHPVSYNTL 470

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230349|ref|NP_188563.1| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|11994454|dbj|BAB02456.1| unnamed protein product [Arabidopsis thaliana] gi|332642702|gb|AEE76223.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/344 (59%), Positives = 247/344 (71%), Gaps = 3/344 (0%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVC--NKYKGFVCDVRPDIKKKAVAG 178
           F+S  I+  + VI+ F+  I  DP+ I  TW+G D+C  +KY G  C   P     A+A 
Sbjct: 119 FSSPLIKKVYPVIKNFQTLIEDDPKSILKTWVGTDICAQDKYIGLECAKLPGTNDLALAS 178

Query: 179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF 238
           + FN +   G    L +FL KLE++ IFHANSNNF  S+P   SKLK+L+ELD+SNNKL 
Sbjct: 179 IQFNNFNLGGKKLRLDNFLNKLEEVTIFHANSNNFVGSVPNF-SKLKYLFELDLSNNKLS 237

Query: 239 GGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL 298
           G FP  V+   NLTFLDLRFNSFSG VP ++F LDLDVLF+NNN   Q LPEN+GS  AL
Sbjct: 238 GEFPSSVLKATNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQRLPENLGSITAL 297

Query: 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358
           Y+TFANN FTGPIP SIG  K L EVLFLNN  TGCLPY+IG L+ +TVFDV  N+LTGP
Sbjct: 298 YLTFANNRFTGPIPGSIGDIKSLQEVLFLNNKLTGCLPYQIGNLNRATVFDVELNQLTGP 357

Query: 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV 418
           IP+SFGCL  M+ LNLA N FYG +PEIVC+L  L NLSLSYNYFTQVGP+CR LIKRK+
Sbjct: 358 IPYSFGCLKKMEQLNLARNNFYGTIPEIVCELSALKNLSLSYNYFTQVGPKCRTLIKRKI 417

Query: 419 LDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARN 462
           LDV MNCILDL NQR+  EC KFF   + CPN +S   +PC ++
Sbjct: 418 LDVGMNCILDLTNQRTPWECAKFFLRKQSCPNFKSFFYLPCGKD 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834850|ref|XP_002885307.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297331147|gb|EFH61566.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/366 (56%), Positives = 254/366 (69%), Gaps = 6/366 (1%)

Query: 126 IQLAFKVIQRFKKRITYDPQGIANTWMGPDVC--NKYKGFVCDVRPDIKKKAVAGVDFNG 183
           I+  + VI+ F+  I  DP+ I  TW+G D+C  +KY G  C   P     A+A + FN 
Sbjct: 125 IKNVYSVIKNFQTLIENDPKKILRTWVGTDICAQDKYIGLECAKFPGTNDLALASIQFNN 184

Query: 184 YRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPM 243
           +   G    L +FL KLE++ IFHANSN+F  S+PK  S LK+L+ELD+SNNKL G FP 
Sbjct: 185 FNLGGKKLRLDNFLNKLEEVTIFHANSNSFVGSVPKF-SNLKYLFELDLSNNKLSGEFPS 243

Query: 244 EVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFA 303
            V+   NLTFLDLRFNSFSG VP ++F LDLDVLF+NNN   Q LPEN+GS  ALY+TFA
Sbjct: 244 SVLKATNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQRLPENLGSITALYLTFA 303

Query: 304 NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF 363
           NN FTGPIP SIG  K L EVLFLNN  TGCLPY+IG L+ +TVFDV +N+LTG IP+SF
Sbjct: 304 NNRFTGPIPGSIGDIKSLQEVLFLNNKLTGCLPYQIGNLNRATVFDVESNQLTGLIPYSF 363

Query: 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRM 423
           GCL+ M+ LNLA N FYG +PEIVC+L  L NLSLS NYFTQVGP+CR LIKRK+LDV M
Sbjct: 364 GCLNKMEQLNLARNNFYGTIPEIVCELSALKNLSLSSNYFTQVGPKCRTLIKRKILDVGM 423

Query: 424 NCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPSP 483
           NCILDL NQR+  EC KFF   + CPN +S   VPC ++   +   +   + L   A  P
Sbjct: 424 NCILDLANQRAPWECAKFFLRKQSCPNYKSFFYVPCGKDPHRIKPDQ---EGLDGQASPP 480

Query: 484 RTYDAL 489
            +Y AL
Sbjct: 481 VSYGAL 486

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060520|ref|XP_002300228.1| predicted protein [Populus trichocarpa] gi|222847486|gb|EEE85033.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/341 (56%), Positives = 235/341 (68%), Gaps = 5/341 (1%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKK-AVAGV 179
           F  +R+   F +IQ FK  IT DP  I  TW+GPD+CN YKGF C   PD     A+A +
Sbjct: 2   FLDQRLASVFPIIQVFKDTITSDPFNITQTWVGPDICN-YKGFYCTSPPDNNSAVALASI 60

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           DFNG++ + P  +L  F+++L DLA+FHANSN F+ +I    +KL FLYELD+SNN   G
Sbjct: 61  DFNGFQLSAP--TLDGFIDQLPDLALFHANSNKFSGTISPKITKLPFLYELDISNNNFLG 118

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FPME++ I  L+FLD+RFN F+G VP E+F   LDVLFLNNN F Q LPEN+GST  LY
Sbjct: 119 NFPMEILGIPGLSFLDIRFNFFTGTVPPEVFTQGLDVLFLNNNNFIQKLPENLGSTTVLY 178

Query: 300 VTFANNEFTGPIPSSIGRAKYLL-EVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358
           +T ANN+F GPIP SI +A   L EVLFLNN   GCLPYE+GFLS   +FD GNN LTGP
Sbjct: 179 LTLANNKFIGPIPRSISKASATLKEVLFLNNLLAGCLPYELGFLSELVLFDAGNNLLTGP 238

Query: 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV 418
           +P S GCL+ ++  NL  N  YG VPE+VC L KLVNLSLS NYFT++GP CRKL+   V
Sbjct: 239 LPCSLGCLAKLEQFNLTGNLLYGQVPEVVCALGKLVNLSLSSNYFTELGPTCRKLVNSGV 298

Query: 419 LDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPC 459
           LD++ NCI DLP QRS  EC  F    + CPN  S  L+PC
Sbjct: 299 LDIKKNCIHDLPEQRSVLECDAFSLHPRYCPNPASFNLIPC 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519731|ref|XP_003528523.1| PREDICTED: uncharacterized protein At4g06744-like [Glycine max]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/341 (56%), Positives = 236/341 (69%), Gaps = 5/341 (1%)

Query: 121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPD-IKKKAVAGV 179
           F  +R+   F +IQ FK  IT DP+G+ +TW+GP++CN Y GF CD  PD +    +A +
Sbjct: 48  FIDQRLAQVFPIIQTFKNTITSDPRGVTSTWVGPNICN-YTGFYCDNPPDNLTATTIASI 106

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
           DFNG++   P  +L  F+++L DLA+FHANSN F+  +    + LKFLYELD+SNN   G
Sbjct: 107 DFNGFQLTAP--TLDGFIDQLPDLALFHANSNKFSGIVSPKIAGLKFLYELDLSNNLFSG 164

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
            FP  V+NI  L+FLD+RFNSFSG +P +IF   LDVLFLN+N F   LP N+G+   +Y
Sbjct: 165 AFPTSVLNIPTLSFLDIRFNSFSGTLPPQIFMQTLDVLFLNDNNFMLTLPNNLGNAPVVY 224

Query: 300 VTFANNEFTGPIPSSIGRAK-YLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358
           +T ANN+FTGPIP SIG+A   L+EVL LNN  TGCLPYEIGFL N T+FDVG N LTGP
Sbjct: 225 LTLANNKFTGPIPRSIGKASSTLIEVLLLNNLLTGCLPYEIGFLKNLTLFDVGGNLLTGP 284

Query: 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV 418
           IP SFGCL  ++ LNLA N  YG VPE+VC L  L N SLSYNYFT+VGP C+ LI+R V
Sbjct: 285 IPWSFGCLKKVEQLNLARNFLYGQVPEVVCALGNLANFSLSYNYFTKVGPLCKMLIQRGV 344

Query: 419 LDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPC 459
           LDVR NCI  LP+QRS  EC  FF   K C +      VPC
Sbjct: 345 LDVRKNCIFGLPDQRSVRECMAFFLIPKSCSHPALFNFVPC 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458697|ref|XP_002284965.1| PREDICTED: uncharacterized protein At4g06744 [Vitis vinifera] gi|147790680|emb|CAN61024.1| hypothetical protein VITISV_001144 [Vitis vinifera] gi|302142278|emb|CBI19481.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/384 (48%), Positives = 248/384 (64%), Gaps = 5/384 (1%)

Query: 108 PPRPPKPPSPFGPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDV 167
           P  P +P +  GP ++    L   + Q  K+ IT DPQ    +W+G + C  +KGF CD 
Sbjct: 55  PLLPRQPANRPGPLSNR--NLVLFITQELKRNITSDPQNYTGSWVGRNYC-LFKGFYCDT 111

Query: 168 RPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFL 227
            PD     +AG+DFNG RF G + +   F+  L D+AIFHANSNNF+  I    +KL++ 
Sbjct: 112 VPDKNITGLAGIDFNGARFGG-NLNFYRFIRFLPDIAIFHANSNNFSGVIRPNINKLRYF 170

Query: 228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQN 287
           YE+D+SNN   GGFP+ V+    LTF+D+RFN+++GPVP  +F +  DVLF+NNN F+Q 
Sbjct: 171 YEIDLSNNGFQGGFPVSVIGALQLTFVDVRFNTYNGPVPPRVFSIQTDVLFINNNNFAQR 230

Query: 288 LPENIGSTGALYVTFANNEFTGPIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNST 346
           +P   G+T A Y+T ANN F G IP SIGR  + L EVLFL N  +GCLPYEIGFL  +T
Sbjct: 231 IPSAFGNTTARYITLANNGFIGSIPQSIGRTWQTLTEVLFLKNRLSGCLPYEIGFLQMAT 290

Query: 347 VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406
           VFD G N LTGPIP SF CL  +Q L+LA NQFYG +P+ +C+LP   N +LSYNYF  +
Sbjct: 291 VFDAGFNTLTGPIPQSFACLKKLQLLSLAHNQFYGRIPDSLCRLPNAYNFTLSYNYFNSI 350

Query: 407 GPECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTV 466
           GP C++L+    LDVR NCI  LPNQRS  EC  F+S S+ CP   S  ++ C+   +++
Sbjct: 351 GPYCKRLVNIGRLDVRRNCITGLPNQRSAAECTAFYSVSRTCPRPGSFNVITCSNPAASL 410

Query: 467 NLTETFDKKLTAPAPSPRTYDALK 490
           +  +    +  APAPSP TY AL+
Sbjct: 411 SSAQVASLQAMAPAPSPVTYKALE 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
TAIR|locus:2012171	494	AT1G49750 [Arabidopsis thalian	0.742	0.740	0.581	1.8e-112
TAIR|locus:1005716458	404	AT4G06744 [Arabidopsis thalian	0.724	0.883	0.479	4.6e-89
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.640	0.368	0.432	1.1e-68
TAIR|locus:2118949	699	AT4G33970 [Arabidopsis thalian	0.711	0.502	0.423	1.7e-68
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.640	0.415	0.438	3.5e-68
TAIR|locus:2094854	494	AT3G24480 [Arabidopsis thalian	0.651	0.649	0.433	1.5e-67
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.718	0.486	0.404	5.1e-67
TAIR|locus:2085889	956	AT3G19020 [Arabidopsis thalian	0.665	0.343	0.419	2e-66
TAIR|locus:2094389	470	AT3G22800 "AT3G22800" [Arabido	0.653	0.685	0.430	1.4e-64
TAIR|locus:2008895	744	LRX1 "AT1G12040" [Arabidopsis	0.657	0.435	0.401	3e-62

TAIR|locus:2012171 AT1G49750 [Arabidopsis thaliana (taxid:3702)]

 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 217/373 (58%), Positives = 263/373 (70%)

Query:   120 PFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGV 179
             PFAS  ++  + V+QRFK  +  D      +W GPD+CNKY G  C + P  K  A+A V
Sbjct:   118 PFASSLLKKVYPVLQRFKDLVADDK---LKSWEGPDICNKYLGLKCAIFPKTKHLALASV 174

Query:   180 DFNGYRFNGPD---FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK 236
              FNG    G       L +FL+KLE++ IFHANSN FT S+P   S LKFLYELD+SNNK
Sbjct:   175 QFNGLNLRGKIGKILKLDNFLDKLEEVTIFHANSNGFTGSVPDF-SNLKFLYELDLSNNK 233

Query:   237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTG 296
             L G FP  V+   NLTFLDLRFNSFSG VP ++F LDLDVLF+NNN   Q LP N+GS  
Sbjct:   234 LTGDFPTSVLKGNNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQKLPLNLGSIT 293

Query:   297 ALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
             ALY+TFANN FTGPIP SIG  KYL EVLFLNN  TGCLPY+IG L+ +TVFDVG N+LT
Sbjct:   294 ALYLTFANNRFTGPIPESIGNIKYLQEVLFLNNKLTGCLPYQIGNLTRATVFDVGFNQLT 353

Query:   357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR 416
             GPIP+SFGCL +M+ LNLA N+FYG +PEIVC++  L N+SLS NYFTQVGP+CRKLIKR
Sbjct:   354 GPIPYSFGCLETMEQLNLAGNKFYGTIPEIVCEIACLQNVSLSNNYFTQVGPKCRKLIKR 413

Query:   417 KVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKL 476
             K++DV MNCILDLPNQ++  EC KFF   + CPN +SL  VPC +N +     +   ++ 
Sbjct:   414 KIMDVSMNCILDLPNQKTPSECAKFFMRKQTCPNSKSLFTVPCDKNPNRGKPDQERLEEE 473

Query:   477 TAPAPSPRTYDAL 489
              A    P TY+ L
Sbjct:   474 KAQVSHPVTYNTL 486

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

TAIR|locus:1005716458 AT4G06744 [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 177/369 (47%), Positives = 244/369 (66%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKA-VAGV 179
             F  +R+ + + VIQRFK  IT DP  +  TW+G D+C+ Y+GF CD  P  K    VA +
Sbjct:    40 FLDQRLAVVYPVIQRFKSLITLDPYNVTKTWIGSDICS-YRGFHCDNPPHNKTAVTVASI 98

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             DFNG++ + P  S+  F+++  DLA+FH NSNNF  ++P     L++LYELD+SNN+  G
Sbjct:    99 DFNGFQLSAP--SIEGFIDQFADLALFHVNSNNFGGTVPSKIVNLRYLYELDISNNRFTG 156

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPE--NIGSTGA 297
              FP  VV +  LTF+D+RFNSFSG +P +I   +L+VLF+N+N F+ +LPE    G+T  
Sbjct:   157 QFPTAVVGMSGLTFIDIRFNSFSGSIPPQILGQNLEVLFINDNGFTASLPEIPGDGTTHI 216

Query:   298 LYVTFANNEFTGPIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
             L++T ANN+F GP+P SI R+   L EVLFLNN FTGC+P+EIGFL+ ++V D+G N+LT
Sbjct:   217 LFLTLANNKFNGPLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIGGNKLT 276

Query:   357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK--LVNLSLSYNYFTQVGPECRKLI 414
             GP+P S  CL  ++ LN A N  +G VPE VC L +  LVNLSLS NYFT VGP CR L+
Sbjct:   277 GPLPLSLMCLEKVEQLNFAGNLLFGAVPEAVCMLLRDNLVNLSLSDNYFTHVGPWCRGLL 336

Query:   415 KRKVLDVRMNCILDLPNQRSREECGKFFSESKK--CPNERSLTLVPCARNRSTVNLTETF 472
             ++ VLDV  NCI   P QRS +EC +FF + KK  CP+    +   C  +  + + +  F
Sbjct:   337 EKGVLDVGNNCIPFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSCRYSHISSSSSSAF 396

Query:   473 DKKLTAPAP 481
                + AP+P
Sbjct:   397 -MPMVAPSP 404

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 140/324 (43%), Positives = 192/324 (59%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
             F + R++ A+  +Q +K+ I  DP      W+G DVC+ Y G  C    D ++ + VAG+
Sbjct:    73 FENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCS-YTGVYCAPALDNRRIRTVAGI 131

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D N     G    L   L  L DLA+FH NSN F  ++P   ++LK L+ELD+SNN+  G
Sbjct:   132 DLNHADIAG---YLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAG 188

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP  V+ + +L FLDLRFN F GPVP E+F  DLD +F+N+N+F   LP+N+G +    
Sbjct:   189 IFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSPVSV 248

Query:   300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             +  ANN F G IP+S+G  + L E++F+ N F  CLP +IG L N TVFD   N L G +
Sbjct:   249 IVVANNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSL 308

Query:   360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVL 419
             P S G + SM+ LN+A N+F G +P  +CQLP+L N + SYN+FT   P C  L      
Sbjct:   309 PASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGL---PGF 365

Query:   420 DVRMNCILDLPNQRSREECGKFFS 443
             D R NC+   P QRS  +C  F S
Sbjct:   366 DDRRNCLPARPAQRSPGQCAAFSS 389

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2118949 AT4G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 156/368 (42%), Positives = 206/368 (55%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVC-DVRPDIKKKAVAGV 179
             FA+ R++ A+  +Q +KK I  DP      W GP VC  Y G VC     D     VAGV
Sbjct:    81 FANTRLKRAYIALQAWKKAIFSDPFNTTGNWHGPHVCG-YTGVVCAPALDDSDVTVVAGV 139

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D NG    G    L   L  + D+A+FH NSN F   IPK   KLK ++E DVSNN+  G
Sbjct:   140 DLNGADIAG---HLPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVG 196

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP  V++  ++ + DLRFN F G VP E+F  +LD +FLN+N+F+  +PE++G + A  
Sbjct:   197 PFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESLGESPASV 256

Query:   300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             VTFANN+FTG IP SIG  K L E++F++N   GC P EIG LSN TVFD   N   G +
Sbjct:   257 VTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRL 316

Query:   360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRK-- 417
             P SF  L+S++ ++++ N+  G VP  +CQLP LVNL+ SYNYF+  G  C     RK  
Sbjct:   317 PTSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEI 376

Query:   418 VLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLT 477
              LD   NC+   P QRS +EC    +    C  ++      CA   ST +      K   
Sbjct:   377 ALDDTRNCLASRPEQRSAQECAVVINRPVDCSKDK------CAGGSSTPSKPSPVHK--- 427

Query:   478 APAPSPRT 485
              P P P T
Sbjct:   428 -PTPVPTT 434

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 142/324 (43%), Positives = 193/324 (59%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
             F + R++ A+  +Q +K+ I  DP    + W+G +VCN Y G  C    D +K + VAG+
Sbjct:    61 FENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCN-YTGVFCSPALDNRKIRTVAGI 119

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D N     G    L + L  L DLA+FH NSN F  ++P   ++LK L+ELD+SNN+  G
Sbjct:   120 DLNHADIAG---YLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAG 176

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP  V+ + +L FLDLRFN F G VP E+F  DLD +F+N+N+F   LPEN G +    
Sbjct:   177 KFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSV 236

Query:   300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             +  ANN F G +PSS+   K L E++F+NN    CLP +IG L N TVFDV  N L GP+
Sbjct:   237 IVLANNRFHGCVPSSLVEMKNLNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPL 296

Query:   360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVL 419
             P S G + S++ LN+A N   G +P  +CQLPKL N + SYN+FT   P C +L +    
Sbjct:   297 PESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE---F 353

Query:   420 DVRMNCILDLPNQRSREECGKFFS 443
             D R NC+   P QRS  +C  F S
Sbjct:   354 DDRRNCLPGRPAQRSPGQCKAFLS 377

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094854 AT3G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 143/330 (43%), Positives = 194/330 (58%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
             F + R++ A+  +Q +K+ I  DP  I   W+G +VCN Y G  C    D +K + VAG+
Sbjct:    69 FENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCN-YTGVFCSKALDNRKIRTVAGI 127

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D N     G    L + L  L DLA+FH NSN F  ++P    +LK L+ELD+SNN+  G
Sbjct:   128 DLNHADIAG---YLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAG 184

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP  V+++ +L FLDLRFN F G VP E+F  +LD +F+N+N+F   LPEN G +    
Sbjct:   185 KFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSV 244

Query:   300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             +  ANN F G IP+S+   K L E++F+NN    CLP +IG L N TVFDV  N L GP+
Sbjct:   245 IVLANNHFHGCIPTSLVEMKNLNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPL 304

Query:   360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVL 419
             P S G +  ++ LN+A N   G +P  +CQLPKL N + SYN+FT   P C +L +    
Sbjct:   305 PESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSE---F 361

Query:   420 DVRMNCILDLPNQRSREECGKFFSE-SKKC 448
             D R NC+   P QRS  +C  F S  S  C
Sbjct:   362 DDRRNCLPGRPAQRSSRQCSAFLSRPSVDC 391

GO:0005576 "extracellular region" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 148/366 (40%), Positives = 207/366 (56%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKKAV-AGV 179
             FA+ R++ A+  +Q +KK +  DP      W GP VC  Y G  C    D    AV AGV
Sbjct:    55 FANHRLKRAYIALQAWKKAVYSDPFNTTGNWHGPHVCG-YTGVFCAPALDDPDVAVVAGV 113

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D NG    G    L   L  + D+A+FH NSN F   IPK   KL  ++E DVSNN+  G
Sbjct:   114 DLNGADIAG---HLPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVG 170

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP  V++   + F+D+R+N F G VP E+F  DLD +FLNNN+F+  +P+++G + A  
Sbjct:   171 PFPSVVLSWPAVKFIDVRYNDFEGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASV 230

Query:   300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             VTFA+N+F+G IP SIG  K L E++F +N   GC P EIG L+N  VFD   N  TG +
Sbjct:   231 VTFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVL 290

Query:   360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV- 418
             P SF  L+SM+  +++ N+  G +PE +C+LPKLVNL+ +YNYF   G  C    ++++ 
Sbjct:   291 PPSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIA 350

Query:   419 LDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTA 478
             LD   NC+ D P QRS +EC    S    C  ++      CA   S    +++     T 
Sbjct:   351 LDDTRNCLPDRPKQRSAKECAVVISRPVDCSKDK------CAGGSSQATPSKSPSPVPTR 404

Query:   479 PAPSPR 484
             P   P+
Sbjct:   405 PVHKPQ 410

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2085889 AT3G19020 [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 2.0e-66, P = 2.0e-66
 Identities = 140/334 (41%), Positives = 196/334 (58%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVC-DVRPDIKKKAVAGV 179
             FA+ R++ A+  +Q +KK    DP   A  W+GPDVC+ YKG  C     D     VAG+
Sbjct:    67 FANNRLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCS-YKGVFCAPALDDPSVLVVAGI 125

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D N     G    L   L  L D+A+FH NSN F   IPK  SKL  +YE DVSNN+  G
Sbjct:   126 DLNHADIAG---YLPPELGLLTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVG 182

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP   ++  +L FLD+R+N F G +P EIF  DLD +FLNNN+F   +PE IG + A  
Sbjct:   183 PFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASV 242

Query:   300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             VTFA+N+F+G IP +IG+ K L E++F+ N  +GCLP EIG L+N TVFD  +N   G +
Sbjct:   243 VTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSL 302

Query:   360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRK-LIKRKV 418
             P +   L++++ ++ + N+F G V + +C+LPKL N + SYN+F      C     + K 
Sbjct:   303 PSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQ 362

Query:   419 LDVRMNCILDLPNQRSREECGKFFSESKKCPNER 452
              D   NC+ + PNQ+S +EC    S    C  ++
Sbjct:   363 FDDTSNCLQNRPNQKSAKECLPVVSRPVDCSKDK 396

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2094389 AT3G22800 "AT3G22800" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 143/332 (43%), Positives = 191/332 (57%)

Query:   120 PFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKKK-AVAG 178
             P  + R+  AF  +Q +K  IT DP G  + W GP+VCN Y G  C    D      VAG
Sbjct:    45 PITNPRLLKAFTALQAWKFTITSDPNGFTSNWCGPNVCN-YTGVFCAPALDNPYVLTVAG 103

Query:   179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF 238
             +D N     G    L   L  L DLA+FH NSN F   +PK    L  L+ELDVSNNKL 
Sbjct:   104 IDLNHANIAG---YLPLELGLLTDLALFHINSNRFQGQLPKTLKCLHLLHELDVSNNKLS 160

Query:   239 GGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL 298
             G FP  + ++ +L FLD+RFN F G VP+++F L+LD LF+N+NKF   LP NIG++   
Sbjct:   161 GEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFRLPRNIGNSPVS 220

Query:   299 YVTFANNEFTGP-IPSSIGR-AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
              +  ANN+  G  +P S  +  K L E++  N+  TGCL  EIG L+  TVFDV  N L 
Sbjct:   221 VLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLV 280

Query:   357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR 416
             G +P + G + S++ LN+A N+F G +PE +C+LP+L N + SYN+F+   P C +L   
Sbjct:   281 GSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSYNFFSGEPPACLRL--- 337

Query:   417 KVLDVRMNCILDLPNQRSREECGKFFSESKKC 448
             +  D R NC+   P QRS  EC  F S    C
Sbjct:   338 QEFDDRRNCLPSRPMQRSLAECKSFSSYPIDC 369

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2008895 LRX1 "AT1G12040" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 133/331 (40%), Positives = 194/331 (58%)

Query:   121 FASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYKGFVCDVRPDIKK-KAVAGV 179
             F + +++ A+  +Q +KK I  DP      W G DVC+ Y G  C   P   K + VAG+
Sbjct:    46 FENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCS-YNGIYCAPSPSYPKTRVVAGI 104

Query:   180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             D N     G    L+  L  L DLA+FH NSN F   +P   +++K LYELD+SNN+  G
Sbjct:   105 DLNHADMAG---YLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVG 161

Query:   240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY 299
              FP  V+++ +L FLDLR+N F G +P+++F  +LD +FLN+N+F   +P+N+G++    
Sbjct:   162 KFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSA 221

Query:   300 VTFANNEFTGPIPSSIGR-AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358
             +  A+N   G IP SIG+  K L E++  N+  TGCLP +IG L   TVFD+ +NRL GP
Sbjct:   222 LVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGP 281

Query:   359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR-KLIKRK 417
             +P S G + S++ L++A N F G +P  +CQL  L N + S NYF+   P C   L+   
Sbjct:   282 LPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLLADI 341

Query:   418 VLDVRMNCILDLPNQRSREECGKFFSESKKC 448
             V++  MNCI  L  QRS ++C    +    C
Sbjct:   342 VVNGTMNCITGLARQRSDKQCSSLLARPVDC 372

GO:0009927 "histidine phosphotransfer kinase activity" evidence=NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA;IMP

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	493
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-12
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-12
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-12
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-12
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-11
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-10
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	4e-10
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	5e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-09
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	2e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-09
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	6e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-09
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	7e-09
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	7e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-09
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-08
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	1e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-08
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-08
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-08
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	3e-08
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-08
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-08
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	4e-08
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-08
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	7e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-08
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	8e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-07
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	1e-07
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-07
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	1e-07
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-07
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	2e-07
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	3e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	4e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	5e-07
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	5e-07
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-07
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	6e-07
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-07
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	8e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-07
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	9e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	1e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
pfam14179	110	pfam14179, YppG, YppG-like protein	1e-06
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-06
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	2e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-06
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	3e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	3e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-06
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-06
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	4e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	4e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	4e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-06
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	5e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-06
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	5e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	6e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	7e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	7e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-06
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	9e-06
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	9e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	1e-05
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	1e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	1e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	1e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	1e-05
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	1e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	1e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-05
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	1e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	2e-05
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	2e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	2e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	2e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-05
PHA01732	94	PHA01732, PHA01732, proline-rich protein	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	3e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	3e-05
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	3e-05
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	3e-05
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	3e-05
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	3e-05
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	3e-05
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	3e-05
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	4e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	4e-05
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	4e-05
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	4e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-05
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	5e-05
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	5e-05
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	5e-05
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	5e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	6e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	6e-05
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	6e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-05
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-05
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	7e-05
PHA01732	94	PHA01732, PHA01732, proline-rich protein	7e-05
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	7e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-05
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	8e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	8e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	9e-05
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	9e-05
PHA01732	94	PHA01732, PHA01732, proline-rich protein	9e-05
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	9e-05
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-04
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	1e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	1e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	1e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-04
TIGR02784	1135	TIGR02784, addA_alphas, double-strand break repair	1e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	2e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	2e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	2e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	2e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	2e-04
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	2e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	3e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	3e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	3e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	3e-04
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	3e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	3e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	3e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	3e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	3e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	3e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	3e-04
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	3e-04
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	3e-04
PHA03301	226	PHA03301, PHA03301, envelope glycoprotein L; Provi	3e-04
PRK09429	275	PRK09429, mepA, penicillin-insensitive murein endo	3e-04
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	4e-04
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	4e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	4e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	4e-04
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	4e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	4e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	4e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	4e-04
PRK09424	509	PRK09424, pntA, NAD(P) transhydrogenase subunit al	4e-04
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	4e-04
pfam01690	460	pfam01690, PLRV_ORF5, Potato leaf roll virus readt	4e-04
pfam01285	424	pfam01285, TEA, TEA/ATTS domain family	4e-04
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	5e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	5e-04
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	5e-04
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	5e-04
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	6e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	6e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	6e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	6e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	6e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	6e-04
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	6e-04
TIGR02557	201	TIGR02557, HpaP, type III secretion protein HpaP	6e-04
PRK10547	670	PRK10547, PRK10547, chemotaxis protein CheA; Provi	6e-04
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	6e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	6e-04
pfam01140	129	pfam01140, Gag_MA, Matrix protein (MA), p15	6e-04
pfam06482	291	pfam06482, Endostatin, Collagenase NC10 and Endost	6e-04
pfam12301	154	pfam12301, CD99L2, CD99 antigen like protein 2	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	7e-04
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	7e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	7e-04
PRK09429	275	PRK09429, mepA, penicillin-insensitive murein endo	7e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	7e-04
PRK13881	472	PRK13881, PRK13881, conjugal transfer protein TrbI	7e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	7e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	8e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	8e-04
pfam09483	185	pfam09483, HpaP, Type III secretion protein (HpaP)	8e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	8e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	8e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	8e-04
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	8e-04
PRK08119	382	PRK08119, PRK08119, flagellar motor switch protein	8e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	9e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	9e-04
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.001
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.001
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.001
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.001
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.001
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.001
PRK09424	509	PRK09424, pntA, NAD(P) transhydrogenase subunit al	0.001
pfam01690	460	pfam01690, PLRV_ORF5, Potato leaf roll virus readt	0.001
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.001
PRK04596	248	PRK04596, minC, septum formation inhibitor; Review	0.001
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	0.001
PRK03100	136	PRK03100, PRK03100, sec-independent translocase; P	0.001
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.001
PRK13855	376	PRK13855, PRK13855, type IV secretion system prote	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.002
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.002
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	0.002
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.002
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.002
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	0.002
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.002
PHA03301	226	PHA03301, PHA03301, envelope glycoprotein L; Provi	0.002
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	0.002
PRK10547	670	PRK10547, PRK10547, chemotaxis protein CheA; Provi	0.002
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.002
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.002
PRK03100	136	PRK03100, PRK03100, sec-independent translocase; P	0.002
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.002
pfam02711	95	pfam02711, Pap_E4, E4 protein	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	0.002
pfam04959	211	pfam04959, ARS2, Arsenite-resistance protein 2	0.002
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	0.002
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.003
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.003
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.003
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	0.003
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.003
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.003
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
pfam02711	95	pfam02711, Pap_E4, E4 protein	0.003
PRK00575	92	PRK00575, tatA, twin arginine translocase protein	0.003
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	0.003
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	0.003
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	0.003
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.003
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.003
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.003
pfam14283	213	pfam14283, DUF4366, Domain of unknown function (DU	0.003
PHA03294	835	PHA03294, PHA03294, envelope glycoprotein H; Provi	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.004
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.004
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	0.004
PRK13881	472	PRK13881, PRK13881, conjugal transfer protein TrbI	0.004
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	0.004
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	0.004
PRK04596	248	PRK04596, minC, septum formation inhibitor; Review	0.004
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.004
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	0.004
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	0.004
pfam04929	381	pfam04929, Herpes_DNAp_acc, Herpes DNA replication	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (317), Expect = 1e-30
 Identities = 91/281 (32%), Positives = 140/281 (49%), Gaps = 22/281 (7%)

Query: 136 FKKRITYDPQGIANTWMGP-DVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLS 194
           FK  I  DP    + W    DVC  ++G  C+         V  +D +G   +G   S +
Sbjct: 37  FKSSIN-DPLKYLSNWNSSADVCL-WQGITCN-----NSSRVVSIDLSGKNISG-KISSA 88

Query: 195 DFLEKLEDLAIFHANSNNFTKSIP----KMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250
            F  +L  +   + ++N  +  IP      +S L++L   ++SNN   G   +   +I N
Sbjct: 89  IF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL---NLSNNNFTG--SIPRGSIPN 141

Query: 251 LTFLDLRFNSFSGPVPAEI-FYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308
           L  LDL  N  SG +P +I  +  L VL L  N     +P ++ +  +L ++T A+N+  
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 309 GPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS 368
           G IP  +G+ K L  +    N  +G +PYEIG L++    D+  N LTGPIP S G L +
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 369 MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
           +QYL L  N+  GP+P  +  L KL++L LS N  +   PE
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 4/209 (1%)

Query: 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
            L  L  L      SN     IP+   ++K L  + +  N L G  P E+  + +L  LD
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENI-GSTGALYVTFANNEFTGPIPS 313
           L +N+ +GP+P+ +  L +L  LFL  NK S  +P +I      + +  ++N  +G IP 
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 314 SIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYL 372
            + + + L E+L L +N FTG +P  +  L    V  + +N+ +G IP + G  +++  L
Sbjct: 303 LVIQLQNL-EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 373 NLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
           +L+ N   G +PE +C    L  L L  N
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 73/224 (32%), Positives = 104/224 (46%), Gaps = 29/224 (12%)

Query: 190 DFSLS----DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEV 245
           D SLS    + + +L++L I H  SNNFT  IP   + L  L  L + +NK  G  P  +
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 246 VNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALY-VTFAN 304
               NLT LDL  N+ +G                        +PE + S+G L+ +   +
Sbjct: 353 GKHNNLTVLDLSTNNLTG-----------------------EIPEGLCSSGNLFKLILFS 389

Query: 305 NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG 364
           N   G IP S+G  + L  V   +N F+G LP E   L      D+ NN L G I     
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449

Query: 365 CLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408
            + S+Q L+LA N+F+G +P+      +L NL LS N F+   P
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP 492

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 1/195 (0%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
           SN+    IPK     + L  + + +N   G  P E   +  + FLD+  N+  G + +  
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 270 FYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLN 328
           + +  L +L L  NKF   LP++ GS     +  + N+F+G +P  +G    L+++    
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC 388
           N  +G +P E+         D+ +N+L+G IP SF  +  +  L+L+ NQ  G +P+ + 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 389 QLPKLVNLSLSYNYF 403
            +  LV +++S+N+ 
Sbjct: 569 NVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 2/230 (0%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L  L++L       N  +  IP     L+ L  LD+S+N L G  P  V+ ++NL  L L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 257 RFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGALYV-TFANNEFTGPIPSS 314
             N+F+G +P  +  L  L VL L +NKFS  +P+N+G    L V   + N  TG IP  
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL 374
           +  +  L +++  +N   G +P  +G   +     + +N  +G +P  F  L  + +L++
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMN 424
           + N   G +      +P L  LSL+ N F    P+     + + LD+  N
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 4e-19
 Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 2/201 (0%)

Query: 211 NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF 270
           N     IP   + L  L  L +++N+L G  P E+  +K+L ++ L +N+ SG +P EI 
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 271 YL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLN 328
            L  L+ L L  N  +  +P ++G+   L Y+    N+ +GPIP SI   + L+ +   +
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC 388
           N  +G +P  +  L N  +  + +N  TG IP +   L  +Q L L  N+F G +P+ + 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 389 QLPKLVNLSLSYNYFTQVGPE 409
           +   L  L LS N  T   PE
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 9e-18
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 1/176 (0%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
            N+F+  +P   +KL  +Y LD+SNN L G       ++ +L  L L  N F G +P   
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472

Query: 270 FYLDLDVLFLNNNKFSQNLPENIGSTGALY-VTFANNEFTGPIPSSIGRAKYLLEVLFLN 328
               L+ L L+ N+FS  +P  +GS   L  +  + N+ +G IP  +   K L+ +   +
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
           N  +G +P     +   +  D+  N+L+G IP + G + S+  +N++ N  +G +P
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 74.2 bits (182), Expect = 7e-14
 Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            PA +        PP +P    PP P+   PP P P PPPPP P PPPPPPPRP  P +P
Sbjct: 2889 PAVSRSTESFALPPDQP--ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Length = 3151

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 185 RFNG--PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFP 242
           +F G  PD   S  LE L DL+      N F+ ++P+    L  L +L +S NKL G  P
Sbjct: 463 KFFGGLPDSFGSKRLENL-DLS-----RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 243 MEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTF 302
            E+ + K L  LDL  N  SG +PA   + ++ VL       SQ             +  
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPAS--FSEMPVL-------SQ-------------LDL 554

Query: 303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357
           + N+ +G IP ++G  + L++V   +N   G LP    FL+ +     GN  L G
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 27/57 (47%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 67   PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP---PPPPRPPKPPSPFGP 120
            P      E    PP  PE    P  PPPP P P PPPPP   PPPP PP+P  P  P
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 71.5 bits (175), Expect = 6e-13
 Identities = 27/61 (44%), Positives = 29/61 (47%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             + + E    PP  PE    P  PP P   P PPPPP P PPPPPPP P P       P 
Sbjct: 2891 VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950

Query: 119  G 119
            G
Sbjct: 2951 G 2951

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.4 bits (172), Expect = 1e-12
 Identities = 28/61 (45%), Positives = 31/61 (50%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             +      PP  P   P    PPPP+P   PPPPP P PPPPPPP P PP  P   P+  
Sbjct: 2893 RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGA 2952

Query: 119  G 119
            G
Sbjct: 2953 G 2953

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 27/61 (44%), Positives = 29/61 (47%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                P   P  PP P+   PP P P+P  PP P PPPPPPP P PP  P   P     P 
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956

Query: 119  G 119
            G
Sbjct: 2957 G 2957

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 25/51 (49%), Positives = 25/51 (49%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PPPPPP      P P   P  PPP  PP P P  P   PPPPP  P  P P
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 26/57 (45%), Positives = 26/57 (45%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PAP   PP      P    PPPP P   PP P P  P   PPPPP  P  PP PP  
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVD 97

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 26/62 (41%), Positives = 26/62 (41%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P       P P   P  PPP  P    P  P   PPPPP  P  PPPPP  P  P P 
Sbjct: 45  PPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPP 104

Query: 119 GP 120
            P
Sbjct: 105 AP 106

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 28/59 (47%), Positives = 29/59 (49%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            A A      PPPPP P  PP P P+     PPPPP  P  PPPPP  P   PP  P P
Sbjct: 50  TAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 29/62 (46%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            P   PE  P P  PP P   P PPP P   P PPPPPPP P PP  P   P     PS  
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQ--PQPPPPPPPRPQPPLAPTTDPAGAGEPSGA 2958

Query: 119  GP 120
             P
Sbjct: 2959 VP 2960

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 25/54 (46%), Positives = 26/54 (48%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P PPPPP       P P    PPPPP  PP P P  P   PPP P  P +P  P
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPP 94

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 24/62 (38%), Positives = 25/62 (40%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            PA  P     PP             E    PP  P  PP P  PPPP P P+PP PP P 
Sbjct: 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Query: 119  GP 120
             P
Sbjct: 2931 PP 2932

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 15/63 (23%), Positives = 16/63 (25%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             A AP   P    P  P   PP    P  PP P         P  PP          + 
Sbjct: 53  AAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

Query: 118 FGP 120
              
Sbjct: 113 VED 115

Length = 1228

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 24/58 (41%), Positives = 26/58 (44%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
            PAP     PP    P P  P PPP      PP P    P P   PPP  PP+PP+ P
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141

Length = 141

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 61.6 bits (149), Expect = 5e-10
 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 51  IIGGGGYGPAPAPEYCPPPP--PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
           IIG     PA   E   P P     EP  P P    P   P PP P P P     P    
Sbjct: 199 IIGDANAAPAEPAEEEAPAPSEAGSEP-APDPAARAPHAAPDPPAPAPAPAKTAAPAAAA 257

Query: 109 PRPPKPPSPF 118
           P       P+
Sbjct: 258 PVSSGDSGPY 267

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 27/69 (39%), Positives = 31/69 (44%)

Query: 58   GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             P   P+   PPPP P+P  PPPP P+P  PPPP P PP  P   P     P    P   
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963

Query: 118  FGPFASERI 126
             G     R+
Sbjct: 2964 LGALVPGRV 2972

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            A A    PP  P  E   PPP PP P+ PP P  P   P       P   +P   P   
Sbjct: 390 KAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPA- 448

Query: 119 GPFASERIQLA 129
            P   E   L 
Sbjct: 449 -PPKEEEKALI 458

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 21/58 (36%), Positives = 25/58 (43%)

Query: 60   APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            +PA +   P  PP   +  P           PP  P  PP P  PPPP P+P  PP P
Sbjct: 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 54   GGGYGPA-PAPEYCPPPPPPPEPICPP---------PPPPEPICPPPPPPPPPPPPPPPP 103
            GG   P        P   P  +P  P          P           PP  P  PP P 
Sbjct: 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912

Query: 104  PPPPPPRPPKPPSPFGPFASERIQ 127
             PPPP   P+PP P  P       
Sbjct: 2913 APPPPQPQPQPPPPPQPQPPPPPP 2936

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 59  PAPAPEYCPPPPPPPEPICP------PPPPPEPICPPPPPP---PPPPPPPPPPPPPPPP 109
           P PAP+   P    P P+ P       P        PP  P      PPP PP P  PP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 110 RPPKPPSPFGPFASERIQLA 129
                 +P    A+  +   
Sbjct: 422 PHTPESAPKLTRAAIPVDEK 441

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 25/83 (30%)

Query: 43  TRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPP 102
            R + LE  +G  G   APA          P     P          P P   P P P P
Sbjct: 376 ARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAP 435

Query: 103 PPPPPPPRPPKPPSPFGPFASER 125
            P P PP P       G  +   
Sbjct: 436 APAPAPPSPAGNAPAGGAPSPPP 458

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 16/65 (24%), Positives = 17/65 (26%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
            YGP                   P   P    P  P P PP    P  PP P        
Sbjct: 35  DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94

Query: 116 SPFGP 120
           +P  P
Sbjct: 95  APAAP 99

Length = 1228

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 26/78 (33%), Positives = 33/78 (42%)

Query: 40  VAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPP 99
           +AE  ++   +    G Y P  A  +  P P   +   PPP  P P   P PP   P PP
Sbjct: 30  LAERAQRAQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPP 89

Query: 100 PPPPPPPPPPRPPKPPSP 117
           PP       P+ P PP P
Sbjct: 90  PPNSGYMADPQEPPPPYP 107

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 59.6 bits (144), Expect = 3e-09
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           GG     PA       P P     P   PP P  P P   P     P PPP   PP P  
Sbjct: 400 GGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPAT 459

Query: 114 PPSPFGPFASERIQLAFKVIQRFKKRITYDPQG 146
            P+P  P  + R     K +   ++R   +P G
Sbjct: 460 EPAPDDPDDATR-----KALDALRERRPPEPPG 487

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.5 bits (145), Expect = 3e-09
 Identities = 14/72 (19%), Positives = 16/72 (22%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                  A A       P        P  P         P  PP P         P  PP
Sbjct: 41  TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

Query: 113 KPPSPFGPFASE 124
              +   P A+ 
Sbjct: 101 AAAAAAAPAAAA 112

Length = 1228

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 24/78 (30%), Positives = 25/78 (32%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           G    PA A    PP   P  P  P PP           PP P       PPP P  P  
Sbjct: 174 GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTN 233

Query: 114 PPSPFGPFASERIQLAFK 131
           P  P GP A     +   
Sbjct: 234 PSPPPGPAAPPPPPVQQV 251

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 217 IPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD 275
           IP   SKL+ L  +++S N + G  P  + +I +L  LDL +NSF+G +P  +  L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 276 VLFLNNNKFSQNLPENIG 293
           +L LN N  S  +P  +G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 23/66 (34%), Positives = 25/66 (37%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            PA      PP P  P+P  P PPP  P   P P       P   P PPP   PP   + 
Sbjct: 99  SPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAS 158

Query: 118 FGPFAS 123
               AS
Sbjct: 159 PAAVAS 164

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP----PK 113
            P+  P+       PP+        P P+ P P  PP P  P   P       P    PK
Sbjct: 384 APSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPK 443

Query: 114 PPSPFGPFASERIQLA 129
              P  P   E+  +A
Sbjct: 444 YTPPAPPKEEEKALIA 459

Length = 585

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPP--PPPPPPPPPPPPPPPRPPKPPSP 117
           P PPPP P+    PPP    PP  PP   P P  P   PPP P  PP   +P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAP 193

Length = 274

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.4 bits (142), Expect = 7e-09
 Identities = 15/67 (22%), Positives = 16/67 (23%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             A A     P   P       P P  P    P  PP P         P  P      + 
Sbjct: 48  AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAA 107

Query: 118 FGPFASE 124
               A E
Sbjct: 108 PAAAAVE 114

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.1 bits (141), Expect = 7e-09
 Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                  APA     P P    P     P P     P P P P P PP P    P    P
Sbjct: 398 APSAAAAAPAAA---PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

Query: 113 KPPSPFGPFASER 125
            PP    P A   
Sbjct: 455 SPPPAAAPSAQPA 467

Length = 824

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 23  TLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPP 82
           +  L ++L +     +         L + +       AP  E   P P P  P   P PP
Sbjct: 14  SGALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEE---PQPEPEPPEEQPKPP 70

Query: 83  PEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            EP  PP P PP P   P P   P  P+P   P P
Sbjct: 71  TEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105

Length = 244

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 21/61 (34%), Positives = 24/61 (39%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           PA       P  P P P+ PP P P     P P P      PP P P P P   +  +P 
Sbjct: 87  PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Query: 119 G 119
           G
Sbjct: 147 G 147

Length = 226

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 16/80 (20%), Positives = 18/80 (22%), Gaps = 3/80 (3%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPP---PPPPPPPPPPPPPPPPP 109
                 PA       P    P           P     P      P  PP   PP P   
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA 428

Query: 110 RPPKPPSPFGPFASERIQLA 129
                P+     A   + LA
Sbjct: 429 PAAAAPAAAPAAAPAAVALA 448

Length = 618

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 27/60 (45%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P P    PP P P+     PPPP P  P  PPPPP  P  PPPP P P R       F
Sbjct: 60  PPPPPPPAAPPAPQPDDPNAAPPPP-PADPNAPPPPPVDPNAPPPPAPEPGRIDNAVGGF 118

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           PAPAP   P P PP      P        P   P   P P P   P P     P PP+  
Sbjct: 431 PAPAPA--PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488

Query: 119 GPFASER 125
            P A+  
Sbjct: 489 APAAAPA 495

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 20/60 (33%), Positives = 21/60 (35%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            PA        P PPP       P P P   P P   P P PP  P P   P  P  P+ 
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502

Length = 824

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 27/88 (30%), Positives = 42/88 (47%)

Query: 304 NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF 363
           N    G IP+ I + ++L  +    N   G +P  +G +++  V D+  N   G IP S 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLP 391
           G L+S++ LNL  N   G VP  +    
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 19/80 (23%), Positives = 20/80 (25%), Gaps = 8/80 (10%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPE----PICPPP----PPPPPPPPPPPPPP 104
                  APA +  P  P    P   P         P   P      P  PP   PP P 
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426

Query: 105 PPPPPRPPKPPSPFGPFASE 124
             P    P       P A  
Sbjct: 427 AAPAAAAPAAAPAAAPAAVA 446

Length = 618

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 29/57 (50%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 60  APAPEYCPPP-PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP-PKP 114
           APA    P    PPPEP+  P P PEPI P PP   P   P P P P P P+P PKP
Sbjct: 54  APADLEPPQAVQPPPEPVVEPEPEPEPI-PEPPKEAPVVIPKPEPKPKPKPKPKPKP 109

Length = 246

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPP-PPPPPPPPPPPPPPRPPKPPSP 117
           P PAP    P       I P  P  E   PPP PP P  PP P  P   P       P  
Sbjct: 381 PTPAPS-TRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVD 439

Query: 118 FGPFA 122
             P  
Sbjct: 440 EKPKY 444

Length = 585

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 3/80 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           PA AP         P P    P         PP   PP P   P    P   P   P+  
Sbjct: 389 PAAAPV--AQAAAAPAPA-AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

Query: 119 GPFASERIQLAFKVIQRFKK 138
               +   Q A + +    +
Sbjct: 446 ALAPAPPAQAAPETVAIPVR 465

Length = 618

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 21/70 (30%), Positives = 24/70 (34%)

Query: 48  LEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
           LE +  G    P+ A     P  P   P    PP P      P    P P P PP    P
Sbjct: 374 LEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433

Query: 108 PPRPPKPPSP 117
           P R   P + 
Sbjct: 434 PARSADPAAA 443

Length = 576

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP--PR 110
            GG   PAPAP   P     P     P P        P    P   P P    PPP    
Sbjct: 444 PGGAPAPAPAPAAAPAAAARP-AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEEL 502

Query: 111 PPKPPSPFGPFASE 124
           PP+  SP  P   +
Sbjct: 503 PPEFASP-APAQPD 515

Length = 700

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 18/68 (26%), Positives = 22/68 (32%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           +G   A +  P PP P     PPPP            P    P    P    PR  + P 
Sbjct: 9   FGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPK 68

Query: 117 PFGPFASE 124
           P   +  E
Sbjct: 69  PASLWKLE 76

Length = 475

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 63   PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFA 122
            P+  P    P  P+     P  P   PP P PP    P PPPP P P   +P     P  
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGP--APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

Query: 123  SERIQ 127
                +
Sbjct: 2647 PPPER 2651

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 20/85 (23%)

Query: 59   PAPAPEY-CPPPPPPPEPICP--------PPPPPEPICP-----------PPPPPPPPPP 98
            P  AP+   PPP P P P  P        P  PP+   P            P PP P PP
Sbjct: 2560 PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP 2619

Query: 99   PPPPPPPPPPPRPPKPPSPFGPFAS 123
                P PPPP   P    P      
Sbjct: 2620 DTHAPDPPPPSPSPAANEPDPHPPP 2644

Length = 3151

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 30/77 (38%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP----------PPP 108
             P PE    P P PEPI P PP   P+  P P P P P P P P P             
Sbjct: 64  VQPPPEPVVEPEPEPEPI-PEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122

Query: 109 PRPPKPPSPFGPFASER 125
           P  P+P SPF   A  R
Sbjct: 123 PVEPRPASPFENTAPAR 139

Length = 246

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           P P   P  P P +P    P P +P+ P PP  P PP PP PP PP  P  P PP
Sbjct: 93  PQPAQQPFQPQPLQP----PQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPP 143

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 12/56 (21%), Positives = 16/56 (28%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           + P P  +     P     +  P   P+      P  P   P P  P   PP    
Sbjct: 199 HAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           AP+P    P P PPEP  PP P   P   PPPPP P P   P   PPP P   +    
Sbjct: 730 APSPAADDPVPLPPEPDDPPDPAGAPA-QPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 21/58 (36%), Positives = 22/58 (37%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            P P    PPPP P P  PPP P   +     P   P PPP   PP     P    S 
Sbjct: 108 PPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD 165

Length = 1352

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPP-PPPPPPPPPRPPKPPSP 117
           P P P    P PP      P P PP+P   P P   P  P P P P P P P+    P P
Sbjct: 58  PEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117

Length = 244

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 59  PAPAPEYCPPP----PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
             P      PP    PPP   +   PPP EP  PPP P PP P P  PP P  PP P + 
Sbjct: 39  DPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARK 98

Query: 115 PS 116
           P 
Sbjct: 99  PP 100

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 15/55 (27%), Positives = 15/55 (27%)

Query: 62  APEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           A     P    P P               P      P PPP PP  PP PP    
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 20/59 (33%), Positives = 20/59 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            APA     P P PP     P  P        P PPP    PP P P  P  P   P  
Sbjct: 372 SAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPA 430

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             A AP     P P   P   P P P P  P PP P    P    P PPP   P   P+P
Sbjct: 412 PAAAAPAAAAAPAPAAAP--QPAPAPAPA-PAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 118 FGPFASERIQ 127
               A E   
Sbjct: 469 APAAAPEPTA 478

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 24/67 (35%), Positives = 26/67 (38%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
             P+   +   PP P       PPP PE    P PPP P  PPPPP    PP    KP  
Sbjct: 202 EDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTP 261

Query: 117 PFGPFAS 123
           P      
Sbjct: 262 PSASATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           G AP+P     P   P P   P   PEP   P P PP  P P   P  P  P  P     
Sbjct: 451 GGAPSPPPAAAPSAQPAP--APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508

Query: 118 F 118
            
Sbjct: 509 A 509

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 57  YGPAPAPEYCPPPPP-PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
             P+  P   P  P  P  P  P  P    + P P       PPP P  P  P  PP P 
Sbjct: 182 ASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPA 241

Query: 116 SPFGPFASERIQLAFKV 132
           +P  P   +   L+   
Sbjct: 242 APPPPPVQQVPPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 18/83 (21%), Positives = 19/83 (22%), Gaps = 20/83 (24%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPI-----CPPPPP---------------PPPPPP 98
           PA  P   PP P        P   P          P PP               P P   
Sbjct: 414 PAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473

Query: 99  PPPPPPPPPPPRPPKPPSPFGPF 121
              P P   P      P+  G  
Sbjct: 474 SAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 16/65 (24%), Positives = 16/65 (24%), Gaps = 2/65 (3%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G  G G  PA     P   P      P        P  PP  P   P            P
Sbjct: 366 GQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPA--PAAPPAAPAAAPAAAAAARAVAAAP 423

Query: 113 KPPSP 117
              SP
Sbjct: 424 ARRSP 428

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 15/78 (19%)

Query: 60   APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP-------PPPPPPPPPPPPPPPP--- 109
                    PPPPPP P  P P       P PP P       P  P  P PP  P  P   
Sbjct: 2693 GSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

Query: 110  ----RPPKPPSPFGPFAS 123
                RP +PP+  GP A 
Sbjct: 2752 GGPARPARPPTTAGPPAP 2769

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 24/48 (50%), Positives = 25/48 (52%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP 105
            P P P   P P P      PPPPP +P  PPPPP  P  PPPP P P
Sbjct: 61  PPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 27/84 (32%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 39  VVAETRRQELEII----------IGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICP 88
           V AE   Q+LE            I G            PPP        PPPPPP     
Sbjct: 24  VEAERSLQQLETTLSLLEAKLASIPGLEDVTVQTTP--PPPASAITNGGPPPPPPARAEA 81

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPP 112
             PPPP  P  PP  P P  P   
Sbjct: 82  ASPPPPEAPAEPPAEPEPEAPAEN 105

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 24/83 (28%)

Query: 58   GPAPAPEYCPPPPPPPEPICPPPPPPEPICP-----------------------PPPPPP 94
             P P      PP  P   + PP P P P  P                           P 
Sbjct: 2550 DPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPR 2609

Query: 95   PPPPPPPPPPPPPPPRPPKPPSP 117
             P PP P PP    P PP PPSP
Sbjct: 2610 GPAPPSPLPPDTHAPDPP-PPSP 2631

Length = 3151

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P PAP     PPPP   + P  PP       P P  P   PPP P  PPP + PK   P
Sbjct: 145 PPPAPVVMMQPPPPH-AMPPASPPAAQ----PAPSAPASSPPPTPASPPPAKAPKSSHP 198

Length = 274

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.6 bits (132), Expect = 9e-08
 Identities = 21/63 (33%), Positives = 24/63 (38%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
             G   P+PA +   P PP P+    P   P    PPP P P   P   PPP PP     
Sbjct: 725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784

Query: 113 KPP 115
              
Sbjct: 785 MAE 787

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 9e-08
 Identities = 25/64 (39%), Positives = 26/64 (40%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            G    APA E    P      + P  P  E    PP P  P PPPP PPP  PPP P  
Sbjct: 73  PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAP 132

Query: 114 PPSP 117
             S 
Sbjct: 133 DLSE 136

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 21/63 (33%), Positives = 22/63 (34%)

Query: 60   APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
               P   P     P    PP   P    PPP    P  PPPPP PPPP        +P G
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860

Query: 120  PFA 122
               
Sbjct: 2861 DVR 2863

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 23/67 (34%), Positives = 25/67 (37%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             APAP   P P P P P   PP P         P PPP   P   P P P   P+P + 
Sbjct: 420 AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479

Query: 118 FGPFASE 124
             P    
Sbjct: 480 PAPAPPA 486

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 19/66 (28%), Positives = 20/66 (30%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            PAP       P        P   P     P P   P P   P P PP  P     P +P
Sbjct: 438 APAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497

Query: 118 FGPFAS 123
             P A 
Sbjct: 498 AAPAAP 503

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 16/73 (21%), Positives = 17/73 (23%), Gaps = 12/73 (16%)

Query: 58  GPAPAPEYCPPPPPP--------PEPICPPPPPPEPICPP----PPPPPPPPPPPPPPPP 105
            P  AP    P   P          P  P    PE +  P    P P      P P   P
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483

Query: 106 PPPPRPPKPPSPF 118
                 P      
Sbjct: 484 AAARLTPTEEGDV 496

Length = 618

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 24/50 (48%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 69  PPPPPEPICPPPP-PPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P P  +P  P P  PP+P  P  P PP  P PP PP PP PP  P  P P
Sbjct: 93  PQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLP 142

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           AP P   P    P +   P    P       P   P  P   P P  P  +PP+  
Sbjct: 200 APKPTQQPTVQNPAQQ--PTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 31/123 (25%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 18  FLCAFTLILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPA----PAPEYCPPPPPPP 73
              AF +I  + L         + E R    E     G    A     APE     P P 
Sbjct: 10  AAAAFEVITSAQLSRIGRIERELRELRSLVAEG--AAGPVAKAAEQMAAPEAAEAAPLPA 67

Query: 74  E------PICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
                  P  PPP PP P      P    P   P P   P P  P  PS      +  I+
Sbjct: 68  AAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAIE 127

Query: 128 LAF 130
              
Sbjct: 128 WLL 130

Length = 931

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 20/53 (37%), Positives = 20/53 (37%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
             P PE      P PE      P PE      P P P P P P P P P P P
Sbjct: 68  EEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEP 120

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 23/60 (38%)

Query: 56   GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
                +PA    P PP  P     P  P  P  PP    PP P PP  P   PP R  +P 
Sbjct: 2728 ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA 2787

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 14/55 (25%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           PA      P P PP       PP P         P  PP       P       +
Sbjct: 62  PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP-PPRPPKPPSPF 118
                  P PPP   P   P P P     P   P P PP  P P   P  P  P  P+  
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Query: 119 GPFASER 125
              A+ R
Sbjct: 507 DDAATLR 513

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 21/62 (33%), Positives = 21/62 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            AP P   P P P P       P      PPP   P   P P P   P P   P P  P 
Sbjct: 427 AAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA 486

Query: 119 GP 120
            P
Sbjct: 487 AP 488

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 20/93 (21%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
              P+     P  P P      P        P       PPP P  P  P P P     P
Sbjct: 185 SDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPP 244

Query: 118 FGPFASERIQLAFKVIQRFKKRITYDPQGIANT 150
             P          K              GI   
Sbjct: 245 PPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 17/75 (22%), Positives = 19/75 (25%)

Query: 46  QELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP 105
           +E E             P     P        P   P  P  P PP  P  P     PP 
Sbjct: 156 EEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA 215

Query: 106 PPPPRPPKPPSPFGP 120
           P   +   PP     
Sbjct: 216 PSSFQSDTPPPSPES 230

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 14/56 (25%), Positives = 16/56 (28%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           P   P    P   P        P  +P   P  P   P P  P   PP   +  K 
Sbjct: 203 PTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 24/65 (36%), Positives = 26/65 (40%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P P+  PPPP P  P+  P     P  PPPPPP         P   P    P PP P 
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE 582

Query: 119 GPFAS 123
            P  S
Sbjct: 583 EPTPS 587

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 20/59 (33%), Positives = 22/59 (37%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
            P P+P   P  P  P+       P  P     PP P P  P  P P PP      PPS
Sbjct: 380 APNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICP-PPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             P P   P PPP P     P        P PPP    PP P P  P  P P PP   + 
Sbjct: 375 ANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAAN 434

Length = 620

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 18/60 (30%), Positives = 18/60 (30%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            P    E  P      EP        EP         P P P P P P P P P   P P
Sbjct: 63  EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 69  PPPPPEPICPP---PPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFA 122
           PP PPEP+ PP    P P    PPP   P  PP P    P P   PP    P  P A
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140

Length = 141

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 23/67 (34%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           GP P P    P                P  P     P PP P  P PPPP P P  PP  
Sbjct: 70  GPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPS 129

Query: 118 FGPFASE 124
             P  SE
Sbjct: 130 PAPDLSE 136

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 3/90 (3%)

Query: 34  VAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP 93
           V AG    +          G G   PA      P           P     P  P P  P
Sbjct: 55  VVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP 114

Query: 94  PPPPPPPPP---PPPPPPPRPPKPPSPFGP 120
            PPPP PPP   PP P P           P
Sbjct: 115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSP 144

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 1/73 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            GGG GPA A    P   P P    P    P P  PP  P   P            P   
Sbjct: 368 SGGGAGPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR 426

Query: 113 KPPSPFGPFASER 125
            P       A + 
Sbjct: 427 SPAPEALAAARQA 439

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 21/59 (35%), Positives = 22/59 (37%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P PAP    P P    P   PPPPP          P   P    PPPP P  P   P+ 
Sbjct: 532 PPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 20/71 (28%), Positives = 20/71 (28%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
               P   P    PP    PPPP         P   P    PPPP P  P   P   S  
Sbjct: 535 APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594

Query: 119 GPFASERIQLA 129
                    LA
Sbjct: 595 EEIDKAAKNLA 605

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 20/82 (24%), Positives = 21/82 (25%), Gaps = 2/82 (2%)

Query: 34  VAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP 93
           VAA         + L         GP  AP   P P P   P     P      P     
Sbjct: 419 VAAAPARRSPAPEALAAARQASARGPGGAPA--PAPAPAAAPAAAARPAAAGPRPVAAAA 476

Query: 94  PPPPPPPPPPPPPPPPRPPKPP 115
              P    P   P P     PP
Sbjct: 477 AAAPARAAPAAAPAPADDDPPP 498

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 16/67 (23%), Positives = 17/67 (25%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                     P P P P  PP P              P PPP    PP P          
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426

Query: 119 GPFASER 125
            P A+  
Sbjct: 427 TPPANAA 433

Length = 620

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 29/99 (29%), Positives = 32/99 (32%), Gaps = 22/99 (22%)

Query: 44  RRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPIC----------------------PPPP 81
           R   +E+ IGG G     A +  PP   P  P                        P  P
Sbjct: 167 REMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLP 226

Query: 82  PPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
            P P  P  PP   P PP PP      P P  PP P  P
Sbjct: 227 GPSPAQPSAPPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 21/61 (34%), Positives = 22/61 (36%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             +      P  P  P      P    P    P  P PPP    P  PPPPP PP P  P 
Sbjct: 2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852

Query: 119  G 119
            G
Sbjct: 2853 G 2853

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP-PRP 111
                 PA A    P   P P P   P P P       P    P PPP   P   P P P
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

Query: 112 PKPPSPFGPFASE 124
              P P    A  
Sbjct: 471 AAAPEPTAAPAPA 483

Length = 824

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 19/60 (31%), Positives = 19/60 (31%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           G  P  E      P PE      P PE      P P       P P P P P P   P P
Sbjct: 57  GTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEP 116

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           P PP PP   PPPPPPPP     PP+  
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDE 286

Length = 584

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 62  APEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            P     P P P+P  PPPPPP    P PP P   P  P    P       + P   
Sbjct: 260 LPRATRLPEPEPQP--PPPPPP----PEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 22/62 (35%), Positives = 25/62 (40%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  A     P P   +P+  PP P +P  P   P  PPPPP P P   P   PP  P   
Sbjct: 722 PQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Query: 119 GP 120
             
Sbjct: 782 EE 783

Length = 824

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 23/51 (45%), Positives = 24/51 (47%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P  PP P+    P PP  PI P PP PP PP  P  P PP  P  P    P
Sbjct: 104 PLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPLLPDLPLEAWP 154

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 16/54 (29%), Positives = 18/54 (33%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           PP   P            P  P    P P PP    P PP   +PP+P     P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177

Length = 418

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 20/66 (30%), Positives = 23/66 (34%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  + +   P   PPE   PP   P P  P P P   P   P P  P   P  P+     
Sbjct: 95  PYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAP 154

Query: 119 GPFASE 124
            P  S 
Sbjct: 155 QPVHSA 160

Length = 333

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 21/59 (35%), Positives = 24/59 (40%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P  A +    P P  +   P PP P+    P   P  PPPPP P P   P   P P  P
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 19/65 (29%), Positives = 21/65 (32%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G     PA       PP P   P     P   P  P P P   P   PPP PP       
Sbjct: 727 GASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786

Query: 113 KPPSP 117
           +  +P
Sbjct: 787 EDDAP 791

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 14/72 (19%), Positives = 15/72 (20%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
                 A   E   P  P        P       P P   P      P  PP   P  P 
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426

Query: 114 PPSPFGPFASER 125
                   A+  
Sbjct: 427 AAPAAAAPAAAP 438

Length = 618

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 15/65 (23%), Positives = 19/65 (29%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P   +     P       PP     + PPP  P    P P        P  P  P P G 
Sbjct: 685 PTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGA 744

Query: 121 FASER 125
             ++ 
Sbjct: 745 EQADG 749

Length = 753

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 20/95 (21%), Positives = 25/95 (26%), Gaps = 6/95 (6%)

Query: 38  DVVAETRRQEL------EIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPP 91
           +V+     +EL      E ++G             P    PPE    P  P  P  P  P
Sbjct: 568 EVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP 627

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
            P      P      P P    P       A    
Sbjct: 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA 662

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPP-----PPPPPPPPPPPPPPPP 107
           G     PAPAP   PP     +P   PP   +    P P      P PP P  PP P   
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754

Query: 108 PPRPPKPPSPFGPFASER 125
           P +PP PP+P    A   
Sbjct: 755 PAQPPPPPAPAPAAAPAA 772

Length = 824

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P     PP P PP+P    P P +   P  P P P P P P P   P P+P KPPS  
Sbjct: 68  KPPTEPETPPEPTPPKPK-EKPKPEKK--PKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124

Query: 119 GP 120
             
Sbjct: 125 AA 126

Length = 244

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 9e-07
 Identities = 19/71 (26%), Positives = 19/71 (26%)

Query: 41  AETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPP 100
           A            GG   P PA      P P P     P   P P  P  P P   P  P
Sbjct: 438 APAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497

Query: 101 PPPPPPPPPRP 111
             P  P     
Sbjct: 498 AAPAAPAGADD 508

Length = 824

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 18/26 (69%), Positives = 18/26 (69%)

Query: 85  PICPPPPPPPPPPPPPPPPPPPPPPR 110
           P  PPPPPPPP   PP  PPPPPPP 
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31

Length = 2365

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR-PPKPPSP 117
            P PA      P  P  P  PP  P  P  P  P  P  PP    PP P PP  P   P  
Sbjct: 2723 PGPAAARQASPALPAAPA-PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781

Query: 118  FGP 120
               
Sbjct: 2782 RLT 2784

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 21/55 (38%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPF 121
            P PP P        PP+     PP   P P P P P     P PP  P P G F
Sbjct: 873 RPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGF 927

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
            P     P  P P  P+P  PPP PPP  PPP P P      RP   P P    +  
Sbjct: 99  SPAREGSPTPPGPSSPDP--PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 20/73 (27%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G       PA    P               P          P  PP  PPP  PP    P
Sbjct: 145 GPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP 204

Query: 113 KPPSPFGPFASER 125
           +PP    P ++  
Sbjct: 205 RPPRRSSPISASA 217

Length = 1352

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/53 (43%), Positives = 23/53 (43%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           P P       PPP      PP P P    P  PP P  PP P   PP PPPRP
Sbjct: 54  PPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRP 106

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P   P   P   P P  +  PPP       PPP  P  PPP P PP P P  PP P +P 
Sbjct: 37  PDDPP---PVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPP 93

Query: 119 GP 120
            P
Sbjct: 94  AP 95

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 16/58 (27%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
               P     P  P        P P P    PP P P  P  P P PP       P  
Sbjct: 382 NPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPP----PPPPRPP 112
           P PP P    PPPPPPPP     PP           R  
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRAL 297

Length = 584

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 17/59 (28%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
              AP+   P  PP      PPPP  P    P P        P  PP P P   +    
Sbjct: 691 ALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADG 749

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 16/59 (27%), Gaps = 8/59 (13%)

Query: 67  PPPPPPPEP--------ICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
              P  P P          PPPP       P P        P  PP P PP   +    
Sbjct: 692 LRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGA 750

Length = 753

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 28/56 (50%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 59  PAPAPEYCPP---PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           PAPAP  CPP   P  PP  +CP P  P P CPP     PP PP P P P P  +P
Sbjct: 110 PAPAPA-CPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKP 164

Length = 280

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P P PE  PP    P         P     PP  P  PPPP   P   P    P+  S 
Sbjct: 364 PLPEPE-VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Length = 647

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
                 P       P  +       PP P  PP        PP P P P   P   + P 
Sbjct: 5   QNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSP-QQQQPP 63

Query: 117 PFGPFAS 123
            F  F S
Sbjct: 64  QFSSFLS 70

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 60  APAPEYCP-PPPPPPEPICPP---PPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
            PA  + P  P P P     P   P P     PP    P P      P     P     P
Sbjct: 198 GPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTP 257

Query: 116 SPFGPFASE 124
           +P  P   E
Sbjct: 258 APPTPGGGE 266

Length = 401

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 32/88 (36%), Gaps = 24/88 (27%)

Query: 54   GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPP-------------------PP 94
            G    P       P  PP P  + P   P EP+  P  P                   PP
Sbjct: 2493 GAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPP 2552

Query: 95   PPPPPPPPPPPP----PPPRP-PKPPSP 117
            PP PP  PP  P    PPPRP P+P  P
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEP 2580

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 28/82 (34%), Gaps = 17/82 (20%)

Query: 59   PAPAPEYCPPPPPPPEPICP-----------------PPPPPEPICPPPPPPPPPPPPPP 101
            PAPAP   P   PP     P                 P  PP  +  P    PP   P  
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Query: 102  PPPPPPPPRPPKPPSPFGPFAS 123
            P PPP   +P  PP P GP   
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPP 2848

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 54   GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
                G    P   PP P PP+   P PPPP P   P    P P PPP  PPP  P   P 
Sbjct: 2602 VDDRGDPRGPA--PPSPLPPDTHAPDPPPPSP--SPAANEPDPHPPPTVPPPERPRDDPA 2657

Query: 114  PP 115
            P 
Sbjct: 2658 PG 2659

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 27/107 (25%), Positives = 33/107 (30%), Gaps = 36/107 (33%)

Query: 59   PAPAPEYCPPPPPPPEPICP-----PPPPPEPIC------------PPPPPPPPPP---- 97
            PA +P    PPP   +P  P     PPPP  P+             PP   P   P    
Sbjct: 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA 2879

Query: 98   ---------PPPPPP------PPPPPPRPPKPPSPFGPFASERIQLA 129
                     P           PP  P RPP+P +P  P    +    
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 17/64 (26%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                   P P+  P P   P    PPPP P P   P   PPP PP              
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQP-PPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793

Query: 113 KPPS 116
               
Sbjct: 794 DDED 797

Length = 824

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 319 KYLLEVLFLNN-FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN 377
           K+ ++ L L+N    G +P +I  L +    ++  N + G IP S G ++S++ L+L+ N
Sbjct: 417 KWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476

Query: 378 QFYGPVPEIVCQLPKLVNLSLSYNYFT 404
            F G +PE + QL  L  L+L+ N  +
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 14/68 (20%), Positives = 14/68 (20%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                 P P P   PP P P       P       P   PP     P          R  
Sbjct: 113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA 172

Query: 113 KPPSPFGP 120
             P     
Sbjct: 173 ALPLSSPE 180

Length = 1352

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 78  PPPPPPEPIC---PPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P PPPP P+    PPPP   PP  PP   P P  P    PP+P  P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASP 187

Length = 274

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 21/62 (33%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
           P PP      P P  P    P   PP PP  P  P    P P P  P +   P  S    
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 128 LA 129
            A
Sbjct: 442 AA 443

Length = 576

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 23/108 (21%), Gaps = 10/108 (9%)

Query: 33  EVAAGDVVAETRRQELEIIIGGGGYGPAPAPE----YCPPPPPPPEPICPPPPPPEPICP 88
             AA    A   R             PAP             P   P   P P   P   
Sbjct: 405 APAAAPAAAAAARAVAA---APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA 461

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPPKP---PSPFGPFASERIQLAFKVI 133
             P    P P        P    P     P+   P   E +   F   
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Length = 700

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 15/53 (28%)

Query: 65  YCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           + P P   P    P   P        P   P   P  P   P P  P + P  
Sbjct: 199 HAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            +  P+  PP   P  P+   PPP   +     PPP  P  PPP P PP P P  PPSP 
Sbjct: 33  ESAHPDDPPPVGDPRPPVVDTPPPVSAV--WVLPPPSEPAAPPPDPEPPVPGPAGPPSPL 90

Query: 119 GP 120
            P
Sbjct: 91  AP 92

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 20/64 (31%)

Query: 49  EIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
                     P+P P    P  P  +     P PP     PP P P  P  P P PP   
Sbjct: 373 APANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANA 432

Query: 109 PRPP 112
              P
Sbjct: 433 ANAP 436

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 20/59 (33%), Positives = 20/59 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P P     P P P      P PPPP P         P   P    PPPP P  P P   
Sbjct: 531 PPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 28/85 (32%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 44  RRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPP----- 98
           R  +L +    G           P   PPP    PP P P    PPP PPPPPP      
Sbjct: 504 RSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQAS 563

Query: 99  ------PPPPPPPPPPPRPPKPPSP 117
                  P    PPPP      PSP
Sbjct: 564 SNAPAQIPADSSPPPPIPEEPTPSP 588

Length = 620

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 50  IIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
             I  GG  PA AP          E   P  P      P PP    P PP    PP P P
Sbjct: 116 SEIDTGGAPPAAAPA--AAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAP 173

Query: 110 RPPKPPSP 117
               PP+P
Sbjct: 174 AAKPPPTP 181

Length = 418

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 55  GGYGPAPAPEYCPPPPPPP-EPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
               P   P Y P P  P  +P+ P   P        P P      P  P   P P P  
Sbjct: 124 PAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVA 183

Query: 114 PPSP 117
            P+P
Sbjct: 184 EPAP 187

Length = 333

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 28/64 (43%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPP-----PEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           PAPA   C P  P P   CP P P       P CPPP   P P  P P  PP     PP 
Sbjct: 91  PAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPA 150

Query: 114 PPSP 117
           PP P
Sbjct: 151 PPLP 154

Length = 280

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 22/63 (34%), Positives = 23/63 (36%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P   P Y  PP   PE + P    P P   P  PP PP  P  PPP   P  P       
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP 256

Query: 119 GPF 121
            P 
Sbjct: 257 PPP 259

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 54  GGGYGPAPA--PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
             GY   P   PE   P    P P   P  PP P   P  PPP   P  P      PP P
Sbjct: 200 PPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPP 259

Query: 112 PKPPS 116
           P+PP 
Sbjct: 260 PQPPQ 264

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 45  RQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP 104
            QE              +    P       PI PP   P    PPPPPPPPPPPPP    
Sbjct: 144 AQEQSNSTTSDLLSSDESV---PSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQQ 200

Query: 105 PPPPP 109
                
Sbjct: 201 STSAI 205

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 20/62 (32%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                     P P  P         P    PP   P  P PPP    P  PP PP PP P 
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

Query: 119  GP 120
             P
Sbjct: 2850 LP 2851

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 51  IIGGGGYGPAPAPEYCPPPPPPPEPICPPPP--PPEPICPPPPPPPPPPPPPPPPPPPPP 108
           ++G G             PPPPPE   P     PP+ +        P   P PP PPPP 
Sbjct: 260 VVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPA 319

Query: 109 P 109
           P
Sbjct: 320 P 320

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
                P P P     PP P      PPPPP P  P   P   PPP PP            
Sbjct: 733 PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA-PAAAPAAAPPPSPPSEEEEMAEDDAP 791

Query: 114 PPSPFGPFASERI 126
                    +E +
Sbjct: 792 SMDDEDRRDAEEV 804

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 16/72 (22%), Positives = 18/72 (25%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G     P P       PPP P P       P     PPP   PP     P          
Sbjct: 110 GPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASS 169

Query: 113 KPPSPFGPFASE 124
           +  +       E
Sbjct: 170 RQAALPLSSPEE 181

Length = 1352

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 20/60 (33%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           G A A        P  +P    PP       P P  PP P P   P P P P+      P
Sbjct: 70  GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

Length = 226

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 16/59 (27%), Positives = 17/59 (28%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
            PA AP      P  P    PP P   P    P   P   P      P PP +      
Sbjct: 402 APAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV 460

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPP---PPPPPPPPRPPKPP 115
            APA    P    P          P    P   P P    PPP    PP    P P +P 
Sbjct: 456 AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515

Query: 116 SPFGPFASERI 126
           +    + +E I
Sbjct: 516 AAPAGWVAESI 526

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 22/89 (24%)

Query: 59  PAPAPEYCPPPPPPPEPICPPP---------PPPEPIC-------------PPPPPPPPP 96
           PAPA     P   P                 P PE +              P P P P  
Sbjct: 397 PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAA 456

Query: 97  PPPPPPPPPPPPPRPPKPPSPFGPFASER 125
            P     P    PRP    +   P  +  
Sbjct: 457 APAAAARPAAAGPRPVAAAAAAAPARAAP 485

Length = 700

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 15/53 (28%), Positives = 15/53 (28%), Gaps = 1/53 (1%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
            PA A    P               P      P PPP PP  PP PP      
Sbjct: 271 QPATAAP-APSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPP-PPPPPPPPPPPPPRPPKPPSP 117
           P PAP   PPP P                PPP    PP P P  P  P P P      +P
Sbjct: 377 PTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAP 436

Length = 620

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 80  PPPPEPICPPPPPPPPPPPPPPPPPPPPP---PRPPKPP 115
           P PP+P    PPPPPPPP     PP           +  
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRAL 297

Length = 584

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  PAPAPEYCPPPPPPPEPICP---PPPPPEPICPPPPPPPPPPPPPPPPPP--PPPPRPPK 113
           P+ AP   P PP  P+   P   P  P      PPPPP PP     PP P   PPP+   
Sbjct: 223 PSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQP 282

Query: 114 PPSP 117
            P P
Sbjct: 283 TPHP 286

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 17/65 (26%), Positives = 19/65 (29%), Gaps = 2/65 (3%)

Query: 71  PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAF 130
           PP  P   PP P E   P  P  P   P PP PP          P       +     A 
Sbjct: 28  PPGTP--APPGPAEDAHPEFPERPRDAPAPPAPPRATDGDRDPQPLADALAEAMARAAAA 85

Query: 131 KVIQR 135
           +    
Sbjct: 86  RFAAG 90

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           S    L +L +L     ++NN T   P +      L ELD+S+NK+    P  + N+ NL
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNL 165

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
             LDL FN  S          +L+ L L+ NK S   PE    +    +  +NN     +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-EL 224

Query: 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
            SS+   K  L  L L+N     LP  IG LSN    D+ NN+++     S G L++++ 
Sbjct: 225 LSSLSNLKN-LSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRE 281

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
           L+L+ N     +P I   L  L  L   
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNL 309

Length = 394

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPP-PPPPPPPPP------------PPPP 105
               AP    PP   P    PPP   +P  PPPPP PPPP  P              PP  
Sbjct: 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSR 2869

Query: 106  PPPPRPPKPPSP 117
             P  +P  P  P
Sbjct: 2870 SPAAKPAAPARP 2881

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 15/64 (23%), Gaps = 3/64 (4%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPP---PPPPPPPPPPPPRPPKPPS 116
           A        P  PP    P P        P   P   P      P PP    P     P 
Sbjct: 405 AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464

Query: 117 PFGP 120
              P
Sbjct: 465 RVAP 468

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 19/60 (31%), Positives = 20/60 (33%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
                  P     PPP    PP P P    PPP PPPPPP        +P    A     
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Length = 620

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 41  AETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPP--PPP 98
            ET    LE  +        P  E       PP    PP        PPPPPP       
Sbjct: 33  LETTLSLLEAKLAS-----IPGLEDVTVQTTPP----PPASAITNGGPPPPPPARAEAAS 83

Query: 99  PPPPPPPPPPPRPPKPPSP 117
           PPPP  P  PP  P+P +P
Sbjct: 84  PPPPEAPAEPPAEPEPEAP 102

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 14/39 (35%), Positives = 16/39 (41%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P PP  P   PPPPPPPP     PP         +  + 
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRAL 297

Length = 584

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP-PRPPKPP 115
            AP       PP     + PPP  P    P P        P  PP P PP        
Sbjct: 693 RAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGA 750

Length = 753

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 16/71 (22%), Positives = 17/71 (23%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            GGG G  P     P  P            P    P       P        PP P   P
Sbjct: 394 PGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAP 453

Query: 113 KPPSPFGPFAS 123
           +P      F  
Sbjct: 454 QPAVRLNSFED 464

Length = 598

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 16/65 (24%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                G    P       P   P  P P  P       P  P P P   PP         
Sbjct: 660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA 719

Query: 113 KPPSP 117
           +PP  
Sbjct: 720 QPPQA 724

Length = 824

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 21/58 (36%), Positives = 23/58 (39%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           P       PP P  P    PP  P  P+ P PP PP  P  P PP  P  P    P +
Sbjct: 99  PFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPLLPDLPLEAWPAT 156

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 45  RQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP----------- 93
            +E+E  +      P       PP    P+ + PP     P   PP  P           
Sbjct: 156 LEEVEAQLQQRQQAPQLPQ---PPQQVLPQGM-PPRQAAFPQQGPPEQPPGYPQPPQGHP 211

Query: 94  ----PPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
               P    P P   P  PP PP+ P    P   
Sbjct: 212 EQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 69  PPPPPEPICPPP----PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           P P  E +  P     P P P       P  P PP       P P P + P
Sbjct: 115 PAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEP 165

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 23/90 (25%), Positives = 25/90 (27%), Gaps = 19/90 (21%)

Query: 53   GGGGYGPAPAPEYCPPPPPPPEPICP-----PPPPPEPICPPPPPPPP------------ 95
                    P PE     P P     P          +   PP  P               
Sbjct: 2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

Query: 96   --PPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
              PPPPPP P P P       P P GP A+
Sbjct: 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 14/59 (23%), Positives = 14/59 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                     P  P     P PPP       P        P PPP    PP P      
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Length = 620

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 83  PEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
           P P  P PP   PPPPPPPP     PP   +        A E I L 
Sbjct: 259 PAP--PQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLE 303

Length = 584

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 14/51 (27%), Positives = 15/51 (29%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
           G  P      PPPP       P P    +   P  PP P PP         
Sbjct: 701 GGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 6/58 (10%)

Query: 59  PAPAPEYCPPP------PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
              AP    PP      PPPP+      P P        P  PP P PP         
Sbjct: 694 APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 18/63 (28%), Positives = 20/63 (31%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
               A +   PP  P      P          PPPPPP P P P       P PP P +  
Sbjct: 2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729

Query: 119  GPF 121
               
Sbjct: 2730 QAS 2732

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 27/82 (32%), Gaps = 26/82 (31%)

Query: 70   PPPPEPICPPPPPPEPICPPPPPPPPPPPP--------------------------PPPP 103
            PPPP P   PP  P+   PPP P P P  P                           P  
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 104  PPPPPPRPPKPPSPFGPFASER 125
            P PP P PP   +P  P  S  
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPS 2632

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 19/85 (22%), Positives = 20/85 (23%), Gaps = 10/85 (11%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPE----------PICPPPPPPPPPPPPPPPP 103
                P        PP     P   PP  P               P    P P   P  P
Sbjct: 171 QLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP 230

Query: 104 PPPPPPRPPKPPSPFGPFASERIQL 128
           P PP      PP     F     Q+
Sbjct: 231 PLPPQLPQQPPPLQQPQFPGLSQQM 255

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP 106
           P P P+  PPPPPPP    P PP PE     P    P         P 
Sbjct: 267 PEPEPQ--PPPPPPP----PEPPEPEEEPDEPDQTDPDDGEETDQIPE 308

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 59  PAPAPEYCP-----PPPPPPEPICPPPPPP--EPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           P   P Y P     PPPP   P+ PP P P   P   PPPP   PPP   P PP P   P
Sbjct: 64  PVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNYPYPPGPGQDP 123

Query: 112 PKP 114
             P
Sbjct: 124 YAP 126

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICP-PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           G        AP   PP P P  P  P    P +P   P   PP      P   PP   + 
Sbjct: 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Query: 112 PKPPSPFG 119
              PSP  
Sbjct: 728 ASAPSPAA 735

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 16/65 (24%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
                  P  PP   P   PP    P  P    P       P P P          S   
Sbjct: 179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSD 238

Query: 120 PFASE 124
             +SE
Sbjct: 239 SSSSE 243

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 17/68 (25%), Gaps = 3/68 (4%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP---PPPPPPRPPKPPSP 117
           PA       P   +    P        P       P P   P      P  P    PP+P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 118 FGPFASER 125
               A+  
Sbjct: 426 VAAPAAAA 433

Length = 618

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           PA A     PPPPPP       PPP     P  P  PP  P P  P        K P
Sbjct: 62  PASAITNGGPPPPPPARAEAASPPP-----PEAPAEPPAEPEPEAPAENTVTVAKDP 113

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
             PE  P PPPPP    PPP PPEP   P  P    P         P 
Sbjct: 265 RLPEPEPQPPPPP----PPPEPPEPEEEPDEPDQTDPDDGEETDQIPE 308

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/59 (30%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PA  P+   P   P  P   P P P    P P      P  P   P P P   P P   
Sbjct: 132 PAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190

Length = 333

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PP  PPPPPPPP   PP +PP PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 19/30 (63%), Positives = 19/30 (63%), Gaps = 4/30 (13%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
           PP  PP    PPPPPP   PP  PPPPPPP
Sbjct: 5   PPGNPP----PPPPPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 18/27 (66%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 90  PPPPPPPPPPPP---PPPPPPPPRPPK 113
           PP  PPPPPPPP   PP  PPPP PP 
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31

Length = 2365

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 59  PAPAPEY-CPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            APAP   CP P P   P   P  PP  +CP P  P P  PP     PP PP P   P+P
Sbjct: 101 AAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAP 160

Length = 280

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPP---PPPPPPPPRPPKP 114
              P      PPPPP  P     PP     PPP   P P P  P     P PPP +P   
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305

Query: 115 PSPFGPFASER 125
           P    P   +R
Sbjct: 306 PLVQQPQGQQR 316

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 15/76 (19%), Positives = 16/76 (21%), Gaps = 1/76 (1%)

Query: 48  LEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
           L+      G G    P     P  P     P      P    P       P        P
Sbjct: 387 LQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446

Query: 108 PPRPPKPPSPFGPFAS 123
           P     P  P     S
Sbjct: 447 PAPAAAPQ-PAVRLNS 461

Length = 598

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 8/67 (11%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPP--------PPPPPPPPPPPR 110
           P       P  P PP       P P P+  P        P          PP P PPPP 
Sbjct: 135 PDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPV 194

Query: 111 PPKPPSP 117
            P+P + 
Sbjct: 195 VPQPSTM 201

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 27/106 (25%)

Query: 33  EVAAGDVVAE--TRRQELE-----------IIIGGG--------------GYGPAPAPEY 65
           +V +GDV+AE  T +  +E           I++  G                G + +   
Sbjct: 29  KVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGESASDAG 88

Query: 66  CPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
             P          P            P P  P  P       P  P
Sbjct: 89  AAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 24/89 (26%), Gaps = 15/89 (16%)

Query: 29  SLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICP 88
            +  +V  GD V+      L ++I      PA A     P    P           P   
Sbjct: 174 EIKVKV--GDKVSV---GSLLVVIEVAAAAPAAAA---APAAAAP----AAAAAAAP--- 218

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            P P     P    P     P      SP
Sbjct: 219 APAPAAAAAPAAAAPAAAAAPGKAPHASP 247

Length = 547

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 12/38 (31%)

Query: 71  PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
           P       P   P P    P P   P P P P   P P
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTP 425

Length = 584

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 48  LEIIIGGGGYGPAPA-----PEYCPPPPPPPEPICPPPPPPEP-------ICPPPPPPPP 95
           +E++   GG  P+PA      +  P P  P     P P  PE        +  P   P P
Sbjct: 371 IELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTP 430

Query: 96  PPPPPPPPPPPPPPRPPKPPSP 117
              PP     P PP P      
Sbjct: 431 EQQPPVARSAPLPPSPQASAPR 452

Length = 620

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 16/52 (30%)

Query: 66  CPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                   +     P PPEP   P    PP      PP   P PRP   P  
Sbjct: 860 AAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRV 911

Length = 1352

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 15/60 (25%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           PAP      P PPPP     P           P    P    P     P P        F
Sbjct: 19  PAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDF 78

Length = 475

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            +       P  P P P   PPP P     P        P PPP    PP   P  P+ 
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 15/52 (28%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                   P  P P P     P P  P  P        P PPP    PP P 
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPV 417

Length = 620

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P P P  P  PPPPPP PP P   P  P          +   P
Sbjct: 267 PEPEPQPP--PPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIP 307

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 57  YGPAPAPEYCPPPPPPPEPIC-------PPPPPPEPICPPPPPP---PPPPPPPPPPPPP 106
           Y     P   PP PP  +P         PPPP   P+ PP P P   P   PPPP   PP
Sbjct: 50  YEEPYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPP 109

Query: 107 PPPRPPKPPSPFGPFA 122
           P   P  P     P+A
Sbjct: 110 PQNYPYPPGPGQDPYA 125

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 8/47 (17%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
              P          P            P P  P  P       P  P
Sbjct: 88  GAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Length = 464

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 25/123 (20%)

Query: 33  EVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPP-PPPPEPICPPPPPPEPICPPPP 91
           EV   +   +  R  ++I           A +  PP     P+P+ PP     P+ P  P
Sbjct: 104 EVPYNEQTPQVPRSTVQI--------QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPSP-------FGPF------ASERIQLAFKVIQRFKK 138
            P    P  P       P+               G F       S R QLAF      + 
Sbjct: 156 APVRTQPAAPVTQAVEAPKVEAEKEKEQRWMVQCGSFKGTEQAESVRAQLAF---AGIES 212

Query: 139 RIT 141
           RIT
Sbjct: 213 RIT 215

Length = 256

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 22/65 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  A     PPP P     PP   P    P P P  P P      P   P R P P  P 
Sbjct: 185 PGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPL 244

Query: 119 GPFAS 123
            P  +
Sbjct: 245 QPQTA 249

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 20/35 (57%), Positives = 20/35 (57%)

Query: 80  PPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           P PPEP  P PP P PPPPP PP P P P   P  
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVN 41

Length = 94

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYF 403
              D+ NNRLT     +F  L +++ L+L+ N      PE    LP L +L LS N  
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 16/73 (21%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPP----------------PPP 102
            P P P+  PPPPPPP P  P  P  +P     P    P P                 P P
Sbjct: 2923 PPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982

Query: 103  PPPPPPPRPPKPP 115
             P    P    PP
Sbjct: 2983 APSREAPASSTPP 2995

Length = 3151

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPP-----PPPPPPRPPKPPSPFGPFAS 123
           P  P E   P P      P P P        P PP   P P     P A+
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAA 256

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 19/84 (22%), Gaps = 1/84 (1%)

Query: 35  AAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPP 94
           A     A           G       P     P      +          P  PPP P P
Sbjct: 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

Query: 95  PPPPPPPPPPPPPP-PRPPKPPSP 117
             P  P    P  P P P   P  
Sbjct: 688 AAPAAPAGAAPAQPAPAPAATPPA 711

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPP--PPPPPPPPPPPPPPPPPPRPPKPP 115
               APE+ P     P+        P       P  PPP P P  P  P    P  P P 
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 116 SPFGP 120
               P
Sbjct: 705 PAATP 709

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 14/59 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P               P       P    P P P  P  P    P  P P     PP+ 
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712

Length = 824

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 69  PPPPPEPICP--------PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P P    + P        P P  +P  P P  PP P  P  P PP  P  P  P  P  P
Sbjct: 75  PVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPP 134

Query: 121 F 121
            
Sbjct: 135 M 135

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
            P P  +P     P  +P      P   P   P   P  P  +P        P  +E+
Sbjct: 200 APKPTQQPT-VQNPAQQP--TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 18/58 (31%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
                      P  P P P   PPP P  P  P        P  PP   SP  P  +E
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 20/51 (39%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                    PPPP +   PP P PP P P    PPP PPP PP        
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSN 565

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 18/67 (26%), Positives = 23/67 (34%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
              P      P  P P+P+  P   P+P  P   P  P   P P P    P    +   P
Sbjct: 111 AQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQP 170

Query: 118 FGPFASE 124
             P A+ 
Sbjct: 171 AEPVAAP 177

Length = 333

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 10/57 (17%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
           GGGG  P       PPP  P       P P        P  PP P PP         
Sbjct: 705 GGGGGLP-------PPPDLPAA---AGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 18/50 (36%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
                  +   P          PP   P    PPPPPPPPPPP P    S
Sbjct: 152 TSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQQS 201

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 23/55 (41%)

Query: 71  PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
              E +        PI PP   P    PPPPPPPPPPPP   +  +       ER
Sbjct: 157 SSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKER 211

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 16/58 (27%), Positives = 16/58 (27%), Gaps = 4/58 (6%)

Query: 62  APEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
            P   P PP P E   P  P      P   P PP PP        P P          
Sbjct: 27  GPPGTPAPPGPAEDAHPEFPE----RPRDAPAPPAPPRATDGDRDPQPLADALAEAMA 80

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 25  ILHSSLHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPE 84
           I+      E+  G+V+A T  +E E I     Y P+ +     P  P  +P   PPPP E
Sbjct: 169 IVKGDGAKEIKVGEVIAITVEEE-EDIGKFKDYKPSSSAA---PAAPKAKP--SPPPPKE 222

Query: 85  PICPPPPPPPPPPPPPPPPPPPPPPR 110
                P   P P    P  PP    R
Sbjct: 223 EEVEKPASSPEPKASKPSAPPSSGDR 248

Length = 539

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPP--PPPPPPPPPPPPPPPPRPPKP--PSPFGP 120
           P  P P +P+ P P  P+P+ P P  P  P P  P P  P P  P P  P  P P  P
Sbjct: 563 PIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIP 620

Length = 955

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 16/38 (42%), Positives = 16/38 (42%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
               P P   PP PP   PPP    PP  PPR P  P 
Sbjct: 910 AASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPP 947

Length = 991

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 17/48 (35%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           P  P  P  +    P P P   P   PP  P P    P  P P   +P
Sbjct: 94  PAMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIPDAVQP 141

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 19/84 (22%)

Query: 59   PAPAP-EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP-------------- 103
            P+P P +   P PPPP P      P     P  PPP  P   P P               
Sbjct: 2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRA 2673

Query: 104  ----PPPPPPRPPKPPSPFGPFAS 123
                 PP  PR        G   S
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTS 2697

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 17/71 (23%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            G    PA A     P    PE        P+        P       P  PPP P    
Sbjct: 630 AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAA 689

Query: 113 KPPSPFGPFAS 123
            P +P G   +
Sbjct: 690 -PAAPAGAAPA 699

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 16/60 (26%), Positives = 18/60 (30%), Gaps = 6/60 (10%)

Query: 59  PAPAPEYCPPPPPP------PEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            +PAP      P        P+P    P        P P   P P       P   PRPP
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 15/58 (25%), Positives = 16/58 (27%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           A   E      P      P P PP     P  P        P PPP     P   P+ 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 4/66 (6%)

Query: 59  PAPAPEYCPPPPPPPEPI--CPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP--PRPPKP 114
               PE   PP   P P    P P       P P  P   P  P   P P P    P   
Sbjct: 105 VQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA 164

Query: 115 PSPFGP 120
              F P
Sbjct: 165 QQAFQP 170

Length = 333

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 17/25 (68%), Positives = 17/25 (68%)

Query: 75 PICPPPPPPEPICPPPPPPPPPPPP 99
          P  PPPPPP P   PP  PPPPPPP
Sbjct: 6  PGNPPPPPPPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP--PSPFGPFASE 124
           P PP   E I P P P E          P    P     PP P+PP P  P P       
Sbjct: 146 PEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHR 205

Query: 125 R 125
           R
Sbjct: 206 R 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 12/43 (27%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           P       P   P      P P   P P P P   P P    P
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEP 430

Length = 584

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 20/62 (32%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFK 137
           P           P P    P P   P P P P     P+   P A+    +   V  + +
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVR 447

Query: 138 KR 139
           +R
Sbjct: 448 QR 449

Length = 584

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPP--PPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           P+P+       P  P+    P   PP   + PP   P  PP   P    P   +  K   
Sbjct: 400 PSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459

Query: 117 PFG 119
              
Sbjct: 460 VSK 462

Length = 614

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 25/73 (34%), Positives = 26/73 (35%), Gaps = 16/73 (21%)

Query: 63  PEYCPPPPPPPE----PICPPPPPP------------EPICPPPPPPPPPPPPPPPPPPP 106
               P  PP P     P  PPPPPP             P     PPP P  PP  PPPPP
Sbjct: 157 KSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPLGPPMIPPPPP 216

Query: 107 PPPRPPKPPSPFG 119
             P   +     G
Sbjct: 217 MSPDFGEDDEALG 229

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 23/89 (25%), Positives = 23/89 (25%), Gaps = 17/89 (19%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP------- 105
                G APA     P P  P       P      P   PP      P   PP       
Sbjct: 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGAS 729

Query: 106 ----------PPPPRPPKPPSPFGPFASE 124
                     P PP P  PP P G  A  
Sbjct: 730 APSPAADDPVPLPPEPDDPPDPAGAPAQP 758

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 15/60 (25%), Positives = 15/60 (25%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
             P               P PP     P    PP      PP   P P   P P    GP
Sbjct: 856 SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGP 915

Length = 1352

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 13/52 (25%), Positives = 15/52 (28%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                  + P    P      P P P  PP P P   P P   P+      P
Sbjct: 78  GDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

Length = 226

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 17/56 (30%), Positives = 17/56 (30%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
                 A    P PPPPP              P    PPPP P  P P P     P
Sbjct: 539 PLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 17/44 (38%), Positives = 18/44 (40%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            P  +    PPP   P  PP   PPP    PP  PP  P  PP 
Sbjct: 905 APGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPA 948

Length = 991

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP-PPPPPPRPPK 113
                 P P   PP    P  +      P+P+ PP  PP    P  P P P P P   P 
Sbjct: 85  AAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPA 144

Query: 114 PPSPFGPFASERIQLA 129
                  F    +QL 
Sbjct: 145 AAPTGQAFV---VQLG 157

Length = 226

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 23/55 (41%), Positives = 24/55 (43%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           Y   P P     PPPP     PPPP   P+   PPPP    PPPP      PP P
Sbjct: 3   YKSPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPR 110
           P  P PPP P PP P PPP  P 
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 20/91 (21%), Positives = 23/91 (25%), Gaps = 17/91 (18%)

Query: 53  GGGGYGPAPAPE-----YCPPPPPPPEPICPP------------PPPPEPICPPPPPPPP 95
                 P+P+P        P  P                              P P P  
Sbjct: 290 SPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSR 349

Query: 96  PPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
            P P  PPPP  P  P K P P    +S   
Sbjct: 350 SPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380

Length = 1352

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 16/65 (24%), Positives = 17/65 (26%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G G  G     +      P  EP     P PE      P P       P P       P 
Sbjct: 42  GKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPE 101

Query: 113 KPPSP 117
             P P
Sbjct: 102 PEPEP 106

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 93  PPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRI 140
           PP  PPPPPPPP   PP  P PP P G    +R +    ++       
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLSIVGDILGHS 52

Length = 2365

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP 106
           PA      P   P P       PEP   P P P P   P P    P
Sbjct: 388 PANLLHNAPQAAPAP---SAAAPEPKHQPAPEPRPVLAPTPASGEP 430

Length = 584

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 19/62 (30%), Positives = 22/62 (35%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P P+  P P  P  P   P   P P   P P   PP     P PP P    P+  +  
Sbjct: 398 DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457

Query: 119 GP 120
            P
Sbjct: 458 KP 459

Length = 620

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           PP PP+P   P P P P P P P P P P  +P
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 14/57 (24%), Positives = 15/57 (26%), Gaps = 5/57 (8%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            +       P P       P P  P   PPP  P  P   P P   P         P
Sbjct: 334 ESSRGAAVSPGPSP--SRSPSPSRP---PPPADPSSPRKRPRPSRAPSSPAASAGRP 385

Length = 1352

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP 104
           PAP    PP   P P  PPPPP +   PP               
Sbjct: 259 PAPP--QPPEEEPPP--PPPPPEDDDDPPEDEEEQDDAEDRALE 298

Length = 584

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 17/28 (60%), Positives = 17/28 (60%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           P PP PP P PP P PPPPP P  P P 
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPE 34

Length = 94

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 5/68 (7%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEP-----ICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            A +         PP    P P   +P     +  P   P P    P PP    PP    
Sbjct: 13  HASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATT 72

Query: 114 PPSPFGPF 121
                 P 
Sbjct: 73  QTPQLNPL 80

Length = 590

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 26/63 (41%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP-PRPPKPPSP 117
           PA AP    PP   P    PP   P    PP   P  P P PPP  PP P  RP   P+P
Sbjct: 737 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP 796

Query: 118 FGP 120
             P
Sbjct: 797 QPP 799

Length = 991

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 21/70 (30%), Positives = 21/70 (30%), Gaps = 8/70 (11%)

Query: 59  PAPAPEYCPP---PPPPPEPICPPPPPPEPICPPPPPPPPP-----PPPPPPPPPPPPPR 110
           PAP P         P        PPPPPE   P     PP           P   P PP 
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314

Query: 111 PPKPPSPFGP 120
           PP P      
Sbjct: 315 PPPPAPAGDA 324

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 20/57 (35%), Positives = 23/57 (40%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
               P P+PE    P PPP P  PPPPP + + P     P PP     P P      
Sbjct: 220 QSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 16/57 (28%), Positives = 17/57 (29%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
                     P P P     P  PPPP  P  P   P P   P  P +  G     R
Sbjct: 333 SESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRR 389

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 14/55 (25%), Positives = 14/55 (25%)

Query: 63  PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P               P P P P  PP P  P  P        P PP     P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPI 415

Length = 620

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 84  EPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
           + + PP PP P P P P P P P P   P+P   + P  + ++
Sbjct: 916 QEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKV 958

Length = 1250

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP------PPPPPPRPP 112
           P         P P  EP  PPP  P+P     P    P PPP  P       PP  P+  
Sbjct: 104 PQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQ 163

Query: 113 KPPSP 117
           + P P
Sbjct: 164 QNPPP 168

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           PAPAP   P P   P P   PP  P P     P  P  P  P         R
Sbjct: 466 PAPAPAAAPEPTAAPAP--APPAAPAP--AAAPAAPAAPAAPAGADDAATLR 513

Length = 824

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 16/53 (30%), Positives = 16/53 (30%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
              GP       PPPP  P    P P     I  P  PP P PP         
Sbjct: 699 RPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 17/71 (23%), Positives = 18/71 (25%), Gaps = 5/71 (7%)

Query: 59  PAPAPEYCPPP---PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPP--PPPPPPPRPPK 113
           P P P     P   P P     PP             P     P     P PP P     
Sbjct: 208 PRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEA 267

Query: 114 PPSPFGPFASE 124
           PP+   P    
Sbjct: 268 PPANATPAPEA 278

Length = 401

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 17/29 (58%), Positives = 17/29 (58%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P PP PP P PP P PPPPP  P   P P
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPEP 35

Length = 94

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 41  AETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPP 100
           A T  + L+ + G G    A AP       PPP              PP PP   PPP  
Sbjct: 884 APTLAEALDQVFGPGTGRVATAPGGDAASAPPPGA-----------GPPAPPQAVPPPRT 932

Query: 101 PPPPPPPPPRPPKPPS 116
             PP  PP  P  PP+
Sbjct: 933 TQPPAAPPRGPDVPPA 948

Length = 991

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRP 111
           P  P PPP P PP P PPP   P
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 16/66 (24%), Gaps = 1/66 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP-PPPPPRP 111
                     P+        P       P   P  P P  P  P    P  P P P   P
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Query: 112 PKPPSP 117
           P   + 
Sbjct: 710 PAGQAD 715

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 16/62 (25%), Positives = 16/62 (25%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           A           P E   P    P       P  P  P PP  P  P     P  PS F 
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQ 220

Query: 120 PF 121
             
Sbjct: 221 SD 222

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 16/58 (27%), Gaps = 2/58 (3%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
                      P P P    P P  PPPP  P  P   P     P SP         +
Sbjct: 333 SESSRG-AAVSPGPSP-SRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 19/86 (22%), Positives = 23/86 (26%), Gaps = 15/86 (17%)

Query: 59  PAPAPEYCPP--------PPPPPEPICPPPPP------PEPICPPPPPP-PPPPPPPPPP 103
           PAPA +  PP          P P      P        P+P    P        P P   
Sbjct: 489 PAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548

Query: 104 PPPPPPRPPKPPSPFGPFASERIQLA 129
           P P      +P     P  +    L 
Sbjct: 549 PAPRAAAATEPVVAPRPPRASASGLP 574

Length = 700

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 25/95 (26%), Gaps = 19/95 (20%)

Query: 51  IIGGGGYGPAPAPEYCPPPPP--PPEPICP----------------PPPPPEPICPPPPP 92
           I  GG Y  A    Y PP PP   P P  P                P   P    P   P
Sbjct: 158 IPAGGTYILASG-TYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQP 216

Query: 93  PPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
               P   P   P   P  P         A +  Q
Sbjct: 217 TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 68  PPPPPPEPICPPPP-PPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
           P  P PEP  PP    P         P     PP  P  PPPP      +P  P      
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 127 QLA 129
           QL 
Sbjct: 421 QLL 423

Length = 647

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 56  GYGPAPAPEYCPPP-----------PPPPEPICPPPPPPEPICPP---PPPPPPPPPPPP 101
            Y P P P   P             PPPP     PPP P+P   P   PPPP   PPP  
Sbjct: 53  PYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQN 112

Query: 102 PPPPPPPPRPPKPPSP 117
            P PP P + P  P P
Sbjct: 113 YPYPPGPGQDPYAPRP 128

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 23/44 (52%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           P PPEP  P P PP P+  PPPPP PP P P P   P     PK
Sbjct: 7   PKPPEP--PAPLPPAPV--PPPPPAPPAPVPEPTVKPVNAEAPK 46

Length = 94

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 90  PPPPPPPPPPPPPPPPPPPPRPP 112
           P  P PPP P PP P PPP  PP
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPP-PPPPPPPPPPPPPPPPRPPKPPS 116
            PP         P P  EP  PPP  P PPP   P    P PPP+ P+   
Sbjct: 102 LPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQ 152

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 22/102 (21%)

Query: 40  VAETRRQELEIIIGGGGY--------------GPAPAPEYCPPPPPPPE----PICPPPP 81
           VA TR ++  I+ G  G                 A A      P P        +     
Sbjct: 852 VAMTRAEDRLIVCGYRGKRESPKDSWHALVKRALAAAGIAWQEPHPAQGKAEWRLRFTRR 911

Query: 82  PPEPICPPPPPPPPPPPPPPPP----PPPPPPRPPKPPSPFG 119
             +P+  P            P     P P  P  P+P +P G
Sbjct: 912 DWDPVGLPVEAAQTDTLEALPDWLRAPAPAEPALPRPLAPSG 953

AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species [DNA metabolism, DNA replication, recombination, and repair]. Length = 1135

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 19/63 (30%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           GG          PP P P +         + +      P         P P   PRP  P
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 115 PSP 117
           P+P
Sbjct: 403 PAP 405

Length = 504

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 17/63 (26%), Gaps = 4/63 (6%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
             P PA     PPPPP     P P       PPP PP           P       +   
Sbjct: 747 DPPDPAGAPAQPPPPPA----PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802

Query: 117 PFG 119
              
Sbjct: 803 EVA 805

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 18/98 (18%), Gaps = 3/98 (3%)

Query: 32  YEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPP 91
             V      A           G       PA    P  P  P    P      P      
Sbjct: 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAA---PAAPAAPAAPAPAGAAAAPAEASAA 642

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
           P P    P   P     P        +   A      A
Sbjct: 643 PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA 680

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 16/48 (33%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
             P P P     P  PP P  P  P   P P   P  P     RP + 
Sbjct: 341 VSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 19/60 (31%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             A + +   P   P E    P  PP    P  PP    P PP    P         P+P
Sbjct: 165 DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 14/56 (25%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
             +       P P P     P  PPP      P   P P   P  P         +
Sbjct: 333 SESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 20/72 (27%), Gaps = 5/72 (6%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G     P P P     P    E      P   P      P      P    P P P  P 
Sbjct: 250 GPENECPLPRPAPITLPTRIWEASGWNGPSSRP-----GPASSSSSPRERSPSPSPSSPG 304

Query: 113 KPPSPFGPFASE 124
             P+P  P AS 
Sbjct: 305 SGPAPSSPRASS 316

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 12/47 (25%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP 104
              P     P PP  P       P P P  P    PP     P    
Sbjct: 398 AAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAA 444

Length = 576

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 14/52 (26%), Gaps = 3/52 (5%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           PA  P       P  +P   P   P      P P  P   PP         R
Sbjct: 212 PAQQP---TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSR 260

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           AP+P  C  P P      P  P P   CP P P  PP   P  PPP   P P +P     
Sbjct: 83  APSPA-CAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACP 141

Query: 120 P 120
           P
Sbjct: 142 P 142

Length = 280

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK-PPSPFGPFASERIQ 127
            PPP     P P  P+    P PPP  P   P    P    R P+           +R  
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREA 334

Query: 128 LAFKVIQRFKKR 139
           L+ +  +R K+R
Sbjct: 335 LSQEEAKRAKRR 346

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 8/47 (17%), Positives = 9/47 (19%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
                     P            P P  P  P       P  P  +E
Sbjct: 92  AAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 15/56 (26%)

Query: 81  PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRF 136
             P     P    P       P P P     P   +P    A  +   A   ++R 
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRL 252

Length = 547

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 19  LCAFTLILHSSLHYEVAAGDVV--AETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPI 76
           +CA  L+L S+   E A    V   ETR   + I        P  AP    P    PEP 
Sbjct: 356 VCA-RLLLPSASDAESALLQRVERIETRLD-MSIPANLLHNAPQAAP---APSAAAPEPK 410

Query: 77  CPPPPPPEPICPPPPPPPPP 96
             P P P P+  P P    P
Sbjct: 411 HQPAPEPRPVLAPTPASGEP 430

Length = 584

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           PP PP P PP P PPPPP PP P   P+
Sbjct: 9   PPEPPAPLPPAPVPPPPPAPPAPVPEPT 36

Length = 94

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
           PP PP P PP P PPPPP PP   P+P        + +I+
Sbjct: 9   PPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIR 48

Length = 94

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 16/48 (33%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
           P     P  P   P PPPP       P   P P        P + +RI
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRI 249

Length = 539

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 24/53 (45%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPP----PPPPPPPPPPPPPPRPPKPPSP 117
            PPPP     PPPP     PPPP   P    PPPP    PPPP      PP P
Sbjct: 5   SPPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 91  PPPPPPPPPPPPPPPPPPPRPPK 113
           P  P PPP P PP P PPP  P 
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 25/71 (35%), Positives = 26/71 (36%), Gaps = 18/71 (25%)

Query: 59   PAPAPEYCPPPP-PPPEPICPPPPPPEPICPPPPPPPPPPP-------------PPPPPP 104
             A  P   P  P PPP    P  PPP    PP PPPP  P              PP   P
Sbjct: 2816 AALPPAASPAGPLPPPTSAQPTAPPP----PPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 105  PPPPPRPPKPP 115
               P  P +PP
Sbjct: 2872 AAKPAAPARPP 2882

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 19/112 (16%), Positives = 23/112 (20%), Gaps = 9/112 (8%)

Query: 33  EVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPI---------CPPPPPP 83
              A D  + T  +         G   +  P   P     P P                 
Sbjct: 805 SGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGR 864

Query: 84  EPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQR 135
                    P PP P   P    PP      P    P    R     K+   
Sbjct: 865 ARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPM 916

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 17/78 (21%), Positives = 19/78 (24%), Gaps = 18/78 (23%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICP----PPPPPPPPPPPPPPPP--------- 104
           GP P        P    P   P P  +   P    PP    P P  P   P         
Sbjct: 468 GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

Query: 105 -----PPPPPRPPKPPSP 117
                 P        P+P
Sbjct: 528 DPATADPDDAFETLAPAP 545

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 15/60 (25%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P+                P P P P   P  P  P        P PPP +   P      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Length = 620

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 14/39 (35%), Positives = 14/39 (35%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP 105
            PP PP E   PPPPPPE    PP               
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298

Length = 584

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 86  ICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           + P     P P P PPPPPPPP P  P+ 
Sbjct: 259 LLPRATRLPEPEPQPPPPPPPPEPPEPEE 287

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            PAP  E    P    +P   P P  E +  P  P PP       P P P   P    + 
Sbjct: 114 EPAPQEETVADPIQALQP--RPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAI 171

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 7/47 (14%), Positives = 7/47 (14%)

Query: 74  EPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                 P          P            P P  P  P       P
Sbjct: 85  SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 59  PAPAPEYCPPP-------PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           P P     P P       P P +P+ P P  P+P+ P P  P P  P  P P  P   + 
Sbjct: 566 PDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIPDIGQS 625

Query: 112 PKPP 115
             PP
Sbjct: 626 DTPP 629

Length = 955

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP 103
           E  PP PP P+P     P P+P   P P P P P P   P
Sbjct: 917 EVTPPSPPDPDPT----PDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 30/89 (33%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPP-------PPPPPPPPPPP-- 109
           PA AP    PP   P    PP   P    P PPP  PP P       P P PPP   P  
Sbjct: 747 PAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTS 806

Query: 110 ---RPPKPPSPFGPFASERIQLAFKVIQR 135
               P   P   GP      QL    ++R
Sbjct: 807 MQLMPRAAPGQQGPTKQILRQLLTGGVKR 835

Length = 991

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPP--PPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           P   P+Y   PPP  +         P E    P   PP  P P      PP    P    
Sbjct: 156 PPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQ 215

Query: 117 PFGP 120
            +GP
Sbjct: 216 FYGP 219

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 19/64 (29%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           PAPA           E       P         P P   P P  PP P P R  + P   
Sbjct: 358 PAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLV 417

Query: 119 GPFA 122
            P A
Sbjct: 418 APAA 421

Length = 504

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 13/44 (29%), Gaps = 2/44 (4%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
            P PPP  P   PP PP    P      P        P    P 
Sbjct: 91  APRPPPAAPAVQPPAPPAR--PGWGSGGPSQQGAGQQPGYAQPG 132

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 10/41 (24%), Positives = 10/41 (24%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
             P P P  P   PP P   P      P        P    
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQ 130

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 33/67 (49%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 59  PAPAPEYCPPPPPPPEP-----ICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           P P P     PPPPP P       PPPP P     PPPPP P  P  PPPPPP P  P  
Sbjct: 75  PPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGI 134

Query: 114 PPSPFGP 120
           PP P G 
Sbjct: 135 PPPPPGM 141

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 13/38 (34%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP 105
                 E +  P P P P  P  P P  P  P P P  
Sbjct: 44  DLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPAS 81

Length = 153

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 13/31 (41%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           P  PPPPPPPPPP  P              G
Sbjct: 230 PSAPPPPPPPPPPSVPTISNSVESASSDSKG 260

Length = 313

>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 14/46 (30%), Positives = 15/46 (32%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           P P   P    P   P +   P P     PPP   P    P PR  
Sbjct: 168 PGPANEPRTRRPLSAPDDEASPQPKSLATPPPVAAPSRRTPRPRRK 213

Length = 226

>gnl|CDD|236511 PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 15/50 (30%)

Query: 71  PPPEPIC---PPPPP------------PEPICPPPPPPPPPPPPPPPPPP 105
           P   P C    PPPP              P  PP P   P P PPPP PP
Sbjct: 217 PAGSPECEDQAPPPPGDGCGAELASWSDAPFEPPKPTTKPKPKPPPPLPP 266

Length = 275

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 14/44 (31%)

Query: 74  EPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           E +       +   PP P P P     P P       P   P+P
Sbjct: 46  EDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 16/72 (22%), Positives = 16/72 (22%), Gaps = 16/72 (22%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPP----------------PPPPPPPPPPP 102
            P P P   P PP  P         P    P P                 P P P    P 
Sbjct: 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

Query: 103  PPPPPPPRPPKP 114
               PP       
Sbjct: 2991 SSTPPLTGHSLS 3002

Length = 3151

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 11/61 (18%)

Query: 68  PPPPPPEPICPPP----------PPPEPICPPP-PPPPPPPPPPPPPPPPPPPRPPKPPS 116
           P      P  PP                + P    PP  P  P P P  PP P+P + P 
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK 116

Query: 117 P 117
           P
Sbjct: 117 P 117

Length = 226

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 8/32 (25%)

Query: 68 PPPPPPEPICPPPPPP--EPICPPPPPPPPPP 97
          PP  PP    PPPPPP  EP  P  PPPPPPP
Sbjct: 5  PPGNPP----PPPPPPGFEP--PSQPPPPPPP 30

Length = 2365

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 16/77 (20%)

Query: 60  APAPEYCPPPPPPPEPICPP-------------PPPPEPICPPPPPPPP---PPPPPPPP 103
           A +  Y  P  P P P  PP             PPPP     PPP P P   P   PPPP
Sbjct: 45  AYSDSYEEPYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPP 104

Query: 104 PPPPPPRPPKPPSPFGP 120
              PPP+    P   G 
Sbjct: 105 GAVPPPQNYPYPPGPGQ 121

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           PA      P   P P     P P  +P   P P P   P P    P     R
Sbjct: 388 PANLLHNAPQAAPAPSA-AAPEPKHQP--APEPRPVLAPTPASGEPNAAAVR 436

Length = 584

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PP PP P   PP P PPPPP PP P P P  +P    +P
Sbjct: 9   PPEPPAP--LPPAPVPPPPPAPPAPVPEPTVKPVNAEAP 45

Length = 94

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 16/61 (26%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPP------------PPEPICPPPPPPPPPPPPPPPPPPP 106
             P+P     PP PP    PPPP            PP     PPP P  PP  PPPPP  
Sbjct: 163 GPPSPWNPRFPPGPP----PPPPGFGRHGEKPSGWPPFLSGWPPPFPLGPPMIPPPPPMS 218

Query: 107 P 107
           P
Sbjct: 219 P 219

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 13/48 (27%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           P         P P  +P    PP P P      PP   P   P     
Sbjct: 381 PTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLAL 428

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 35  AAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPP 94
           A  D+     R E E+         A        P P  +P    PP PEP      PP 
Sbjct: 359 APADLTQRLNRLEKEVRSLRSAPTAAATAA--GAPLPDFDPRPRGPPAPEPARSAEAPPL 416

Query: 95  PPPPPPP 101
             P   P
Sbjct: 417 VAPAAAP 423

Length = 504

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 13/54 (24%), Positives = 14/54 (25%), Gaps = 6/54 (11%)

Query: 53  GGGGY------GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPP 100
             GG+      G AP P    P   PP P   P               P    P
Sbjct: 78  SSGGFLSGMFGGGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQP 131

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFA 122
           PPPP      P      P       KP SP+  +A
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASPWRKYA 403

Length = 509

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 53  GGGGYGPAPA-PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           GG G GP PA  +      P P P  P P    P   P       PPP P  P  P  RP
Sbjct: 302 GGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATPAVPRARP 361

Length = 416

>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 15/30 (50%), Positives = 15/30 (50%)

Query: 90  PPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           P P P P P PPPP P P P P K     G
Sbjct: 5   PGPKPGPTPTPPPPAPTPEPTPAKHERFIG 34

This family consists mainly of the potato leaf roll virus readthrough protein. This is generated via a readthrough of open reading frame 3 a coat protein allowing transcription of open reading frame 5 to give an extended coat protein with a large c-terminal addition or read through domain. The readthrough protein is thought to play a role in the circulative aphid transmission of potato leaf roll virus. Also in the family is open reading frame 6 from beet western yellows virus and potato leaf roll virus both luteovirus and an unknown protein from cucurbit aphid-borne yellows virus a closterovirus. Length = 460

>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 12/54 (22%), Gaps = 1/54 (1%)

Query: 60  APAPEYCPP-PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           A    Y  P  P     I P                   P  P     PPP  P
Sbjct: 143 AQHLFYIIPGGPSWRTSIKPFSSSHYGSHNSSAYSDHLRPLQPYSGELPPPLGP 196

Length = 424

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 74  EPICPPPPP-PEPICPPPPPPPPPPPPPPPPPPPPPP 109
           + + PP PP P+P   P P P P P P P P P   P
Sbjct: 916 QEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 59  PAPAPEYCPPP---PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           P   P Y PP    PPP +      P P P  P       PP  P     PPP     P 
Sbjct: 116 PQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQ 175

Query: 116 SP 117
             
Sbjct: 176 VS 177

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 13/45 (28%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
             P P P  P   PP PP  P      P      + P    P   
Sbjct: 90  GAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 17/73 (23%), Positives = 19/73 (26%), Gaps = 3/73 (4%)

Query: 34  VAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP 93
           V  GDVV       +  +I   G   A A     P  P PEP                 P
Sbjct: 61  VEEGDVVPVG--SVI-AVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAP 117

Query: 94  PPPPPPPPPPPPP 106
             P        P 
Sbjct: 118 AAPAAAAAKASPA 130

Length = 411

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
             P P   PP  PP     P  P       PPP P  PPP   P    PP + P
Sbjct: 154 QPPPPHAMPPASPPAAQPAPSAPAS----SPPPTPASPPPAKAPKSSHPPLKSP 203

Length = 274

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 11/48 (22%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
            P P P     P   P PPPP     P      P            ++
Sbjct: 16  QPAPAPPS---PAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDK 60

Length = 475

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  PAPAPEYCPPPP-PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             P+P++   PP    +P  P   PPE     PP   P P  P P P   P   P+P  P
Sbjct: 84  ARPSPQHQYQPPYASAQPRQPVQQPPEA--QVPPQHAPRPAQPAPQPVQQPAYQPQPEQP 141

Query: 118 FGPFASERIQLAFKVIQR 135
                S ++  A + +  
Sbjct: 142 LQQPVSPQVAPAPQPVHS 159

Length = 333

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 19/76 (25%), Positives = 19/76 (25%), Gaps = 12/76 (15%)

Query: 54  GGGYGPAPAPEYCPP-------PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPP----- 101
           GG  G    P   P         P       P  P         P  P P  PP      
Sbjct: 651 GGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGL 710

Query: 102 PPPPPPPPRPPKPPSP 117
           PPPP  P      P  
Sbjct: 711 PPPPDLPAAAGPAPCG 726

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 14/53 (26%), Positives = 15/53 (28%), Gaps = 5/53 (9%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP 105
            GGG G  P P+      P P        P       PP P PP         
Sbjct: 704 PGGGGGLPPPPDLPAAAGPAPCGSSLIASPT-----APPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 13/25 (52%), Positives = 13/25 (52%)

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPS 116
           P  P PPP P PP P PP    P S
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPPVS 25

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP----PPPPPPRPPKP 114
              AP    PPP  P P+ PP  PP     P        PP   P    PP   P   +P
Sbjct: 687 IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP 746

Query: 115 PS 116
           P+
Sbjct: 747 PA 748

Length = 991

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 3/65 (4%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEP---ICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G  P+       PP P P  +       E         P         P P   P PR P
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 113 KPPSP 117
             P P
Sbjct: 403 PAPEP 407

Length = 504

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 11/39 (28%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
                +   PP P P P     P P       P   P P
Sbjct: 51  VAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
               A  Y PPP P P P C     PEP        PPP  P    P  PP  P 
Sbjct: 29  RRRDALAYAPPPRPEPPPPC-DEDRPEPRADTRASDPPPEAPTDADPAQPPDDPD 82

This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. Length = 201

>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 11/68 (16%), Positives = 13/68 (19%), Gaps = 4/68 (5%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
                                P    PP         P       K         S  I+
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE---STSIR 281

Query: 128 LAF-KVIQ 134
           +A  KV Q
Sbjct: 282 VAVEKVDQ 289

Length = 670

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
           GP P P      PPP +         E   P  P PP  PPP P P P  
Sbjct: 161 GPRPVPTPPGGTPPPDDD-----EGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 14/59 (23%), Positives = 15/59 (25%), Gaps = 5/59 (8%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PA  P   P P P      PP  P   +   P        P         P  P    P
Sbjct: 87  PAATPTSAPTPTP-----SPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|216325 pfam01140, Gag_MA, Matrix protein (MA), p15

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           PPP     + PP    P   P P  P P  PPRP  
Sbjct: 92  PPPWVKPFVDPPKVLLPSSTPKPVSPSPSAPPRPSS 127

The matrix protein, p15, is encoded by the gag gene. MA is involved in pathogenicity. Length = 129

>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 28/106 (26%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 23  TLILHSSLHYEVAAGDVVAETRRQELEIIIGGG-------GYGPAPAPEYCPPPPPPPEP 75
           T++  +    E   G +   T RQEL I +  G          P P      PPP    P
Sbjct: 14  TMLAKARRTPE---GTLAYITDRQELYIRVRNGWRKVLLGELVPLPGTTATQPPPVVLTP 70

Query: 76  ICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPF 121
              P  P  P  P P          P PP   P R       F P 
Sbjct: 71  WSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSPARIAHVHQDFQPV 116

NC10 stands for Non-helical region 10 and is taken from human COL15A1. A mutation in this region in human COL18A1 is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor. Endostatin also binds a zinc ion near the N-terminus; this is likely to be of structural rather than functional importance according to. Length = 291

>gnl|CDD|221518 pfam12301, CD99L2, CD99 antigen like protein 2

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 13/55 (23%), Positives = 14/55 (25%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPF 121
            P   P  P  P     +                P P P P P P  P    G F
Sbjct: 14  KPTKKPATPKKPSKGDDDFDLEDALDGGNDGGAGPKPKPRPQPDPGNPGGDGGGF 68

This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum. Length = 154

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 226 FLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKF 284
           F+  L + N  L G  P ++  +++L  ++L  NS  G +P  +  +  L+VL L+ N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 285 SQNLPENIGSTGALYVTFAN-NEFTGPIPSSIG 316
           + ++PE++G   +L +   N N  +G +P+++G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 18/65 (27%), Positives = 20/65 (30%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  +PE     P  P    PP  PP    P PP    P       P P P R     +  
Sbjct: 175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGA 234

Query: 119 GPFAS 123
               S
Sbjct: 235 SSSDS 239

Length = 1352

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 17/74 (22%), Positives = 19/74 (25%), Gaps = 7/74 (9%)

Query: 58  GPAPAPEYCPPPPPPPEP-------ICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           G   A   C P  P   P         P  P P P     P   P P     PP    P 
Sbjct: 178 GEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPA 237

Query: 111 PPKPPSPFGPFASE 124
           P    +      + 
Sbjct: 238 PSTTIAAPQAGTTP 251

Length = 401

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 54  GGGYGPAPAPEY-CPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                 +    +   PP   P    PPPPPP     PPPPPPP              R  
Sbjct: 159 DESVPSSSTTSFPISPPTEEPVLEVPPPPPP-----PPPPPPPSLQQSTSAIDLIKERKG 213

Query: 113 KPPS 116
           +  +
Sbjct: 214 QRSA 217

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 63  PEYCPPPPPPPEPICPPPPPPEPICPPPP-PPPPPPPPPPPPPPPPPPRPPKPPSPFGPF 121
            +Y  PP  P     PPP            P   P  P   PP  P P       P+   
Sbjct: 151 QQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGA 210

Query: 122 AS 123
             
Sbjct: 211 PP 212

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236511 PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 15/51 (29%)

Query: 81  PPPEPIC---PPPPP------------PPPPPPPPPPPPPPPPPRPPKPPS 116
           P   P C    PPPP              P  PP P   P P P PP PP+
Sbjct: 217 PAGSPECEDQAPPPPGDGCGAELASWSDAPFEPPKPTTKPKPKPPPPLPPA 267

Length = 275

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 19/76 (25%), Gaps = 4/76 (5%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPP---PPPPPPPPPPPRP-PKPPSPFGPFASER 125
           PP   P   P P P P   P       P        P         P+ PS   P +   
Sbjct: 86  PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSD 145

Query: 126 IQLAFKVIQRFKKRIT 141
                 V    +  I 
Sbjct: 146 AASTLVVGSERETTIE 161

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 81  PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS------ERIQLA 129
            P  P+  P  P  P   P P   P  P  PP PP+  G          +RI++A
Sbjct: 87  EPASPLKVPEMPTGPASAPLPIARPDNPDAPPTPPANPGNPGQVNDDEAQRIRMA 141

Length = 472

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 17/69 (24%), Positives = 18/69 (26%), Gaps = 2/69 (2%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP--PPPPPRPPKPPS 116
           PA A           E    PP        P    PP     P P    P    P   P 
Sbjct: 450 PAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPD 509

Query: 117 PFGPFASER 125
              P A+ R
Sbjct: 510 ARAPAAASR 518

Length = 830

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 16/32 (50%), Positives = 16/32 (50%)

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
           P PPPPPP      P P  PP PP P  P A 
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAP 72

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
             PPP   +   P P           PPP  PPPP  P PP   P PP P   + ++
Sbjct: 46  YYPPPGAYVHLEPLPAYG----QYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMAD 98

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 19/97 (19%), Positives = 22/97 (22%), Gaps = 24/97 (24%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPIC-------PPP-----------------PP 92
             PA A      PP  P            +        P P                 P 
Sbjct: 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449

Query: 93  PPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
           P P P   P     P    P+P +     A  R   A
Sbjct: 450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486

Length = 700

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 8e-04
 Identities = 10/59 (16%), Positives = 10/59 (16%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            AP      PPPP   P   P  P                            P      
Sbjct: 391 VAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449

Length = 647

>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP)

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 7/67 (10%)

Query: 58  GPAPAP-EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP---- 112
           G AP                    PP  P  P P     P  P  P   P PP PP    
Sbjct: 4   GAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRATD 63

Query: 113 --KPPSP 117
             + P P
Sbjct: 64  GDRDPQP 70

This entry represents proteins encoded by genes which are always found in type III secretion operons, although their function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. see also PMID:18584024. Length = 185

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 18/65 (27%), Gaps = 6/65 (9%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPIC------PPPPPPPPPPPPPPPPPPPPPPRPP 112
           P    E   P P P E          P          PP P PPPP  P P      R  
Sbjct: 148 PPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRS 207

Query: 113 KPPSP 117
           +    
Sbjct: 208 RIKRT 212

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               PPP   PP PP   PPPR  +PP+ 
Sbjct: 910 AASAPPPGAGPPAPPQAVPPPRTTQPPAA 938

Length = 991

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 8/73 (10%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPP--------PPPPPPPPPPPPPPPPPPPPR 110
           P  AP    PP  PP     P        PP        PP   P    PP   P     
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756

Query: 111 PPKPPSPFGPFAS 123
           P   P    P A+
Sbjct: 757 PAAAPGRARPPAA 769

Length = 991

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 12/43 (27%), Positives = 12/43 (27%), Gaps = 5/43 (11%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPP 101
            A A  Y PP P P      P     P         P   P P
Sbjct: 52  AASAQAYAPPAPAP-----LPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 6/83 (7%)

Query: 42  ETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPP 101
           +  ++ + I++G          E      P  EP      P         PP    P   
Sbjct: 214 DFAKELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKE 273

Query: 102 PPPPPPPPRPPKPPSPFGPFASE 124
             P          P+ F  F   
Sbjct: 274 AQP------VNVQPAQFQSFDPP 290

Length = 382

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 14/59 (23%), Positives = 16/59 (27%), Gaps = 1/59 (1%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
                 EP        +PI    P P P       P  P PP   +     GP   E  
Sbjct: 108 KVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPP-SYEETIKPGPAPVEEP 165

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 17/82 (20%), Positives = 24/82 (29%)

Query: 44  RRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP 103
            +Q ++ +       P P+      P P        P  P+    P   PP     PP  
Sbjct: 375 PKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA 434

Query: 104 PPPPPPRPPKPPSPFGPFASER 125
            P  PP           F  E+
Sbjct: 435 VPVNPPSTAPQAVRPAQFKEEK 456

Length = 614

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 20/75 (26%), Positives = 23/75 (30%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
              G A  P   P    PP        PP        PP   P    PP   P    P+P
Sbjct: 719 AATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQP 778

Query: 115 PSPFGPFASERIQLA 129
           P    P   +R + A
Sbjct: 779 PPQAPPAPQQRPRGA 793

Length = 991

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 15/32 (46%), Positives = 15/32 (46%)

Query: 81  PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            PPE   P  P P P  P   P PPPPP   P
Sbjct: 286 LPPEDGRPLRPAPAPARPVAAPAPPPPPDDTP 317

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 19/76 (25%), Positives = 19/76 (25%), Gaps = 17/76 (22%)

Query: 59   PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPP----------------- 101
                P    P PPPP P  P PP      P     P    P P                 
Sbjct: 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979

Query: 102  PPPPPPPPRPPKPPSP 117
            P P P    P     P
Sbjct: 2980 PQPAPSREAPASSTPP 2995

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 13/57 (22%), Positives = 14/57 (24%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
               P  AP        P      P    E + P P   P P       P   P  P
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 14/37 (37%), Positives = 14/37 (37%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPP 95
           P P  E  PPPPPPPE    PP   E           
Sbjct: 262 PQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298

Length = 584

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 6/65 (9%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPP--EPICPPPPPPPPP-PPPPPPPPP---PPPPRPP 112
            AP P    P P       P P  P  +P+ P   P P P    P P      P  P   
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176

Query: 113 KPPSP 117
             P P
Sbjct: 177 PQPEP 181

Length = 333

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 63 PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPP 95
          P   PPPP       PPPP  EP   PPPPPPP
Sbjct: 5  PPGNPPPP-------PPPPGFEPPSQPPPPPPP 30

Length = 2365

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 40.6 bits (94), Expect = 0.001
 Identities = 20/51 (39%), Positives = 20/51 (39%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P  P P C  P P  P C P  P P    P P P  PP   P  PP    P
Sbjct: 81  PLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCP 131

Length = 280

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 10/66 (15%), Positives = 12/66 (18%), Gaps = 5/66 (7%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP-----PPPPPPRPPKPPSPFGPF 121
                 P      P  P     P      P    P       P         P     P 
Sbjct: 395 GGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQ 454

Query: 122 ASERIQ 127
            + R+ 
Sbjct: 455 PAVRLN 460

Length = 598

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP-PKPPSPFGP 120
           P  P  P+P+ P    P+P+ P P  P P  P  P P  P P  P P  P P  P
Sbjct: 560 PDEPIIPDPVDP--VIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDP 612

Length = 955

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 19/57 (33%), Positives = 19/57 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
            A A     P   PP    P   P     P P  PP  PP    P  P P   PKP 
Sbjct: 84  AAAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPV 140

Length = 226

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 17/77 (22%), Positives = 18/77 (23%), Gaps = 7/77 (9%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPE----PICPPPPPPPPPPPPP---PPPPPP 106
           GG      A    P P P            E       P         P P   P P  P
Sbjct: 343 GGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGP 402

Query: 107 PPPRPPKPPSPFGPFAS 123
           P P P +        A 
Sbjct: 403 PAPEPARSAEAPPLVAP 419

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 15/66 (22%), Positives = 17/66 (25%), Gaps = 1/66 (1%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
              P         P P    P P  PP P P      PP   P             +  A
Sbjct: 378 RSAPTAAATAAGAPLPD-FDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAA 436

Query: 130 FKVIQR 135
            K+  R
Sbjct: 437 LKMQLR 442

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 12/43 (27%), Positives = 12/43 (27%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
           P           P   P P  PP P P      PP   P   P
Sbjct: 381 PTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 88  PPPPPPPPPPPPPPPPP 104
           P  PPPPPPPPPP  P 
Sbjct: 230 PSAPPPPPPPPPPSVPT 246

Length = 313

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 13/24 (54%), Positives = 13/24 (54%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRPP 112
           P      P  PPPPPPPPPP  P 
Sbjct: 223 PAVSSSAPSAPPPPPPPPPPSVPT 246

Length = 313

>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 9/32 (28%), Positives = 10/32 (31%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           PPPP +    P      P        P  P R
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASPWR 400

Length = 509

>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPK 113
           P P P P P PPPP P P P P   +
Sbjct: 5   PGPKPGPTPTPPPPAPTPEPTPAKHE 30

This family consists mainly of the potato leaf roll virus readthrough protein. This is generated via a readthrough of open reading frame 3 a coat protein allowing transcription of open reading frame 5 to give an extended coat protein with a large c-terminal addition or read through domain. The readthrough protein is thought to play a role in the circulative aphid transmission of potato leaf roll virus. Also in the family is open reading frame 6 from beet western yellows virus and potato leaf roll virus both luteovirus and an unknown protein from cucurbit aphid-borne yellows virus a closterovirus. Length = 460

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 12/59 (20%), Positives = 14/59 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                   P    PP+    P P         P   P    P        P    PP+P
Sbjct: 472 ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530

Length = 830

>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 89  PPPPPPPPPPPPPPPPPPPPPRP 111
           PPPPPPPPP    P PP   P P
Sbjct: 119 PPPPPPPPPARAEPAPPVARPAP 141

Length = 248

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 12/54 (22%), Positives = 13/54 (24%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P   P P    P    P    P P   P       P P     + P       P
Sbjct: 196 PATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAP 249

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|179538 PRK03100, PRK03100, sec-independent translocase; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 11/37 (29%), Positives = 11/37 (29%), Gaps = 2/37 (5%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPP--SPFGPFA 122
                 P P  P    P PP   P  P    PF   A
Sbjct: 99  QTGNGRPTPSSPDAAGPAPPDATPLAPGERPPFDSDA 135

Length = 136

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
               P+  P   P   P+   PP P+  C  P    P  P  P     P P  P PP P 
Sbjct: 383 RPQRPDGIPYSVPARSPMTAYPPVPQ-FCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPT 441

Query: 119 GPFASER 125
            P+    
Sbjct: 442 NPYVMPI 448

Length = 663

>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 20/101 (19%)

Query: 35  AAGDVVAETRRQEL----EIIIGGG---------GYGPAPAPEYCPPPPPPPEPICPPPP 81
           A+G +V++T R+ L    ++I+ G            G     E  P PP         P 
Sbjct: 14  ASGSLVSDTHRRRLSGSQKLIVAGLVLALSLSLIWLGGRSKKENEPAPPSTMIATNTKPF 73

Query: 82  PPEPICPPPPPPPPPPPPPPPPPPPPP-------PRPPKPP 115
            P PI  PP PP       P  PP          PRP + P
Sbjct: 74  HPAPIDVPPDPPAAQEAVQPTAPPSAQSEPERNEPRPEETP 114

Length = 376

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 20/74 (27%), Positives = 21/74 (28%)

Query: 45  RQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP 104
            +      GG   G        PP P        PP       P   P P P P P    
Sbjct: 854 SKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKL 913

Query: 105 PPPPPRPPKPPSPF 118
            P PP  P P   F
Sbjct: 914 GPMPPGGPDPRGGF 927

Length = 1352

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/65 (30%), Positives = 24/65 (36%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P P      P P +    P P P+P   P P   P P P  PP       P  P  P 
Sbjct: 77  PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPA 136

Query: 119 GPFAS 123
            P ++
Sbjct: 137 RPPSA 141

Length = 244

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 9/40 (22%), Positives = 10/40 (25%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P    P P               P      P  PP PP+ 
Sbjct: 272 PATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPAT 311

Length = 656

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 13/38 (34%), Positives = 13/38 (34%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPP 96
           P   PE  PPPPPPP      PP  E            
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298

Length = 584

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 15/72 (20%), Positives = 15/72 (20%), Gaps = 5/72 (6%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICP-----PPPPPPPPPPPPPPPPPPPPPRPPK 113
             P     PPPP       P  P PE                         P    R   
Sbjct: 392 APPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARP 451

Query: 114 PPSPFGPFASER 125
             S     AS R
Sbjct: 452 VNSALERLASVR 463

Length = 647

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 16/80 (20%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPP----------------PPPEPICPPPPPPPPPPPPP 100
           +G AP PE  PP  P  +P    P                    P  P PP    P   P
Sbjct: 126 WGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMP 185

Query: 101 PPPPPPPPPRPPKPPSPFGP 120
           P     P   PP+ P  +  
Sbjct: 186 PRQAAFPQQGPPEQPPGYPQ 205

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 22/56 (39%), Positives = 22/56 (39%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
             Y P P      PPP P     P   PP P   PPP   P PP P   P  P PR
Sbjct: 74  SNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNYPYPPGPGQDPYAPRPR 129

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           P   P   P P P   P   PPPP     PPP   P PP P   P  P P R 
Sbjct: 81  PGSTPVPPPGPQPGYNPADYPPPPGAV--PPPQNYPYPPGPGQDPYAPRPRRA 131

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 40.2 bits (93), Expect = 0.002
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 7/46 (15%)

Query: 82  PPEPICP-------PPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P  P  P       P P P P P   PP  P P    P  P P   
Sbjct: 94  PAMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIPDAV 139

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 4/27 (14%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPP 104
           P  P P    PP P PP P PPP  PP
Sbjct: 1   PAAPVP----PPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 17/62 (27%), Positives = 19/62 (30%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           PA  P+   P PPP  P       P         PPP     P      P   P  P  +
Sbjct: 132 PAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSY 191

Query: 119 GP 120
            P
Sbjct: 192 PP 193

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 13/42 (30%), Positives = 14/42 (33%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           P PPP  P   PP PP  P      P      + P    P  
Sbjct: 92  PRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGP 133

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 12/26 (46%), Positives = 12/26 (46%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPK 113
           P      P  PPPPPPPPPP      
Sbjct: 223 PAVSSSAPSAPPPPPPPPPPSVPTIS 248

Length = 313

>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 12/90 (13%)

Query: 31  HYEVAAGDVVAE---TRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPIC 87
           H  V  G V  E   TRR      +G    GPA  P    P   P +   P P       
Sbjct: 144 HTPVPPGCVNFEYSRTRR-----CVGRRTPGPANEPRTRRPLSAPDDEASPQPKSLAT-- 196

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             PPP   P    P P   P     +P  P
Sbjct: 197 --PPPVAAPSRRTPRPRRKPRGNRTRPSRP 224

Length = 226

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 20/69 (28%), Positives = 21/69 (30%), Gaps = 7/69 (10%)

Query: 56  GYGPAPAPEYCPPPPPP-------PEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
           GY P PAP    P PP        PEP       P          P P          P 
Sbjct: 263 GYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPK 322

Query: 109 PRPPKPPSP 117
           P PP+P   
Sbjct: 323 PGPPRPAPD 331

Length = 416

>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 7/50 (14%), Positives = 7/50 (14%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
                P E         E       PP         P            S
Sbjct: 226 TAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275

Length = 670

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 9/44 (20%)

Query: 83  PEPICPPPPPPPPP---------PPPPPPPPPPPPPRPPKPPSP 117
           P P+  PP   PPP          P  P PP  PPP P   P  
Sbjct: 162 PRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 10/44 (22%)

Query: 81  PPPEPICPPPPPPP----------PPPPPPPPPPPPPPPRPPKP 114
           P P P  P   PPP          P  P PP  PPP P   P  
Sbjct: 162 PRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIA 205

Length = 540

>gnl|CDD|179538 PRK03100, PRK03100, sec-independent translocase; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 10/32 (31%), Positives = 10/32 (31%)

Query: 81  PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                   P  P    P PP   P  P  RPP
Sbjct: 99  QTGNGRPTPSSPDAAGPAPPDATPLAPGERPP 130

Length = 136

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 59  PAPAPEYCPPPPP-----PPEPICPPPPPPEPICPPPPPPPPPPPPPPP----PPPPPPP 109
             PA    P  P       P        PP P     P    P  P  P     P P  P
Sbjct: 376 TGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGP 435

Query: 110 RPPKPPSP 117
            PP+P +P
Sbjct: 436 VPPQPTNP 443

Length = 663

>gnl|CDD|217197 pfam02711, Pap_E4, E4 protein

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 91  PPPPPPPPPPPPPPPPPPPRPPKP 114
                PP PPPPPPP  P +  + 
Sbjct: 17  HTYTTPPRPPPPPPPWAPKKRCRR 40

This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known. Length = 95

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 22/91 (24%), Positives = 31/91 (34%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           APAPE  P      +P      P +    P  P   P    P   P   P P +P     
Sbjct: 374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPY 433

Query: 120 PFASERIQLAFKVIQRFKKRITYDPQGIANT 150
              +    +A    Q  +++ T+ PQ    T
Sbjct: 434 YAPAPEQPVAGNAWQAEEQQSTFAPQSTYQT 464

Length = 1355

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 4/40 (10%), Positives = 5/40 (12%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP 106
                           P P+      P            P
Sbjct: 52  AEASAAAAQAPYQVATPTPVQSQRVDPAAASGQDSTEARP 91

Length = 92

>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPP--------PPPPPPPPPPPRPPKPPSPFG 119
           P  P  +P+ PP P P  + P  P  PP  P        P PP        PP PP+ +G
Sbjct: 125 PALPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPPFPPNQYG 184

Arsenite is a carcinogenic compound which can act as a co-mutagen by inhibiting DNA repair. Arsenite-resistance protein 2 is thought to play a role in arsenite resistance. Length = 211

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 16/45 (35%), Positives = 17/45 (37%)

Query: 71  PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
              + I    PP       PP PP P  PP PPP P     P  P
Sbjct: 48  GEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLP 92

Length = 360

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK----PP 115
           +      P  P  PE +  P  P  P  P  P  PPPP  P  P  P  P+  K    P 
Sbjct: 602 SAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPK 661

Query: 116 SPFGPF 121
           SP  PF
Sbjct: 662 SPKPPF 667

Length = 943

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 16/76 (21%), Positives = 18/76 (23%), Gaps = 11/76 (14%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP---------PPPP 109
                +          P     P      P  PP   P  P  P PP           PP
Sbjct: 157 EDEDADVATTNSDNSFPGEDADPASAS--PSDPPSSSPGVPSFPSPPEDPSSPSDSSLPP 214

Query: 110 RPPKPPSPFGPFASER 125
            P    S   P + E 
Sbjct: 215 APSSFQSDTPPPSPES 230

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 8/56 (14%)

Query: 70  PPPPEPIC--------PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P P +PI           PP      P P   P P P P P PP   P     P P
Sbjct: 42  PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEP 97

Length = 246

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 14/76 (18%), Positives = 15/76 (19%), Gaps = 2/76 (2%)

Query: 47  ELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP 106
               +                P  P         P       PP      PPPP  P   
Sbjct: 661 GPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAA 720

Query: 107 PPPRPP--KPPSPFGP 120
            P         SP  P
Sbjct: 721 GPAPCGSSLIASPTAP 736

Length = 753

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 19/71 (26%), Positives = 24/71 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P+    PP    P P      P     P     P PP P     PP    P    S +
Sbjct: 222 PTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRY 281

Query: 119 GPFASERIQLA 129
               ++ IQ+A
Sbjct: 282 ELTVTQIIQIA 292

Length = 401

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 8/43 (18%), Positives = 9/43 (20%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
             P          P       P P P     P    P +   P
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAP 239

Length = 547

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP--------PPPPPPR 110
           P+  P+  P P PP +P       P+P  P    P      P PP        P      
Sbjct: 230 PSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHP 289

Query: 111 PPKPPSPFG 119
              PP PFG
Sbjct: 290 SSNPPQPFG 298

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 322 LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF 379
           L+ L L NN  T         L N  V D+  N LT   P +F  L S++ L+L+ N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 12/41 (29%), Positives = 14/41 (34%)

Query: 84  EPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
           +P     P  P   P PPPP      +P   P P     S 
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSA 241

Length = 539

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 12/24 (50%), Positives = 12/24 (50%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPP 102
           P         PPPPPPPPPP  P 
Sbjct: 223 PAVSSSAPSAPPPPPPPPPPSVPT 246

Length = 313

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 9/42 (21%), Positives = 10/42 (23%)

Query: 81  PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFA 122
                        PP P P P     P P      +P    A
Sbjct: 47  DLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPA 88

Length = 767

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 79  PPPPPEPICPPPPP---------PPPPPPPPPPPPPPPPPRP 111
           P P P P    PPP          P  P PP  PPP P P P
Sbjct: 162 PRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHP 203

Length = 540

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 16/76 (21%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP-----PPP 108
           G     A  P   P   P P         P P         PP               PP
Sbjct: 568 GARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627

Query: 109 PRPPKPPSPFGPFASE 124
           P    PP  + P +++
Sbjct: 628 PWEDIPPDDYVPLSAD 643

Length = 830

>gnl|CDD|217197 pfam02711, Pap_E4, E4 protein

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 11/25 (44%), Positives = 11/25 (44%)

Query: 87  CPPPPPPPPPPPPPPPPPPPPPPRP 111
                 PP PPPPPPP  P    R 
Sbjct: 16  LHTYTTPPRPPPPPPPWAPKKRCRR 40

This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known. Length = 95

>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 5/40 (12%), Positives = 6/40 (15%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                     P     P P       P     +      P
Sbjct: 52  AEASAAAAQAPYQVATPTPVQSQRVDPAAASGQDSTEARP 91

Length = 92

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 15/51 (29%), Positives = 16/51 (31%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           A   E        P        PP P  P  PP PPP P     P  P  +
Sbjct: 45  ALQGEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQ 95

Length = 360

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
               PP  +    PP  P   P  PP PPP P     P  P +  + 
Sbjct: 54  NNTQPPSNVERGTPPLPP--LPDDPPLPPPLPVDLGAPVLPDQQVEE 98

Length = 360

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 72  PPEPICPPPPPPEPICPPPP--PPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
             +       PP  +    P  PP P  PP PPP P     P  P      
Sbjct: 48  GEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEE 98

Length = 360

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 53  GGGGYGPAPAPEYCP-PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           G   Y     P     PP  P +   P   P  P     P P   P              
Sbjct: 114 GRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLG 173

Query: 112 PKPPSPFGPFASE 124
             P +P+   AS 
Sbjct: 174 FPPRAPYASPASY 186

Length = 617

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 10/96 (10%), Positives = 18/96 (18%), Gaps = 12/96 (12%)

Query: 44  RRQELEIIIGGGGYGPAPAPEYCPPP------------PPPPEPICPPPPPPEPICPPPP 91
            +              APA E  P                      P  P  +    P  
Sbjct: 62  AQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAE 121

Query: 92  PPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
                               P+ P+      ++ ++
Sbjct: 122 RAAAENAARRLARAAAAAPRPRVPADAAAAVADAVK 157

Length = 484

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 87  CPPPPPPPPPPPPPPPPPPPPPPRPPK--PPSPFGPFA 122
               P PP  P PP P PP  P   P+  PPSP GP A
Sbjct: 5   RSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGA 42

Length = 318

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEP-ICPPPPPPPPPPPPPPPPPPPPPPR 110
            +P+P   P  P PP P  P  P   P   PP PP P   PPP     P  PR
Sbjct: 7   RSPSP---PRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPR 56

Length = 318

>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366)

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 12/45 (26%), Positives = 13/45 (28%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFA 122
               P    CP           P P P P P   P+  S  GP  
Sbjct: 118 DAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLL 162

This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 227 and 387 amino acids in length. Length = 213

>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 4/83 (4%)

Query: 71  PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE-RIQLA 129
           P P  +                P     PPP  PPP     P    P           L 
Sbjct: 151 PDPRSLTRWVFDRSDTAATKAHPSGVALPPPRAPPPRNTTDPATIKPNDHLNPATTFFLD 210

Query: 130 FKVIQRFKKRITY-DPQGIANTW 151
            +++ R  KR  Y  P   A  W
Sbjct: 211 AELLLRTPKRSVYVSP--FAAVW 231

Length = 835

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 11/63 (17%), Positives = 13/63 (20%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               AP    P      P      P   +  P   P     P         P      +P
Sbjct: 619 AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAP 678

Query: 118 FGP 120
             P
Sbjct: 679 AAP 681

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 18/92 (19%), Positives = 18/92 (19%), Gaps = 18/92 (19%)

Query: 52  IGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP------------------ 93
            G  G    P P      P    P   P  P     P  P                    
Sbjct: 273 SGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS 332

Query: 94  PPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
                     P P P R P P  P  P     
Sbjct: 333 SESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364

Length = 1352

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 19/60 (31%), Positives = 22/60 (36%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P     P  P P +    P    +P  P P   P  P P  PP P  P +P  P  P  P
Sbjct: 66  PVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPP 125

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 17/45 (37%), Positives = 17/45 (37%)

Query: 80  PPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
             PPE   P  PPP   P PP    PPP       P P  P A  
Sbjct: 29  FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPP 73

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 12/69 (17%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPP------------PPPPP 105
           GP P+     P  PP       PP            P PP PP             P  P
Sbjct: 466 GPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525

Query: 106 PPPPRPPKP 114
           PPPPR P P
Sbjct: 526 PPPPRSPSP 534

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 11/38 (28%), Positives = 12/38 (31%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
                 E +  P P P P  P  P P  P  P P    
Sbjct: 44  DLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPAS 81

Length = 153

>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 4/61 (6%)

Query: 51  IIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           I G    G          P   PE    P   P PI  P  P  PP PP  P  P     
Sbjct: 77  IAGDQTGGLIEPAS----PLKVPEMPTGPASAPLPIARPDNPDAPPTPPANPGNPGQVND 132

Query: 111 P 111
            
Sbjct: 133 D 133

Length = 472

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 12/28 (42%), Positives = 12/28 (42%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPP 106
            PP       P P P  P   P PPPPP
Sbjct: 286 LPPEDGRPLRPAPAPARPVAAPAPPPPP 313

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 15/33 (45%), Positives = 16/33 (48%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
            PP    P+ P P P  P   P PPPPP   PR
Sbjct: 286 LPPEDGRPLRPAPAPARPVAAPAPPPPPDDTPR 318

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 92  PPPPPPPPPPPPPPPPPPRPPKP 114
           PPPPPPPPP    P PP   P P
Sbjct: 119 PPPPPPPPPARAEPAPPVARPAP 141

Length = 248

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 22/79 (27%), Positives = 28/79 (35%)

Query: 49  EIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
           E +I     G     +Y  P     EP+  P  P +P   P    P   P   P P  P 
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429

Query: 109 PRPPKPPSPFGPFASERIQ 127
            +P   P+P  P A    Q
Sbjct: 430 QQPYYAPAPEQPVAGNAWQ 448

Length = 1355

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 86  ICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
           + PP    P    PPP   P    RP  P +   P+  E  +  
Sbjct: 51  LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL 94

Length = 484

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 16/64 (25%), Positives = 18/64 (28%), Gaps = 10/64 (15%)

Query: 66  CPPPPPPPEPICPPPPPPEP------ICPPPPPPPPPPPPPPPPPPPPPP---RPPKP-P 115
               P        P P   P          P PPPP         P P P    P +P  
Sbjct: 10  SKSSPKTSVQEDTPTPTVYPDWSAMQAYYGPRPPPPYFNSSVASSPQPHPYMWGPQQPMM 69

Query: 116 SPFG 119
            P+G
Sbjct: 70  PPYG 73

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 74  EPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           E I  P         P  P   P P P    P    + P+P +  G
Sbjct: 19  EEIGAPAQAA----APAQPASTPVPVPTEASPQVEAQAPQPAAAAG 60

Length = 130

>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory factor

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 14/72 (19%), Positives = 15/72 (20%), Gaps = 8/72 (11%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEP----ICPPPPPPPPPPPPP----PPPPPPPPP 109
            P        P PP      P    P P      PP     P    P             
Sbjct: 309 RPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFERPLALSPKRKREGDKKQKKK 368

Query: 110 RPPKPPSPFGPF 121
           +  K    F P 
Sbjct: 369 KSKKLKLTFNPL 380

Replicative DNA polymerases are capable of polymerising tens of thousands of nucleotides without dissociating from their DNA templates. The high processivity of these polymerases is dependent upon accessory proteins that bind to the catalytic subunit of the polymerase or to the substrate. The Epstein-Barr virus (EBV) BMRF1 protein is an essential component of the viral DNA polymerase and is absolutely required for lytic virus replication. BMRF1 is also a transactivator. This family is predicted to have a UL42 like structure. Length = 381

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
PLN03150	623	hypothetical protein; Provisional	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PLN03150	623	hypothetical protein; Provisional	99.05
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG4341	483	consensus F-box protein containing LRR [General fu	95.91
KOG4308	478	consensus LRR-containing protein [Function unknown	95.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.77
KOG4308	478	consensus LRR-containing protein [Function unknown	95.75
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.28
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.7
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	90.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.7
smart00370	26	LRR Leucine-rich repeats, outliers.	89.7
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	89.65
smart00370	26	LRR Leucine-rich repeats, outliers.	88.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.4
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.62
PF12238	205	MSA-2c: Merozoite surface antigen 2c; InterPro: IP	83.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.58

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-34  Score=327.15  Aligned_cols=288  Identities=32%  Similarity=0.515  Sum_probs=181.3

Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEE
Q 011101          128 LAFKVIQRFKKRITYDPQGIANTWM-GPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIF  206 (493)
Q Consensus       128 ~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L  206 (493)
                      .++.++..|++.+. ++.+...+|. ..++| .|.||.|+..     .+++.|||++|++++   .++..+..+++|+.|
T Consensus        29 ~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c-~w~gv~c~~~-----~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L   98 (968)
T PLN00113         29 EELELLLSFKSSIN-DPLKYLSNWNSSADVC-LWQGITCNNS-----SRVVSIDLSGKNISG---KISSAIFRLPYIQTI   98 (968)
T ss_pred             HHHHHHHHHHHhCC-CCcccCCCCCCCCCCC-cCcceecCCC-----CcEEEEEecCCCccc---cCChHHhCCCCCCEE
Confidence            56789999999994 7777889998 45666 9999999742     468888888888888   677788888888888


Q ss_pred             EccCCcCCCccCcccC-CCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccC
Q 011101          207 HANSNNFTKSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKF  284 (493)
Q Consensus       207 ~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l  284 (493)
                      +|++|++++.+|..+. .+++|++|+|++|.+++.+|.  ..+++|++|+|++|.+.+.+|..+... +|++|+|++|.+
T Consensus        99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            8888888877776544 777777777777777655553  345556666666666655555555444 566666666655


Q ss_pred             CCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccc
Q 011101          285 SQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF  363 (493)
Q Consensus       285 ~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  363 (493)
                      .+.+|..++++..+ +|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+
T Consensus       177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  256 (968)
T PLN00113        177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL  256 (968)
T ss_pred             cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence            55555555555555 55555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-ccccCCCCCCEEEeeCCcCC
Q 011101          364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG-PECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       364 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~L~~N~l~  427 (493)
                      ..+++|++|+|++|++++.+|..+..+.+|+.|+|++|++++.. ..+..+++|+.|++++|.++
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            55555555555555555555555555555555555555554432 23344444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.6e-29  Score=286.87  Aligned_cols=251  Identities=24%  Similarity=0.409  Sum_probs=106.8

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|+|++|.+.+   .+|..++.+++|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..+.++++|++
T Consensus       140 ~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        140 PNLETLDLSNNMLSG---EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCCEEECcCCcccc---cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            344444444444444   34444444444444444444444444444444444444444444444444444444444444


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhc------------------------ccCcC
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTF------------------------ANNEF  307 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l------------------------~~n~l  307 (493)
                      |+|++|.+.+.+|..+... +|++|++++|.+.+.+|..+++++.+ +|++                        ++|.+
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            4444444444444433333 44444444444444444444443333 3444                        44444


Q ss_pred             CCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh
Q 011101          308 TGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV  387 (493)
Q Consensus       308 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  387 (493)
                      .+.+|..+.++++|+.|++++|.+.+.++..+..+++|+.|++++|.+++.+|..+..+.+|+.|+|++|++++.+|.++
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence            43444444444444444444444443333334444444444444444444444444444444444444444433333333


Q ss_pred             cCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCC
Q 011101          388 CQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       388 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~  427 (493)
                      +.+.+|+.|++++|++.+. +..+..+++|+.|++++|.++
T Consensus       377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            3333333333333333332 123344444555555555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=4.7e-27  Score=233.00  Aligned_cols=256  Identities=22%  Similarity=0.216  Sum_probs=220.6

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      .....+.||+++|.++.   .-..+|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-..++..+..|
T Consensus        76 lp~~t~~LdlsnNkl~~---id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   76 LPSQTQTLDLSNNKLSH---IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL  151 (873)
T ss_pred             Cccceeeeecccccccc---CcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence            34567889999999998   67788999999999999999998 677755666779999999999998888899999999


Q ss_pred             cEEEcccccCCCCCCccccc--cccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcc
Q 011101          252 TFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLN  328 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  328 (493)
                      +.||||.|.|+ .++..-+.  .++++|+|++|+|+...-..|..+..+ .|.|+.|+++..-+..|.++++|+.|+|..
T Consensus       152 rslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  152 RSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            99999999999 66655443  399999999999998777888888777 999999999977777888899999999999


Q ss_pred             ccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-
Q 011101          329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG-  407 (493)
Q Consensus       329 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-  407 (493)
                      |++.-.--..|.++.+|+.|.|..|+|...-...|..+.++++|+|+.|+++..-..++.++++|+.|+||+|.|..+. 
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            9998443567888999999999999998666677888899999999999998777788889999999999999999874 


Q ss_pred             ccccCCCCCCEEEeeCCcCCCCCCC
Q 011101          408 PECRKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       408 ~~~~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      ..+....+|++|+|++|+|+.++++
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             chhhhcccceeEeccccccccCChh
Confidence            4677788899999999999998764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=3.8e-28  Score=240.68  Aligned_cols=288  Identities=19%  Similarity=0.164  Sum_probs=196.1

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .++++|+|++|+|+.   .--..|..+.+|..|.|+.|+|+..-+..|.+|++|+.|+|..|+|...-.-.|.+|.+|+.
T Consensus       173 ~ni~~L~La~N~It~---l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n  249 (873)
T KOG4194|consen  173 VNIKKLNLASNRITT---LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN  249 (873)
T ss_pred             CCceEEeeccccccc---cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence            356667777776666   44556666666777777777776554455666777777777777664333455666777777


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      |.|..|.+...-...|+.. ++++|+|..|++...--.++.+++.+ .|++++|.+...-.+++...++|++|+|++|++
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            7777777663323333333 77777777777776555666667766 777788877777777777777778888888877


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcc---hhhcCCCCCcEEeeeCCcCCCCCc
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP---EIVCQLPKLVNLSLSYNYFTQVGP  408 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~~  408 (493)
                      +..-+..|..+..|++|+|++|.++..--..|..+++|+.|||++|.|+..+.   ..|.+|++|+.|+|.+|+|..++.
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k  409 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK  409 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence            76666777777778888888887775555667777888888888887765442   346678888888888888888765


Q ss_pred             -cccCCCCCCEEEeeCCcCCCC-CCCCCchhh--cccccCCCCCCC-------------CCCCcccCCCCCCC
Q 011101          409 -ECRKLIKRKVLDVRMNCILDL-PNQRSREEC--GKFFSESKKCPN-------------ERSLTLVPCARNRS  464 (493)
Q Consensus       409 -~~~~l~~L~~L~L~~N~l~~l-p~~~~~~~~--~~~~~~~~~c~~-------------~~~~~~~~C~~~~~  464 (493)
                       +|..+.+|++|||.+|.|.++ ++.|...+.  +.+.+....|.+             ++......|++...
T Consensus       410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~  482 (873)
T KOG4194|consen  410 RAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEP  482 (873)
T ss_pred             hhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcc
Confidence             788888888888888888877 444544432  334444555653             35556667765543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=1.1e-27  Score=238.76  Aligned_cols=255  Identities=24%  Similarity=0.325  Sum_probs=177.3

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCC-CCCcccccCCCCC
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF-GGFPMEVVNIKNL  251 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L  251 (493)
                      +++++.|.|...++..    +|+.++.+.+|++|.+++|++.. +-..++.++.|+.+++..|++. .-+|..+..+..|
T Consensus        31 Mt~~~WLkLnrt~L~~----vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL  105 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQ----VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL  105 (1255)
T ss_pred             hhheeEEEechhhhhh----ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence            4567777777777765    78888888888888888888873 4466777888888888888774 3467777788888


Q ss_pred             cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcc
Q 011101          252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLN  328 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  328 (493)
                      ..||||+|++. ..|..+... ++-.|+||+|+|. .+|.. +-+++-+ +|||++|++. .+|..+..+..|+.|.|++
T Consensus       106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             eeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence            88888888887 777777665 7888888888887 44443 3455544 8888888877 6666777777788888877


Q ss_pred             cccc-------------------------CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101          329 NFFT-------------------------GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV  383 (493)
Q Consensus       329 n~l~-------------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  383 (493)
                      |.+.                         ..+|.++..+.+|+.+|+|.|.+. .+|+.+..+.+|+.|+||+|+|+ .+
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL  260 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-EL  260 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-ee
Confidence            7543                         134555566667777777777776 66777777777777777777766 33


Q ss_pred             chhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC--CCCCCCCCchh
Q 011101          384 PEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI--LDLPNQRSREE  437 (493)
Q Consensus       384 p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~~~~~~  437 (493)
                      .-......+|++|+||.|+++.+|..+.++++|+.|.+.+|++  .+||+.++.+.
T Consensus       261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            3334445566666666666666666666666666666666644  35665554433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=5.7e-27  Score=233.78  Aligned_cols=251  Identities=25%  Similarity=0.332  Sum_probs=174.8

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcc-cccCCCCC
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPM-EVVNIKNL  251 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L  251 (493)
                      +..++.++++.|++...  .+|..+-+|..|+.|||++|++. ..|..+...+++-.|+||+|+|. .+|. -|.+|+.|
T Consensus        77 Lp~LRsv~~R~N~LKns--GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDL  152 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNS--GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDL  152 (1255)
T ss_pred             chhhHHHhhhccccccC--CCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhH
Confidence            45677778888877643  47888888888888888888887 57777888888888888888885 4454 45688888


Q ss_pred             cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCC-CCCchhhhhhhhhHHHHhcc
Q 011101          252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT-GPIPSSIGRAKYLLEVLFLN  328 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~  328 (493)
                      -+||||+|++. .+|..+..+ .|++|+|++|.+.-..-..+..++.+ .|.+++..-+ ..+|.++..+.+|..++++.
T Consensus       153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            88888888887 666666655 88888888887753333333444444 5566554332 35677777777777777777


Q ss_pred             ccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC--CC
Q 011101          329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT--QV  406 (493)
Q Consensus       329 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~  406 (493)
                      |.+. .+|+.+..+.+|+.|+||+|+|+ .+--......+|++|+||+|+++ .+|..++.+++|+.|.+.+|+++  |+
T Consensus       232 N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  232 NNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             cCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence            7777 67777777777777777777777 44444555667777777777776 66777777777777777777643  45


Q ss_pred             CccccCCCCCCEEEeeCCcCCCCCC
Q 011101          407 GPECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       407 ~~~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      |..++++.+|+++..++|.+.-+|+
T Consensus       309 PSGIGKL~~Levf~aanN~LElVPE  333 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLELVPE  333 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccccCch
Confidence            5556655555555555555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=6.9e-27  Score=222.75  Aligned_cols=248  Identities=26%  Similarity=0.320  Sum_probs=127.1

Q ss_pred             eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      ++.+++++|.+..    +.+.+.++..|++|++++|+++ .+|.+++.+..++.|+.++|+++ .+|..++.+.+|+.|+
T Consensus        47 l~~lils~N~l~~----l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEV----LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhh----ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            3445555555544    4444555555555555555555 34445555555555555555553 4555555555555555


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      +++|.+. .+++.++.. .|+.|+..+|++. ..|.+++++..+ .+++.+|++....+..+. +++|++|+...|.+. 
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence            5555555 344444333 5555555555554 344444444444 555555555533333333 555555555555554 


Q ss_pred             CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhc-CCCCCcEEeeeCCcCCCCCccccC
Q 011101          334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC-QLPKLVNLSLSYNYFTQVGPECRK  412 (493)
Q Consensus       334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~  412 (493)
                      .+|..++.+.+|+.|+|..|+|. .+| .|.++..|++|+++.|+|. .+|...+ .+.+|..|||++|++++.|..+..
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~cl  273 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL  273 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHH
Confidence            45555555555555555555555 444 4455555555555555554 3343333 455555555555555555555555


Q ss_pred             CCCCCEEEeeCCcCCCCCCCCCch
Q 011101          413 LIKRKVLDVRMNCILDLPNQRSRE  436 (493)
Q Consensus       413 l~~L~~L~L~~N~l~~lp~~~~~~  436 (493)
                      +++|..||+++|.|+++|...+++
T Consensus       274 LrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  274 LRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             hhhhhhhcccCCccccCCcccccc
Confidence            555555555555555555544444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=1.6e-25  Score=213.43  Aligned_cols=246  Identities=24%  Similarity=0.321  Sum_probs=222.3

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ....++.|++.+|.+..    +|.+++.+..++.|+.++|+++ .+|..++.+.+|+.|++++|.+. .++++++.+-.|
T Consensus        66 nL~~l~vl~~~~n~l~~----lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQ----LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             cccceeEEEeccchhhh----CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            45568999999999997    8999999999999999999998 68899999999999999999995 788899999999


Q ss_pred             cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101          252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNN  329 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (493)
                      ..|+..+|+++ .+|..++.. +|..|++.+|++....+..+. ++.+ ++|.-.|-++ .+|..++.+.+|+.|++..|
T Consensus       140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence            99999999999 666666655 999999999999855444444 8877 9999999887 89999999999999999999


Q ss_pred             cccCCCcccccCCCCCcEEEecCCCCCCCCccccc-CCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101          330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG-CLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP  408 (493)
Q Consensus       330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  408 (493)
                      ++. .+| .|.++..|++|.++.|+|. .+|.... .+.+|..|||++|+++ ..|..++.+.+|++||+|+|.|++++.
T Consensus       217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence            999 677 8999999999999999999 6776654 8999999999999998 789999999999999999999999999


Q ss_pred             cccCCCCCCEEEeeCCcCCCCCC
Q 011101          409 ECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       409 ~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      +++++ .|+.|-+.+|.+.++-.
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHH
Confidence            99999 99999999999988643

>PLN03210 Resistant to P

Probab=99.81  E-value=4.2e-19  Score=203.15  Aligned_cols=250  Identities=18%  Similarity=0.174  Sum_probs=180.1

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|+++++.+..    ++..+..+++|+.|+|+++.....+| .++.+++|++|+|++|.....+|..+.++++|+
T Consensus       610 ~~~L~~L~L~~s~l~~----L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~  684 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK----LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE  684 (1153)
T ss_pred             ccCCcEEECcCccccc----cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence            4678888888888776    66777888899999998876555666 478888999999988876678888888899999


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhh-----------------
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSI-----------------  315 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l-----------------  315 (493)
                      +|++++|...+.+|..+...+|+.|++++|...+.+|....++  .+|++++|.+. .+|..+                 
T Consensus       685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL--~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNI--SWLDLDETAIE-EFPSNLRLENLDELILCEMKSEK  761 (1153)
T ss_pred             EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCc--CeeecCCCccc-cccccccccccccccccccchhh
Confidence            9999887655577776655588888888886655555432221  15556666544 333221                 


Q ss_pred             -------------hhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCC
Q 011101          316 -------------GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP  382 (493)
Q Consensus       316 -------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  382 (493)
                                   ....+|+.|++++|...+.+|..++++++|+.|+|++|...+.+|..+ .+++|++|+|++|.....
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence                         112467777777777776778888888888888888875444677655 677888888888755444


Q ss_pred             cchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeC-CcCCCCCCCCC
Q 011101          383 VPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRM-NCILDLPNQRS  434 (493)
Q Consensus       383 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~~~  434 (493)
                      +|..   ..+|+.|+|++|.|+.++..+..+++|+.|++++ |.++.+|....
T Consensus       841 ~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~  890 (1153)
T PLN03210        841 FPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS  890 (1153)
T ss_pred             cccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence            4432   3578888888888888877888888888888887 67777775443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.2e-19  Score=193.36  Aligned_cols=225  Identities=23%  Similarity=0.322  Sum_probs=97.0

Q ss_pred             ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101          175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL  254 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  254 (493)
                      +++.|+|++|+++.    +|..+.  .+|+.|++++|+++ .+|..+.  .+|+.|+|++|.+. .+|..+.  .+|++|
T Consensus       200 ~L~~L~Ls~N~Lts----LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L  267 (754)
T PRK15370        200 QITTLILDNNELKS----LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL  267 (754)
T ss_pred             CCcEEEecCCCCCc----CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence            44555555555544    333322  24555555555554 2333221  24555555555553 3333332  345555


Q ss_pred             EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      +|++|+++ .+|..+. .+|+.|+|++|++++ +|..+.. ....|++++|.++. +|..+.  .+|+.|++++|.+++ 
T Consensus       268 ~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp~-sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-  339 (754)
T PRK15370        268 DLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLPS-GITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-  339 (754)
T ss_pred             ECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccchh-hHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-
Confidence            55555554 3443332 245555555555442 2322210 11144455554442 332221  344455555555442 


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccc----
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC----  410 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~----  410 (493)
                      +|..+.  ++|+.|+|++|+|+ .+|..+.  ++|++|+|++|+|+ .+|..+.  .+|+.|++++|+|++++..+    
T Consensus       340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~  411 (754)
T PRK15370        340 LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFR  411 (754)
T ss_pred             CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence            333321  34555555555554 3443332  34555555555554 2333332  23455555555555443322    


Q ss_pred             cCCCCCCEEEeeCCcCC
Q 011101          411 RKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       411 ~~l~~L~~L~L~~N~l~  427 (493)
                      ..++++..|+|.+|.|+
T Consensus       412 ~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        412 GEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hcCCCccEEEeeCCCcc
Confidence            22344455555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.9e-19  Score=193.85  Aligned_cols=230  Identities=21%  Similarity=0.351  Sum_probs=185.9

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+.+.|++++++++.    +|..+.  .+|+.|+|++|+|+ .+|..+.  .+|++|++++|+|+ .+|..+.  .+|+.
T Consensus       178 ~~~~~L~L~~~~Lts----LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~  245 (754)
T PRK15370        178 NNKTELRLKILGLTT----IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQE  245 (754)
T ss_pred             cCceEEEeCCCCcCc----CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccE
Confidence            457889999999987    666553  57999999999999 4666553  58999999999997 5666553  57999


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      |+|++|.+. .+|..+. .+|++|++++|++. .+|..+.. ...+|++++|+++ .+|..+.  .+|+.|++++|.++.
T Consensus       246 L~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~~-sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        246 MELSINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLPE-ELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             EECcCCccC-cCChhHh-CCCCEEECcCCccC-ccccccCC-CCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence            999999998 7777654 48999999999998 56766542 2338999999998 4565543  479999999999984


Q ss_pred             CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCC
Q 011101          334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKL  413 (493)
Q Consensus       334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l  413 (493)
                       +|..+  ..+|+.|++++|.++ .+|..+.  ++|+.|+|++|+|+ .+|..+  .++|+.|+|++|+|+.++..+.  
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--  387 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--  387 (754)
T ss_pred             -CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--
Confidence             56544  368999999999999 5777664  68999999999998 567665  3689999999999999887654  


Q ss_pred             CCCCEEEeeCCcCCCCCCCC
Q 011101          414 IKRKVLDVRMNCILDLPNQR  433 (493)
Q Consensus       414 ~~L~~L~L~~N~l~~lp~~~  433 (493)
                      .+|+.|++++|+|+.+|..+
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl  407 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESL  407 (754)
T ss_pred             HHHHHHhhccCCcccCchhH
Confidence            37999999999999998754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=4.3e-21  Score=183.15  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC-CCCCCCCcccccCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIK  249 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~  249 (493)
                      ......+.++|..|+|+.   .-+.+|+.+.+|+.|||++|+|+.+-|++|..+.+|..|-+-+ |+|+......|.+|.
T Consensus        64 ~LP~~tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             cCCCcceEEEeccCCccc---CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            445667888888888887   5667788888888888888888888888888888877766555 888766667788888


Q ss_pred             CCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCc
Q 011101          250 NLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE  306 (493)
Q Consensus       250 ~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~  306 (493)
                      .|+.|.+.-|.+.....+.+..+ +|..|.+.+|.+...--..+..+... .+.+..|.
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            88888888888875555555555 77778888887763333345554444 45554444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=3.6e-21  Score=200.78  Aligned_cols=261  Identities=21%  Similarity=0.283  Sum_probs=166.3

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|+.++|.++.   ...  -..-.+|+++++++|++++ +|+.++.+.+|+.|++.+|+|+ .+|..+..+++|++
T Consensus       219 ~~l~~L~a~~n~l~~---~~~--~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTT---LDV--HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS  291 (1081)
T ss_pred             cchheeeeccCccee---ecc--ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence            456666666666654   111  1123467777888777773 5577777777888888777774 66677777777777


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccc-ccccc-c-hhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENI-GSTGA-L-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNN  329 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~-~~~~~-l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (493)
                      |++.+|.+. .+|...... +|++|+|..|++. .+|+.+ ..... + .++.+.|++.....-.=..+..|+.|++.+|
T Consensus       292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence            777777777 555555533 7777777777776 344432 22222 2 4555556555332222234566777777777


Q ss_pred             cccCCCcccccCCCCCcEEEecCCCCCCCCcc-cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101          330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP  408 (493)
Q Consensus       330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  408 (493)
                      .++...-..+.+..+|+.|+|++|++. .+|+ .+.++..|++|+||+|+++ .+|..+..+..|++|...+|+|..+| 
T Consensus       370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-  446 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-  446 (1081)
T ss_pred             cccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-
Confidence            777665556677777777777777777 4443 4556777777777777777 56677777777777777777777665 


Q ss_pred             cccCCCCCCEEEeeCCcCCCC--CCCC--CchhhcccccCCC
Q 011101          409 ECRKLIKRKVLDVRMNCILDL--PNQR--SREECGKFFSESK  446 (493)
Q Consensus       409 ~~~~l~~L~~L~L~~N~l~~l--p~~~--~~~~~~~~~~~~~  446 (493)
                      .+..++.|+.+|++.|+|+.+  +...  .++.-+++.+|.+
T Consensus       447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            666777777777777776652  2221  3444555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=2.2e-18  Score=184.82  Aligned_cols=221  Identities=21%  Similarity=0.262  Sum_probs=124.5

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++.+|+++.    +|.   .+++|++|++++|+|+. +|..   ..+|++|++++|.++ .+|..   ..+|+
T Consensus       221 ~~~L~~L~L~~N~Lt~----LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~  285 (788)
T PRK15387        221 PAHITTLVIPDNNLTS----LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLC  285 (788)
T ss_pred             hcCCCEEEccCCcCCC----CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc---hhhcC
Confidence            3467888888888876    443   24678888888888874 4432   356667777777664 23322   23455


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCcccccccc-----------------ccc-hhhcccCcCCCCCchh
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGST-----------------GAL-YVTFANNEFTGPIPSS  314 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-----------------~~l-~L~l~~n~l~~~~p~~  314 (493)
                      .|+|++|+++ .+|..  ..+|+.|+|++|++++ +|.....+                 ..+ +|++++|+++ .+|..
T Consensus       286 ~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l  360 (788)
T PRK15387        286 KLWIFGNQLT-SLPVL--PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL  360 (788)
T ss_pred             EEECcCCccc-ccccc--ccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC
Confidence            5566666555 34331  1255566666665553 22211111                 112 4555555555 23322


Q ss_pred             hhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCc
Q 011101          315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLV  394 (493)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  394 (493)
                      .   .+|+.|++++|.+.+ +|..   ..+|+.|+|++|.|+ .+|..   ..+|+.|++++|+|++ +|..   ..+|+
T Consensus       361 p---~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~  425 (788)
T PRK15387        361 P---SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLL  425 (788)
T ss_pred             C---cccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhh
Confidence            1   234455555555552 3332   245666677777666 34432   2456677777777663 4432   23566


Q ss_pred             EEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          395 NLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       395 ~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      .|++++|+|+.+|..+..+.+|+.|+|++|.|++
T Consensus       426 ~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        426 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence            6777777777666666677777777777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.77  E-value=5.3e-20  Score=192.14  Aligned_cols=244  Identities=25%  Similarity=0.334  Sum_probs=210.1

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ...+++.+|++.|++++    +|+.+..+.+|+.+++.+|.++ .+|..+...++|+.|++.+|.+. .+|....+++.|
T Consensus       239 ~p~nl~~~dis~n~l~~----lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSN----LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             ccccceeeecchhhhhc----chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence            45689999999999998    8899999999999999999996 68888999999999999999995 778888899999


Q ss_pred             cEEEcccccCCCCCCcccccc---ccCEEEccCccCCCCccccc-cccccc-hhhcccCcCCCCCchhhhhhhhhHHHHh
Q 011101          252 TFLDLRFNSFSGPVPAEIFYL---DLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLF  326 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~---~L~~L~L~~n~l~~~~p~~~-~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L  326 (493)
                      ++|+|..|.+. .+|+.+...   +|+.|+.+.|++.. .|..= .....+ .|.+.+|.++...-..+-++.+|+.|+|
T Consensus       313 ~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            99999999998 788766544   68889999998873 33211 122334 8999999999887778889999999999


Q ss_pred             ccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101          327 LNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       327 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      ++|++...-...+.++..|++|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|++.|+|+.+
T Consensus       391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence            999999554567889999999999999999 89999999999999999999998 677 789999999999999999985


Q ss_pred             C-ccccCCCCCCEEEeeCCcC
Q 011101          407 G-PECRKLIKRKVLDVRMNCI  426 (493)
Q Consensus       407 ~-~~~~~l~~L~~L~L~~N~l  426 (493)
                      . +.....++|++|||++|.-
T Consensus       468 ~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  468 TLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhCCCcccceeeccCCcc
Confidence            3 3333448999999999974

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=6.2e-18  Score=181.34  Aligned_cols=221  Identities=24%  Similarity=0.264  Sum_probs=143.7

Q ss_pred             eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      -..|+|++++++.    +|..+.  .+|+.|++.+|+++. +|.   .+++|++|+|++|+|+ .+|..   ..+|+.|+
T Consensus       203 ~~~LdLs~~~Lts----LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~  268 (788)
T PRK15387        203 NAVLNVGESGLTT----LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELS  268 (788)
T ss_pred             CcEEEcCCCCCCc----CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence            5578999999987    777765  489999999999995 554   3588999999999997 45543   47899999


Q ss_pred             cccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          256 LRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      |++|.+. .+|...  .+|+.|+|++|+++ .+|...   ..+ +|++++|.+.+ +|...   .+|+.|++++|.+++ 
T Consensus       269 Ls~N~L~-~Lp~lp--~~L~~L~Ls~N~Lt-~LP~~p---~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        269 IFSNPLT-HLPALP--SGLCKLWIFGNQLT-SLPVLP---PGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-  336 (788)
T ss_pred             ccCCchh-hhhhch--hhcCEEECcCCccc-cccccc---cccceeECCCCcccc-CCCCc---ccccccccccCcccc-
Confidence            9999998 566522  37999999999998 455432   334 88999999885 44322   345667777777763 


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccC-----------------CCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC-----------------LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS  397 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  397 (493)
                      +|..   ..+|++|+|++|+|+ .+|.....                 ..+|+.|+|++|+|++ +|..   ..+|+.|+
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~Ld  408 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELM  408 (788)
T ss_pred             cccc---ccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEE
Confidence            4431   246777777777777 34432211                 1234455555555542 3321   23455555


Q ss_pred             eeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCCC
Q 011101          398 LSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR  433 (493)
Q Consensus       398 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~  433 (493)
                      +++|+|++++..   ..+|+.|++++|+|+.+|..+
T Consensus       409 LS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl  441 (788)
T PRK15387        409 VSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESL  441 (788)
T ss_pred             ccCCcCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence            555555554322   224555666666666666543

>PLN03210 Resistant to P

Probab=99.76  E-value=1.1e-17  Score=191.50  Aligned_cols=254  Identities=17%  Similarity=0.145  Sum_probs=136.0

Q ss_pred             CCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEE
Q 011101          200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLF  278 (493)
Q Consensus       200 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~  278 (493)
                      +.+|+.|++.+|++. .++..+..+++|++|+|+++.....+|. +..+++|++|+|++|.....+|..+... +|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            345555555555554 2344455555555555555443334442 4455555555555555444555554444 555556


Q ss_pred             ccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccc------------------
Q 011101          279 LNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEI------------------  339 (493)
Q Consensus       279 L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l------------------  339 (493)
                      +++|.....+|..+ +++.+ +|++++|...+.+|..   ..+|++|++++|.+. .+|..+                  
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence            55554444444443 33333 5555555444444432   234555566666554 233221                  


Q ss_pred             ------------cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC
Q 011101          340 ------------GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG  407 (493)
Q Consensus       340 ------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  407 (493)
                                  ....+|+.|+|++|...+.+|.++.++++|+.|+|++|...+.+|..+ .+++|+.|+|++|......
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence                        012356666666666555677777777777777777764444555544 5667777777775432221


Q ss_pred             ccccCCCCCCEEEeeCCcCCCCCCCCCchhhcccc---------c---CCCCCCCCCCCcccCCCCCC
Q 011101          408 PECRKLIKRKVLDVRMNCILDLPNQRSREECGKFF---------S---ESKKCPNERSLTLVPCARNR  463 (493)
Q Consensus       408 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~---------~---~~~~c~~~~~~~~~~C~~~~  463 (493)
                      +.  ...+|+.|+|++|.|+.+|..+..+..+..+         .   ....+..+..+.+.+|.+..
T Consensus       842 p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        842 PD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             cc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence            22  2357889999999999888654433322221         1   11223344555667776554

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=4.3e-19  Score=151.53  Aligned_cols=166  Identities=23%  Similarity=0.405  Sum_probs=119.2

Q ss_pred             hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccC
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD  275 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~  275 (493)
                      +-.+.+++.|.|++|+++ .+|..+..+.+|+.|++++|+|+ .+|.++..+++|+.|+++-|++. .+|..++.. .|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            334555666666666666 45555666666666666666663 56666666666666666666665 555555444 555


Q ss_pred             EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101          276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL  355 (493)
Q Consensus       276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  355 (493)
                      .|||.+|++..                      ..+|..|..++.|+.|+|++|.+. .+|..++.+++|+.|.+.+|.+
T Consensus       106 vldltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  106 VLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            55665555542                      256777888999999999999998 7888899999999999999988


Q ss_pred             CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101          356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                      - .+|..++.+..|++|.+.+|+++ .+|..++++
T Consensus       163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             h-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            8 78888888888999999999888 666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=4.3e-19  Score=176.01  Aligned_cols=131  Identities=24%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             hhhcccCcCCCC----CchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCC
Q 011101          299 YVTFANNEFTGP----IPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCL  366 (493)
Q Consensus       299 ~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l  366 (493)
                      .|++++|.+++.    +...+..+.+|++|++++|.+++.    +...+..+.+|+.|+|++|.+++.    +...+..+
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~  220 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL  220 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence            444444444421    222344445566667766666632    222334456777777777776532    23344556


Q ss_pred             CCCCEEEcccCCCCCCcchhhcC-----CCCCcEEeeeCCcCCC-----CCccccCCCCCCEEEeeCCcCCCC
Q 011101          367 SSMQYLNLAMNQFYGPVPEIVCQ-----LPKLVNLSLSYNYFTQ-----VGPECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       367 ~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      ++|++|++++|.+++.....+..     ...|+.|++++|.|+.     +...+..+++|+.+++++|.++.-
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            67777777777776432222221     2577777777777763     122345556777777777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=6.9e-19  Score=174.55  Aligned_cols=253  Identities=20%  Similarity=0.167  Sum_probs=181.3

Q ss_pred             cceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCC------ccCcccCCCCCCCEEECcCCCCCCCCccccc
Q 011101          174 KAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTK------SIPKMTSKLKFLYELDVSNNKLFGGFPMEVV  246 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  246 (493)
                      .+++.|+++++.++... ..+...+...++|++|+++++.+.+      .++..+..+.+|++|++++|.+.+..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            45889999999885511 0245567778889999999988862      2345667788999999999998766666665


Q ss_pred             CCCC---CcEEEcccccCCCCC----Cccccc--cccCEEEccCccCCCCc----cccccccccc-hhhcccCcCCCC--
Q 011101          247 NIKN---LTFLDLRFNSFSGPV----PAEIFY--LDLDVLFLNNNKFSQNL----PENIGSTGAL-YVTFANNEFTGP--  310 (493)
Q Consensus       247 ~l~~---L~~L~Ls~n~l~~~~----p~~~~~--~~L~~L~L~~n~l~~~~----p~~~~~~~~l-~L~l~~n~l~~~--  310 (493)
                      .+.+   |++|++++|.+++..    ...+..  .+|+.|++++|.+++..    ...+..+..+ +|++++|.+.+.  
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            5555   999999999887321    122222  38899999999988532    2234444455 889999988753  


Q ss_pred             --CchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCCCccccc-----CCCCCCEEEcccCCC
Q 011101          311 --IPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGPIPHSFG-----CLSSMQYLNLAMNQF  379 (493)
Q Consensus       311 --~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l  379 (493)
                        +...+..+.+|++|++++|.+.+.    +...+..+++|++|++++|.+++.....+.     ....|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              233344556899999999998743    334566789999999999999863222222     247999999999999


Q ss_pred             CC----CcchhhcCCCCCcEEeeeCCcCCCCCc-----cccCC-CCCCEEEeeCCcC
Q 011101          380 YG----PVPEIVCQLPKLVNLSLSYNYFTQVGP-----ECRKL-IKRKVLDVRMNCI  426 (493)
Q Consensus       380 ~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~l-~~L~~L~L~~N~l  426 (493)
                      ++    .+...+..+++|+.|++++|.++....     .+... ..|++|++.+|.+
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            73    233455667899999999999996422     34445 7899999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.4e-19  Score=152.99  Aligned_cols=160  Identities=26%  Similarity=0.398  Sum_probs=84.1

Q ss_pred             CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhc
Q 011101          224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTF  302 (493)
Q Consensus       224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l  302 (493)
                      +.+.+.|.||+|.++ .+|..+..+.+|+.|++++|+++ .+|..+..+ +|+.|+++-|++.                 
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-----------------   92 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-----------------   92 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-----------------
Confidence            344444455555553 33444444555555555555544 333333333 3444444333332                 


Q ss_pred             ccCcCCCCCchhhhhhhhhHHHHhccccccC-CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 011101          303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG-CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG  381 (493)
Q Consensus       303 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  381 (493)
                             .+|..|+.++.|+.|||.+|++.. .+|..|..+..|+-|+|++|.+. .+|..++.+++|+.|.+.+|.+- 
T Consensus        93 -------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-  163 (264)
T KOG0617|consen   93 -------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-  163 (264)
T ss_pred             -------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-
Confidence                   445555666666666666665543 34555555555666666666665 55555556666666666655554 


Q ss_pred             CcchhhcCCCCCcEEeeeCCcCCCCCcccc
Q 011101          382 PVPEIVCQLPKLVNLSLSYNYFTQVGPECR  411 (493)
Q Consensus       382 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~  411 (493)
                      .+|..++.++.|+.|.+.+|+++-+++.+.
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~vlppel~  193 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLTVLPPELA  193 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence            455555555556666666666555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-18  Score=166.73  Aligned_cols=252  Identities=18%  Similarity=0.129  Sum_probs=183.6

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIK  249 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  249 (493)
                      ....++++|||++|+|+.   +-|++|..+..|..|-+.+ |+|+..-...|++|..|+.|.+.-|++.-...+.|..++
T Consensus        88 ~~l~~LRrLdLS~N~Is~---I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   88 KTLHRLRRLDLSKNNISF---IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             cchhhhceecccccchhh---cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            346789999999999999   8899999999999887777 999977668899999999999999999888888999999


Q ss_pred             CCcEEEcccccCCCCCCc-ccccc-ccCEEEccCccCCC------------Cccccccccccc-hhhcccCcCCCCCchh
Q 011101          250 NLTFLDLRFNSFSGPVPA-EIFYL-DLDVLFLNNNKFSQ------------NLPENIGSTGAL-YVTFANNEFTGPIPSS  314 (493)
Q Consensus       250 ~L~~L~Ls~n~l~~~~p~-~~~~~-~L~~L~L~~n~l~~------------~~p~~~~~~~~l-~L~l~~n~l~~~~p~~  314 (493)
                      +|..|.+..|.+. .++. .+... +++.+.+..|.+..            ..+..++..... -..+.++++...-...
T Consensus       165 ~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k  243 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK  243 (498)
T ss_pred             hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence            9999999999998 5655 44444 88888888887431            112222222222 2222333333222222


Q ss_pred             h-hhhhhhHHHHhccccccCCCc-ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCC
Q 011101          315 I-GRAKYLLEVLFLNNFFTGCLP-YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK  392 (493)
Q Consensus       315 l-~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  392 (493)
                      + ..++.+..-..+.+...+..| ..|..+++|++|+|++|+|+++...+|..+..|++|.|..|+|..+-...|.++..
T Consensus       244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~  323 (498)
T KOG4237|consen  244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG  323 (498)
T ss_pred             hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence            2 112222222223333443444 46788888889999999988888888888888888888888887666667888888


Q ss_pred             CcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcC
Q 011101          393 LVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCI  426 (493)
Q Consensus       393 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l  426 (493)
                      |+.|+|.+|+|+.+-+ .|..+.+|..|.|-.|.+
T Consensus       324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            8888888888888744 677788888887777654

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=1e-14  Score=156.51  Aligned_cols=154  Identities=23%  Similarity=0.338  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC----CCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCC
Q 011101          126 IQLAFKVIQRFKKRITYDPQGIANTWMGPDVCN----KYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLE  201 (493)
Q Consensus       126 ~~~~~~~L~~~k~~~~~d~~~~~~~W~~~~~C~----~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~  201 (493)
                      ...+..++..+|..+. ++.  ..+|.+ +.|.    .|.||.|..........++.|+|++|++.+   .+|..+..++
T Consensus       370 ~~~~~~aL~~~k~~~~-~~~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g---~ip~~i~~L~  442 (623)
T PLN03150        370 LLEEVSALQTLKSSLG-LPL--RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG---FIPNDISKLR  442 (623)
T ss_pred             CchHHHHHHHHHHhcC-Ccc--cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc---cCCHHHhCCC
Confidence            4557788999998874 322  147976 4553    699999964322222369999999999999   8999999999


Q ss_pred             cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc--ccCEEEc
Q 011101          202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFL  279 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~L  279 (493)
                      +|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+.++++|++|+|++|.++|.+|..+...  ++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999988764  6788999


Q ss_pred             cCccCCC
Q 011101          280 NNNKFSQ  286 (493)
Q Consensus       280 ~~n~l~~  286 (493)
                      .+|....
T Consensus       523 ~~N~~lc  529 (623)
T PLN03150        523 TDNAGLC  529 (623)
T ss_pred             cCCcccc
Confidence            9887543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.50  E-value=1.5e-15  Score=151.56  Aligned_cols=175  Identities=25%  Similarity=0.349  Sum_probs=108.4

Q ss_pred             CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhc
Q 011101          224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTF  302 (493)
Q Consensus       224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l  302 (493)
                      +..-...||+.|++. .+|..+..+..|+.|.|.+|.|. .+|..+..+ .|.+|||+.|+++ .+|..++.+.+..|.+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV  150 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence            444556777778774 67777777777777778777777 666666666 6777777777776 5666666666666666


Q ss_pred             ccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCC
Q 011101          303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP  382 (493)
Q Consensus       303 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  382 (493)
                      ++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.++.|.+. .+|..+..| .|..||+|.|+++ .
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~  225 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y  225 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence            666665 55556665556666666666655 45555555555555555555555 444444433 3555555555555 4


Q ss_pred             cchhhcCCCCCcEEeeeCCcCCCC
Q 011101          383 VPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       383 ~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      +|-.|..|..|++|-|.+|.+..-
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCCCC
Confidence            555555555555555555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.47  E-value=6e-15  Score=147.35  Aligned_cols=194  Identities=28%  Similarity=0.417  Sum_probs=146.6

Q ss_pred             CCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEc
Q 011101          200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFL  279 (493)
Q Consensus       200 l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L  279 (493)
                      +..-...||+.|++. .+|..+..+-.|+.|.|..|.| ..+|..+.++..|.+|||+.|+++ .+|..++.+-|+.|-+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV  150 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence            344455566666666 5666666666677777777776 366777777777777777777777 7777777777888888


Q ss_pred             cCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101          280 NNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP  358 (493)
Q Consensus       280 ~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  358 (493)
                      ++|+++ .+|..++....+ .||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .=.|..||++.|++. .
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence            888876 677777755555 7888888877 78888999999999999999998 5677776 445889999999999 8


Q ss_pred             CcccccCCCCCCEEEcccCCCCCCcchhhcCCCC---CcEEeeeCCc
Q 011101          359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK---LVNLSLSYNY  402 (493)
Q Consensus       359 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~  402 (493)
                      +|-.|..|+.|++|-|.+|.++ ..|..++..-.   .++|+..-++
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            9999999999999999999998 55666654433   3566666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.38  E-value=5.8e-13  Score=136.24  Aligned_cols=194  Identities=34%  Similarity=0.467  Sum_probs=125.8

Q ss_pred             EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCC-CCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101          178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK-FLYELDVSNNKLFGGFPMEVVNIKNLTFLDL  256 (493)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  256 (493)
                      .+++..+.+..    ....+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .++..+..+++|+.|++
T Consensus        97 ~l~~~~~~~~~----~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRS----NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeecccccccc----CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence            57888887754    2344666788999999999998 4556666674 8999999999985 56567888999999999


Q ss_pred             ccccCCCCCCccc-cccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          257 RFNSFSGPVPAEI-FYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       257 s~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      ++|++. .++... ....|+.|++++|++. .+|..+.....+ ++.+++|.+. ..+..+.++.++..+.+.+|++. .
T Consensus       171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~  246 (394)
T COG4886         171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-D  246 (394)
T ss_pred             CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-e
Confidence            999998 677666 4558999999999987 455444344433 5555555422 33344455555555555555554 2


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV  383 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  383 (493)
                      ++..++.+.++++|++++|.++ .++. +..+.+|+.|++++|.+....
T Consensus       247 ~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         247 LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence            2344455555555555555555 2332 455555555555555555433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.36  E-value=1.3e-12  Score=133.71  Aligned_cols=195  Identities=29%  Similarity=0.378  Sum_probs=118.1

Q ss_pred             EEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCC-CCcEEEcccccCCCCCCcccccc-ccCEEEccCc
Q 011101          205 IFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIK-NLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN  282 (493)
Q Consensus       205 ~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n  282 (493)
                      .+++..|.+...+ ..+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .++..+... +|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            5677777664332 23445567777888877775 4555555554 7788888888777 555444444 7777777777


Q ss_pred             cCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcc
Q 011101          283 KFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH  361 (493)
Q Consensus       283 ~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  361 (493)
                      ++. .++...+....+ .|++++|.+. .+|..+.....|++|.+++|.+. ..+..+..+.++..|.+.+|++. .++.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            776 344444344444 5666666666 45555445555666666666433 33445566666666666666665 3355


Q ss_pred             cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101          362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP  408 (493)
Q Consensus       362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  408 (493)
                      .+..+.+|++|++++|.++. ++. +..+.+|+.|++++|.+...++
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence            55666666666666666663 232 5556666666666666665544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=2.7e-13  Score=125.88  Aligned_cols=134  Identities=22%  Similarity=0.162  Sum_probs=108.0

Q ss_pred             cccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEE
Q 011101          295 TGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN  373 (493)
Q Consensus       295 ~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  373 (493)
                      +..+ .+|+++|.++ .+.+++.-++.++.|++++|.+...  ..+..+.+|+.|||++|.++ .+..+-..+.+++.|+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            3445 7888888887 6777777788889999999998843  34788899999999999988 5666667788899999


Q ss_pred             cccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC--CccccCCCCCCEEEeeCCcCCCCCCCCC
Q 011101          374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPECRKLIKRKVLDVRMNCILDLPNQRS  434 (493)
Q Consensus       374 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~~  434 (493)
                      |++|.|..  -..+..+-+|..||+++|+|...  ...+++++.|+.+.|.+|.|..+++.+.
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRT  419 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRT  419 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHH
Confidence            99998863  24467778899999999999875  3478899999999999999999987644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=6.7e-13  Score=129.17  Aligned_cols=207  Identities=18%  Similarity=0.186  Sum_probs=87.4

Q ss_pred             CCCcCcEEEccCCcCCCccC-cccCCCCCCCEEECcCCCCCCC--CcccccCCCCCcEEEcccccCCCCCCccccc--cc
Q 011101          199 KLEDLAIFHANSNNFTKSIP-KMTSKLKFLYELDVSNNKLFGG--FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY--LD  273 (493)
Q Consensus       199 ~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~  273 (493)
                      ++.+|+...|.++.+..... .....|++++.|||+.|-|+..  +......|++|+.|+|+.|++..-.......  ..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34444444444444431110 2233455555555555544321  1112234555555555555544211111111  15


Q ss_pred             cCEEEccCccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC-cccccCCCCCcEEEe
Q 011101          274 LDVLFLNNNKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL-PYEIGFLSNSTVFDV  350 (493)
Q Consensus       274 L~~L~L~~n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L  350 (493)
                      |+.|.|+.|.++..--.. +..+..+ .|++..|......-.....+..|++|+|++|++...- -...+.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            555666665554211000 0111111 3333333211122223334456666666666655211 133455666666666


Q ss_pred             cCCCCCCC-Cccc-----ccCCCCCCEEEcccCCCCCC-cchhhcCCCCCcEEeeeCCcCCC
Q 011101          351 GNNRLTGP-IPHS-----FGCLSSMQYLNLAMNQFYGP-VPEIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       351 s~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      +.+.+... +|+.     ...+.+|++|+++.|+|..- .-..+..+.+|+.|.+..|.|+.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            66665532 1111     12345566666666655311 11223344555555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=3.6e-12  Score=120.97  Aligned_cols=235  Identities=17%  Similarity=0.134  Sum_probs=154.1

Q ss_pred             ccceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCC----ccC-------cccCCCCCCCEEECcCCCCCCC
Q 011101          173 KKAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTK----SIP-------KMTSKLKFLYELDVSNNKLFGG  240 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~----~~p-------~~~~~l~~L~~L~Ls~n~l~~~  240 (493)
                      ...++.|+|++|.|..+. ..+-..+.+.++|+..+++.- ++|    .+|       ..+..+.+|++||||.|-|...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            456888999998876521 123345677778888877653 222    222       2345566888888888887533


Q ss_pred             Ccc----cccCCCCCcEEEcccccCCCCCCcccc--------------ccccCEEEccCccCCCCccccccccccchhhc
Q 011101          241 FPM----EVVNIKNLTFLDLRFNSFSGPVPAEIF--------------YLDLDVLFLNNNKFSQNLPENIGSTGALYVTF  302 (493)
Q Consensus       241 ~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~--------------~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l  302 (493)
                      .+.    .+.++..|++|+|.+|.+...--..++              ...|+++...+|++....-.            
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~------------  175 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT------------  175 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH------------
Confidence            332    345678888888888887632111111              11566666666665421111            


Q ss_pred             ccCcCCCCCchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEc
Q 011101          303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNL  374 (493)
Q Consensus       303 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L  374 (493)
                             .+-..|...+.|+.+.+..|.+...    +...|..+++|+.|||.+|.++..    +...+..+++|+.|++
T Consensus       176 -------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  176 -------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             -------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence                   1123345556778888888877532    235677899999999999998742    3445667789999999


Q ss_pred             ccCCCCCCcchhh-----cCCCCCcEEeeeCCcCCCC-----CccccCCCCCCEEEeeCCcCC
Q 011101          375 AMNQFYGPVPEIV-----CQLPKLVNLSLSYNYFTQV-----GPECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       375 s~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~  427 (493)
                      ++|.+.......|     ...++|+.|.+.+|.|+.-     -..+...+.|..|+|++|.+.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9998875543333     2367999999999999862     113456889999999999984

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.2e-11  Score=116.83  Aligned_cols=208  Identities=16%  Similarity=0.218  Sum_probs=145.3

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCc--cCcccCCCCCCCEEECcCCCCCCCCccc-ccC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKS--IPKMTSKLKFLYELDVSNNKLFGGFPME-VVN  247 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~  247 (493)
                      .+..+|+.+.|.+..+...+  .-.....+++++.|||++|-|..-  +......|++|+.|+|+.|.+....... -..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~--~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAG--IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccc--hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            45677888889888776511  114678899999999999988742  3344578999999999999885322211 135


Q ss_pred             CCCCcEEEcccccCCCCCCcccc--ccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCc--hhhhhhhhhH
Q 011101          248 IKNLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP--SSIGRAKYLL  322 (493)
Q Consensus       248 l~~L~~L~Ls~n~l~~~~p~~~~--~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p--~~l~~l~~L~  322 (493)
                      +..|+.|.|+.|.++..--..+.  ..+|+.|+|..|............+..+ .|+|++|.+.. ++  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence            78899999999999832212221  2289999999996332222233334444 89999998873 33  3467889999


Q ss_pred             HHHhccccccCCC-ccc-----ccCCCCCcEEEecCCCCCC-CCcccccCCCCCCEEEcccCCCCC
Q 011101          323 EVLFLNNFFTGCL-PYE-----IGFLSNSTVFDVGNNRLTG-PIPHSFGCLSSMQYLNLAMNQFYG  381 (493)
Q Consensus       323 ~L~L~~n~l~~~~-p~~-----l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~  381 (493)
                      .|.++.+.+...- ++.     ...+.+|++|++..|++.. ..-..+..+.+|+.|.+..|.++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            9999999987532 222     3567899999999999962 122345567888999999998874

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=1.7e-10  Score=124.19  Aligned_cols=105  Identities=28%  Similarity=0.430  Sum_probs=84.8

Q ss_pred             hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcCCCCCc-cccC-CCCCCEEEeeCCc
Q 011101          401 NYFTQVGP-ECRK-LIKRKVLDVRMNC  425 (493)
Q Consensus       401 N~l~~~~~-~~~~-l~~L~~L~L~~N~  425 (493)
                      |++++..+ .+.. +.++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            88887543 4443 3456778888775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.04  E-value=6.1e-11  Score=121.89  Aligned_cols=241  Identities=20%  Similarity=0.184  Sum_probs=146.4

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      ..+..++++.|.+..    +-..+..+++|+.|++..|.|.... ..+..+.+|++|+|++|.|+...  .+..+..|+.
T Consensus        72 ~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhh
Confidence            345555566666554    3344666777777777777777432 22566777777777777775432  3455666777


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      |++++|.|+ .+...-....|+.+++++|.+...-......+..+ .+++.+|.+...  ..+..+..+..+++..|.+.
T Consensus       145 L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  145 LNLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             heeccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence            777777776 44433334477777777777764333102333334 677777766522  33445556666677777776


Q ss_pred             CCCcccccCCCC--CcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC---C
Q 011101          333 GCLPYEIGFLSN--STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV---G  407 (493)
Q Consensus       333 ~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~  407 (493)
                      ..-  .+..+..  |+.+++++|.+. ..+..+..+..+..|++.+|++...  ..+.....+..+.+..|.+...   .
T Consensus       222 ~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (414)
T KOG0531|consen  222 KLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS  296 (414)
T ss_pred             ecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence            322  1222333  778888888877 4445566777788888888877643  2234455666677777776632   1


Q ss_pred             c--cccCCCCCCEEEeeCCcCCCC
Q 011101          408 P--ECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       408 ~--~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      .  .......++.+.+..|.+...
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  297 QEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             ccccccccccccccccccCccccc
Confidence            1  145667777778887777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=2.3e-10  Score=101.89  Aligned_cols=111  Identities=25%  Similarity=0.334  Sum_probs=45.0

Q ss_pred             hhhhhhHHHHhccccccCCCccccc-CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh-cCCCCC
Q 011101          316 GRAKYLLEVLFLNNFFTGCLPYEIG-FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV-CQLPKL  393 (493)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L  393 (493)
                      .+..++++|+|++|.++. + +.++ .+.+|+.|||++|.|+ .+. .+..+.+|++|++++|+|+. +...+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            445578999999999984 3 3455 5789999999999999 443 57788999999999999985 43334 458999


Q ss_pred             cEEeeeCCcCCCCC--ccccCCCCCCEEEeeCCcCCCCCC
Q 011101          394 VNLSLSYNYFTQVG--PECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       394 ~~L~Ls~N~l~~~~--~~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      +.|+|++|+|..+.  ..+..+++|++|++.+|.++..+.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~  130 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN  130 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence            99999999998863  357889999999999999986543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=1.2e-10  Score=103.69  Aligned_cols=101  Identities=31%  Similarity=0.247  Sum_probs=40.6

Q ss_pred             hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccc-cCCCCCCEEEcccCCCCCCc-chhhcCCCCCcE
Q 011101          318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF-GCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVN  395 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~  395 (493)
                      +.+|+.|++++|.++. + ..+..+..|++|++++|.|+ .+.+.+ ..+++|++|+|++|+|...- -..+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            3455555666665553 2 23556677777777777777 343333 35677777777777776421 234566777888


Q ss_pred             EeeeCCcCCCCCc----cccCCCCCCEEEe
Q 011101          396 LSLSYNYFTQVGP----ECRKLIKRKVLDV  421 (493)
Q Consensus       396 L~Ls~N~l~~~~~----~~~~l~~L~~L~L  421 (493)
                      |+|.+|.++....    .+..+++|+.||-
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            8888887776432    3566777777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.94  E-value=1.2e-10  Score=119.81  Aligned_cols=218  Identities=23%  Similarity=0.214  Sum_probs=158.5

Q ss_pred             hCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEE
Q 011101          198 EKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVL  277 (493)
Q Consensus       198 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L  277 (493)
                      ..+..++.+++..|.|.. +-..+..+++|+.|++.+|.|... ...+..+.+|++|+|++|.|+ .+...-....|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccchhhccchhhh
Confidence            456778888899999985 335578899999999999999643 333778999999999999998 44443334479999


Q ss_pred             EccCccCCCCccccccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101          278 FLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL  355 (493)
Q Consensus       278 ~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  355 (493)
                      ++++|.+...  ..+..+..+ .+++++|.+...-. . ...+.+|+.+++.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            9999999732  233335555 88999998875433 1 57788899999999998742  3345556666778888988


Q ss_pred             CCCCcccccCCC--CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCC
Q 011101          356 TGPIPHSFGCLS--SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       356 ~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~  427 (493)
                      +. +- .+..+.  +|+.+++++|.+. .++..+..+..+..|++.+|++..+. .+.....+..+....|.+.
T Consensus       221 ~~-~~-~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  221 SK-LE-GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ee-cc-CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence            83 22 222233  3899999999987 33355667788999999999988762 3445566667777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=2.9e-10  Score=105.98  Aligned_cols=198  Identities=18%  Similarity=0.204  Sum_probs=141.5

Q ss_pred             CcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhc---ccCcCCCCCchhhhh
Q 011101          241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTF---ANNEFTGPIPSSIGR  317 (493)
Q Consensus       241 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l---~~n~l~~~~p~~l~~  317 (493)
                      ++-.+.-+++|+.+.++++.-.....-......|+++.+.+..+.. .+. +--.+.+ .|.   ......|..-..+..
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~-~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VPS-LLPETIL-ADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-ccc-ccchhhh-cCccCCCCCccCCceEEecch
Confidence            3444556788888889888765333333344488898888776542 111 1111111 111   112234444555666


Q ss_pred             hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101          318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS  397 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  397 (493)
                      ++.|++|||++|.++ .+..+..-++.++.|++++|.|. .+- .+..+.+|+.||||+|.++ .+-.+-..+-++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            788999999999999 67778888899999999999998 443 4888999999999999998 5566667788999999


Q ss_pred             eeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC--CCCchhhcc---cccCCC
Q 011101          398 LSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN--QRSREECGK---FFSESK  446 (493)
Q Consensus       398 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~~~~~~~~~---~~~~~~  446 (493)
                      |+.|.|..+ ..+.++-+|..||+++|+|..+..  .++.+.|+.   +.+||.
T Consensus       359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            999999876 467788899999999999998753  456666643   444544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=1.2e-08  Score=112.60  Aligned_cols=248  Identities=17%  Similarity=0.186  Sum_probs=144.9

Q ss_pred             cceEEEEcCCCC--cCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          174 KAVAGVDFNGYR--FNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       174 ~~l~~L~L~~n~--l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ..+++|-+.+|.  +..   ....+|..++.|++|||++|.-.+.+|..+++|-+|++|++++..+. .+|..+.+|+.|
T Consensus       545 ~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            357777777775  444   34556888888999999887776788888888888999999888885 788888888889


Q ss_pred             cEEEcccccCCCCCCcccccc-ccCEEEccCccCC--CCccccccccccc-hhhcccCcCCCCCchhhhhhhhhH----H
Q 011101          252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS--QNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLL----E  323 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~--~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~----~  323 (493)
                      .+|++.++.....++.....+ +|++|.+......  ...-..+.++..+ .+.......  .+-..+..+.+|.    .
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence            999888887665555555433 8888888765522  1111222222222 222211111  1112223333333    3


Q ss_pred             HHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC------CCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101          324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC------LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS  397 (493)
Q Consensus       324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  397 (493)
                      +.+.++... .....+..+.+|+.|.+.++.+......+...      ++++..+.+.++..- ..+.+..-.++|+.|.
T Consensus       699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~  776 (889)
T KOG4658|consen  699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLS  776 (889)
T ss_pred             hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEE
Confidence            333333333 45567788899999999998886332222111      112222222222211 1223333457888888


Q ss_pred             eeCCcCCC-CCccccCCCCCCEEEeeCCcCCCC
Q 011101          398 LSYNYFTQ-VGPECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       398 Ls~N~l~~-~~~~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      +..+.... +++....+..++.+-+..+.+..+
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEecccccccc
Confidence            88766444 444445555555555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.78  E-value=4.2e-10  Score=107.15  Aligned_cols=225  Identities=20%  Similarity=0.231  Sum_probs=153.8

Q ss_pred             cchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCC----CCcc-------cccCCCCCcEEEcc
Q 011101          193 LSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFG----GFPM-------EVVNIKNLTFLDLR  257 (493)
Q Consensus       193 ~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls  257 (493)
                      +-+.+..+..++.++|++|.|...    +...+.+.++|+..++++- ++|    .+|.       .+...++|++|+||
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            334567788999999999999642    4455677789999998863 233    2333       34556789999999


Q ss_pred             cccCCCCCCcccccc-----ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          258 FNSFSGPVPAEIFYL-----DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       258 ~n~l~~~~p~~~~~~-----~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      .|.|....+..+...     +|++|+|.+|.+.-.--..++.   -...+..++       -..+-..|+.+...+|++.
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~~~k-------k~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELAVNK-------KAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHHHHh-------ccCCCcceEEEEeeccccc
Confidence            999876555544322     7888888888875221111111   011111221       1223346777888888876


Q ss_pred             CCC----cccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC----cchhhcCCCCCcEEeeeC
Q 011101          333 GCL----PYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP----VPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       333 ~~~----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~  400 (493)
                      ..-    ...|...+.|+.+.+..|.|...    +...|..+++|+.|||.+|-|+..    +...+..+++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            432    23456678999999999998732    335677899999999999998743    234566788999999999


Q ss_pred             CcCCCCCc-----cc-cCCCCCCEEEeeCCcCCC
Q 011101          401 NYFTQVGP-----EC-RKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       401 N~l~~~~~-----~~-~~l~~L~~L~L~~N~l~~  428 (493)
                      |.+..-..     .+ ...++|++|.+.+|.|+.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            99987432     22 447899999999999875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.78  E-value=2.2e-10  Score=118.02  Aligned_cols=131  Identities=22%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             ccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEE
Q 011101          294 STGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN  373 (493)
Q Consensus       294 ~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  373 (493)
                      ..++...+++.|.+. .+..++.-++.|+.|+|++|++...-  .+..+..|++|||+.|.++ .+|..-..-.+|+.|+
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence            334446677777776 56677888889999999999998543  7888999999999999998 4554221123499999


Q ss_pred             cccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--cccCCCCCCEEEeeCCcCCCCC
Q 011101          374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       374 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      |++|.++. + ..+.++.+|+.||+++|-|.+.-.  -+..+..|+.|+|.+|.+..=|
T Consensus       239 lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  239 LRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99999873 2 457788899999999999887422  3566778899999999876654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=4.6e-09  Score=76.88  Aligned_cols=60  Identities=35%  Similarity=0.505  Sum_probs=34.5

Q ss_pred             CCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcC
Q 011101          344 NSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYF  403 (493)
Q Consensus       344 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  403 (493)
                      +|++|++++|+++...+..|..+++|++|+|++|+++...+..|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666643334555566666666666666544445555666666666666553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=4.6e-09  Score=76.87  Aligned_cols=61  Identities=34%  Similarity=0.413  Sum_probs=44.1

Q ss_pred             CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccC
Q 011101          201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF  261 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  261 (493)
                      ++|++|++++|+++..-+..|.++++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777755556777777777777777777766666777777777777777764

...

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.61  E-value=5e-08  Score=100.68  Aligned_cols=12  Identities=17%  Similarity=0.279  Sum_probs=7.8

Q ss_pred             CCCCCCCCceeec
Q 011101          154 PDVCNKYKGFVCD  166 (493)
Q Consensus       154 ~~~C~~w~gv~c~  166 (493)
                      ++.| -|.+|.-+
T Consensus       640 s~~c-FWvkv~Ed  651 (1102)
T KOG1924|consen  640 SENC-FWVKVNED  651 (1102)
T ss_pred             Cccc-eeeecchh
Confidence            4567 89776544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=3.2e-08  Score=109.26  Aligned_cols=101  Identities=25%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             CCCEEECcCCC--CCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhh
Q 011101          226 FLYELDVSNNK--LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVT  301 (493)
Q Consensus       226 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~  301 (493)
                      .|++|-+..|.  +.......|..++.|+.|||++|.-.+.+|..++.+ +|++|+|+++.+. .+|..+++++.+ +|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            44444444443  222222334444555555555444434445444433 5555555555544 444455544444 455


Q ss_pred             cccCcCCCCCchhhhhhhhhHHHHhc
Q 011101          302 FANNEFTGPIPSSIGRAKYLLEVLFL  327 (493)
Q Consensus       302 l~~n~l~~~~p~~l~~l~~L~~L~L~  327 (493)
                      +..+.....++..+..+.+|++|.+.
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             cccccccccccchhhhcccccEEEee
Confidence            44444333333444444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.2e-09  Score=99.05  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             CCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCC--cCcEEEccCCcCCCc-cCcccCCC-CCCCEEE
Q 011101          156 VCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLE--DLAIFHANSNNFTKS-IPKMTSKL-KFLYELD  231 (493)
Q Consensus       156 ~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~--~L~~L~L~~n~i~~~-~p~~~~~l-~~L~~L~  231 (493)
                      .|-+|.+..-+.      ..-+.+|+.+-.|..      ..++.+.  .+..+.+...-+... +.+.+.-+ +.|++||
T Consensus       124 VC~Rfyr~~~de------~lW~~lDl~~r~i~p------~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lD  191 (419)
T KOG2120|consen  124 VCKRFYRLASDE------SLWQTLDLTGRNIHP------DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLD  191 (419)
T ss_pred             HHHHHhhccccc------cceeeeccCCCccCh------hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhh
Confidence            454566554442      356778888777654      3333332  333444443222221 11222211 3478888


Q ss_pred             CcCCCCCC-CCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCcc
Q 011101          232 VSNNKLFG-GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNK  283 (493)
Q Consensus       232 Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~  283 (493)
                      |++..|+. .+..-+..+.+|+.|.|.++++...+-..++.. +|+.|+|+.+.
T Consensus       192 LS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  192 LSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             cchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence            88877752 233345667888888888888876666655544 78888887664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=2.8e-09  Score=110.03  Aligned_cols=179  Identities=20%  Similarity=0.205  Sum_probs=112.3

Q ss_pred             CcccCCCCCCCEEECcCCCCCCCCcccccCC-CCCcEEEcccccCC----------CCCCccccccccCEEEccCccCCC
Q 011101          218 PKMTSKLKFLYELDVSNNKLFGGFPMEVVNI-KNLTFLDLRFNSFS----------GPVPAEIFYLDLDVLFLNNNKFSQ  286 (493)
Q Consensus       218 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~~p~~~~~~~L~~L~L~~n~l~~  286 (493)
                      |-.+..+..|++|.|.++.|..  ...+..+ .+|++| +.+|.+.          |.+...+....|.+.+.++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            4556667777777777777642  1111111 233333 2222221          12222222226777788888876 


Q ss_pred             Cccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC
Q 011101          287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC  365 (493)
Q Consensus       287 ~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  365 (493)
                      .+..++.-+..+ .|+|++|++...  +.+..++.|++|||++|.+...-.-....++ |..|.|++|.++ .+ ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hh-hhHHh
Confidence            455555555555 788888888754  3778888899999999988843222333444 889999999887 23 35678


Q ss_pred             CCCCCEEEcccCCCCCCcc-hhhcCCCCCcEEeeeCCcCCC
Q 011101          366 LSSMQYLNLAMNQFYGPVP-EIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       366 l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      +.+|+.||+++|-|.+.-- .-++.+..|+.|.|.+|.+--
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8889999999997765321 123456778888898888754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=9.9e-09  Score=94.66  Aligned_cols=239  Identities=18%  Similarity=0.148  Sum_probs=143.2

Q ss_pred             cceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCC---c-------cCcccCCCCCCCEEECcCCCCCCCCc
Q 011101          174 KAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTK---S-------IPKMTSKLKFLYELDVSNNKLFGGFP  242 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~---~-------~p~~~~~l~~L~~L~Ls~n~l~~~~p  242 (493)
                      ..++.+|||||.|..+. ..+-..+.+-.+|+..+++.-....   .       +...+-+|++|+..+||.|.|....+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            46788888888877521 0123345566677777776532211   1       22345677888888888887765444


Q ss_pred             c----cccCCCCCcEEEcccccCCCCCCcccc--------------ccccCEEEccCccCCCCccccccccccchhhccc
Q 011101          243 M----EVVNIKNLTFLDLRFNSFSGPVPAEIF--------------YLDLDVLFLNNNKFSQNLPENIGSTGALYVTFAN  304 (493)
Q Consensus       243 ~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~--------------~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~  304 (493)
                      .    .+.+-+.|++|.|++|.+...--..++              ...|++.....|++.. .+...            
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~------------  176 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKEL------------  176 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHH------------
Confidence            3    345567788888888876522111111              1156666666666541 11000            


Q ss_pred             CcCCCCCchhhhhhhhhHHHHhccccccCCC-----cccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcc
Q 011101          305 NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL-----PYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLA  375 (493)
Q Consensus       305 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls  375 (493)
                            .-..+..-.+|+++.+..|.|...-     -..+..+++|+.|||.+|.++-.    +...+..++.|+.|.+.
T Consensus       177 ------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         177 ------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             ------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence                  0011222235666666667665321     12235678999999999998732    23345566779999999


Q ss_pred             cCCCCCCcchhh------cCCCCCcEEeeeCCcCCCC-Cc-----cc--cCCCCCCEEEeeCCcCCCCCC
Q 011101          376 MNQFYGPVPEIV------CQLPKLVNLSLSYNYFTQV-GP-----EC--RKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       376 ~N~l~~~~p~~l------~~l~~L~~L~Ls~N~l~~~-~~-----~~--~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      +|-++.....++      ...++|..|.+.+|.+.+- +.     .+  ..++-|..|.+.+|+|+...+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d  320 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELAD  320 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHH
Confidence            998875443332      1357889999999988762 11     12  457777888888999887653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.1e-08  Score=95.52  Aligned_cols=178  Identities=19%  Similarity=0.108  Sum_probs=102.4

Q ss_pred             cCcEEEccCCcCCCc-cCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccccc-CCCCCCccccc--cccCEE
Q 011101          202 DLAIFHANSNNFTKS-IPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNS-FSGPVPAEIFY--LDLDVL  277 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~--~~L~~L  277 (493)
                      .|++|||+...|+.. +-.-++.|.+|+.|.|.++++.+.+...+..-.+|+.|+|+.+. |+...-..+..  ..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            577777777777632 22335667777777777777776666677777777777777654 33111111111  167777


Q ss_pred             EccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc---CCCcccccCCCCCcEEEecCCC
Q 011101          278 FLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT---GCLPYEIGFLSNSTVFDVGNNR  354 (493)
Q Consensus       278 ~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~  354 (493)
                      +|+.|.+....-..+-                   ..++  .+|..|+|+++.-.   ..+..-...+++|..|||++|.
T Consensus       266 NlsWc~l~~~~Vtv~V-------------------~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAV-------------------AHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHH-------------------hhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            7777766532211000                   0000  23444444443211   1111122467788888888764


Q ss_pred             -CCCCCcccccCCCCCCEEEcccCCCCCCcchh---hcCCCCCcEEeeeCCc
Q 011101          355 -LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI---VCQLPKLVNLSLSYNY  402 (493)
Q Consensus       355 -l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~  402 (493)
                       ++......|..++.|++|.++.|..  ++|..   +...++|.+||+.++-
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence             4544445566778888888888864  45554   3556788888887763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=4.8e-08  Score=81.26  Aligned_cols=111  Identities=23%  Similarity=0.275  Sum_probs=89.8

Q ss_pred             hhhHHHHhccccccCCCc---ccccCCCCCcEEEecCCCCCCCCccccc-CCCCCCEEEcccCCCCCCcchhhcCCCCCc
Q 011101          319 KYLLEVLFLNNFFTGCLP---YEIGFLSNSTVFDVGNNRLTGPIPHSFG-CLSSMQYLNLAMNQFYGPVPEIVCQLPKLV  394 (493)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  394 (493)
                      ..+..++|++|.+. .++   ..+.....|+..+|++|.+. .+|..|. ..+.++.|+|++|+|+ .+|..+..++.|+
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            34566677777665 233   33455567888899999999 6777665 4458999999999998 6788899999999


Q ss_pred             EEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC
Q 011101          395 NLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       395 ~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      .|+++.|.|...+..+..+.+|..|+..+|.+..+|.+
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            99999999999988888899999999999999998854

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=1.1e-06  Score=82.34  Aligned_cols=204  Identities=20%  Similarity=0.181  Sum_probs=100.7

Q ss_pred             CCCcCcEEEccCCcCCC--ccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccc-ccc-cc
Q 011101          199 KLEDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI-FYL-DL  274 (493)
Q Consensus       199 ~l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~-~L  274 (493)
                      ..+.++.|||.+|.|+.  .+-..+.+++.|+.|+|+.|++...+-..-..+.+|+.|-|.+..+...--..+ ... .+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45567777777777763  222334567777777777777653332211345667777776665542221111 111 45


Q ss_pred             CEEEccCccCCCCccccccccccchhhcccCcCCCCCc--hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecC
Q 011101          275 DVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP--SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGN  352 (493)
Q Consensus       275 ~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  352 (493)
                      ++|.++.|.+..             +++..+.....-+  ..+.....+..++++-|++...       ++++..+.+..
T Consensus       149 telHmS~N~~rq-------------~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e  208 (418)
T KOG2982|consen  149 TELHMSDNSLRQ-------------LNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCE  208 (418)
T ss_pred             hhhhhccchhhh-------------hccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeec
Confidence            566666664331             1222222221100  1122233445555555555432       34555555666


Q ss_pred             CCCCCCC-cccccCCCCCCEEEcccCCCCCC-cchhhcCCCCCcEEeeeCCcCCCCCc-------cccCCCCCCEEEee
Q 011101          353 NRLTGPI-PHSFGCLSSMQYLNLAMNQFYGP-VPEIVCQLPKLVNLSLSYNYFTQVGP-------ECRKLIKRKVLDVR  422 (493)
Q Consensus       353 N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~l~~L~~L~L~  422 (493)
                      |.+...- -..+..++.+.-|+|+.|+|..- .-..+.+++.|..|.+++|.+.+-..       -+..++++++|+=+
T Consensus       209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            6554221 12333445555666776666421 12345566677777777776654211       23556666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=2.2e-07  Score=86.99  Aligned_cols=201  Identities=18%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             CCCcCcEEEccCCcCCCc--cCcccCCCCCCCEEECcCCCCCC--CCcccccCCCCCcEEEcccccCCCCCCccc-cccc
Q 011101          199 KLEDLAIFHANSNNFTKS--IPKMTSKLKFLYELDVSNNKLFG--GFPMEVVNIKNLTFLDLRFNSFSGPVPAEI-FYLD  273 (493)
Q Consensus       199 ~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~  273 (493)
                      .+..++.|.+.++.|...  ....-..++.+++|||.+|.|+.  .+...+.+|+.|++|+|++|.+...|...- -..+
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            344555667777776532  11112457889999999999974  344456789999999999999986554432 2338


Q ss_pred             cCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC--cccccCC-CCCcEEEe
Q 011101          274 LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL--PYEIGFL-SNSTVFDV  350 (493)
Q Consensus       274 L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l-~~L~~L~L  350 (493)
                      |+.|-|.+..+...                      .....+..++.+++|.++.|.+....  ....... +.+++|.+
T Consensus       123 l~~lVLNgT~L~w~----------------------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~  180 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWT----------------------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ  180 (418)
T ss_pred             eEEEEEcCCCCChh----------------------hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc
Confidence            99999988877532                      12234556677777777777443111  1111111 13333333


Q ss_pred             ---------cCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhcCCCCCcEEeeeCCcCCCC--CccccCCCCCCE
Q 011101          351 ---------GNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVNLSLSYNYFTQV--GPECRKLIKRKV  418 (493)
Q Consensus       351 ---------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~  418 (493)
                               +-|++..       .++++..+.+..|.+...- ......++.+..|+|+.|+|.+.  ...+.+++.|..
T Consensus       181 ~~c~~~~w~~~~~l~r-------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d  253 (418)
T KOG2982|consen  181 LPCLEQLWLNKNKLSR-------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD  253 (418)
T ss_pred             CCcHHHHHHHHHhHHh-------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence                     3334432       2357788888888775332 23345567888999999999885  347889999999


Q ss_pred             EEeeCCcCCC
Q 011101          419 LDVRMNCILD  428 (493)
Q Consensus       419 L~L~~N~l~~  428 (493)
                      |.+++|.|.+
T Consensus       254 lRv~~~Pl~d  263 (418)
T KOG2982|consen  254 LRVSENPLSD  263 (418)
T ss_pred             eeccCCcccc
Confidence            9999998865

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=5.6e-08  Score=80.88  Aligned_cols=107  Identities=18%  Similarity=0.326  Sum_probs=70.9

Q ss_pred             hhhcccCcCCCCCchhhhhhh---hhHHHHhccccccCCCcccc-cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEc
Q 011101          299 YVTFANNEFTGPIPSSIGRAK---YLLEVLFLNNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL  374 (493)
Q Consensus       299 ~L~l~~n~l~~~~p~~l~~l~---~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  374 (493)
                      .++|++|.+. .+++....+.   .|...+|++|.+. .+|..| ..++.+++|+|++|.|+ .+|..+..++.|+.|++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            3444444443 3444444333   3444577777777 344444 34457788888888888 67777888888888888


Q ss_pred             ccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcc
Q 011101          375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE  409 (493)
Q Consensus       375 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~  409 (493)
                      +.|.+. ..|..+..+.+|..||..+|.+..++.+
T Consensus       108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            888887 5667777777888888888887777554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=1.5e-06  Score=58.60  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=17.0

Q ss_pred             CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101          368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       368 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      +|++|+|++|+|+ .++..++++++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            3455555555554 334344455555555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=7e-06  Score=55.34  Aligned_cols=38  Identities=34%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             CCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC
Q 011101          392 KLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       392 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      +|++|++++|+|+.+++.+.++++|+.|++++|.|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555544455555555555555555544

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.00  E-value=1e-05  Score=54.38  Aligned_cols=39  Identities=31%  Similarity=0.758  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCCC---CCCCCCCCceeec
Q 011101          127 QLAFKVIQRFKKRITYDPQGIANTWMG---PDVCNKYKGFVCD  166 (493)
Q Consensus       127 ~~~~~~L~~~k~~~~~d~~~~~~~W~~---~~~C~~w~gv~c~  166 (493)
                      ..++++|+.||.++..++.+.+.+|..   .++| +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-eeccEEeC
Confidence            467899999999998888889999994   5788 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.87  E-value=1.5e-06  Score=80.45  Aligned_cols=222  Identities=19%  Similarity=0.160  Sum_probs=145.5

Q ss_pred             hhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----C-------cccccCCCCCcEEEcccc
Q 011101          195 DFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----F-------PMEVVNIKNLTFLDLRFN  259 (493)
Q Consensus       195 ~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~-------p~~l~~l~~L~~L~Ls~n  259 (493)
                      ..+..+..++.++|++|.|...    +...+.+-.+|+..+++.-.. |.    +       -..+..++.|+..+||.|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            4466688999999999999754    334456678899999886432 32    2       234567899999999999


Q ss_pred             cCCCCCCcccccc-----ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          260 SFSGPVPAEIFYL-----DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       260 ~l~~~~p~~~~~~-----~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      .|....+..+...     .|++|.|++|.+.-.--..++.   -...+..|+-       ..+-+.|+.+....|++...
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~la~nKK-------aa~kp~Le~vicgrNRleng  172 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHLAYNKK-------AADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHHHHHhh-------hccCCCceEEEeccchhccC
Confidence            9987777665432     8999999999875221111111   1112222221       12334566666677766532


Q ss_pred             Cc----ccccCCCCCcEEEecCCCCCCC-----CcccccCCCCCCEEEcccCCCCCCc----chhhcCCCCCcEEeeeCC
Q 011101          335 LP----YEIGFLSNSTVFDVGNNRLTGP-----IPHSFGCLSSMQYLNLAMNQFYGPV----PEIVCQLPKLVNLSLSYN  401 (493)
Q Consensus       335 ~p----~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N  401 (493)
                      -.    ..+..-.+|+++.+..|.|.-.     +-..+..+++|+.|||.+|-++-..    ...++.++.|+.|.+.+|
T Consensus       173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            11    1122235899999999998733     1123446789999999999887432    344566778999999999


Q ss_pred             cCCCCCc-----cc--cCCCCCCEEEeeCCcCC
Q 011101          402 YFTQVGP-----EC--RKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       402 ~l~~~~~-----~~--~~l~~L~~L~L~~N~l~  427 (493)
                      -++.-..     .|  ...++|..|-..+|.+.
T Consensus       253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            8886432     12  34678888888888654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00011  Score=73.87  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=51.4

Q ss_pred             hhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccc-cCCCCCCcccccccc
Q 011101          196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN-SFSGPVPAEIFYLDL  274 (493)
Q Consensus       196 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~L  274 (493)
                      .+..+.+++.|++++|.++ .+|.   --.+|++|+++++.-...+|..+  ..+|++|++++| .+. .+|.     +|
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-----sL  114 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-----SV  114 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-----cc
Confidence            3566788999999999887 3452   23469999998754434566544  257888888888 443 4443     56


Q ss_pred             CEEEccCccC
Q 011101          275 DVLFLNNNKF  284 (493)
Q Consensus       275 ~~L~L~~n~l  284 (493)
                      +.|+++.+..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777665543

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=97.73  E-value=7.1e-06  Score=78.28  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             CCCCCcccchhHHHHHHHHHHHHHHhhhceeeeccchhh
Q 011101            2 HMMKKKAKMGTNIIVYFLCAFTLILHSSLHYEVAAGDVV   40 (493)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (493)
                      |++|++||||   |+++|.+|++|++.||||+.+|+|+.
T Consensus       295 q~lg~~veme---ia~~leen~sllk~gy~fe~~gpr~~  330 (353)
T KOG3735|consen  295 QVLGNAVEME---IALELEENASLLKFGYHFEQQGPRER  330 (353)
T ss_pred             hhcccHHHHH---HHHHHHhcccccccccccCCCCCchh
Confidence            8999999999   99999999999999999999999995

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=8.7e-05  Score=74.46  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=43.5

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCC-CCCCCCcccccCCCCCc
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNN-KLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~  252 (493)
                      .+++.|+++++.++.    +|.   -..+|++|.++++.--..+|..+  ..+|++|++++| .+ ..+|      .+|+
T Consensus        52 ~~l~~L~Is~c~L~s----LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP------~sLe  115 (426)
T PRK15386         52 RASGRLYIKDCDIES----LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLP------ESVR  115 (426)
T ss_pred             cCCCEEEeCCCCCcc----cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccc------cccc
Confidence            457778888777766    441   12357788887754434555444  256788888877 44 2344      3466


Q ss_pred             EEEcccccC
Q 011101          253 FLDLRFNSF  261 (493)
Q Consensus       253 ~L~Ls~n~l  261 (493)
                      .|+++++..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            677766554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=5.8e-05  Score=67.33  Aligned_cols=103  Identities=20%  Similarity=0.106  Sum_probs=70.3

Q ss_pred             hhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhcCCCCCcEEee
Q 011101          320 YLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVNLSL  398 (493)
Q Consensus       320 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L  398 (493)
                      ....+||++|.+..  -..|..+..|.+|.|++|+|+..-|..-..+++|+.|.|.+|.|.... -.-+..+++|+.|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            34567777777763  235667788888888888888555554445677888888888776321 122556778888888


Q ss_pred             eCCcCCCCC----ccccCCCCCCEEEeeCC
Q 011101          399 SYNYFTQVG----PECRKLIKRKVLDVRMN  424 (493)
Q Consensus       399 s~N~l~~~~----~~~~~l~~L~~L~L~~N  424 (493)
                      -+|.++...    -.+..+++|+.||...=
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            888877642    24677888888887643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=4.2e-05  Score=82.81  Aligned_cols=181  Identities=17%  Similarity=0.174  Sum_probs=95.1

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcc---------c------CCCCCCCEEECcCCCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKM---------T------SKLKFLYELDVSNNKLF  238 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~---------~------~~l~~L~~L~Ls~n~l~  238 (493)
                      -+++.+++.+.....   ..-..+.+.. |++|.|.+-......-..         +      ..-.+|++||+++....
T Consensus        60 f~ltki~l~~~~~~~---~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~  135 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQH---QTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF  135 (699)
T ss_pred             heeEEeeccceecch---hHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence            457777777766655   3333344444 666666554332110000         0      01145666666664432


Q ss_pred             CC-Ccccc-cCCCCCcEEEcccccCCCCCCccccc--cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchh
Q 011101          239 GG-FPMEV-VNIKNLTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS  314 (493)
Q Consensus       239 ~~-~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~  314 (493)
                      .. -+..+ ..|++|+.|.+++-.+...--..+..  .+|..||+|+++++                       ..  ..
T Consensus       136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----------------------nl--~G  190 (699)
T KOG3665|consen  136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----------------------NL--SG  190 (699)
T ss_pred             hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----------------------Cc--HH
Confidence            11 11112 23566666666654443211001111  15556666555554                       22  56


Q ss_pred             hhhhhhhHHHHhccccccC-CCcccccCCCCCcEEEecCCCCCCCC------cccccCCCCCCEEEcccCCCCCCc
Q 011101          315 IGRAKYLLEVLFLNNFFTG-CLPYEIGFLSNSTVFDVGNNRLTGPI------PHSFGCLSSMQYLNLAMNQFYGPV  383 (493)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~~  383 (493)
                      ++++++|+.|.+.+-.+.. ..-..+.++++|+.||+|.......-      -+.-..+++|+.||.|++.+.+.+
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            7888889998888777663 22245677888888888887655211      112224667777777776665433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.00013  Score=65.18  Aligned_cols=88  Identities=23%  Similarity=0.251  Sum_probs=72.4

Q ss_pred             CCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--cccCCCCCCEE
Q 011101          342 LSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVL  419 (493)
Q Consensus       342 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L  419 (493)
                      +.+...+||++|.+. .+ ..|..+..|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|.|..+..  -+..+++|++|
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            356788999999998 33 357788999999999999997666655557889999999999988643  56789999999


Q ss_pred             EeeCCcCCCCCC
Q 011101          420 DVRMNCILDLPN  431 (493)
Q Consensus       420 ~L~~N~l~~lp~  431 (493)
                      .+-+|.++....
T Consensus       119 tll~Npv~~k~~  130 (233)
T KOG1644|consen  119 TLLGNPVEHKKN  130 (233)
T ss_pred             eecCCchhcccC
Confidence            999999887554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.33  E-value=7.2e-05  Score=81.02  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=79.3

Q ss_pred             hhhhHHHHhccccccCC-CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC-CcchhhcCCCCCcE
Q 011101          318 AKYLLEVLFLNNFFTGC-LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVN  395 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~  395 (493)
                      +++|+.|.+.+-.+... +-....++++|..||+|+.+++. + ..++++++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            47788888877666432 22344678999999999999983 3 678889999999988866653 22345778999999


Q ss_pred             EeeeCCcCCCCCc-------cccCCCCCCEEEeeCCcCCC
Q 011101          396 LSLSYNYFTQVGP-------ECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       396 L~Ls~N~l~~~~~-------~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ||+|..+......       .-..+++|+.||.+++.+..
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            9999976655321       12458899999999776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.32  E-value=0.00012  Score=67.97  Aligned_cols=101  Identities=20%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             hhhhhHHHHhccccccCCCcccccCCCCCcEEEecCC--CCCCCCcccccCCCCCCEEEcccCCCCCCcchh---hcCCC
Q 011101          317 RAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN--RLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI---VCQLP  391 (493)
Q Consensus       317 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~  391 (493)
                      .+..|+.|.+.+..++..  ..|-.+++|+.|+++.|  .+.+.+.-....+++|++|+|++|+|..  ...   +..+.
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence            344556666666665532  23455677777777777  5555555455556777888888877762  222   34456


Q ss_pred             CCcEEeeeCCcCCCCCc----cccCCCCCCEEEe
Q 011101          392 KLVNLSLSYNYFTQVGP----ECRKLIKRKVLDV  421 (493)
Q Consensus       392 ~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~L  421 (493)
                      +|..||+.+|..+....    .|.-+++|++||-
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            67777777777666422    3455666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00032  Score=65.21  Aligned_cols=96  Identities=23%  Similarity=0.206  Sum_probs=73.4

Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccC--CCCCCcchhhcCCCCCcEEeeeCCcCCCC--Cccc
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN--QFYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPEC  410 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~  410 (493)
                      +......+..|+.|++.+..++. + ..|-.|++|+.|.++.|  ++.+.+.-....+++|++|++++|+|..+  ...+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            44445566788888888887772 2 34567889999999999  66666655556679999999999999863  3356


Q ss_pred             cCCCCCCEEEeeCCcCCCCCCC
Q 011101          411 RKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       411 ~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      ..+.+|..|++.+|..+.+-+.
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dy  134 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDY  134 (260)
T ss_pred             hhhcchhhhhcccCCccccccH
Confidence            7888999999999988886544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.0002  Score=67.01  Aligned_cols=100  Identities=17%  Similarity=0.075  Sum_probs=75.7

Q ss_pred             hhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhcCCCCCcE
Q 011101          317 RAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVCQLPKLVN  395 (493)
Q Consensus       317 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~  395 (493)
                      .+.+.++|++.++.++.+  .....++.|++|.|+-|+|+. + ..|..+++|++|+|..|.|...- -..+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            456778888888888742  234678899999999999983 3 35678899999999999997431 234678899999


Q ss_pred             EeeeCCcCCCCC-c-----cccCCCCCCEEE
Q 011101          396 LSLSYNYFTQVG-P-----ECRKLIKRKVLD  420 (493)
Q Consensus       396 L~Ls~N~l~~~~-~-----~~~~l~~L~~L~  420 (493)
                      |.|..|.-.+.. .     .+..+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998876642 2     356788888775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.91  E-value=0.00035  Score=68.91  Aligned_cols=274  Identities=14%  Similarity=0.064  Sum_probs=154.3

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcC-CCccCcc-cCCCCCCCEEECcCC-CCCCCCcc-cccCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNF-TKSIPKM-TSKLKFLYELDVSNN-KLFGGFPM-EVVNIK  249 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i-~~~~p~~-~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~  249 (493)
                      ..++.|.++|..-.+. -.+-.....++++++|++.++.. +...-.. -..+.+|++|+|..| .++...-. -..+++
T Consensus       138 g~lk~LSlrG~r~v~~-sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGD-SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCc-chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            5678888888764431 02334456788899998888763 3221112 245788999999884 44432222 224688


Q ss_pred             CCcEEEccccc-CCCCCCcccc--ccccCEEEccCccCCCCcccccccc-----ccchhhcccCcCCCCCc--hhhhhhh
Q 011101          250 NLTFLDLRFNS-FSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENIGST-----GALYVTFANNEFTGPIP--SSIGRAK  319 (493)
Q Consensus       250 ~L~~L~Ls~n~-l~~~~p~~~~--~~~L~~L~L~~n~l~~~~p~~~~~~-----~~l~L~l~~n~l~~~~p--~~l~~l~  319 (493)
                      +|++|+++++. +++..-..+.  ...++.+.+.+|.=.  .-+.+...     ..+.+++..|.......  ..-..+.
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            99999999885 4431111111  114555655544311  11122111     12255555553221111  1112356


Q ss_pred             hhHHHHhccccccCCCc--ccccCCCCCcEEEecCCC-CCCCCcccc-cCCCCCCEEEcccCCCCCC--cchhhcCCCCC
Q 011101          320 YLLEVLFLNNFFTGCLP--YEIGFLSNSTVFDVGNNR-LTGPIPHSF-GCLSSMQYLNLAMNQFYGP--VPEIVCQLPKL  393 (493)
Q Consensus       320 ~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L  393 (493)
                      .|+.|+.+++...+..+  .-..+..+|++|-++.++ ++..-...+ .+...|+.+++..+.....  +...-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            78889888765532211  122466899999999887 332222222 2567899999988865321  22222456889


Q ss_pred             cEEeeeCCcCC-CC-Cc----cccCCCCCCEEEeeCCcCCCCCCCCCchhhcccccCCCCCCCCCCCcccCCC
Q 011101          394 VNLSLSYNYFT-QV-GP----ECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCA  460 (493)
Q Consensus       394 ~~L~Ls~N~l~-~~-~~----~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~  460 (493)
                      +.|.|+++.+. +. +.    .-..+..|..+.|++.....-          ..+.....|.++++..+++|.
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----------~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----------ATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH----------HHHHHHhhCcccceeeeechh
Confidence            99999988643 32 11    124466788888887754331          122334678888888888885

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.77  E-value=8.2e-05  Score=77.17  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             hHHHHhccccccCC----CcccccCC-CCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCC
Q 011101          321 LLEVLFLNNFFTGC----LPYEIGFL-SNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFY  380 (493)
Q Consensus       321 L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  380 (493)
                      +.+|++.+|.+...    +...+..+ ..+++++++.|.|+..    +...+..+..+++|.++.|.+.
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            45566666665532    11222333 4455666666665532    2223334445566666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.00051  Score=64.31  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=68.9

Q ss_pred             CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--cccCCCCCCE
Q 011101          341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKV  418 (493)
Q Consensus       341 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~  418 (493)
                      .+.+.+.|++.++.+.+ + .....|+.|+.|.||-|+|+..-  .+..+++|++|.|+.|.|.++..  .+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            35678899999999984 2 24458899999999999998543  36778999999999999998743  5789999999


Q ss_pred             EEeeCCcCCC
Q 011101          419 LDVRMNCILD  428 (493)
Q Consensus       419 L~L~~N~l~~  428 (493)
                      |.|..|.=.+
T Consensus        93 LWL~ENPCc~  102 (388)
T KOG2123|consen   93 LWLDENPCCG  102 (388)
T ss_pred             HhhccCCccc
Confidence            9999996444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.75  E-value=0.00017  Score=74.91  Aligned_cols=181  Identities=18%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             CCCCEEECcCCCCCCCC----cccccCCCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCcc----c
Q 011101          225 KFLYELDVSNNKLFGGF----PMEVVNIKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLP----E  290 (493)
Q Consensus       225 ~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p----~  290 (493)
                      ..|..|.|.+|.+....    ...+..+..|+.|++++|.+.+..-..+..      ..+++|++..|.+++..-    .
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            34778888888886432    234556788888889888887332222111      156667777777664322    2


Q ss_pred             cccccccc-hhhcccCcCCC----CCchhhh----hhhhhHHHHhccccccCCC----cccccCCCC-CcEEEecCCCCC
Q 011101          291 NIGSTGAL-YVTFANNEFTG----PIPSSIG----RAKYLLEVLFLNNFFTGCL----PYEIGFLSN-STVFDVGNNRLT  356 (493)
Q Consensus       291 ~~~~~~~l-~L~l~~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~  356 (493)
                      .+.....+ .++++.|.+..    .++..+.    ...++++|.+.+|.++...    ...+..... +..|++..|++.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            22222223 55566555531    1122222    2445566666665554211    112223333 444555555555


Q ss_pred             CC----CcccccCC-CCCCEEEcccCCCCCCcc----hhhcCCCCCcEEeeeCCcCCC
Q 011101          357 GP----IPHSFGCL-SSMQYLNLAMNQFYGPVP----EIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       357 ~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      +.    +...+..+ ..++.++++.|.|+....    ..+..+..++.|.+++|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            32    11222233 344555555555553322    223334455555555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.51  E-value=0.011  Score=49.83  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCC
Q 011101          314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL  393 (493)
Q Consensus       314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  393 (493)
                      .|.++.+|+.+.+.. .+...-...|..+.+|+.+.+.++ +...-...|..+.+|+.+.+.+ .+.......+..+.+|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555666666653 344344456667777777777765 5534445566666777777765 3332333455567777


Q ss_pred             cEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCC
Q 011101          394 VNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       394 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      +.+++..+ +..+.. .|... +|+.+.+.. .++.++
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~  118 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE  118 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence            77777654 554433 44555 777777664 444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.27  E-value=0.038  Score=46.36  Aligned_cols=59  Identities=17%  Similarity=0.070  Sum_probs=19.7

Q ss_pred             hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcc
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR  257 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  257 (493)
                      |..+.+|+.+.+.. .+...-...|.++.+|+.+.+..+ +.......|.++.+|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            33344444444432 233222333444444444444443 332223334444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.83  E-value=0.011  Score=33.17  Aligned_cols=11  Identities=36%  Similarity=0.664  Sum_probs=4.2

Q ss_pred             CEEEcccCCCC
Q 011101          370 QYLNLAMNQFY  380 (493)
Q Consensus       370 ~~L~Ls~N~l~  380 (493)
                      ++|+|++|+|+
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.77  E-value=0.017  Score=30.17  Aligned_cols=16  Identities=31%  Similarity=0.513  Sum_probs=6.8

Q ss_pred             CCCEEEeeCCcCCCCC
Q 011101          415 KRKVLDVRMNCILDLP  430 (493)
Q Consensus       415 ~L~~L~L~~N~l~~lp  430 (493)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555543

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.55  E-value=0.017  Score=32.33  Aligned_cols=19  Identities=42%  Similarity=0.534  Sum_probs=9.2

Q ss_pred             CcEEEccCCcCCCccCcccC
Q 011101          203 LAIFHANSNNFTKSIPKMTS  222 (493)
Q Consensus       203 L~~L~L~~n~i~~~~p~~~~  222 (493)
                      |++|||++|+|+ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.22  E-value=0.001  Score=60.77  Aligned_cols=89  Identities=25%  Similarity=0.252  Sum_probs=75.4

Q ss_pred             ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCC
Q 011101          337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR  416 (493)
Q Consensus       337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L  416 (493)
                      ..+......+.||++.|++. .+-..|.-++.|..|+++.|.+. .+|.++..+..+..+++..|..+..|.++...+.+
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence            34566788899999999887 45566777788999999999987 78888888888999999999999999899999999


Q ss_pred             CEEEeeCCcCC
Q 011101          417 KVLDVRMNCIL  427 (493)
Q Consensus       417 ~~L~L~~N~l~  427 (493)
                      +.+++..|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99999988753

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.86  E-value=0.016  Score=60.53  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=14.9

Q ss_pred             CCcCcEEEccCCcCCCc--cCcccCCCCCCCEEECcC
Q 011101          200 LEDLAIFHANSNNFTKS--IPKMTSKLKFLYELDVSN  234 (493)
Q Consensus       200 l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~  234 (493)
                      ++.|+.|.+..+.-...  +-.....+.+|++|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            44555555544422211  112234445555555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.29  E-value=0.053  Score=28.24  Aligned_cols=15  Identities=40%  Similarity=0.470  Sum_probs=6.4

Q ss_pred             CCcEEeeeCCcCCCC
Q 011101          392 KLVNLSLSYNYFTQV  406 (493)
Q Consensus       392 ~L~~L~Ls~N~l~~~  406 (493)
                      +|+.|+|++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555543

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.28  E-value=0.013  Score=53.69  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=45.3

Q ss_pred             hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCC
Q 011101          299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ  378 (493)
Q Consensus       299 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  378 (493)
                      .||++.|.+. .+-..|..++.|+.|+++.|.+. .+|..++.+..++.+++..|.++ ..|.+++..++++++++-+|.
T Consensus        46 vld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   46 VLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             eehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            3444444433 23344555666666666666655 45566666666666666666665 566666666666666666665


Q ss_pred             CC
Q 011101          379 FY  380 (493)
Q Consensus       379 l~  380 (493)
                      ++
T Consensus       123 ~~  124 (326)
T KOG0473|consen  123 FF  124 (326)
T ss_pred             ch
Confidence            54

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.70  E-value=0.11  Score=54.20  Aligned_cols=108  Identities=15%  Similarity=-0.026  Sum_probs=51.1

Q ss_pred             hhhhHHHHhccccccCC--CcccccCCCCCcEEEecCC-CCCCCC----cccccCCCCCCEEEcccCC-CCCCcchhhcC
Q 011101          318 AKYLLEVLFLNNFFTGC--LPYEIGFLSNSTVFDVGNN-RLTGPI----PHSFGCLSSMQYLNLAMNQ-FYGPVPEIVCQ  389 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N-~l~~~~----p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~  389 (493)
                      .+.|+.|.+.++.-...  +-.....+..|+.|+++++ ......    ......+.+|+.|+++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            34555555555433222  2223344556666666552 111011    1122334566666666665 44433333332


Q ss_pred             -CCCCcEEeeeCCc-CCCC--CccccCCCCCCEEEeeCCc
Q 011101          390 -LPKLVNLSLSYNY-FTQV--GPECRKLIKRKVLDVRMNC  425 (493)
Q Consensus       390 -l~~L~~L~Ls~N~-l~~~--~~~~~~l~~L~~L~L~~N~  425 (493)
                       +++|+.|.+.++. +++.  ......+++|++|+++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence             5566666665555 4432  1223455566666666543

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=90.07  E-value=1.2  Score=45.26  Aligned_cols=9  Identities=0%  Similarity=0.080  Sum_probs=5.1

Q ss_pred             HHhhhceee
Q 011101           25 ILHSSLHYE   33 (493)
Q Consensus        25 ~~~~~~~~~   33 (493)
                      +||.+++..
T Consensus       291 fi~~fi~k~  299 (569)
T KOG3671|consen  291 FIYDFIQKN  299 (569)
T ss_pred             ccccchhcC
Confidence            455666655

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.70  E-value=0.28  Score=28.48  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=16.5

Q ss_pred             CCCCCEEEeeCCcCCCCCCC
Q 011101          413 LIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       413 l~~L~~L~L~~N~l~~lp~~  432 (493)
                      +++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46788999999999998864

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.70  E-value=0.28  Score=28.48  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=16.5

Q ss_pred             CCCCCEEEeeCCcCCCCCCC
Q 011101          413 LIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       413 l~~L~~L~L~~N~l~~lp~~  432 (493)
                      +++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46788999999999998864

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=89.65  E-value=0.44  Score=48.31  Aligned_cols=223  Identities=13%  Similarity=0.041  Sum_probs=102.7

Q ss_pred             cCcEEEccCCcCCCccCcccCC---CCCCCEEECcCCCCC---CCCcccccCCCCCcEEEcccccCCCC----CCccccc
Q 011101          202 DLAIFHANSNNFTKSIPKMTSK---LKFLYELDVSNNKLF---GGFPMEVVNIKNLTFLDLRFNSFSGP----VPAEIFY  271 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~~p~~~~~---l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~  271 (493)
                      .+++++|+.|.....++..+..   -..|+.++.+...+.   +..+-..+.-++|++.+++.|..+..    ++.....
T Consensus       215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~  294 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD  294 (553)
T ss_pred             cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence            3455555555555444433221   123455555544432   11122223345666666666654421    1211111


Q ss_pred             ---c--ccCEEEccCccCCCCccccc-----cccc--cchhhcccCcCCCCC-chhhhhhhhhHHHHhccccccCCCcc-
Q 011101          272 ---L--DLDVLFLNNNKFSQNLPENI-----GSTG--ALYVTFANNEFTGPI-PSSIGRAKYLLEVLFLNNFFTGCLPY-  337 (493)
Q Consensus       272 ---~--~L~~L~L~~n~l~~~~p~~~-----~~~~--~l~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-  337 (493)
                         .  ++ +|++..+.....-+..+     .+-.  -.++++..|...+.- -..-.+-.++++|.+.+|.+.+..-. 
T Consensus       295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v  373 (553)
T KOG4242|consen  295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV  373 (553)
T ss_pred             ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence               1  44 55555554432222111     0001  125566655443211 11111123477788888877765433 


Q ss_pred             -cccCCCCCcEEEecCCCCC-----CCCccccc----CCCCCCEEEcccCCCCCCcch---hhcCCCCCcEEeeeCCcCC
Q 011101          338 -EIGFLSNSTVFDVGNNRLT-----GPIPHSFG----CLSSMQYLNLAMNQFYGPVPE---IVCQLPKLVNLSLSYNYFT  404 (493)
Q Consensus       338 -~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~  404 (493)
                       .+..-++++.+++..-.-.     +....-+.    ...-+..++++.|.+....-.   .+..-+.+..|++++|...
T Consensus       374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg  453 (553)
T KOG4242|consen  374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG  453 (553)
T ss_pred             cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence             2334456777766543221     11111111    112477888888887643322   2334467888999998876


Q ss_pred             CCC-----ccccCCCCCCEEEeeCCc
Q 011101          405 QVG-----PECRKLIKRKVLDVRMNC  425 (493)
Q Consensus       405 ~~~-----~~~~~l~~L~~L~L~~N~  425 (493)
                      ...     ........++.+..+.|.
T Consensus       454 d~gap~lpkalq~n~rlr~ipds~n~  479 (553)
T KOG4242|consen  454 DGGAPPLPKALQSNCRLRPIPDSLNL  479 (553)
T ss_pred             cCCCCcCccccCCCCccCCCCCCCCC
Confidence            532     123333344444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.40  E-value=0.36  Score=28.03  Aligned_cols=14  Identities=50%  Similarity=0.494  Sum_probs=7.5

Q ss_pred             CCCcEEEcccccCC
Q 011101          249 KNLTFLDLRFNSFS  262 (493)
Q Consensus       249 ~~L~~L~Ls~n~l~  262 (493)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.40  E-value=0.36  Score=28.03  Aligned_cols=14  Identities=50%  Similarity=0.494  Sum_probs=7.5

Q ss_pred             CCCcEEEcccccCC
Q 011101          249 KNLTFLDLRFNSFS  262 (493)
Q Consensus       249 ~~L~~L~Ls~n~l~  262 (493)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.05  E-value=0.38  Score=28.04  Aligned_cols=18  Identities=33%  Similarity=0.366  Sum_probs=15.2

Q ss_pred             CCCCEEEeeCCcCCCCCC
Q 011101          414 IKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       414 ~~L~~L~L~~N~l~~lp~  431 (493)
                      .+|+.|++++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            368889999999999986

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.53  E-value=0.16  Score=45.75  Aligned_cols=83  Identities=17%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc-CcccC-CCCCCCEEECcCC-CCCCCCcccccCCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI-PKMTS-KLKFLYELDVSNN-KLFGGFPMEVVNIKN  250 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~  250 (493)
                      ..++.+|-++..|..   .--+.+..++.++.|.+.++.--+.. -+.++ -..+|+.|+|++| +||..--..+..+++
T Consensus       101 ~~IeaVDAsds~I~~---eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMY---EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             ceEEEEecCCchHHH---HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            458899999988877   44556777888888888777543211 01122 3578889999876 466544455667788


Q ss_pred             CcEEEcccc
Q 011101          251 LTFLDLRFN  259 (493)
Q Consensus       251 L~~L~Ls~n  259 (493)
                      |+.|.|.+=
T Consensus       178 Lr~L~l~~l  186 (221)
T KOG3864|consen  178 LRRLHLYDL  186 (221)
T ss_pred             hHHHHhcCc
Confidence            888777653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.62  E-value=0.062  Score=48.40  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=13.9

Q ss_pred             CcEEEecCCCCCCCCcccccCCCCCCEEEcccC
Q 011101          345 STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN  377 (493)
Q Consensus       345 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  377 (493)
                      ++.+|-++..|..+--+.+.++..++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            344444444444333333444444444444444

>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis

Probab=83.03  E-value=8.7  Score=34.93  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.1

Q ss_pred             CCCCCcccc-hhHHHHHHHHHHH
Q 011101            2 HMMKKKAKM-GTNIIVYFLCAFT   23 (493)
Q Consensus         2 ~~~~~~~~~-~~~~~~~~~~~~~   23 (493)
                      |||+...|. ....||+|++.+.
T Consensus        93 hIy~~d~~v~d~~~lv~~ck~Fl  115 (205)
T PF12238_consen   93 HIYKEDSEVKDYNGLVKFCKDFL  115 (205)
T ss_pred             hccCcccccccHHHHHHHHHHHh
Confidence            999999998 8888999998654

Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.58  E-value=0.29  Score=27.84  Aligned_cols=13  Identities=31%  Similarity=0.468  Sum_probs=4.8

Q ss_pred             CCCEEEcccCCCC
Q 011101          368 SMQYLNLAMNQFY  380 (493)
Q Consensus       368 ~L~~L~Ls~N~l~  380 (493)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	493
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-17
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-17
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 27/282 (9%)
Query: 158 NKYKGFVCDVRPDIKKKA---VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT 214
           NK+ G +    PD    A   + G+D +G  F G   ++  F      L     +SNNF+
Sbjct: 276 NKFTGEI----PDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFS 328
Query: 215 KSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIK-NLTFLDLRFNSFSGPVPAEIFYL 272
             +P  T  K++ L  LD+S N+  G  P  + N+  +L  LDL  N+FSGP+   +   
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 273 ---DLDVLFLNNNKFSQNLP---ENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLF 326
               L  L+L NN F+  +P    N     +L+++F  N  +G IPSS+G    L ++  
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKL 446
Query: 327 LNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
             N   G +P E+ ++       +  N LTG IP      +++ +++L+ N+  G +P+ 
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 387 VCQLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVLDVRMN 424
           + +L  L  L LS N F+   P    +CR LI    LD+  N
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLI---WLDLNTN 545

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 37/191 (19%)
Query: 251 LTFLDLRFNSFSGPVP--------AEIFYLD--------------------LDVLFLNNN 282
           LT LDL  NS SGPV         + + +L+                    L+VL L+ N
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 283 KFS-QNLPENIGSTGA---LYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYE 338
             S  N+   + S G     ++  + N+ +G +  S       L+V   NNF TG +P+ 
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV-SSNNFSTG-IPF- 215
Query: 339 IGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL 398
           +G  S     D+  N+L+G    +    + ++ LN++ NQF GP+P +   L  L  LSL
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 273
Query: 399 SYNYFTQVGPE 409
           + N FT   P+
Sbjct: 274 AENKFTGEIPD 284

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 27/282 (9%)
Query: 158 NKYKGFVCDVRPDIKKKA---VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT 214
           NK+ G +    PD    A   + G+D +G  F G   ++  F      L     +SNNF+
Sbjct: 279 NKFTGEI----PDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFS 331
Query: 215 KSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIK-NLTFLDLRFNSFSGPVPAEIFYL 272
             +P  T  K++ L  LD+S N+  G  P  + N+  +L  LDL  N+FSGP+   +   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 273 ---DLDVLFLNNNKFSQNLP---ENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLF 326
               L  L+L NN F+  +P    N     +L+++F  N  +G IPSS+G    L ++  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKL 449
Query: 327 LNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI 386
             N   G +P E+ ++       +  N LTG IP      +++ +++L+ N+  G +P+ 
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 387 VCQLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVLDVRMN 424
           + +L  L  L LS N F+   P    +CR LI    LD+  N
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLI---WLDLNTN 548

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 251 LTFLDLRFNSFSGPV------------------------PAEIF----YLDLDVLFLNNN 282
           LT LDL  NS SGPV                        P ++        L+VL L+ N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 283 KFS-QNLPENIGSTGA---LYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYE 338
             S  N+   + S G     ++  + N+ +G +  S       L+V   NNF TG +P+ 
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV-SSNNFSTG-IPF- 218
Query: 339 IGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL 398
           +G  S     D+  N+L+G    +    + ++ LN++ NQF GP+P +   L  L  LSL
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276
Query: 399 SYNYFTQVGPE 409
           + N FT   P+
Sbjct: 277 AENKFTGEIPD 287

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 35/287 (12%)
Query: 150 TWM-GPDVCNK-YKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFH 207
           +W+   D CN+ + G +CD   D +   V  +D +G     P + +   L  L  L   +
Sbjct: 26  SWLPTTDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLY 82
Query: 208 ANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVP 266
               NN    IP   +KL  L+ L +++  + G  P  +  IK L  LD  +N+ SG +P
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 267 AEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALY--VTFANNEFTGPIPSS--------I 315
             I  L +L  +  + N+ S  +P++ GS   L+  +T + N  TG IP +        +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 316 GRAKYLLE----VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
             ++ +LE    VLF ++  T     +I    NS  FD+G            G   ++  
Sbjct: 203 DLSRNMLEGDASVLFGSDKNT----QKIHLAKNSLAFDLG----------KVGLSKNLNG 248
Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV 418
           L+L  N+ YG +P+ + QL  L +L++S+N      P+   L +  V
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	493
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-11
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-10
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-10
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-10
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-08
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-08
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-08
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-09
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-07
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-07
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-09
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	1e-07
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-09
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-07
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	9e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	6e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	3e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-08
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	9e-08
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	6e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	6e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	9e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-07
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	9e-07
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-04
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	1e-06
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	7e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	3e-06
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	2e-05
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	4e-05
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	3e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	5e-06
3a58_A	320	Exocyst complex component SEC3; protein complex, P	1e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	3e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	4e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	4e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	7e-06
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	8e-06
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	1e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	9e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	7e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	1e-05
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	8e-05
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	5e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	6e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	7e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	5e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	8e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	7e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	7e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-05
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	2e-05
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	3e-05
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	1e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	4e-05
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	5e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	5e-05
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	1e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	8e-05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	1e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	5e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2rkv_A	451	Trichothecene 3-O-acetyltransferase; BAHD superfam	1e-04
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	1e-04
2yjn_A	441	ERYCIII, glycosyltransferase; transferase, cytochr	1e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	1e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	1e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	5e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	6e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2es4_D	332	Lipase chaperone; protein-protein complex, steric	3e-04
2g5d_A	422	GNA33; hydrolase, beta barrel; 1.95A {Neisseria go	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2kfu_A	162	RV1827 PThr 22; FHA domain, phosphorylation, intra	5e-04
4fzr_A	398	SSFS6; structural genomics, PSI-biology, protein s	5e-04
2gj7_F	401	Glycoprotein E; FC receptor, low resolution, immun	6e-04
3tsa_A	391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	6e-04
3tsa_A	391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	7e-04
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	7e-04
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	7e-04
3oti_A	398	CALG3; calicheamicin, TDP, structural genomics, PS	7e-04
2e1v_A	454	Acyl transferase; BAHD superfamily, seleno-methion	7e-04
3otg_A	412	CALG1; calicheamicin, TDP, structural genomics, PS	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (474), Expect = 3e-55
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 13/275 (4%)

Query: 136 FKKRITYDPQGIANTWMGPDVCNKY-KGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLS 194
            KK +  +P  +++     D CN+   G +CD   D +   V  +D +G     P + + 
Sbjct: 14  IKKDLG-NPTTLSSWLPTTDCCNRTWLGVLCD--TDTQTYRVNNLDLSGLNLPKP-YPIP 69

Query: 195 DFLEKLEDLAIFH-ANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253
             L  L  L   +    NN    IP   +KL  L+ L +++  + G  P  +  IK L  
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL--YVTFANNEFTGP 310
           LD  +N+ SG +P  I  L +L  +  + N+ S  +P++ GS   L   +T + N  TG 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           IP +       L  + L  N   G      G   N+    +  N L   +    G   ++
Sbjct: 190 IPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
             L+L  N+ YG +P+ + QL  L +L++S+N   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (349), Expect = 3e-37
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 6/186 (3%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL-TF 253
           DFL +++ L     + N  + ++P   S L  L  +    N++ G  P    +   L T 
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP 312
           + +  N  +G +P     L+L  + L+ N    +     GS      +  A N     + 
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 313 SSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
             +G +K L   L L NN   G LP  +  L      +V  N L G IP   G L     
Sbjct: 239 K-VGLSKNL-NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV 295

Query: 372 LNLAMN 377
              A N
Sbjct: 296 SAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (265), Expect = 1e-25
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 8/169 (4%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYE-LDVSNNKLFGGFPMEVVNIKNLTFLD 255
           +  L +L     + N  + +IP        L+  + +S N+L G  P    N+ NL F+D
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS 314
           L  N   G          +   + L  N  + +L +   S     +   NN   G +P  
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 315 IGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDV-GNNRLTG-PIP 360
           + + K+L   L +  N   G +P + G L    V     N  L G P+P
Sbjct: 264 LTQLKFL-HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.5 bits (184), Expect = 6e-15
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
             S      ++    H   N+    + K+    K L  LD+ NN+++G  P  +  +K L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
             L++ FN+  G +P        DV    NNK
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (482), Expect = 9e-53
 Identities = 77/255 (30%), Positives = 116/255 (45%), Gaps = 27/255 (10%)

Query: 185 RFNG--PDFSLSDFLEKLEDLAIFHANSNNFTKSIPK-MTSKLKFLYELDVSNNKLFGGF 241
           +F G  P   L      L+ L++     N FT  IP  ++     L  LD+S N  +G  
Sbjct: 258 QFVGPIPPLPLK----SLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 242 PMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIG--STGA 297
           P    +   L  L L  N+FSG +P +       L VL L+ N+FS  LPE++   S   
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 298 LYVTFANNEFTGPIPSSIGR-AKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRL 355
           L +  ++N F+GPI  ++ +  K  L+ L+L NN FTG +P  +   S      +  N L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP------E 409
           +G IP S G LS ++ L L +N   G +P+ +  +  L  L L +N  T  G        
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT--GEIPSGLSN 488

Query: 410 CRKLIKRKVLDVRMN 424
           C  L     + +  N
Sbjct: 489 CTNLN---WISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  176 bits (448), Expect = 5e-48
 Identities = 62/224 (27%), Positives = 92/224 (41%), Gaps = 13/224 (5%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPK--MTSKLKFLYELDVSNNKLFGGFPMEVVNIK 249
           SL++    L  L +     NNF+  I      +    L EL + NN   G  P  + N  
Sbjct: 362 SLTNLSASLLTLDLSS---NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 250 NLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEF 307
            L  L L FN  SG +P+ +  L  L  L L  N     +P+ +     L  +    N+ 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL 366
           TG IPS +      L  + L NN  TG +P  IG L N  +  + NN  +G IP   G  
Sbjct: 479 TGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC 410
            S+ +L+L  N F G +P  + +        ++ N+        
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (422), Expect = 1e-44
 Identities = 63/280 (22%), Positives = 109/280 (38%), Gaps = 26/280 (9%)

Query: 135 RFKKRITYDPQGIANTW-MGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSL 193
            FK  +    + +   W    + C  + G  C          V  +D +    N    ++
Sbjct: 19  SFKDVL--PDKNLLPDWSSNKNPCT-FDGVTCRDD------KVTSIDLSSKPLNVGFSAV 69

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFP--MEVVNIKNL 251
           S  L  L  L     ++++   S+         L  LD+S N L G       + +   L
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 252 TFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGAL----YVTFANN 305
            FL++  N+   P           L+VL L+ N  S         +       ++  + N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 306 EFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG 364
           + +G +   + R   L E L + +N F+  +P  +G  S     D+  N+L+G    +  
Sbjct: 189 KISGDVD--VSRCVNL-EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 365 CLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
             + ++ LN++ NQF GP+P     L  L  LSL+ N FT
Sbjct: 245 TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  162 bits (412), Expect = 3e-43
 Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 27/249 (10%)

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG 239
             +     G    +   L    +L     ++N  T  IPK   +L+ L  L +SNN   G
Sbjct: 472 ILDFNDLTGE---IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 240 GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDV----------------------- 276
             P E+ + ++L +LDL  N F+G +PA +F     +                       
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 277 LFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL 335
              N  +F     E +            +  + G    +      ++ +    N  +G +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 336 PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVN 395
           P EIG +    + ++G+N ++G IP   G L  +  L+L+ N+  G +P+ +  L  L  
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 396 LSLSYNYFT 404
           + LS N  +
Sbjct: 709 IDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (347), Expect = 9e-35
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 13/206 (6%)

Query: 185 RFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPME 244
            F+G    +   L     L     N+N F  +IP    K        ++ N + G   + 
Sbjct: 525 SFSGN---IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVY 577

Query: 245 VVNIKNLTFLDLRFN--SFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYV- 300
           + N           N   F G    ++  L   +   + +  +  +      + G++   
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 301 TFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
             + N  +G IP  IG   YL  +L L +N  +G +P E+G L    + D+ +N+L G I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPE 385
           P +   L+ +  ++L+ N   GP+PE
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.0 bits (232), Expect = 3e-20
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF 238
              N   F G     S+ L +L      +  S  +             +  LD+S N L 
Sbjct: 589 GAGNLLEFQG---IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 239 GGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGA 297
           G  P E+ ++  L  L+L  N  SG +P E+  L  L++L L++NK    +P+ + +   
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 298 L-YVTFANNEFTGPIPSS 314
           L  +  +NN  +GPIP  
Sbjct: 706 LTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  141 bits (357), Expect = 2e-36
 Identities = 41/263 (15%), Positives = 93/263 (35%), Gaps = 33/263 (12%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL--------FGGFPMEVVNI 248
           L+ L D+ +++         +P     L  +  ++V+ N+               +    
Sbjct: 248 LKDLTDVEVYN---CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 249 KNLTFLDLRFNSF-SGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANN 305
           + +  + + +N+  + PV   +  +  L +L    N+         GS   L  +  A N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYN 363

Query: 306 EFTGPIPSSIGRAKYLLEVLFLNNFFTGCLP--YEIGFLSNSTVFDVGNNRLTG------ 357
           + T    +  G  + +  + F +N     +P  ++   +S  +  D   N +        
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 358 -PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR 416
            P+  +     ++  +NL+ NQ      E+      L +++L  N  T++     K    
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 417 --------KVLDVRMNCILDLPN 431
                     +D+R N +  L +
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (355), Expect = 5e-36
 Identities = 48/258 (18%), Positives = 86/258 (33%), Gaps = 26/258 (10%)

Query: 197 LEKLEDLAIFHANSNNFTK-SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
               E + I +   NN     +     K+K L  L+   N+L G  P    +   L  L+
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359

Query: 256 LRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPEN--IGSTGAL-YVTFANNEFTG- 309
           L +N  +  +PA        ++ L   +NK    +P      S   +  + F+ NE    
Sbjct: 360 LAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 310 ------PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG----- 357
                 P+  +  +   +   + L NN  +          S  +  ++  N LT      
Sbjct: 418 DGKNFDPLDPTPFKGINV-SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 358 --PIPHSFGCLSSMQYLNLAMNQFYGPVPEI-VCQLPKLVNLSLSYNYFTQVGPECRKLI 414
                 +F     +  ++L  N+      +     LP LV + LSYN F++   +     
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536

Query: 415 KRKVLDVRMNCILDLPNQ 432
             K   +R          
Sbjct: 537 TLKGFGIRNQRDAQGNRT 554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  131 bits (332), Expect = 4e-33
 Identities = 45/266 (16%), Positives = 82/266 (30%), Gaps = 35/266 (13%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTS--KLKFLYELDVSNNKL-------FGGFPME 244
           ++F    E +       N     IP +     +  +  +D S N++       F      
Sbjct: 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 245 VVNIKNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFS-------QNLPENIGST 295
                N++ ++L  N  S   P E+F     L  + L  N  +       ++  EN  +T
Sbjct: 429 PFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 296 GAL-YVTFANNEFTGPIPSSIGRAK-YLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGN 352
             L  +    N+ T  +           L  + L  N F+   P +    S    F + N
Sbjct: 488 YLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 353 ------NRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406
                 NR     P       S+  L +  N       +I    P +  L +  N    +
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISI 602

Query: 407 GPE-CRKLIKRKVLDVRMNCILDLPN 431
                   I+  +  +  +   D+  
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (312), Expect = 2e-30
 Identities = 25/245 (10%), Positives = 64/245 (26%), Gaps = 37/245 (15%)

Query: 222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGP----VPAEIFYLD-LDV 276
           +    +  L +      G  P  +  +  L  L L  +          P  I      + 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 277 LFLNNNKFSQNLPENIGSTGALYVT---FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG 333
                  + +   +         +      ++     I  S        ++  L+N  T 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 334 CLPYEIGFLSNSTVFDVGNNRLTGP-------------------IPHSFGCLSSMQYLNL 374
            +   +  L+    F +GN+                            +  L  +  + +
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG---------PECRKLIKRKVLDVRMNC 425
                   +P  +  LP++  ++++ N                +     K +++ +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 426 ILDLP 430
           +   P
Sbjct: 317 LKTFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (303), Expect = 3e-29
 Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 46/227 (20%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPME 244
            L     K  +++  + ++N  +K   ++ S    L  +++  N L              
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 245 VVNIKNLTFLDLRFNSFSGPVPAEIFYLD---LDVLFLNNNKFSQNLPENIGSTGALYVT 301
             N   LT +DLRFN  +  +  +        L  + L+ N FS+               
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK--------------- 527

Query: 302 FANNEFTGPIPSSIGRAKYLLEVLFL-------NNFFTGCLPYEIGFLSNSTVFDVGNNR 354
                     P+    +   L+   +        N      P  I    + T   +G+N 
Sbjct: 528 ---------FPTQPLNSST-LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
           +   +        ++  L++  N         VC   +     L Y+
Sbjct: 578 IRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 342 LSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP----VPEIVCQLPKLVNLS 397
               T   +     +G +P + G L+ ++ L L  +          P+ +          
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 398 LSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRS 434
               ++           +    D+  +CI   P Q+S
Sbjct: 140 KMRMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKS 174

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
           S      +  L+L      G VP+ + QL +L  L+L  +   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (322), Expect = 1e-31
 Identities = 50/265 (18%), Positives = 90/265 (33%), Gaps = 26/265 (9%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFPMEVVNIK 249
            L+D  +    + IF+   NN     P      K+  L  LD  +NK+            
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNV 595

Query: 250 NLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGA---LYVTFAN 304
            LT L L +N     +P +       ++ L  ++NK    +P    +        V F+ 
Sbjct: 596 KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSY 653

Query: 305 NEFTGP---IPSSIGRAKYL-LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLT--- 356
           N+       I  S+   K +    + L  N             S  +   + NN +T   
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 357 ----GPIPHSFGCLSSMQYLNLAMNQFYGPVPEI-VCQLPKLVNLSLSYNYFTQVGPECR 411
                P   ++     +  ++L  N+      +     LP L N+ +SYN F+    +  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 412 KLIKRKVLDVRMNCILDLPNQRSRE 436
              + K   +R     +  N+  R+
Sbjct: 774 NSSQLKAFGIRHQRDAE-GNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (308), Expect = 8e-30
 Identities = 47/286 (16%), Positives = 86/286 (30%), Gaps = 46/286 (16%)

Query: 185 RFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL------- 237
           R         D    L+D  I   N  N    I K   +L  L  +  +N+         
Sbjct: 410 RNPEMKPIKKDSRISLKDTQI--GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467

Query: 238 ------------FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKF 284
                       +    +   N+K+LT ++L        +P  ++ L +L  L +  N+ 
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 285 S---------QNLPENIGSTGAL-YVTFANNEFTG-PIPSSIGRAKYLLEVLFL-NNFFT 332
                       L ++  +   +       N     P  +S+ +    L +L   +N   
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK-LGLLDCVHNKVR 586

Query: 333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHS-FGCLSSMQYLNLAMNQFYG-PVPEIVCQL 390
             L    G     T   +  N++   IP         ++ L  + N+    P       +
Sbjct: 587 H-LE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 391 PKLVNLSLSYNYFTQVGPEC------RKLIKRKVLDVRMNCILDLP 430
             + ++  SYN     G          K I    + +  N I   P
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (308), Expect = 9e-30
 Identities = 35/282 (12%), Positives = 83/282 (29%), Gaps = 31/282 (10%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
                D    +++     ++     S LK L ++++ N       P  + ++  L  L++
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 257 RFNSFSGP---------VPAEIFYL-DLDVLFLNNNKFSQNLPEN--IGSTGAL-YVTFA 303
             N              +  +      + + ++  N      P +  +     L  +   
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581

Query: 304 NNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNS-TVFDVGNNRLTG-PIP 360
           +N+       + G     L  L L  N     +P +    ++        +N+L   P  
Sbjct: 582 HNKVR--HLEAFGTNV-KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNI 637

Query: 361 HSFGCLSSMQYLNLAMNQFYGPVPEI-----VCQLPKLVNLSLSYNYFTQVGPE-CRKLI 414
            +   +  M  ++ + N+       I       +      ++LSYN   +   E      
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 415 KRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTL 456
               + +  N +  +P               K      ++ L
Sbjct: 698 PISTIILSNNLMTSIPE----NSLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (293), Expect = 7e-28
 Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTS--KLKFLYELDVSNNKLFG-----GFPMEVV 246
            DF    + +     + N     IP + +   +  +  +D S NK+          M+  
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 247 NIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-------NLPENIGSTGAL 298
              N + + L +N               +  + L+NN  +            N  +T  L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 299 -YVTFANNEFTGPIPSSIGRAKYL-LEVLFL-NNFFTGCLPYEIGFLSN------STVFD 349
             +    N+ T  +           L  + +  N F+   P +    S           D
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 350 VGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406
              NR+    P       S+  L +  N       ++    P+L  L ++ N    +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (284), Expect = 8e-27
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 38/241 (15%)

Query: 227 LYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGP--------VPAEIFYLDLDVLF 278
           +  L ++     G  P  +  +  L  L    +S +          +  ++       + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 279 LNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYE 338
           ++  K   +  + +  +  L      N    PI      +    ++  L N  T  +   
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443

Query: 339 IGFLSNSTVFDVGNNRLTGP-------------------IPHSFGCLSSMQYLNLAMNQF 379
           I  L+   +    N+  T                        S+  L  +  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 380 YGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR----------KVLDVRMNCILDL 429
              +P+ +  LP+L +L+++ N             +           ++  +  N + + 
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 430 P 430
           P
Sbjct: 564 P 564

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 5e-24
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 36/226 (15%)

Query: 189 PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGF 241
            + S S    K  + +    + N   K   ++ +    +  + +SNN +           
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 242 PMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD---LDVLFLNNNKFSQNLPENIGSTGAL 298
                N   LT +DLRFN  +  +  +        L  + ++ N FS + P    ++  L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL 778

Query: 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357
                             +A  +        N      P  I    +     +G+N +  
Sbjct: 779 ------------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

Query: 358 PIPHSFGCLSSMQYLNLAMNQF-YGPVPEIVCQLPKLVNLSLSYNY 402
            +         +  L++A N      V   VC   +     L Y+ 
Sbjct: 821 -VDEKL--TPQLYILDIADNPNISIDVTS-VCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 8/143 (5%)

Query: 303 ANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH 361
           A     G +P +IG+   L +VL    +  T              + +   +R+      
Sbjct: 331 AGFGAKGRVPDAIGQLTEL-KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 362 SFGC-LSSMQYLNLAMNQF-----YGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIK 415
            F      +   +L  +         P+ +      K   +    N  T +    ++L K
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 416 RKVLDVRMNCILDLPNQRSREEC 438
            +++    +           E+ 
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDA 472

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 30/225 (13%), Positives = 64/225 (28%), Gaps = 15/225 (6%)

Query: 221 TSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLN 280
                 L  + V+  +          +  N  ++D+   +    V        +      
Sbjct: 167 NRVTTELKGMKVTYKEDSKEHQNP--DNANDKYMDIGVATCDSAVWLPAGTYQVVAYTTY 224

Query: 281 NNKFSQNLPENIGSTGALYVTFANNEFTGP--IPSSIGR-AKYLLEVLFLNNFFTG---- 333
           +    +       S      T  +N+ T    +P  +   A+Y+ +   L   +      
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGK 284

Query: 334 -----CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC 388
                         S +  F+   +               +  L+LA     G VP+ + 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 389 QLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLPNQ 432
           QL +L  LS   +  T  G     + +   + + R + I     +
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 3e-30
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 23/261 (8%)

Query: 189 PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248
            D + +     L +L   H  SN+  K       K K L  LD+S+N L        V +
Sbjct: 89  SDKTFAF-CTNLTEL---HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYLD---LDVLFLNNNKFSQNLPENIGSTGAL-YVTFAN 304
           +NL  L L  N        E+       L  L L++N+  +  P    + G L  +   N
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 305 NEFTGPIPSSIGRAKYL--LEVLFL-NNFFTGCLPYEIGFLSNS--TVFDVGNNRLTGPI 359
            +    +   +        +  L L N+  +         L  +  T+ D+  N L    
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR-------- 411
             SF  L  ++Y  L  N         +  L  +  L+L  ++  Q              
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 412 --KLIKRKVLDVRMNCILDLP 430
              L   + L++  N I  + 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIK 345

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  120 bits (303), Expect = 4e-29
 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 18/255 (7%)

Query: 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
           +L           +  +  K        LK L  L++ +N + G        + NL +L 
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 256 LRFNSFS-GPVPAEIFY----LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
           L  +  S   +  E F       L +L L  NK S+   +     G L  +    NE   
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG--PIPHSFGCL 366
            +     R    +  ++L  N +          + +     +    L      P  F  L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC---------RKLIKRK 417
            ++  L+L+ N       +++  L KL  L L +N   ++             + L    
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 418 VLDVRMNCILDLPNQ 432
           +L++  N   ++P +
Sbjct: 540 ILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 3e-28
 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 19/272 (6%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L  L+ L + H   N  ++   K  +    L EL + +N +        V  KNL  LDL
Sbjct: 72  LPMLKVLNLQH---NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 257 RFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGA---LYVTFANNEFTGPIP 312
             N  S         L +L  L L+NNK      E +          +  ++N+     P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 313 SSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSFG--CL 366
                    L  LFL N      L  ++     +T      + N++L+     +F     
Sbjct: 189 GCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNC 425
           +++  L+L+ N       +    LP+L    L YN    +       L   + L+++ + 
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 426 I-LDLPNQRSREECGKFFSESKKCPNERSLTL 456
               +      +     F           L +
Sbjct: 308 TKQSISLASLPKIDDFSFQ---WLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 5e-27
 Identities = 50/253 (19%), Positives = 85/253 (33%), Gaps = 14/253 (5%)

Query: 189 PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248
           P  + +    +L  L +     N  +K  P++  KL  L  L++ +N+L           
Sbjct: 41  PAANFTR-YSQLTSLDV---GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE 306
            NLT L L  NS              L  L L++N  S            L  +  +NN+
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 307 FTGPIPSSIGRAKYL-LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG 364
                   +       L+ L L +N      P     +       + N +L   +     
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 365 ---CLSSMQYLNLAMNQFYGPVPEIV--CQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKV 418
                +S++ L+L+ +Q            +   L  L LSYN    VG +    L + + 
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 419 LDVRMNCILDLPN 431
             +  N I  L +
Sbjct: 277 FFLEYNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (285), Expect = 6e-27
 Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 28/260 (10%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTS--KLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254
           LE L++L + +   N       +         L +L++S+N++    P     I  L  L
Sbjct: 144 LENLQELLLSN---NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 255 DLRFNSFSGPVPAEIFYLD----LDVLFLNNNKFSQNLPENIGSTGAL---YVTFANNEF 307
            L        +  ++        +  L L+N++ S                 +  + N  
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLS---------NSTVFDVGNNRLTG 357
                 S      L E  FL  N       + +  L          + T   +    L  
Sbjct: 261 NVVGNDSFAWLPQL-EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE---CRKLI 414
               SF  L  +++LN+  N   G    +   L  L  LSLS ++ +           L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 415 KR--KVLDVRMNCILDLPNQ 432
                +L++  N I  + + 
Sbjct: 380 HSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (281), Expect = 2e-26
 Identities = 47/262 (17%), Positives = 86/262 (32%), Gaps = 18/262 (6%)

Query: 180 DFNGYRFNGPDFSLSDFLE-KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF 238
             +    +    +   F+      L I +   N  +K      S L  L  LD+  N++ 
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

Query: 239 GGFPMEV-VNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS--QNLPENIGS 294
                +    ++N+  + L +N +          +  L  L L         + P     
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 295 TGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFL--NNF-------FTGCLPYEIGFLSN 344
              L  +  +NN         +   + L E+L L  NN          G   Y +  LS+
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 345 STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
             + ++ +N         F  L  ++ ++L +N        +      L +L+L  N  T
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 405 QVGPECRKLIKR--KVLDVRMN 424
            V  +      R    LD+R N
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (270), Expect = 5e-25
 Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 12/231 (5%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
           S+     +P        +  L++++N+L             LT LD+ FN+ S   P   
Sbjct: 12  SHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69

Query: 270 FYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFL 327
             L  L VL L +N+ SQ   +       L  +   +N       +   + K  L  L L
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN-LITLDL 128

Query: 328 -NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG--CLSSMQYLNLAMNQFYGPVP 384
            +N  +         L N     + NN++             SS++ L L+ NQ     P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 385 EIVCQLPKLVNLSLSYNYFTQVGPE----CRKLIKRKVLDVRMNCILDLPN 431
                + +L  L L+         E           + L +  + +    N
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 1e-24
 Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 185 RFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPM 243
             N      SD    L  L +     N   + +       L+ ++E+ +S NK       
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 244 EVVNIKNLTFLDLRFNSFSG--PVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYV 300
               + +L  L LR  +       P+    L +L +L L+NN  +    + +     L +
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 301 ---------TFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDV 350
                        +   G     +    +L  +L L +N F          L    + D+
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 351 GNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC-QLPKLVNLSLSYNYFT 404
           G N L       F    S++ LNL  N       ++       L  L + +N F 
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 8/186 (4%)

Query: 250 NLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308
           +    D      +  VP ++   ++ VL L +N+  +    N      L  +    N  +
Sbjct: 5   SHEVADCSHLKLTQ-VPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 309 GPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLS 367
              P    +   L +VL L +N  +        F +N T   + +N +     + F    
Sbjct: 63  KLEPELCQKLPML-KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE---CRKLIKRKVLDVRMN 424
           ++  L+L+ N           QL  L  L LS N    +  E          K L++  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 425 CILDLP 430
            I +  
Sbjct: 182 QIKEFS 187

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 304 NNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHS 362
           + + T  +P  +      + VL L +N             S  T  DVG N ++   P  
Sbjct: 13  HLKLTQ-VPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDV 421
              L  ++ LNL  N+      +       L  L L  N   ++      K      LD+
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 422 RMNCILDLPNQ 432
             N +      
Sbjct: 129 SHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 40/226 (17%), Positives = 63/226 (27%), Gaps = 24/226 (10%)

Query: 194 SDFLEKLEDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
            +    +  L              S P     L+ L  LD+SNN +       +  ++ L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 252 TFLDLRFNSFS--------GPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGAL-YVT 301
             LDL+ N+ +        G     +  L  L +L L +N F +   E       L  + 
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 302 FANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIG-FLSNSTVFDVGNNRLTGPI 359
              N       S       L + L L  N  T       G    N T  D+  N      
Sbjct: 567 LGLNNLNTLPASVFNNQVSL-KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP------KLVNLSLS 399
                    + ++N             +C  P       +     S
Sbjct: 626 ESI---AWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 1e-29
 Identities = 49/225 (21%), Positives = 79/225 (35%), Gaps = 11/225 (4%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFLDLRFNSFSGPVP 266
              +           L  L  LD+S N L   G          +L +LDL FN     + 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 267 AEIFYLD-LDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYLLE 323
           +    L+ L+ L   ++   Q    ++       +Y+  ++                L E
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-E 448

Query: 324 VLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381
           VL +  N+F    LP     L N T  D+   +L    P +F  LSS+Q LN++ N F+ 
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 382 PVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR--KVLDVRMN 424
                   L  L  L  S N+      +  +        L++  N
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 3e-24
 Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 11/204 (5%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
            N               L  LD+S  ++         ++ +L+ L L  N          
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96

Query: 270 FYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG-PIPSSIGRAKYLLEVLF 326
             L  L  L       +      IG    L  +  A+N      +P         LE L 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLD 155

Query: 327 L-NNFFTGCLPYEIGFLSNSTVF----DVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381
           L +N        ++  L    +     D+  N +    P +F  +  +  L L  N    
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 382 PVPEIVCQ-LPKLVNLSLSYNYFT 404
            V +   Q L  L    L    F 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 4e-23
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 12/221 (5%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
                +L +   +              L  L  L ++ N +          + +L  L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 257 RFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPS 313
              + +      I +L  L  L + +N      LPE   +   L ++  ++N+      +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 314 SIGRAKYL-LEVLFLN---NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIP-HSFGCLSS 368
            +     + L  L L+   N     +              + NN  +  +       L+ 
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 369 MQYLNLAMNQFYG---PVPEIVCQLPKLVNLSLSYNYFTQV 406
           ++   L + +F             L  L NL++       +
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 8e-22
 Identities = 41/279 (14%), Positives = 74/279 (26%), Gaps = 40/279 (14%)

Query: 191 FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK----FLYELDVSNNKLFGGFPMEVV 246
           F L ++   L +L     +SN            L         LD+S N +         
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF 197

Query: 247 NIKNLTFLDLRFNSFSGPVPAEIF-------YLDLDVL-FLNNNKFSQNLPENIGSTGAL 298
               L  L LR N  S  V               L +  F N     +     +     L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 299 YVTF----ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR 354
            +        + +   I         +     ++            +       ++ N +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 355 LT-------------------GPIPHSFGCLSSMQYLNLAMNQ--FYGPVPEIVCQLPKL 393
                                G    S   L S+++L+L+ N   F G   +       L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ 432
             L LS+N    +      L + + LD + + +  +   
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 9e-22
 Identities = 40/256 (15%), Positives = 76/256 (29%), Gaps = 28/256 (10%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L  L  L +     N          S L  L +L      L       + ++K L  L++
Sbjct: 75  LSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 257 RFNSF-SGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTF-----ANNEFTG 309
             N   S  +P     L +L+ L L++NK       ++     + +       + N    
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYE-IGFLSNSTVFD------VGNNRLTGPIPH 361
             P +    +  L  L L NNF +  +    I  L+   V             L      
Sbjct: 192 IQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 362 SFGCLSSMQYLNLAMNQ---FYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKR 416
           +   L ++      +     +   + ++   L  + + SL      +V            
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW--- 306

Query: 417 KVLDVRMNCILDLPNQ 432
           + L++        P  
Sbjct: 307 QHLELVNCKFGQFPTL 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 10/216 (4%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPK-MTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250
           ++S     LE L       +N  +     +   L+ L  LD+S+      F      + +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 251 LTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEF 307
           L  L +  NSF      +IF    +L  L L+  +  Q  P    S  +L  +  ++N F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIG-FLSNSTVFDVGNNRLTGPIPHS--F 363
                        L +VL    N        E+  F S+    ++  N       H    
Sbjct: 507 FSLDTFPYKCLNSL-QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565

Query: 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
             +   + L + + +     P     +P +++L+++
Sbjct: 566 QWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 6e-17
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 8/161 (4%)

Query: 276 VLFLNNNKFSQNLPENIG-STGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTG 333
                   F + +P+N+  ST  L    + N        S      L +VL L       
Sbjct: 11  TYQCMELNFYK-IPDNLPFSTKNLD--LSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQT 66

Query: 334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL 393
                   LS+ +   +  N +      +F  LSS+Q L              +  L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 394 VNLSLSYNYFT--QVGPECRKLIKRKVLDVRMNCILDLPNQ 432
             L++++N     ++      L   + LD+  N I  +   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 190 DFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIK 249
           +  L D   +L +L     +     +  P   + L  L  L++S+N  F         + 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 250 NLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFS 285
           +L  LD   N        E+ +    L  L L  N F+
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 6e-27
 Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 17/244 (6%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           ++ +  +      I     ++  +++  +      + ELD+S N L      ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 252 TFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
             L+L  N        ++  L  L  L LNNN   +     +    ++  +  ANN  + 
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR 113

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCLS 367
            +  S G+     + ++L NN  T     + G  S     D+  N +             
Sbjct: 114 -VSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427
           ++++LNL  N  Y  V   V    KL  L LS N    +GPE +       + +R N ++
Sbjct: 170 TLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 428 DLPN 431
            +  
Sbjct: 228 LIEK 231

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 4e-22
 Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 20/241 (8%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
             KLE L +    S+N       +   L  L  LD++NN +      E++   ++  L  
Sbjct: 57  FTKLELLNL----SSNVLYETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG-PIPSS 314
             N+ S  V           ++L NNK +     + G    + Y+    NE         
Sbjct: 107 ANNNISR-VSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 315 IGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373
              +   LE L L  NF    +  ++   +     D+ +N+L   +   F   + + +++
Sbjct: 165 AASSD-TLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR 433
           L  N+    + + +     L +  L  N F            ++V  V    +  L  Q 
Sbjct: 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 434 S 434
            
Sbjct: 280 E 280

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 11/205 (5%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L     +   HA +NN +  +    S+ +    + ++NNK+     ++      + +LDL
Sbjct: 95  LLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 257 RFNSFSG-PVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS 314
           + N              D L+ L L  N    ++   +       +  ++N+    +   
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAF-MGPE 209

Query: 315 IGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLT-GPIPHSFGCLSSMQYL 372
              A  +   + L NN     +   + F  N   FD+  N    G +   F     +Q +
Sbjct: 210 FQSAAGV-TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 373 NLAMNQFYGPVPEIVCQLPKLVNLS 397
                +      E  C +P L +  
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
              KL+ L     +SN     +         +  + + NNKL       +   +NL   D
Sbjct: 189 VFAKLKTL---DLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFD 243

Query: 256 LRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFT 308
           LR N F      + F  +  V  +      + L         +        + 
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTV-KKLTGQNEEECTVPTLGHYGAYC 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 1e-26
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 21/228 (9%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
              D   +L  L     ++      +P    +   L  L ++ N L    P  + ++  L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRL 152

Query: 252 TFLDLRFNSFSGPVPAEIFYLD----------LDVLFLNNNKFSQNLPENIGSTGALYV- 300
             L +R       +P  +   D          L  L L        LP +I +   L   
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSL 211

Query: 301 TFANNEFTGPIPSSIGRAKYLLEVLFL--NNFFTGCLPYEIGFLSNSTVFDV-GNNRLTG 357
              N+  +  +  +I     L E L L          P   G  +      +   + L  
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKL-EELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLT 268

Query: 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
            +P     L+ ++ L+L        +P ++ QLP    + +  +   Q
Sbjct: 269 -LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 40/255 (15%), Positives = 72/255 (28%), Gaps = 25/255 (9%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           S              +   +   +    + S+ +  Y  D +             N  N 
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58

Query: 252 TFLDLRFNSFSGPVPAEIFYL---DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEF 307
                   +        +          L L +    Q  P+       L ++T      
Sbjct: 59  QIETRTGRALKA-TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGL 116

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDV-GNNRLT--------G 357
              +P ++ +   L E L L  N     LP  I  L+      +     LT         
Sbjct: 117 ME-LPDTMQQFAGL-ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRK 417
                   L ++Q L L        +P  +  L  L +L +  +  + +GP    L K +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 418 VLDVR-MNCILDLPN 431
            LD+R    + + P 
Sbjct: 233 ELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPK---------MTSKLKFLYELDVSNNKLFGGFP 242
           +L   +  L  L      +      +P+             L  L  L +    +    P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLP 199

Query: 243 MEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIG---STGAL 298
             + N++NL  L +R +  S  +   I +L  L+ L L      +N P   G       L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG 357
            +    +     +P  I R   L E L L        LP  I  L  + +  V  +    
Sbjct: 259 ILKD-CSNLLT-LPLDIHRLTQL-EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 358 PIPH 361
              H
Sbjct: 316 LDQH 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 2e-26
 Identities = 40/249 (16%), Positives = 75/249 (30%), Gaps = 17/249 (6%)

Query: 189 PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248
            + +LS   + L+ L          +          K L  L + +N +      +    
Sbjct: 97  AETALSG-PKALKHL---FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 249 KNLTFLDLRFNSFSGPVPAEIFY----LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFA 303
           + L  LD + N+    +  E            L LN N  +  +      +     + F 
Sbjct: 153 EKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFG 210

Query: 304 NNEFTGPIPSSIGRAKYL-LEVL-FLNNFFTGCLPYEIGFLSNSTV--FDVGNNRLTGPI 359
             +    I   +  +    L +  F +       P     L   +V   ++  +      
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKV 418
            ++F C S +Q L+L        +P  +  L  L  L LS N F  +             
Sbjct: 271 SNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 419 LDVRMNCIL 427
           L ++ N   
Sbjct: 330 LSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (267), Expect = 1e-24
 Identities = 47/248 (18%), Positives = 78/248 (31%), Gaps = 9/248 (3%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVV-NIKN 250
            L   L  L  L     ++N F        S    L  L +  N          + N++N
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 251 LTFLDLRFN--SFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE 306
           L  LDL  +    S     ++  L  L  L L+ N+      E       L  +  A   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI---PHS 362
                  S  +  +LL+VL L ++            L      ++  N          +S
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVR 422
              L  ++ L L+              L  + ++ LS+N  T    E    +K   L++ 
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 423 MNCILDLP 430
            N I  + 
Sbjct: 532 SNHISIIL 539

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 8e-24
 Identities = 41/243 (16%), Positives = 72/243 (29%), Gaps = 12/243 (4%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
             +L+ L +     N          S  K L  L      +     + + N K L  L L
Sbjct: 80  QHRLDTLVLTA---NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 257 RFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL---YVTFANNEFTGPIP 312
             N  S     + F    L VL   NN       E++ S        +    N+  G I 
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IE 195

Query: 313 SSIGRAKYLLEVLFLNNFFTGCLPYEIGF--LSNSTVFDVGNNRLTGPIPHSFG--CLSS 368
                +     + F        +   +    + +  +    +       P  F   C  S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 369 MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428
           ++ +NL  + F+            L  L L+  + +++      L   K L +  N   +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 429 LPN 431
           L  
Sbjct: 316 LCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.3 bits (248), Expect = 2e-22
 Identities = 40/243 (16%), Positives = 89/243 (36%), Gaps = 15/243 (6%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL--FGGFPMEVVNIKN 250
                    L       N     +       L+ L ELD+S++ +       +++ N+ +
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 251 LTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNE 306
           L  L+L +N     +  E F     L++L L   +      ++   +   L  +  +++ 
Sbjct: 378 LQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHS 362
                          L+ L L  N F      +   L       +  +    L+    H+
Sbjct: 437 LDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR-KVLDV 421
           F  L  M +++L+ N+      E +  L  +  L+L+ N+ + + P    ++ + + +++
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINL 554

Query: 422 RMN 424
           R N
Sbjct: 555 RQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 38/273 (13%), Positives = 75/273 (27%), Gaps = 40/273 (14%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           +L +  E L +      + N          S+L  L  LD++  +++        +   L
Sbjct: 30  TLPNSTECL-EF-----SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 252 TFLDLRFNSFSGPVPAEIF-------YLDLD-------------------VLFLNNNKFS 285
             L L  N     +            +L                       L+L +N  S
Sbjct: 84  DTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 286 QNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYL-LEVLFLNNFFTGCLPYEIGFLS 343
                    T  L  + F NN         +   +      L LN      +       +
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 344 NSTVFDVGNNRLTGPIPH--SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK--LVNLSLS 399
                + G  +    I        + S+              P +   L +  + +++L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 400 YNYFTQVGPEC-RKLIKRKVLDVRMNCILDLPN 431
            +YF  +           + LD+    + +LP+
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPS 295

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 3e-16
 Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEV-VNIKNLT 252
           +  L  L  L   + + N       +   +   L  LD++  +L          N+  L 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 253 FLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGAL----YVTFANNE 306
            L+L  +        ++F     L  L L  N F +   +   S   L     +  +  +
Sbjct: 429 VLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC 365
            +     +    K +   + L +N  T     E          ++ +N ++  +P     
Sbjct: 488 LSSIDQHAFTSLKMM-NHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPI 545

Query: 366 LSSMQYLNLAMNQF-------------------YGPVPEIVCQ-LPKLVNLSLSYNYFT 404
           LS  + +NL  N                          + +C+  P L  + LS    +
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 29/212 (13%), Positives = 52/212 (24%), Gaps = 42/212 (19%)

Query: 229 ELDVSNNKLF---GGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNK 283
             +  N  L    G  P       +   L+  FN     +    F   ++L  L L   +
Sbjct: 16  TYNCENLGLNEIPGTLP------NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQ 68

Query: 284 FSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFL 342
               + E+         TF +                 L+ L L  N         +   
Sbjct: 69  IYW-IHED---------TFQSQH--------------RLDTLVLTANPLIFMAETALSGP 104

Query: 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
                       ++           +++ L L  N              KL  L    N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 403 FTQVGPE----CRKLIKRKVLDVRMNCILDLP 430
              +  E     ++      L++  N I  + 
Sbjct: 165 IHYLSKEDMSSLQQA-TNLSLNLNGNDIAGIE 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 185 RFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPME 244
            F   +   ++ L+ L  L I   +  + +       + LK +  +D+S+N+L       
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 245 VVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS 285
           + ++K +  L+L  N  S  +P+ +  L     + L  N   
Sbjct: 520 LSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 5e-26
 Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 17/244 (6%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           ++ +  +      I     ++  +++  +      + ELD+S N L      ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 252 TFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
             L+L  N        ++  L  L  L LNNN         +    ++  +  ANN  + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCLS 367
            +  S G+     + ++L NN  T     + G  S     D+  N +             
Sbjct: 114 -VSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427
           ++++LNL  N  Y  V   V    KL  L LS N    +GPE +       + +R N ++
Sbjct: 170 TLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 428 DLPN 431
            +  
Sbjct: 228 LIEK 231

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 10/264 (3%)

Query: 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
              KL+ L +    S+N    +         +  + + NNKL       +   +NL   D
Sbjct: 189 VFAKLKTLDL----SSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFD 243

Query: 256 LRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS- 314
           LR N F      + F  +  V  +      +   +N        +          +P+  
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 315 IGRAKYL----LEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
             R   L      +L      T  L  E    +     D    +    I        +  
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
            L          V        +L           ++     +    ++L   +    ++ 
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

Query: 431 NQRSREECGKFFSESKKCPNERSL 454
            ++   +             E  L
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQL 447

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (267), Expect = 7e-25
 Identities = 51/246 (20%), Positives = 86/246 (34%), Gaps = 30/246 (12%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
                 +K E  A+   N N     + +    +    EL ++   L    P  +     +
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNL-SSLPDNL--PPQI 82

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
           T L++  N+    +P       L+ L   +N+ S  LPE   S   L V   NN+ T  +
Sbjct: 83  TVLEITQNALI-SLPELPA--SLEYLDACDNRLST-LPELPASLKHLDVD--NNQLTM-L 135

Query: 312 PSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
           P        LLE +   NN  T  LP     L    V  V NN+LT  +P       S++
Sbjct: 136 PELPA----LLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLTF-LPEL---PESLE 183

Query: 371 YLNLAMNQFYGPVPEIVCQLPKL----VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426
            L+++ N     +P +  +        +      N  T +      L     + +  N +
Sbjct: 184 ALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 427 LDLPNQ 432
                +
Sbjct: 243 SSRIRE 248

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 7e-18
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 23/192 (11%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           SL +    LE L       +N   ++P++ + LK    LDV NN+L    P        L
Sbjct: 94  SLPELPASLEYLDA----CDNRLSTLPELPASLK---HLDVDNNQL-TMLPEL---PALL 142

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
            +++   N  +  +P     L+  VL + NN+ +  LPE   S  AL V  + N     +
Sbjct: 143 EYINADNNQLTM-LPELPTSLE--VLSVRNNQLTF-LPELPESLEALDV--STNLLES-L 195

Query: 312 PSSIGRAKYLLEVLFL----NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLS 367
           P+   R  +  E         N  T  +P  I  L  +    + +N L+  I  S    +
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 368 SMQYLNLAMNQF 379
           +    +     F
Sbjct: 255 AQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 17/147 (11%), Positives = 38/147 (25%), Gaps = 7/147 (4%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFT---KSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248
            L +  E LE L     ++N          +     +         N++    P  ++++
Sbjct: 174 FLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSL 229

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFT 308
                + L  N  S  +   +        +     +         +            F 
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289

Query: 309 GPIPSSIGRAKYLLEVLFLNNFFTGCL 335
               S + +  +  E     N F+  L
Sbjct: 290 ENKQSDVSQIWHAFEHEEHANTFSAFL 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 3e-23
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 28/247 (11%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           SL      L++L++    S+N   S+P + S+L    +L   NN+L    PM       L
Sbjct: 135 SLPVLPPGLQELSV----SDNQLASLPALPSELC---KLWAYNNQL-TSLPML---PSGL 183

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
             L +  N  +  +P      +L  L+  NN+ +  LP        L V+   N  T  +
Sbjct: 184 QELSVSDNQLAS-LPTLPS--ELYKLWAYNNRLTS-LPALPSGLKELIVS--GNRLTS-L 236

Query: 312 PSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
           P         L+ L +  N  T  LP     L       V  N+LT  +P S   LSS  
Sbjct: 237 PVLPSE----LKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLTR-LPESLIHLSSET 287

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
            +NL  N       + + ++      S     F   G    +  +   L      +    
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

Query: 431 NQRSREE 437
            + +  +
Sbjct: 348 GEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 5e-22
 Identities = 55/262 (20%), Positives = 90/262 (34%), Gaps = 47/262 (17%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-------------- 237
           SL     +L  L +    S N   S+P +   L  L         L              
Sbjct: 75  SLPALPPELRTLEV----SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130

Query: 238 --FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGST 295
                 P+       L  L +  N  +  +PA     +L  L+  NN+ +  LP      
Sbjct: 131 NQLTSLPVL---PPGLQELSVSDNQLAS-LPALPS--ELCKLWAYNNQLTS-LPMLPSGL 183

Query: 296 GALYVTFANNEFTGPIPSSIGRAKYLLEVLF-LNNFFTGCLPYEIGFLSNSTVFDVGNNR 354
             L V+  +N+    +P+        L  L+  NN  T  LP     L       V  NR
Sbjct: 184 QELSVS--DNQLAS-LPTLPSE----LYKLWAYNNRLT-SLPALPSGL---KELIVSGNR 232

Query: 355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLI 414
           LT  +P      S ++ L ++ N+    +P        L++LS+  N  T++      L 
Sbjct: 233 LTS-LPVL---PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIHLS 284

Query: 415 KRKVLDVRMNCILDLPNQRSRE 436
               +++  N + +   Q  RE
Sbjct: 285 SETTVNLEGNPLSERTLQALRE 306

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 7e-18
 Identities = 46/241 (19%), Positives = 76/241 (31%), Gaps = 60/241 (24%)

Query: 227 LYELDVSNNKLFGGFPMEV------------------VNIKNLTFLDLRFNSFSGPVPAE 268
              L+V  + L    P  +                       L  L++  N  +  +P  
Sbjct: 42  NAVLNVGESGL-TTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPVL 99

Query: 269 IFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL 327
              L +L +           LP  +     L++    N+ T  +P         L+ L +
Sbjct: 100 PPGLLELSIFSNPLTHLP-ALPSGLCK---LWI--FGNQLTS-LPVLPPG----LQELSV 148

Query: 328 NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV 387
           ++     LP     L         NN+LT  +P     L   Q L+++ NQ    +P + 
Sbjct: 149 SDNQLASLPALPSELCK---LWAYNNQLTS-LPMLPSGL---QELSVSDNQLAS-LPTLP 200

Query: 388 CQLPKLV-----------------NLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
            +L KL                   L +S N  T +     +L   K L V  N +  LP
Sbjct: 201 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLP 257

Query: 431 N 431
            
Sbjct: 258 M 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 18/129 (13%)

Query: 304 NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF 363
            +  T  +P  +      +  L + +     LP     L      +V  N+LT  +P   
Sbjct: 49  ESGLTT-LPDCLPAH---ITTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTS-LPVLP 100

Query: 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRM 423
             L  +   +  +         +      L  L +  N  T +      L   + L V  
Sbjct: 101 PGLLELSIFSNPLTH-------LPALPSGLCKLWIFGNQLTSLPVLPPGL---QELSVSD 150

Query: 424 NCILDLPNQ 432
           N +  LP  
Sbjct: 151 NQLASLPAL 159

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400
             + + V +VG + LT  +P      + +  L +  N        +    P+L  L +S 
Sbjct: 38  LNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNL----TSLPALPPELRTLEVSG 90

Query: 401 NYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ 432
           N  T +      L++  +    +  +  LP+ 
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPSG 122

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 8/132 (6%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           SL     +L++L +    S N   S+P + S L     L V  N+L    P  ++++ + 
Sbjct: 235 SLPVLPSELKELMV----SGNRLTSLPMLPSGLL---SLSVYRNQL-TRLPESLIHLSSE 286

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
           T ++L  N  S      +  +     +            +           A +      
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 312 PSSIGRAKYLLE 323
                 A     
Sbjct: 347 EGEPAPADRWHM 358

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.5 bits (249), Expect = 3e-23
 Identities = 47/235 (20%), Positives = 85/235 (36%), Gaps = 18/235 (7%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254
             L  L  +   +  +N+    +  + S +  L  L V+ +K+       + N+ +L  L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKV-KDVT-PIANLTDLYSL 182

Query: 255 DLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP 312
            L +N      P  +  L  L       N+ +      + +   L  +   NN+ T   P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP 238

Query: 313 SSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
             +     L   L +  N  +  +   +  L+   + +VG+N+++         LS +  
Sbjct: 239 --LANLSQL-TWLEIGTNQISD-IN-AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNS 291

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426
           L L  NQ      E++  L  L  L LS N+ T +      L K    D     I
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI-RPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 54/245 (22%), Positives = 90/245 (36%), Gaps = 25/245 (10%)

Query: 192 SLSDF--LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIK 249
           S+     L  LE L +     N  T   P   S L  L  L +  NK+       + N+ 
Sbjct: 58  SIQGIEYLTNLEYLNLNG---NQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLT 110

Query: 250 NLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEF 307
           NL  L L  ++ S   P  +  L  +  L L  N    +    + +   L Y+T   ++ 
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKV 167

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL 366
               P  I      L  L L  N     +   +  L++   F    N++T   P     +
Sbjct: 168 KDVTP--IANLTD-LYSLSLNYNQIED-IS-PLASLTSLHYFTAYVNQITDITP--VANM 220

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426
           + +  L +  N+     P  +  L +L  L +  N  + +    + L K K+L+V  N I
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQI 277

Query: 427 LDLPN 431
            D+  
Sbjct: 278 SDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 43/246 (17%), Positives = 87/246 (35%), Gaps = 28/246 (11%)

Query: 191 FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250
           F  +D L +     +      + T  + +   +L+ + +L V+  K+     +E   + N
Sbjct: 16  FPDAD-LAEGIRAVL---QKASVTDVVTQ--EELESITKLVVAGEKVASIQGIE--YLTN 67

Query: 251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308
           L +L+L  N  +   P  +  L  L  L++  NK +      + +   L  +    +  +
Sbjct: 68  LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNIS 123

Query: 309 GPIPSSIGRAKYL--LEVLFLN-NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC 365
              P +      L  +  L L  N         +  ++      V  +++    P     
Sbjct: 124 DISPLA-----NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IAN 175

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC 425
           L+ +  L+L  NQ    +  +   L  L   +   N  T + P    + +   L +  N 
Sbjct: 176 LTDLYSLSLNYNQIED-ISPL-ASLTSLHYFTAYVNQITDITPVA-NMTRLNSLKIGNNK 232

Query: 426 ILDLPN 431
           I DL  
Sbjct: 233 ITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 20/209 (9%)

Query: 227 LYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ 286
              L      +   FP    ++       L+  S +  V  E     +  L +   K + 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQEEL-ESITKLVVAGEKVAS 58

Query: 287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSN 344
              + I     L Y+    N+ T   P  +      L  L++  N  T  +   +  L+N
Sbjct: 59  --IQGIEYLTNLEYLNLNGNQITDISP--LSNLVK-LTNLYIGTNKITD-IS-ALQNLTN 111

Query: 345 STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
                +  + ++   P     L+ M  LNL  N         +  +  L  L+++ +   
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 405 QVGP--ECRKLIKRKVLDVRMNCILDLPN 431
            V P      L     L +  N I D+  
Sbjct: 169 DVTPIANLTDL---YSLSLNYNQIEDISP 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (253), Expect = 6e-23
 Identities = 46/231 (19%), Positives = 71/231 (30%), Gaps = 14/231 (6%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFLDLRFNSFSGPVPA 267
           + N      K  + L  L  LD+S N L   G      +   +L  LDL FN       A
Sbjct: 336 TMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SA 393

Query: 268 EIFYL-DLDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYLLEV 324
               L +L  L   ++   +    +        LY+  +                  L  
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNT 452

Query: 325 LFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP 382
           L +  N F       +    +N T  D+   +L       F  L  +Q LN++ N     
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 383 VPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR-KVLDVRMN---CILDL 429
                 QL  L  L  S+N         +   K     ++  N   CI + 
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.6 bits (228), Expect = 8e-20
 Identities = 36/242 (14%), Positives = 71/242 (29%), Gaps = 14/242 (5%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLY--ELDVSNNKLFGGFPMEVVNIKNLTFL 254
           L     +     +  N     P +   L  +   E  ++    F    ++   + N++ +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS 314
            L   S    +     +     L +   +  Q    ++    +L      N+ +      
Sbjct: 291 SLAGVSIKY-LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT--LTMNKGSISFKKV 347

Query: 315 IGRAKYLLEVLFL-NNFFT--GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
              +   L  L L  N  +  GC  Y     ++    D+  N     +  +F  L  +Q+
Sbjct: 348 ALPS---LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403

Query: 372 LNLAMNQFYG-PVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDL 429
           L+   +             L KL+ L +SY             L     L +  N   D 
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 430 PN 431
             
Sbjct: 464 TL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 9e-20
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 11/187 (5%)

Query: 250 NLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE 306
           +   +DL FN     + +  F  + +L  L L+  +      +       L  +    N 
Sbjct: 33  STKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFG 364
                P S      L E L            + IG L      +V +N +    +P  F 
Sbjct: 92  IQSFSPGSFSGLTSL-ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 365 CLSSMQYLNLAMNQFYGPVPEIVCQLPKL----VNLSLSYNYFTQVGPECRKLIKRKVLD 420
            L+++ +++L+ N         +  L +     ++L +S N    +  +  + IK   L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 421 VRMNCIL 427
           +R N   
Sbjct: 211 LRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 39/252 (15%), Positives = 67/252 (26%), Gaps = 21/252 (8%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L  L +L +     N      P   S L  L  L     KL       +  +  L  L++
Sbjct: 79  LHHLSNLILTG---NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 257 RFNSFSG-PVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTF-----ANNEFTG 309
             N      +PA    L +L  + L+ N        ++               + N    
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 310 PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGF-LSNSTVFD------VGNNRLTGPIPHS 362
            I     +   L E+    NF +  +       L+   V             L    P  
Sbjct: 196 -IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 363 FGCLSSMQY--LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLD 420
              L  +      L     +         L  +  +SL+      +  +  K  K + L 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLS 313

Query: 421 VRMNCILDLPNQ 432
           +    +   P  
Sbjct: 314 IIRCQLKQFPTL 325

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 45/253 (17%), Positives = 77/253 (30%), Gaps = 28/253 (11%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG-GFPMEVVNIKNLTFLD 255
           L  LE+L    A              +L  L +L+V++N +     P    N+ NL  +D
Sbjct: 103 LTSLENL---VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 256 LRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308
           L +N     +                 L ++ N     + +       L  +T   N  +
Sbjct: 160 LSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNS 217

Query: 309 GPIPSSIGRAKYLLEVLFL-------NNFFTGCLPYEIGFLSNSTV--FDVGNNRLTGPI 359
             I  +  +    L V  L               P  +  L + T+  F +         
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKV 418
              F CL+++  ++LA           V +  K  +LS+      Q        L   K 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFPTLDLPFL---KS 332

Query: 419 LDVRMNCILDLPN 431
           L + MN       
Sbjct: 333 LTLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 9e-16
 Identities = 39/269 (14%), Positives = 75/269 (27%), Gaps = 24/269 (8%)

Query: 179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF 238
           VD +         +   FL +   + +    S N    I     +   L+EL +  N   
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217

Query: 239 GG-FPMEVVNIKNLTFLDLRFNSFSGPVPAEIF---------YLDLDVLFLNNNKFSQNL 288
                  + N+  L    L    F      EIF          + +D   L       + 
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 289 PENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNST 346
                    +  ++ A       +        +  + L +          +    L    
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKY-LEDVPK--HFKWQSLSIIRCQLKQ---FPTLDLPFLK 331

Query: 347 VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ---LPKLVNLSLSYNYF 403
              +  N+ +  I      L S+ YL+L+ N                  L +L LS+N  
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 404 TQVGPECRKLIKRKVLDVRMNCILDLPNQ 432
             +      L + + LD + + +  +   
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEF 417

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 6/171 (3%)

Query: 263 GPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
           G +   I  +        + K S+ +P++I S+    +  + N        S      L 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSK-VPDDIPSS-TKNIDLSFNPLKILKSYSFSNFSEL- 58

Query: 323 EVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381
           + L L               L + +   +  N +    P SF  L+S++ L     +   
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 382 PVPEIVCQLPKLVNLSLSYNYFT--QVGPECRKLIKRKVLDVRMNCILDLP 430
                + QL  L  L++++N+    ++      L     +D+  N I  + 
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLT 252
             L KL +L    A +N  +   P     L  L EL ++ N+L   G       ++ NLT
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTL----ASLTNLT 246

Query: 253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGP 310
            LDL  N  S   P  +  L  L  L L  N+ S      +    AL  +    N+    
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 302

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
            P  I   K L  +    N  +   P  +  L+        NN+++         L+++ 
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNIN 356

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
           +L+   NQ     P  +  L ++  L L+   +T      +  +        +   L  P
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

Query: 431 NQ 432
             
Sbjct: 415 AT 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 30/246 (12%)

Query: 191 FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250
           F+ +  L +     +      N T ++ +  + L  +  L      +       V  + N
Sbjct: 18  FTDTA-LAEKMKTVL---GKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNN 69

Query: 251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308
           LT ++   N  +   P  +  L  L  + +NNN+ +      + +   L  +T  NN+ T
Sbjct: 70  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 125

Query: 309 GPIPSSIGRAKYL--LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC 365
              P        L  L  L L +N  +      +  L++      GN  +T   P     
Sbjct: 126 DIDPLK-----NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LAN 175

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC 425
           L++++ L+++ N+       ++ +L  L +L  + N  + +      L     L +  N 
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQ 232

Query: 426 ILDLPN 431
           + D+  
Sbjct: 233 LKDIGT 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 50/238 (21%), Positives = 82/238 (34%), Gaps = 39/238 (16%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVN-------------IKNLTFLD 255
           +S+N T  +P     +K   E   + ++     P                   +    L+
Sbjct: 19  HSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 256 LRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFAN-NEFTGPIPSS 314
           L     S  +P       L+ L  + N  +  LPE   S  +L V   N    +   P  
Sbjct: 78  LNNLGLS-SLPELPP--HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL- 132

Query: 315 IGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373
                  LE L + NN     LP E+   S   + DV NN L   +P       S++++ 
Sbjct: 133 -------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIA 179

Query: 374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
              NQ    +PE+   LP L  +    N   ++      L   + +    N + +LP 
Sbjct: 180 AGNNQLEE-LPEL-QNLPFLTAIYADNNSLKKLPDLPLSL---ESIVAGNNILEELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 53/271 (19%), Positives = 86/271 (31%), Gaps = 52/271 (19%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKL-------------KFLYELDVSNNKLF 238
            +    E ++    ++   + + ++ P    +              +  +EL+++N  L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL- 83

Query: 239 GGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ----------- 286
              P       +L  L    NS +  +P     L  L V   N    S            
Sbjct: 84  SSLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139

Query: 287 -----NLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIG 340
                 LPE   S+    +   NN     +P         LE +   NN     LP E+ 
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPS----LEFIAAGNNQLE-ELP-ELQ 192

Query: 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400
            L   T     NN L   +P       S++ +    N      PE+   LP L  +    
Sbjct: 193 NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEEL-PEL-QNLPFLTTIYADN 246

Query: 401 NYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
           N    +      L   + L+VR N + DLP 
Sbjct: 247 NLLKTLPDLPPSL---EALNVRDNYLTDLPE 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 9e-20
 Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 46/259 (17%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           +LSD    LE L +    SNN  + +P++     FL  +DV NN L    P       +L
Sbjct: 125 ALSDLPPLLEYLGV----SNNQLEKLPEL-QNSSFLKIIDVDNNSL-KKLP---DLPPSL 175

Query: 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGP 310
            F+    N        E+  L  L  ++ +NN   + LP+   S  ++     NN     
Sbjct: 176 EFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVA--GNNILE-- 228

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL---- 366
               +    +L  +   NN     LP     L      +V +N LT  +P     L    
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLTD-LPELPQSLTFLD 283

Query: 367 -------------SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKL 413
                         ++ YLN + N+       +    P L  L++S N   ++     +L
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEI----RSLCDLPPSLEELNVSNNKLIELPALPPRL 339

Query: 414 IKRKVLDVRMNCILDLPNQ 432
              + L    N + ++P  
Sbjct: 340 ---ERLIASFNHLAEVPEL 355

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 48/243 (19%), Positives = 81/243 (33%), Gaps = 31/243 (12%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
           SL +    LE L      S N    +P++   LK L   + +   L             L
Sbjct: 85  SLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNNNLKALSD-------LPPLL 133

Query: 252 TFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGP 310
            +L +  N     +P E+     L ++ ++NN     LP+   S   +     NN+    
Sbjct: 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAA--GNNQLEE- 187

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           +P  +    +L   ++  NN     LP     L        GNN L          L  +
Sbjct: 188 LPE-LQNLPFL-TAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFL 239

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429
             +    N        +    P L  L++  NY T +    + L    V +   + + +L
Sbjct: 240 TTIYADNNLL----KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295

Query: 430 PNQ 432
           P  
Sbjct: 296 PPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 34/241 (14%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
            L D    LE +A      NN  + +P++   L FL  +   NN L    P       +L
Sbjct: 167 KLPDLPPSLEFIAA----GNNQLEELPEL-QNLPFLTAIYADNNSL-KKLP---DLPLSL 217

Query: 252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGP 310
             +    N        E+  L  L  ++ +NN     LP+   S  AL V   +N  T  
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVR--DNYLTD- 271

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
           +P       +L       N F+G L      L      +  +N +            S++
Sbjct: 272 LPELPQSLTFLDV---SENIFSG-LSELPPNL---YYLNASSNEIR----SLCDLPPSLE 320

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
            LN++ N+      E+    P+L  L  S+N+  +V    + L   K L V  N + + P
Sbjct: 321 ELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFP 373

Query: 431 N 431
           +
Sbjct: 374 D 374

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/256 (19%), Positives = 82/256 (32%), Gaps = 47/256 (18%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
            L D    LE +       NN  + +P++   L FL  +   NN L    P    +++ L
Sbjct: 209 KLPDLPLSLESIVA----GNNILEELPEL-QNLPFLTTIYADNNLL-KTLPDLPPSLEAL 262

Query: 252 TFLDLRFNSFSGPVPAEIFYLD---------------LDVLFLNNNKFSQNLPENIGSTG 296
              D         +P  + +LD               L  L  ++N+    L +   S  
Sbjct: 263 NVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLE 320

Query: 297 ALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRL 355
            L V+  NN+    +P+   R    LE L    N     +P     L       V  N L
Sbjct: 321 ELNVS--NNKLIE-LPALPPR----LERLIASFNHLA-EVPELPQNL---KQLHVEYNPL 369

Query: 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIK 415
               P     +      +L MN     VPE+      L  L +  N   +       +  
Sbjct: 370 RE-FPDIPESVE-----DLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPESV-- 418

Query: 416 RKVLDVRMNCILDLPN 431
            + L +    ++D   
Sbjct: 419 -EDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 7e-17
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 30/214 (14%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL 251
            L +  + L  L +     +  ++  P        LY L+ S+N++            +L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEI-RSLCDL---PPSL 319

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
             L++  N     +PA      L+ L  + N  ++ +PE   +   L+V    N      
Sbjct: 320 EELNVSNNKLIE-LPALPP--RLERLIASFNHLAE-VPELPQNLKQLHV--EYNPLRE-F 372

Query: 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
           P         +E L +N+     +P     L       V  N L    P       S++ 
Sbjct: 373 PDIPES----VEDLRMNSHLAE-VPELPQNL---KQLHVETNPLRE-FPDI---PESVED 420

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
           L +   +   P         KL +    +++   
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 16/144 (11%)

Query: 289 PENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVF 348
           P N+ +T        ++  T  +P      K   E     + +    P   G      V 
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 349 DVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408
            + +                   L L        +PE     P L +L  S N  T++  
Sbjct: 64  RLRDCLDR-----------QAHELELNNLGL-SSLPE---LPPHLESLVASCNSLTELPE 108

Query: 409 ECRKLIKRKVLDVRMNCILDLPNQ 432
             + L    V +  +  + DLP  
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL 132

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 4e-19
 Identities = 55/266 (20%), Positives = 88/266 (33%), Gaps = 30/266 (11%)

Query: 184 YRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPM 243
               G   SL   L++++      A+   FT  I  ++ K   +    + +  LFG   +
Sbjct: 36  VELYGGGRSLEYLLKRVDT----EADLGQFTDIIKSLSLKRLTVRAARIPSRILFG--AL 89

Query: 244 EVVNIKNLTFLDLRFNSFSGPVPAEIF---YLDLDVLFLNNNKFSQNLPE-----NIGST 295
            V+ I  L  L L     +G  P  +      DL++L L N  ++               
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 296 GALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEI----GFLSNSTVFDV 350
           G   ++ A             R    L  L L +N   G                 V  +
Sbjct: 150 GLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 351 GNNRLT---GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP-KLVNLSLSYNYFTQV 406
            N  +    G           +Q L+L+ N          C  P +L +L+LS+    QV
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 407 GPEC--RKLIKRKVLDVRMNCILDLP 430
            P+    KL    VLD+  N +   P
Sbjct: 269 -PKGLPAKL---SVLDLSYNRLDRNP 290

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 9e-13
 Identities = 41/233 (17%), Positives = 65/233 (27%), Gaps = 40/233 (17%)

Query: 187 NGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK-FLYELDVSNNKLFGGFPMEV 245
             P   L      L  L + + +       + ++   LK  L  L ++          +V
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 246 VNIKNLTFLDLRFNSFSGPVPAEIFYLD-----LDVLFLNNNKFSQNLPENIGSTGALYV 300
                L+ LDL  N   G               L VL L N                   
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---------------- 213

Query: 301 TFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNS--TVFDVGNNRLTG 357
                  +G   +        L+ L L +N               S     ++    L  
Sbjct: 214 ----ETPSGVCSALAAARV-QLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLK- 266

Query: 358 PIPHSFGCL-SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
                   L + +  L+L+ N+     P    +LP++ NLSL  N F     E
Sbjct: 267 ---QVPKGLPAKLSVLDLSYNRLDR-NPSP-DELPQVGNLSLKGNPFL--DSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 30/185 (16%), Positives = 41/185 (22%), Gaps = 44/185 (23%)

Query: 185 RFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTS-----KLKFLYELDVSNNK--- 236
                          L  L +    S+N       + S     K   L  L + N     
Sbjct: 160 HSLNFSCEQVRVFPALSTLDL----SDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD--LDVLFLNNNKFSQNLPENIGS 294
             G           L  LDL  NS      A        L+ L L+     Q +P+ + +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPA 274

Query: 295 TGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNN 353
                                      L VL L  N      P     L       +  N
Sbjct: 275 K--------------------------LSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGN 306

Query: 354 RLTGP 358
                
Sbjct: 307 PFLDS 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.4 bits (214), Expect = 5e-18
 Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 17/247 (6%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253
            +    L++L + + + N   +        L  +  +D+  N +          ++ L  
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 254 LDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTG-PI 311
           LDLR N+ +      I ++  +  +FL+ NK    LP+   +   ++   + N      I
Sbjct: 367 LDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIH--LSENRLENLDI 418

Query: 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPI-----PHSFGC 365
              + R  +L  ++   N F+ C   +      +     +G N L            F  
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC 425
           LS +Q L L  N      P +   L  L  LSL+ N  T +          ++LD+  N 
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL-SHNDLPANLEILDISRNQ 537

Query: 426 ILDLPNQ 432
           +L     
Sbjct: 538 LLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 45/279 (16%), Positives = 84/279 (30%), Gaps = 45/279 (16%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
             N T  +P++ +  +    L +S N +          ++ L  L+L        +  E 
Sbjct: 13  FCNLT-QVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 270 FY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL 327
           F    +L +L L ++K    L  +          F                   L  L L
Sbjct: 69  FRNLPNLRILDLGSSKI-YFLHPD---------AFQGLFH--------------LFELRL 104

Query: 328 -NNFFTGCLPYEIGF--LSNSTVFDVGNNRLTG-PIPHSFGCLSSMQYLNLAMNQFYGPV 383
                +  +  +  F  L   T  D+  N++    +  SFG L+S++ ++ + NQ +   
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164

Query: 384 PEI--VCQLPKLVNLSLSYNYFTQVGPEC-------RKLIKRKVLDVRMNCILDLPNQRS 434
                  Q   L   SL+ N                 + +  ++LDV  N          
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

Query: 435 REECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFD 473
                K  S++        +       +        TF 
Sbjct: 225 SNAISK--SQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 43/268 (16%), Positives = 77/268 (28%), Gaps = 30/268 (11%)

Query: 190 DFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKF--LYELDVSNNKLFGGFPMEVVN 247
              L     KL  L     +SN            L+   L    ++ N L+    ++   
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 248 IKN------LTFLDLRFNSFSGPVPAEIFYL-------------DLDVLFLNNNK---FS 285
             N      L  LD+  N ++  +                     +       +      
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 286 QNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSN 344
           QN    +  +   ++  ++      + S +      L+VL L  N            L N
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 345 STVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
             V ++  N L      +F  L  + Y++L  N       +    L KL  L L  N  T
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 405 QVGPECRKLIKRKVLDVRMNCILDLPNQ 432
                   +     + +  N ++ LP  
Sbjct: 376 ----TIHFIPSIPDIFLSGNKLVTLPKI 399

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 9e-12
 Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 55/295 (18%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEV-VNIKN 250
           +L+   + L        + N            L+ L  L++ +         E   N+ N
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 251 LTFLDLRFNSFSGPVPAEIF-------YLDLD---------------------VLFLNNN 282
           L  LDL  +     +  + F        L L                       L L+ N
Sbjct: 75  LRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 283 KFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPSSIG--RAKYLLEVLFLNNFFTGCLPYE 338
           +     L  + G   +L  + F++N+        +   + K L       N     +  +
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 339 IGFLSNS------TVFDVGNNRLTGPIP------------HSFGCLSSMQYLNLAMNQFY 380
            G   N        + DV  N  T  I              S      +       +   
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 381 GPVPEIVCQLPK--LVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLPNQ 432
            P       L +  + +L LS+ +   +       L   KVL++  N I  + ++
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 182 NGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL---- 237
           N  +         D  E L  L + + N N      P + S L  L  L +++N+L    
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 238 FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFS 285
               P       NL  LD+  N      P    ++ L VL + +NKF 
Sbjct: 521 HNDLP------ANLEILDISRNQLL--APNPDVFVSLSVLDITHNKFI 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 9e-18
 Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 38/242 (15%)

Query: 196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
           +    + L + +     F       T KLK L  L  ++NK    F    V++ +L FLD
Sbjct: 302 YNFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLD 353

Query: 256 LRFNSFSG-PVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311
           L  N  S     ++  +    L  L L+ N     +  N      L ++ F ++      
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN----- 407

Query: 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
                     L+ +   + F          L N    D+ +          F  LSS++ 
Sbjct: 408 ----------LKQMSEFSVFLS--------LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 372 LNLAMNQFYGPV-PEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDL 429
           L +A N F     P+I  +L  L  L LS     Q+ P     L   +VL++  N +  +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 430 PN 431
           P+
Sbjct: 510 PD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 44/226 (19%), Positives = 72/226 (31%), Gaps = 36/226 (15%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE 268
              NF   IP           LD+S N L         +   L  LDL        +   
Sbjct: 15  MELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDG 70

Query: 269 IFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLF 326
            +     L  L L  N   Q+L             F+                  L+ L 
Sbjct: 71  AYQSLSHLSTLILTGNPI-QSLALG---------AFSGLS--------------SLQKLV 106

Query: 327 L-NNFFTGCLPYEIGFLSNSTVFDVGNNRLT-GPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
                      + IG L      +V +N +    +P  F  L+++++L+L+ N+      
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 385 EIVCQLPKL----VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI 426
             +  L ++    ++L LS N    + P   K I+   L +R N  
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 14/201 (6%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFLDLRFNSFSGPVPA 267
           ++N   +       L  L  LD+S N L   G          +L +LDL FN     + +
Sbjct: 333 TSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 268 EIFYL-DLDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYL--L 322
               L  L+ L   ++   Q    ++       +Y+  ++                L  L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---NGLSSL 447

Query: 323 EVLFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY 380
           EVL +  N F      +I   L N T  D+   +L    P +F  LSS+Q LN+A NQ  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 381 GPVPEIVCQLPKLVNLSLSYN 401
                I  +L  L  + L  N
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 39/252 (15%), Positives = 74/252 (29%), Gaps = 21/252 (8%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVV-NIKNLTF 253
             L ++  L +    S N    I     K   L++L + NN          +  +  L  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 254 LDLRFNSFSG-----PVPAEIF----YLDLDVLFLNNNKFSQNLPENI--GSTGALYVTF 302
             L    F                   L ++   L    +  +   ++    T     + 
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHS 362
            +      +           + L L N   G  P     L +       +N+       S
Sbjct: 290 VSVTIER-VKDFSYNFG--WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF--S 342

Query: 363 FGCLSSMQYLNLAMNQ--FYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLD 420
              L S+++L+L+ N   F G   +       L  L LS+N    +      L + + LD
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 421 VRMNCILDLPNQ 432
            + + +  +   
Sbjct: 403 FQHSNLKQMSEF 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 41/260 (15%), Positives = 77/260 (29%), Gaps = 13/260 (5%)

Query: 178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL 237
           G   N       D S  + L  L       A  + +   I  + + L  +    + +  +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 238 FGGFP-MEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTG 296
                       ++L  ++ +F  F       +    L  L   +NK   N    +    
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFP-----TLKLKSLKRLTFTSNKGG-NAFSEVDLPS 348

Query: 297 ALYVTFANNEFTG-PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNR 354
             ++  + N  +     S        L+ L L  N     +      L      D  ++ 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 355 LTGPIPHS-FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC--R 411
           L      S F  L ++ YL+++          I   L  L  L ++ N F +        
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 412 KLIKRKVLDVRMNCILDLPN 431
           +L     LD+    +  L  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 51/277 (18%), Positives = 82/277 (29%), Gaps = 54/277 (19%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-FGGFPMEVVNIKNLT 252
                 L  L    A   N           LK L EL+V++N +     P    N+ NL 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 253 FLDLRFNSFSGPVPAEIFY-----------LDLD------------------VLFLNNNK 283
            LDL  N     +                 LDL                    L L NN 
Sbjct: 153 HLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 284 FSQNLPENIGSTGA--------LYVTFANNEFTGPIPSSIGRAKYL-LEVLFLN--NFFT 332
            S N+ +      A        L              S++     L +E   L   +++ 
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC-LSSMQYLNLAMNQFYGPVPEIVCQLP 391
             +      L+N + F + +  +      S+      ++ +N    QF    P +  +L 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF----PTL--KLK 325

Query: 392 KLVNLSLSYNYFTQVGPE--CRKLIKRKVLDVRMNCI 426
            L  L+ + N       E     L   + LD+  N +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSL---EFLDLSRNGL 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 35/252 (13%), Positives = 75/252 (29%), Gaps = 20/252 (7%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF 253
               + L  L+      N          S L  L +L      L       + ++K L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 254 LDLRFNSF-SGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVT-----FANNE 306
           L++  N   S  +P     L +L+ L L++NK       ++     + +       + N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYE-IGFLSNSTVFD------VGNNRLTGPI 359
               I     +   L ++   NNF +  +    I  L+   V             L    
Sbjct: 189 MNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 360 PHSFGCLSSMQYLNLAMNQ---FYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPECRKLI 414
             +   L ++      +     +   + ++   L  + + SL      +V          
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 415 KRKVLDVRMNCI 426
             ++++ +    
Sbjct: 308 HLELVNCKFGQF 319

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 19/222 (8%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
             +L+ L +    S    ++I       L  L  L ++ N +     +     + +L  L
Sbjct: 51  FPELQVLDL----SRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 105

Query: 255 DLRFNSFSGPVPAEIFYL--DLDVLFLNNNKF-SQNLPENIGSTGAL-YVTFANNEFTGP 310
                + +  +          L  L + +N   S  LPE   +   L ++  ++N+    
Sbjct: 106 VAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 311 IPSSIGRA---KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH-SFGCL 366
             + +        L   L L+      +              + NN  +  +       L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 367 SSMQYLNLAMNQF--YGPVPEIVC-QLPKLVNLSLSYNYFTQ 405
           + ++   L + +F   G + +     L  L NL++       
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 5/122 (4%)

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           IP ++  +    + L L  N       Y         V D+    +      ++  LS +
Sbjct: 22  IPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILD 428
             L L  N            L  L  L         +       L   K L+V  N I  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 429 LP 430
             
Sbjct: 139 FK 140

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 30/189 (15%)

Query: 247 NIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNE 306
            + N+T+      +F   +P  +       L L+ N   ++L            +F +  
Sbjct: 6   VVPNITY-QCMELNFYK-IPDNLP-FSTKNLDLSFNPL-RHLGSY---------SFFSFP 52

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC 365
                          L+VL L               LS+ +   +  N +      +F  
Sbjct: 53  E--------------LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT--QVGPECRKLIKRKVLDVRM 423
           LSS+Q L              +  L  L  L++++N     ++      L   + LD+  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 424 NCILDLPNQ 432
           N I  +   
Sbjct: 159 NKIQSIYCT 167

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 45/243 (18%), Positives = 84/243 (34%), Gaps = 57/243 (23%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL----FGGFPMEVVNIKNL 251
             KL  L++    SNN  + I   T      L  L +S+N+L        P       +L
Sbjct: 146 TPKLTTLSM----SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-------SL 194

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
              ++ +N  S  +   I    ++ L  ++N  +  +   +                   
Sbjct: 195 FHANVSYNLLST-LAIPIA---VEELDASHNSINV-VRGPV---------NVE------- 233

Query: 312 PSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSFGCLS 367
                     L +L L +N  T     +  +L N       D+  N L   + H F  + 
Sbjct: 234 ----------LTILKLQHNNLT-----DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427
            ++ L ++ N+    +      +P L  L LS+N+   V     +  + + L +  N I+
Sbjct: 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337

Query: 428 DLP 430
            L 
Sbjct: 338 TLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 7e-15
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 24/240 (10%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
              ++ L +      N  + +P      +  L  L +  N L    P  +  N   LT L
Sbjct: 98  AHTIQKLYM----GFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL 152

Query: 255 DLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP 312
            +  N+    +  + F     L  L L++N+ +      I S     V  + N  +  + 
Sbjct: 153 SMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV--SYNLLST-LA 208

Query: 313 SSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
             I      +E L   +N     +          T+  + +N LT            +  
Sbjct: 209 IPIA-----VEELDASHNSINV-VR--GPVNVELTILKLQHNNLT-DTA-WLLNYPGLVE 258

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
           ++L+ N+    +     ++ +L  L +S N    +    + +   KVLD+  N +L +  
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.6 bits (183), Expect = 2e-14
 Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 27/237 (11%)

Query: 210 SNNFTKSIPKMTSKLKFLY--------ELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261
             N     P+       L          +D+    ++ GF  E + + N   +  + ++ 
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTM 63

Query: 262 SGPVPAEIF--YLDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGPIPSSIGR 317
              +PA +   +  +++L LN+ +    +          +  +    N     +P  + +
Sbjct: 64  RK-LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQ 120

Query: 318 AKYLLEVLFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLA 375
              LL VL L  N  +  LP  I       T   + NN L      +F   +S+Q L L+
Sbjct: 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 376 MNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ 432
            N+    V      +P L + ++SYN  + +      +   + LD   N I  +   
Sbjct: 180 SNRL-THVDL--SLIPSLFHANVSYNLLSTL-AIPIAV---EELDASHNSINVVRGP 229

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 45/256 (17%), Positives = 90/256 (35%), Gaps = 42/256 (16%)

Query: 189 PDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL-------FGG 240
           P   L     ++E L +    ++   + I     +    + +L +  N +       F  
Sbjct: 67  PAALLDS-FRQVELLNL----NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENI-GSTGA 297
            P        LT L L  N  S  +P  IF+    L  L ++NN   + + ++   +T +
Sbjct: 122 VP-------LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTS 172

Query: 298 L-YVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRL 355
           L  +  ++N  T  +  S+  +   L    +  N  +      +         D  +N +
Sbjct: 173 LQNLQLSSNRLTH-VDLSLIPS---LFHANVSYNLLS-----TLAIPIAVEELDASHNSI 223

Query: 356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLI 414
              +         +  L L  N        ++   P LV + LSYN   ++      K+ 
Sbjct: 224 NV-VR--GPVNVELTILKLQHNNL-TDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 415 KRKVLDVRMNCILDLP 430
           + + L +  N ++ L 
Sbjct: 279 RLERLYISNNRLVALN 294

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 7e-10
 Identities = 40/294 (13%), Positives = 80/294 (27%), Gaps = 38/294 (12%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL----FGGFPMEVVNIKNLT 252
           +  L    +    S N   ++         + ELD S+N +                 LT
Sbjct: 191 IPSLFHANV----SYNLLSTLAI----PIAVEELDASHNSINVVRGPVNV-------ELT 235

Query: 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGP 310
            L L+ N+ +      + Y  L  + L+ N+    +  +       L  +  +NN     
Sbjct: 236 ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA- 292

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           +         L +VL L +N     +              + +N +   +        ++
Sbjct: 293 LNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 347

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNL-SLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428
           + L L+ N +     +         N+   + +   Q      +L             LD
Sbjct: 348 KNLTLSHNDW-----DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402

Query: 429 LPNQRSREECG--KFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPA 480
              Q         K      +C    ++  V    +  T              A
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 42/259 (16%), Positives = 78/259 (30%), Gaps = 27/259 (10%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPMEVVN 247
           D L  +  L +   N   F  S   +      + +L    + L              ++ 
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 248 IKNLTFLDLRFNSFS--GPVPAEIF-------YLDLDVLFLNNNKFSQNLPENIGSTGAL 298
           +  + F D   N      P  +++         + +  L +       +L         +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 299 -YVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFT---GCLPYEIGFLSNSTVFDVGNN 353
             +T  N++    +P S  +    LE L L  N             G   +     +  N
Sbjct: 313 KRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 354 RLT--GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR 411
            L            L ++  L+++ N F  P+P+      K+  L+LS      V     
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCI- 429

Query: 412 KLIKRKVLDVRMNCILDLP 430
                +VLDV  N +    
Sbjct: 430 -PQTLEVLDVSNNNLDSFS 447

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 22/240 (9%)

Query: 200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN 259
           L  L  F+ + ++    + K+  +   +  L +    LF         ++ +  + +  +
Sbjct: 263 LNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 260 SFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGAL----YVTFANNEFTGPIPS 313
                VP         L+ L L+ N   +   +N    GA      +  + N     +  
Sbjct: 321 KVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQK 378

Query: 314 SIGRAKYL--LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
           +      L  L  L +  N F   +P    +       ++ +  +   +        +++
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV-VKT--CIPQTLE 434

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
            L+++ N            LP+L  L +S N    + P+        V+ +  N +  +P
Sbjct: 435 VLDVSNNNL----DSFSLFLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKSVP 489

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 9/200 (4%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
           S +FT SIP   +    +  LD+S NK+      ++    NL  L L+ +  +  +  + 
Sbjct: 14  SRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDA 69

Query: 270 FY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLF 326
           FY    L+ L L++N  S       G   +L Y+    N +     +S+      L+ L 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 327 L--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
           +     F+     +   L++    ++    L      S   +  + +L L +++    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 385 EIVCQLPKLVNLSLSYNYFT 404
                L  +  L L      
Sbjct: 190 IFADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 40/222 (18%), Positives = 73/222 (32%), Gaps = 17/222 (7%)

Query: 187 NGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL---FGGFPM 243
               + LS     LE +      ++         +  LK L  LD+S N +   +     
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 244 EVVNIKNLTFLDLRFNSFSG-PVPAEIF--YLDLDVLFLNNNKFSQNLPENIGSTGAL-Y 299
                 +L  L L  N         EI     +L  L ++ N F   +P++      + +
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRF 414

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI 359
           +  ++      + + I +    LEVL ++N           FL       +  N+L    
Sbjct: 415 LNLSSTGIRV-VKTCIPQT---LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLP 467

Query: 360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
             S      +  + ++ NQ       I  +L  L  + L  N
Sbjct: 468 DASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 36/193 (18%)

Query: 191 FSLSDFLEKLEDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248
              S        L     + N+        ++   LK L  LD+S N      P      
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWP 409

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFT 308
           + + FL+L        V   I    L+VL ++NN    +    +                
Sbjct: 410 EKMRFLNLSSTGIRV-VKTCIPQ-TLEVLDVSNNNLD-SFSLFLPR-------------- 452

Query: 309 GPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLS 367
                        L+ L++  N     LP +        V  +  N+L       F  L+
Sbjct: 453 -------------LQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 368 SMQYLNLAMNQFY 380
           S+Q + L  N + 
Sbjct: 498 SLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 29/249 (11%), Positives = 80/249 (32%), Gaps = 10/249 (4%)

Query: 190 DFSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEVVNI 248
              ++     L +L      +      I ++  + L  L EL++    L       + +I
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNE 306
           +++  L L  +  +  +      +   +  L L +   +     +      +        
Sbjct: 172 RDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLA 229

Query: 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL 366
           F G + +         E+L L  +       E    + + + D   +             
Sbjct: 230 FRGSVLTDE----SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNC 425
            +++ L++     +  +  +   L K+  +++  +    V     + L   + LD+  N 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 426 ILDLPNQRS 434
           +++   + S
Sbjct: 346 MVEEYLKNS 354

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 8e-13
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 46/256 (17%)

Query: 194 SDF--LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIK 249
            D      L+ L +     ++   +I       L  L  LD+S+N L           + 
Sbjct: 44  GDLRACANLQVLIL----KSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLS 98

Query: 250 NLTFLDLRFNSFSG-PVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEF 307
           +L +L+L  N +    V +    L +L  L + N +    +             FA    
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---------DFAG--- 146

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL 366
              + S        L  L +            +  + +     +  +     +      L
Sbjct: 147 ---LTS--------LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 367 SSMQYLNLAMNQFYG------PVPEIVCQLPKLVN-----LSLSYNYFTQVGPECRKLIK 415
           SS++YL L             PV E+   + KL          S+N   ++     +L +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 416 RKVLDVRMNCILDLPN 431
            +  D  +N + D   
Sbjct: 256 VEFDDCTLNGLGDFNP 271

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 38/261 (14%), Positives = 75/261 (28%), Gaps = 28/261 (10%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFG-GFPMEVVNIKNLT 252
             L  LE L +    S+N   S+       L  L  L++  N     G      N+ NL 
Sbjct: 71  YSLGSLEHLDL----SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 253 FLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
            L +        +    F     L+ L +          +++ S   + ++T   +E   
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 310 PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
            +         +  +   +          +     S+       R +     SF  L  +
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 370 QYLNLAMNQFY-------------GPVPEIVCQLPK-----LVNLSLSYNYFTQVGPEC- 410
               L +++                   ++V +L K     +  L +   Y         
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 411 RKLIKRKVLDVRMNCILDLPN 431
             L K K + V  + +  +P 
Sbjct: 307 SLLEKVKRITVENSKVFLVPC 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 45/243 (18%), Positives = 84/243 (34%), Gaps = 57/243 (23%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL----FGGFPMEVVNIKNL 251
             KL  L++    SNN  + I   T      L  L +S+N+L        P       +L
Sbjct: 140 TPKLTTLSM----SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-------SL 188

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
              ++ +N  S  +   I    ++ L  ++N  +  +   +                   
Sbjct: 189 FHANVSYNLLST-LAIPIA---VEELDASHNSINV-VRGPV---------NVE------- 227

Query: 312 PSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSFGCLS 367
                     L +L L +N  T     +  +L N       D+  N L   + H F  + 
Sbjct: 228 ----------LTILKLQHNNLT-----DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427
            ++ L ++ N+    +      +P L  L LS+N+   V     +  + + L +  N I+
Sbjct: 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331

Query: 428 DLP 430
            L 
Sbjct: 332 TLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
           L   + +       N+  + +P       + +  L++++ ++              +  L
Sbjct: 44  LNNQKIVTF----KNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKL 98

Query: 255 DLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGP 310
            + FN+    +P  +F     L VL L  N  S  LP  I  +T  L  ++ +NN     
Sbjct: 99  YMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLER- 155

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           I     +A   L+ L L +N  T  +   +  + +    +V  N L+     +     ++
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAV 207

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429
           + L+ + N     V   V    +L  L L +N  T              +D+  N +  +
Sbjct: 208 EELDASHNSI-NVVRGPVNV--ELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI 263

Query: 430 PN 431
             
Sbjct: 264 MY 265

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 21/230 (9%)

Query: 210 SNNFTKSIPKMTSKLKFLYE--LDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPA 267
                K I          Y+  +D+    ++ GF  E + + N   +  + ++    +PA
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK-LPA 62

Query: 268 EIF--YLDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGPIPSSIGRAKYLLE 323
            +   +  +++L LN+ +    +          +  +    N     +P  + +   LL 
Sbjct: 63  ALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 120

Query: 324 VLFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381
           VL L  N  +  LP  I       T   + NN L      +F   +S+Q L L+ N+   
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-T 178

Query: 382 PVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
            V      +P L + ++SYN  + +      +   + LD   N I  +  
Sbjct: 179 HVDL--SLIPSLFHANVSYNLLSTL-AIPIAV---EELDASHNSINVVRG 222

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 24/240 (10%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
              ++ L +      N  + +P      +  L  L +  N L    P  +  N   LT L
Sbjct: 92  AHTIQKLYM----GFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTL 146

Query: 255 DLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP 312
            +  N+    +  + F     L  L L++N+ +      I S     V  + N  +  + 
Sbjct: 147 SMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV--SYNLLST-LA 202

Query: 313 SSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
             I      +E L   +N     +          T+  + +N LT            +  
Sbjct: 203 IPIA-----VEELDASHNSINV-VR--GPVNVELTILKLQHNNLT-DTA-WLLNYPGLVE 252

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
           ++L+ N+    +     ++ +L  L +S N    +    + +   KVLD+  N +L +  
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 30/190 (15%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL----FGGFPMEVVNIKNLT 252
           +  L    +    S N   ++    +    + ELD S+N +                 LT
Sbjct: 185 IPSLFHANV----SYNLLSTLAIPIA----VEELDASHNSINVVRGPVNV-------ELT 229

Query: 253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGP 310
            L L+ N+ +      + Y  L  + L+ N+    +  +       L  +  +NN     
Sbjct: 230 ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA- 286

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           +         L +VL L +N     +              + +N +   +        ++
Sbjct: 287 LNLYGQPIPTL-KVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 341

Query: 370 QYLNLAMNQF 379
           + L L+ N +
Sbjct: 342 KNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 1/134 (0%)

Query: 299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP 358
           Y           I S++       +V            +E   L+N  +    N+ +   
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60

Query: 359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRK 417
                     ++ LNL   Q              +  L + +N    + P   + +    
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 418 VLDVRMNCILDLPN 431
           VL +  N +  LP 
Sbjct: 121 VLVLERNDLSSLPR 134

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.6 bits (185), Expect = 1e-14
 Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 12/291 (4%)

Query: 149 NTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHA 208
            T +                   +   V   D      N      +  +      +    
Sbjct: 272 GTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKEC 331

Query: 209 N-SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPA 267
               +  +   + ++  + L+  ++S  K       E+ + K L  L+         +  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIIL 390

Query: 268 EIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL 327
            +  LD  +      ++   L + +    A Y+    ++F             +  +   
Sbjct: 391 LMRALDPLLYEKETLQYFSTL-KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 328 NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV 387
           +   T  L + +  L   T  D+ +NRL   +P +   L  ++ L  + N     V  + 
Sbjct: 450 HKDLT-VLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGV- 504

Query: 388 CQLPKLVNLSLSYNYFTQVGPECRKLIKR---KVLDVRMNCILDLPNQRSR 435
             LP+L  L L  N   Q     + L+      +L+++ N +      + R
Sbjct: 505 ANLPRLQELLLCNNRLQQS-AAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 210 SNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE 268
             N  K++ +   +    L EL+++ N +    P    N+ NL  L LR N     +P  
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLG 98

Query: 269 IFY--LDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEV 324
           +F    +L  L ++ NK    L + +      L  +   +N+    I          LE 
Sbjct: 99  VFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQ 156

Query: 325 LFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383
           L L     T      +  L    V  + +  +     +SF  L  ++ L ++   +   +
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 384 PEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLPN 431
                    L +LS+++   T V     R L+  + L++  N I  +  
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 9/243 (3%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252
                 L +L      SN     IP    + L  L +LD+S NK+         ++ NL 
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 253 FLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
            L++  N     +    F     L+ L L     +    E +     L  +   +     
Sbjct: 132 SLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS 368
            I     +  Y L+VL + +  +   +     +  N T   + +  LT     +   L  
Sbjct: 191 -IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 369 MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCIL 427
           +++LNL+ N        ++ +L +L  + L       V P   R L   +VL+V  N + 
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 428 DLP 430
            L 
Sbjct: 310 TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 54/232 (23%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL----FGGFPMEVVNIK 249
               ++L  L +   +   +  ++         L  L +++  L    +        ++ 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV----RHLV 248

Query: 250 NLTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEF 307
            L FL+L +N  S  +   + +  L L  + L   + +  +             F    +
Sbjct: 249 YLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLA-VVEPY---------AFRGLNY 297

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGC 365
                         L VL +  N  T  L   +   + N     + +N L         C
Sbjct: 298 --------------LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA--------C 334

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLP--------KLVNLSLSYNYFTQVGPE 409
              + ++     +      +  C  P        K     L  NYFT     
Sbjct: 335 DCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR 386

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
           G  + + + D+G NR+       F     ++ L L  N      P     L  L  L L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 400 YNYFTQVGPEC-RKLIKRKVLDVRMNCILDLPNQ 432
            N    +       L     LD+  N I+ L + 
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 2e-13
 Identities = 71/443 (16%), Positives = 138/443 (31%), Gaps = 102/443 (23%)

Query: 121 FASERIQLAFK-VIQRFKKRITYD---------PQGIANT------WMGPDVCNK-YKGF 163
           F +   Q  +K ++  F+     +         P+ I +        M  D  +   + F
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 164 --VCDVRPDIKKKAVAGVDFNGYRF---------NGPDFSLSDFLEKLEDLAIFHANSNN 212
             +   + ++ +K V  V    Y+F           P      ++E+ + L   + ++  
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YNDNQV 125

Query: 213 FTK---SIPKMTSKLK-FLYELDVSNN-KLFG--GFPMEVVNIKNLTFLDLRFNSFSGPV 265
           F K   S  +   KL+  L EL  + N  + G  G          +             +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKM 180

Query: 266 PAEIFYLDL-------DVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRA 318
             +IF+L+L        VL     +  Q L   I          + ++ +  I   I   
Sbjct: 181 DFKIFWLNLKNCNSPETVL-----EMLQKLLYQIDPNWT-----SRSDHSSNIKLRIHSI 230

Query: 319 KYLLEVLFLNNFFTGCL-------------PYEIG----FLS-NSTVFDVGNNRLTGPIP 360
           +  L  L  +  +  CL              + +       +    V D  +   T  I 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 361 --HSFGCLS---SMQYLNLAMNQFYGPVPEIVCQL-PKLVNL---SLS-----YNYFTQV 406
             H    L+       L   ++     +P  V    P+ +++   S+      ++ +  V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 407 GPECRKLIKRKVLDVRMNCILDLPNQRSR-EECGKFFSESKKCPNERSLTLVPCARNRST 465
              C KL    +++  +N  L+    R   +     F  S   P    L+L+     +S 
Sbjct: 351 --NCDKL--TTIIESSLNV-LEPAEYRKMFDRLS-VFPPSAHIP-TILLSLIWFDVIKSD 403

Query: 466 VN--LTETFDKKLTAPAPSPRTY 486
           V   + +     L    P   T 
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTI 426

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 44/243 (18%), Positives = 73/243 (30%), Gaps = 38/243 (15%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           +     L     + N     +    +    L  LD S NK+     ++V   K L  L+ 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 257 RFNSFSGPVPAEIFYLD------LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
             N         I  LD      L  L  ++NK +  +   +     L Y   + N  T 
Sbjct: 199 DTN--------NITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT- 246

Query: 310 PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
            +  S       L  L         +   +   +    F     R    +       + +
Sbjct: 247 ELDVSTLSK---LTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQL 299

Query: 370 QYLNLAMNQFYGPVPEI-VCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD 428
             L+           E+ + Q PKLV L L+    T++  +     K K L      I D
Sbjct: 300 YLLDCQAAGI----TELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD 353

Query: 429 LPN 431
             +
Sbjct: 354 FSS 356

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 47/237 (19%), Positives = 87/237 (36%), Gaps = 28/237 (11%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
            E+L  L     ++++ T  +  +  KL  L +L  ++N +     +++    NLT+L  
Sbjct: 38  EEQLATLTSLDCHNSSIT-DMTGI-EKLTGLTKLICTSNNITT---LDLSQNTNLTYLAC 92

Query: 257 RFNSFSG-PVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSS 314
             N  +   V        L  L  + NK +  L   +     L Y+  A N  T  I   
Sbjct: 93  DSNKLTNLDVTPLT---KLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EID-- 143

Query: 315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL 374
           +     L E+    N     L   +   +  T  D   N++T  +         +  LN 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNC 198

Query: 375 AMNQFYGPVPEI-VCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
             N     + ++ + Q  +L  L  S N  T++  +   L +    D  +N + +L 
Sbjct: 199 DTNN----ITKLDLNQNIQLTFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLTELD 249

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 33/238 (13%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
                  A         T +I     +L  L  LD  N+ +       +  +  LT L  
Sbjct: 20  FASEVAAA----FEMQATDTIS--EEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLIC 71

Query: 257 RFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSS 314
             N+ +     ++    +L  L  ++NK + NL   +     L Y+    N+ T  +  S
Sbjct: 72  TSNNITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS 124

Query: 315 IGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373
                  L  L    N  T     ++   +  T  D   N+    +       + +  L+
Sbjct: 125 QNPL---LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLD 176

Query: 374 LAMNQFYGPVPEI-VCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
            + N+      E+ V Q   L  L+   N  T++  +  + I+   LD   N + ++ 
Sbjct: 177 CSFNKIT----ELDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID 228

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 24/215 (11%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           + + + L   + ++NN T  +    ++   L  LD S+NKL     ++V  +  LT+ D 
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDC 240

Query: 257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ-NLPENIGSTGALYVTFANNEFTGPIPSSI 315
             N  +  +        L  L        + +L  N                   +  + 
Sbjct: 241 SVNPLT-ELDVSTL-SKLTTLHCIQTDLLEIDLTHNTQLIY-FQAEGCRKIKELDVTHNT 297

Query: 316 GRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL 374
                 L +L       T  L   +          + N  LT  +       + ++ L+ 
Sbjct: 298 -----QLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSC 346

Query: 375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
                      +  ++P L N   +      +  E
Sbjct: 347 VNAHIQD-FSSV-GKIPALNNNFEAEGQTITMPKE 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 21/173 (12%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           +     L +    +   T  +    S+   L  L ++N +L     ++V +   L  L  
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSC 346

Query: 257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEF------TGP 310
                     +      L+  F    +    +P+   +  +L +  + +           
Sbjct: 347 VNAHIQD-FSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF 363
            P   G        +   N     L  +   ++ +  F   N  + G +   F
Sbjct: 405 EPGDGGVYDQATNTITWEN-----LSTDNPAVTYT--FTSENGAIVGTVTTPF 450

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 22/166 (13%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L     L  F A      K +    +    LY LD     +     +++     L +L L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYL 325

Query: 257 RFNSFSGPVPAEIFYLD------LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGP 310
                +         LD      L  L   N     +               A  +    
Sbjct: 326 NNTELT--------ELDVSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTIT- 375

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
           +P        L   +  +       P  I    +  V+D   N +T
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFGNPMNI-EPGDGGVYDQATNTIT 420

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 25/265 (9%)

Query: 186 FNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLY-----ELDVSNNKL--- 237
            N   + LS   +   +  + +   NN   +       L+ ++        +SN KL   
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 238 --FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY----LDLDVLFLNNNKFSQNLPEN 291
             F  F     ++K L+   +  + F  P  + I+     +++    ++  +    L  +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321

Query: 292 IGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGF---LSNSTV 347
             S   L++ F+NN  T  +  + G    L E L L  N     L         + +   
Sbjct: 322 KISPF-LHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKE-LSKIAEMTTQMKSLQQ 378

Query: 348 FDVGNNRLTGPIPH-SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV 406
            D+  N ++            S+  LN++ N     +    C  P++  L L  N    +
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKIKSI 436

Query: 407 GPECRKLIKRKVLDVRMNCILDLPN 431
             +  KL   + L+V  N +  +P+
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 37/307 (12%), Positives = 89/307 (28%), Gaps = 39/307 (12%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254
             +  L    +       + +        L+      +            ++++   T  
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEG--LQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 255 DLRFNSFSGPVPAEIFYLDLDVLF------------LNNNKFSQN----LPENIGSTGAL 298
           +L  ++    +        L +L             LNN + + N    + + +  T   
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 299 YVTFANNEFTGPIPSS-IGRAKYLLEVLFLNNFFTGCL--PYEIGF--LSNSTVFDVGNN 353
           Y + +N +  G +       +   L+ L ++   +     P    +   SN  + +   +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 354 RLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR-- 411
                       +S   +L+ + N     V E    L +L  L L  N   ++       
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 412 -KLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTE 470
            ++   + LD+  N +     +               C   +SL  +  + N  T  +  
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGD-------------CSWTKSLLSLNMSSNILTDTIFR 417

Query: 471 TFDKKLT 477
               ++ 
Sbjct: 418 CLPPRIK 424

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 45/195 (23%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL------FGGFPMEVVNI 248
             +     L     ++N  T ++ +    L  L  L +  N+L                +
Sbjct: 321 SKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT----QM 373

Query: 249 KNLTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNE 306
           K+L  LD+  NS S             L  L +++N  +  +   +              
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR----------- 422

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH-SFG 364
                          ++VL L +N     +P ++  L      +V +N+L   +P   F 
Sbjct: 423 ---------------IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFD 465

Query: 365 CLSSMQYLNLAMNQF 379
            L+S+Q + L  N +
Sbjct: 466 RLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 48/287 (16%), Positives = 86/287 (29%), Gaps = 59/287 (20%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-----FGGFPMEVVNIK 249
            F ++LE L +    S+N    I         L  LD+S N          F     N+ 
Sbjct: 66  KFNQELEYLDL----SHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFG----NMS 115

Query: 250 NLTFLDLRFNSFSGPVPAEIFYL----------------------------DLDVLFLNN 281
            L FL L            I +L                             L ++F  N
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 282 NKFSQNLPENIGSTGALYVT-------FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG- 333
            +F   L  ++ +   L ++            +   I + +     L  +   N   T  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 334 CLPYEIGFLSNSTV--FDVGNNRLTGPI-----PHSFGCLSSMQYLNLAMNQFYGPVPEI 386
                +  + ++TV  F + N +L G +      +S   L ++    +  + F  P   I
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 387 VCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLPNQ 432
                 +   + + +    V   C  K+     LD   N + D   +
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 44/257 (17%), Positives = 75/257 (29%), Gaps = 25/257 (9%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL----FGGFPMEVVNIK 249
           SD    L  L I   + N        +    + L  LD+S+NKL                
Sbjct: 39  SDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT-------V 90

Query: 250 NLTFLDLRFNSF-SGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEF 307
           NL  LDL FN+F + P+  E   +  L  L L+     ++    I       V     E 
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 308 TGPIPS----SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF 363
            G             + L  V   N  F   L   +  ++N  + ++          +  
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 364 GCLSS------MQYLNLAMNQFYGPVPEIVCQLPKLVNLS-LSYNYFTQVGPECRKLIKR 416
             L+       +  L L   +        + QL     +   S +     G    +    
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 417 KVLDVRMNCILDLPNQR 433
               ++   I  + +  
Sbjct: 271 SGTSLKALSIHQVVSDV 287

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 250 NLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT 308
           +   +D   N     VP ++      +L ++ N  S+    +I S   L  +  ++N   
Sbjct: 1   SEFLVDRSKNGLIH-VPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 309 GPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCL 366
             +  S+ +    LE L L +N     +        N    D+  N     PI   FG +
Sbjct: 59  Y-LDISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP 408
           S +++L L+           +  L     L +    + +   
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 11/120 (9%)

Query: 311 IPSSIGRAKYLLEVLFLN-NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           +P  + +      +L ++ N+ +     +I  LS   +  + +NR+       F     +
Sbjct: 15  VPKDLSQK---TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR---KLIKRKVLDVRMNCI 426
           +YL+L+ N+    +         L +L LS+N F  + P C+    + + K L +    +
Sbjct: 72  EYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 12/202 (5%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFLDLRFNSFSGPVPA 267
           + N  ++        L  L  L +S+N++     + V    + L +LDL  N     +  
Sbjct: 29  SQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLVK-ISC 86

Query: 268 EIFYLDLDVLFLNNNKFSQNLPENIGSTGAL----YVTFANNEFTGPIPSSIGRAKYLLE 323
               ++L  L L+ N F   LP      G +    ++  +           I        
Sbjct: 87  HPT-VNLKHLDLSFNAF-DALPIC-KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV 383
           +L L   +      +   L +     +     T    H    +S     NL ++     +
Sbjct: 144 LLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 384 PEIVCQLPKLVNLSLSYNYFTQ 405
            +  C     +   L  N    
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLS 223

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 63.6 bits (154), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PA         PPP   + P P P     PP   P     P P P P P P       P
Sbjct: 42  PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 22/66 (33%), Positives = 23/66 (34%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P     PPP P  EP   P P PEP    P     P P P P P P      +P    
Sbjct: 45  LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 104

Query: 119 GPFASE 124
            P  S 
Sbjct: 105 KPVESR 110

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 18/59 (30%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             PA    P    PP      P P     P PP   P     P P P P P+P K    
Sbjct: 40  VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQE 98

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 16/59 (27%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               P+   PPP P     P P P        P     P P P P P P  +  + P  
Sbjct: 44  DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 20/59 (33%), Positives = 23/59 (38%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P       P    PP+ + PPP P     P P P P PP   P     P P+P   P P
Sbjct: 34  PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 92

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 21/66 (31%), Positives = 22/66 (33%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P P   P P P P P  P   P     P P P P P P       P     P    P 
Sbjct: 53  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPA 112

Query: 119 GPFASE 124
            PF + 
Sbjct: 113 SPFENT 118

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 61.7 bits (149), Expect = 4e-11
 Identities = 17/59 (28%), Positives = 19/59 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               P     PPP P     P P P P  P   P     P P P P P P +  +    
Sbjct: 43  ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 101

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 61.7 bits (149), Expect = 5e-11
 Identities = 16/62 (25%), Positives = 18/62 (29%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
               P      P P     P PP   P+    P P P P P P       P+    P   
Sbjct: 50  AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 109

Query: 119 GP 120
            P
Sbjct: 110 RP 111

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 61.7 bits (149), Expect = 6e-11
 Identities = 18/60 (30%), Positives = 20/60 (33%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
              P       P     P    PPP   + P P P P P PP   P     P+P   P P
Sbjct: 31  PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 90

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 60.9 bits (147), Expect = 9e-11
 Identities = 16/59 (27%), Positives = 17/59 (28%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               P    PP     P  P   P     P P PP   P     P P P P+P      
Sbjct: 38  TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 96

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 15/65 (23%), Positives = 19/65 (29%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P        P   P     P P PP+        P P P P P P      +P +   P 
Sbjct: 48  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

Query: 119 GPFAS 123
               +
Sbjct: 108 ESRPA 112

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 58.2 bits (140), Expect = 8e-10
 Identities = 14/65 (21%), Positives = 15/65 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P   PE  P P P P    P         P P P P       P     P          
Sbjct: 57  PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFE 116

Query: 119 GPFAS 123
               +
Sbjct: 117 NTAPA 121

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 17/51 (33%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P P  P       P   EP     PPP P   P P P P P P    P   
Sbjct: 29  PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 79

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 15/62 (24%), Positives = 17/62 (27%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P PE  P PP     +   P P     P P       P     P    P  P   +  
Sbjct: 61  PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAP 120

Query: 119 GP 120
             
Sbjct: 121 AR 122

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 16/58 (27%), Positives = 18/58 (31%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               E   P  P    +  P     P    PPP P   P P P P P PP+       
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 80

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 15/65 (23%), Positives = 19/65 (29%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                    PP   P  I  P P P+P   P       P     P    P  P +  +P 
Sbjct: 62  EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121

Query: 119 GPFAS 123
              +S
Sbjct: 122 RLTSS 126

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 67  PPPPPPPEPIC----PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            P P  P  +         PP+ + PPP P   P P P P P PP   P     P
Sbjct: 28  LPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 15/59 (25%), Positives = 17/59 (28%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                +        P  + PP     P  P   P P P P P PP   P       P P
Sbjct: 28  LPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 11/65 (16%), Positives = 15/65 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                    P PP   P+    P P+P   P P       P     P          +  
Sbjct: 60  EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTA 119

Query: 119 GPFAS 123
               +
Sbjct: 120 PARLT 124

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 15/65 (23%), Positives = 16/65 (24%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P PE     P   E   P P P           P     P    P  P     P    
Sbjct: 65  PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 124

Query: 119 GPFAS 123
              A+
Sbjct: 125 SSTAT 129

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 12/62 (19%), Positives = 14/62 (22%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P  E       P     P P P + +   P     P    P  P           S  
Sbjct: 69  PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTA 128

Query: 119 GP 120
             
Sbjct: 129 TA 130

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 13/66 (19%), Positives = 15/66 (22%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P P   PP   P     P P P     P       P     P    P           
Sbjct: 63  PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 122

Query: 119 GPFASE 124
              ++ 
Sbjct: 123 LTSSTA 128

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 10/65 (15%), Positives = 14/65 (21%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                     P    +P   P P P+P+      P     P    P  P           
Sbjct: 66  EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 125

Query: 119 GPFAS 123
               +
Sbjct: 126 STATA 130

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 14/65 (21%), Positives = 18/65 (27%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
               P+  P     P+P   P P P       P     P    P  P     P +  S  
Sbjct: 68  IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSST 127

Query: 119 GPFAS 123
              A+
Sbjct: 128 ATAAT 132

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 13/81 (16%), Positives = 21/81 (25%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  AP     P P P+P   P    +        P    P  P     P        +  
Sbjct: 72  PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131

Query: 119 GPFASERIQLAFKVIQRFKKR 139
                  +    + + R + +
Sbjct: 132 TSKPVTSVASGPRALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 13/65 (20%), Positives = 15/65 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P P P    P         P P P         P     P    P  P     P   +  
Sbjct: 67  PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSS 126

Query: 119 GPFAS 123
              A+
Sbjct: 127 TATAA 131

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 18/62 (29%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
             G  P   +         P    P     + P    PP    PPP P   P P P   P
Sbjct: 10  SSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIP 69

Query: 116 SP 117
            P
Sbjct: 70  EP 71

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 11/78 (14%), Positives = 18/78 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                E       P E     P                    P       PR      P 
Sbjct: 93  VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

Query: 119 GPFASERIQLAFKVIQRF 136
            P  ++ +++  +V  +F
Sbjct: 153 YPARAQALRIEGQVKVKF 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 49/220 (22%), Positives = 79/220 (35%), Gaps = 36/220 (16%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF---GGFPMEVVNIKNLTF 253
           L +L  L++   N  +F     +       L  LD+S N +      F    + ++ L  
Sbjct: 51  LTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQLEH 105

Query: 254 LDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPI 311
           LD + ++        +F    +L  L +++          I              F G +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI--------------FNG-L 149

Query: 312 PSSIGRAKYLLEVLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
            S        LEVL +  N+F    LP     L N T  D+   +L    P +F  LSS+
Sbjct: 150 SS--------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
           Q LN++ N F+         L  L  L  S N+      +
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 12/190 (6%)

Query: 250 NLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQ---NLPENIGSTGALYVTFAN 304
           + T L+L  N     +P  +F     L  L L++N  S        + G+T   Y+  + 
Sbjct: 29  SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 305 NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGF--LSNSTVFDVGNNRLTGPIPHS 362
           N     + S+    + L  + F ++     +     F  L N    D+ +          
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIV-CQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLD 420
           F  LSS++ L +A N F       +  +L  L  L LS     Q+ P     L   +VL+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 421 VRMNCILDLP 430
           +  N    L 
Sbjct: 206 MSHNNFFSLD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ--FYGPVPEIVCQLPKLVNLS 397
           G  S++T  ++ +N+L       F  L+ +  L+L+ N   F G   +       L  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 398 LSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
           LS+N    +      L + + LD + + +  + 
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 16/65 (24%), Positives = 16/65 (24%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           G G        P                    P   PP    PPPP     PPP    PP
Sbjct: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192

Query: 116 SPFGP 120
               P
Sbjct: 193 PGMRP 197

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 62.7 bits (152), Expect = 2e-11
 Identities = 17/67 (25%), Positives = 18/67 (26%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           GG       P+                       PP    PPPP     PPP     PP 
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPG 194

Query: 114 PPSPFGP 120
              P GP
Sbjct: 195 MRPPMGP 201

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 17/67 (25%), Positives = 17/67 (25%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                 P                I   P    P    PPPP     PPP    PPP   P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 113 KPPSPFG 119
               P G
Sbjct: 198 PMGPPMG 204

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 17/66 (25%), Positives = 17/66 (25%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            G    A A               PP     P       PPP    PPP   PP   P  
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

Query: 114 PPSPFG 119
            P   G
Sbjct: 205 IPPGRG 210

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 16/65 (24%), Positives = 16/65 (24%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G GG                            P   PP    PPPP     PPP    PP
Sbjct: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192

Query: 113 KPPSP 117
               P
Sbjct: 193 PGMRP 197

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 20/68 (29%), Positives = 20/68 (29%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            G G   A A          P    P    P P      PPP    PPP   PP  P   
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

Query: 113 KPPSPFGP 120
            PP    P
Sbjct: 205 IPPGRGTP 212

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 17/67 (25%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            G  GP             P+                   P   PP    PPPP  R   
Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184

Query: 114 PPSPFGP 120
           PP   GP
Sbjct: 185 PPGMMGP 191

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 21/63 (33%), Positives = 21/63 (33%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             A A     P   PP    PPPP      PP    PPP   PP  PP   P     P  
Sbjct: 155 AAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214

Query: 118 FGP 120
             P
Sbjct: 215 MPP 217

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 19/68 (27%), Positives = 20/68 (29%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                  A        P   P     PPPP     PPP    PPP   PP  PP    P 
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPG 208

Query: 113 KPPSPFGP 120
           +      P
Sbjct: 209 RGTPMGMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 12/63 (19%), Positives = 12/63 (19%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
            P      P      P                    P   PP    PPPP     P P  
Sbjct: 129 GPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188

Query: 120 PFA 122
              
Sbjct: 189 MGP 191

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPP------PP 106
                  AP         PPP      PPP     PP   PP  PP   PP        P
Sbjct: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216

Query: 107 PPPRPPKPPSPFG 119
           PP   P PP   G
Sbjct: 217 PPGMRPPPPGMRG 229

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 12/71 (16%), Positives = 12/71 (16%)

Query: 52  IGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           I  G   P        P      P      P                    P   PP R 
Sbjct: 114 IPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG 173

Query: 112 PKPPSPFGPFA 122
             PP       
Sbjct: 174 GPPPPMGRGAP 184

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 14/72 (19%)

Query: 51  IIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           I  G     APA    P             P                    P   PP   
Sbjct: 114 IPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG 173

Query: 111 PPKPPSPFGPFA 122
            P PP   G   
Sbjct: 174 GPPPPMGRGAPP 185

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 11/69 (15%), Positives = 13/69 (18%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G G     P P+       P   +  P                           P   PP
Sbjct: 111 GRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPP 170

Query: 113 KPPSPFGPF 121
               P  P 
Sbjct: 171 GRGGPPPPM 179

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 11/91 (12%), Positives = 16/91 (17%)

Query: 30  LHYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPP 89
           +   V           +       GG      A    P   P P+       P   +  P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 90  PPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                 P                   +P   
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 12/68 (17%), Positives = 12/68 (17%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           GG G G A         P P  P     P      P      P                 
Sbjct: 102 GGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASI 161

Query: 113 KPPSPFGP 120
                  P
Sbjct: 162 AGAPTQYP 169

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 19/58 (32%), Positives = 19/58 (32%)

Query: 52  IGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
               G G  P P     PPP      P   PP       PP    P   PPP   PPP
Sbjct: 167 QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 9/61 (14%), Positives = 9/61 (14%)

Query: 63  PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFA 122
           P   P P  P     P      P      P                        P G   
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174

Query: 123 S 123
            
Sbjct: 175 P 175

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 39/287 (13%), Positives = 72/287 (25%), Gaps = 27/287 (9%)

Query: 149 NTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAI--F 206
           N  +  + C +   F+ ++        V                   +   +E L I   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 207 HANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF-SGPV 265
                   +      + LK L    V N                +    L  +      +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 266 PAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEV 324
                      L    N F+ ++ +   +   L  +    N             K +  +
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSL 405

Query: 325 LFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
             L+      L                          +     S+  LNL+ N   G V 
Sbjct: 406 ETLDVSLN-SLNS-------------------HAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 385 EIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
              C  PK+  L L  N    +  +   L   + L+V  N +  +P+
Sbjct: 446 R--CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 48/323 (14%), Positives = 86/323 (26%), Gaps = 64/323 (19%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG-GFPMEVVNIKNLTF 253
            F + LE L +    S+N  ++I      +  L  LD+S N         E  N+  LTF
Sbjct: 97  LFNQDLEYLDV----SHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150

Query: 254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFS--------------------------QN 287
           L L    F       + +L L  + L+   +                            +
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 288 LPENIGSTGALYVTFANNE--------FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEI 339
           +  N+      ++  +N +            +         L   L        C     
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 340 GFLSNSTV--FDVGNNRLTGPIP-----HSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK 392
            F     V   ++ N  +T  I      +S   L S+   ++    F      +     +
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 393 LVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNE 451
           +    LS +    +   C         L+   N   D                 + C   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV--------------FQGCSTL 376

Query: 452 RSLTLVPCARNRSTVNLTETFDK 474
           + L  +   RN    N  +    
Sbjct: 377 KRLQTLILQRNGLK-NFFKVALM 398

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 35/263 (13%), Positives = 68/263 (25%), Gaps = 20/263 (7%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPK------MTSKLKFLYELDVSNNKLFGGFPMEVVNIKN 250
           L  +  L +     +  +  I               L+ +   N+       M V  + +
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 251 LTFLDLRFNSFSGPVPAEIFY-----LDLDVLFLNNNKFSQN----LPENIGSTGALYVT 301
           L   +++ N  +                L  + L + + +      L +        Y+ 
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 302 FANNEFTGPIPSSIGR-AKYLLEVLFL----NNFFTGCLPYEIGFLSNSTVFDVGNNRLT 356
             N   T  I       ++  L+ L +    N  F           +   +  +  +   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKR 416
                     SS  +LN   N F   V +    L +L  L L  N               
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 417 KVLDVRMNCILDLPNQRSREECG 439
             L+     +  L +      C 
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCA 425

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 34/187 (18%)

Query: 199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFLDL 256
                   +   N FT S+ +  S LK L  L +  N L  F    +   N+ +L  LD+
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 257 RFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSS 314
             NS +             + VL L++N  + ++   +                      
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK------------------- 451

Query: 315 IGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYL 372
                  ++VL L NN     +P ++  L      +V +N+L   +P   F  L+S+QY+
Sbjct: 452 -------VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502

Query: 373 NLAMNQF 379
            L  N +
Sbjct: 503 WLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC-QLPKLVNLSL 398
                +    +  N ++         LS ++ L L+ N+    +   V      L  L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDV 107

Query: 399 SYNYFTQVGPECRKLIKRKVLDVRMNCILDLP 430
           S+N    +   C  +   + LD+  N    LP
Sbjct: 108 SHNRLQNI--SCCPMASLRHLDLSFNDFDVLP 137

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 48/223 (21%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPMEVVNIK 249
              L  L   + + N+    IP        L EL + +N++       F G         
Sbjct: 98  FSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR------- 147

Query: 250 NLTFLDLRFNSF-SGPVPAEIFY-LDLDVLFLNNNKFSQNLPENI-GSTGALYVTFANNE 306
           N+  +++  N   +       F  L L+ L ++  K +  +P+++  +   L+    +N+
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNELH--LDHNK 204

Query: 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL 366
               I          L  L L +                       N++      S   L
Sbjct: 205 IQA-IELEDLLRYSKLYRLGLGH-----------------------NQIRMIENGSLSFL 240

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
            +++ L+L  N+    VP  +  L  L  + L  N  T+VG  
Sbjct: 241 PTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 16/190 (8%)

Query: 249 KNLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANN 305
            + T LDL+ N  S  +  + F     L  L L NNK S+   +       L  +  + N
Sbjct: 54  PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 306 EFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLT-GPIPH-S 362
                IP ++  +   L  L + +N            L N    ++G N L        +
Sbjct: 113 HLVE-IPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDV 421
           F  L  + YL ++  +  G +P+ +     L  L L +N    +  E   +  K   L +
Sbjct: 169 FDGL-KLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 422 RMNCILDLPN 431
             N I  + N
Sbjct: 225 GHNQIRMIEN 234

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 42/217 (19%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL---------FGGFPMEVV 246
              L +L     + N     +PK   S L+ +  +++  N L         F G  +  +
Sbjct: 122 PSSLVEL---RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 247 NI-------------KNLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPEN 291
            I             + L  L L  N     +  E    Y  L  L L +N+    +   
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIR-MIENG 235

Query: 292 I--GSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG------CLPYEIGFLS 343
                     +   NN+ +  +P+ +   K L  V    N  T       C        +
Sbjct: 236 SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 344 NSTVFDVGNNRLTGPI--PHSFGCLSSMQYLNLAMNQ 378
                 + NN +      P +F C++    +     +
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 52/229 (22%), Positives = 80/229 (34%), Gaps = 61/229 (26%)

Query: 210 SNNFTKSIPKMT-SKLKFLYELDVSNNKL----FGGFPMEVVNIKNLTFLDLRFNSFSGP 264
             N  + I   +   L+ L  L +S N +     G F      + NL  L+L  N  +  
Sbjct: 72  HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNRLTT- 126

Query: 265 VPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
           +P   F     L  L+L NN    ++P            F        IPS        L
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIE-SIPSY---------AFNR------IPS--------L 162

Query: 323 EVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP 382
             L L                          RL+     +F  LS+++YLNLAM      
Sbjct: 163 RRLDLGE----------------------LKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199

Query: 383 VPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
           +P +   L KL  L LS N+ + + P   + L+  + L +  + I  + 
Sbjct: 200 IPNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
           G  +N+ + ++  N++     +SF  L  ++ L L+ N            L  L  L L 
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 400 YNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
            N  T +       L K K L +R N I  +P
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 16/65 (24%), Positives = 17/65 (26%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            A  P         P+P  PPP    P   P              P   P  P    S  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 119 GPFAS 123
           G F S
Sbjct: 75  GGFFS 79

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 14/67 (20%), Positives = 16/67 (23%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
                 +   PPPPPP    P   P              P   P  P             
Sbjct: 21  GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80

Query: 128 LAFKVIQ 134
           L+  V Q
Sbjct: 81  LSNAVKQ 87

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 14/63 (22%), Positives = 15/63 (23%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           G     +   PPPPPP    P   P              P   P  P P         S 
Sbjct: 21  GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80

Query: 118 FGP 120
              
Sbjct: 81  LSN 83

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 13/72 (18%), Positives = 16/72 (22%), Gaps = 3/72 (4%)

Query: 66  CPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
            P           PPPPP        P   P              P   P+   P +S  
Sbjct: 18  LPNGYMTDLQRPQPPPPPPS---AASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 126 IQLAFKVIQRFK 137
                 +    K
Sbjct: 75  GGFFSSLSNAVK 86

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 13/64 (20%), Positives = 14/64 (21%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            G       P+  PPPP    P   P              P   P  P P          
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 114 PPSP 117
             S 
Sbjct: 80  SLSN 83

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 11/65 (16%), Positives = 17/65 (26%)

Query: 77  CPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRF 136
            P     +   P PPPPPP    P   P        +  +     +             F
Sbjct: 18  LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77

Query: 137 KKRIT 141
              ++
Sbjct: 78  FSSLS 82

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 46/252 (18%), Positives = 91/252 (36%), Gaps = 67/252 (26%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
            +   +    +    + T ++ +  ++L  + ++  +N+ +     ++   + N+T L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 72

Query: 257 RFNSFSGPVPAEIFYLD----LDVLFLNNNKFS-----QNLPENIGSTGALYVTFANNEF 307
             N  +     +I  L     L  LFL+ NK       ++L +                 
Sbjct: 73  NGNKLT-----DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK----------------- 110

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSF 363
                         L+ L L +N  +     +I  L +        +GNN++T       
Sbjct: 111 --------------LKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKITDITV--L 149

Query: 364 GCLSSMQYLNLAMNQFYGPVPEI--VCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDV 421
             L+ +  L+L  NQ    + +I  +  L KL NL LS N+ + +      L    VL++
Sbjct: 150 SRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYLSKNHISDLRAL-AGLKNLDVLEL 204

Query: 422 RMNCILDLPNQR 433
                L+ P   
Sbjct: 205 FSQECLNKPINH 216

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 82/303 (27%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252
             ++ L ++     N N     +  +   + LK L  L +  NK+     ++  ++K L 
Sbjct: 59  QGIQYLPNVTKLFLNGNK----LTDIKPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLK 112

Query: 253 FLDLRFNSFSGPVPAEIFYLD----LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFT 308
            L L  N  S     +I  L     L+ L+L NNK                         
Sbjct: 113 SLSLEHNGIS-----DINGLVHLPQLESLYLGNNK------------------------- 142

Query: 309 GPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS 368
                       + ++  L+             L+      + +N+++  I      L+ 
Sbjct: 143 ------------ITDITVLSR------------LTKLDTLSLEDNQISD-IV-PLAGLTK 176

Query: 369 MQYLNLAMNQFYGPVPEI--VCQLPKLVNLSLSYNYFTQVGPECRKLIKR----KVLDVR 422
           +Q L L+ N     + ++  +  L  L  L L            +  +      K  D  
Sbjct: 177 LQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 423 MNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVNLTETFDKKLTAPAPS 482
           +     + +    E+    +   +       +      +  +       F  ++T P   
Sbjct: 233 LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI----FYQPVTIGKAKARFHGRVTQPLKE 288

Query: 483 PRT 485
             T
Sbjct: 289 VYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 61/207 (29%)

Query: 227 LYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ 286
           + E    +  +   FP +          +L+  S +  V        +D +  NN+    
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIKS 57

Query: 287 NLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNST 346
                                              ++               I +L N T
Sbjct: 58  -----------------------------------VQ--------------GIQYLPNVT 68

Query: 347 VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI--VCQLPKLVNLSLSYNYFT 404
              +  N+LT  I      L ++ +L L  N+    + ++  +  L KL +LSL +N  +
Sbjct: 69  KLFLNGNKLTD-IK-PLTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGIS 122

Query: 405 QVGPECRKLIKRKVLDVRMNCILDLPN 431
            +      L + + L +  N I D+  
Sbjct: 123 DING-LVHLPQLESLYLGNNKITDITV 148

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 21/216 (9%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
              LE + I   + N+  + I     S L  L+E+ +           E   N+ NL +L
Sbjct: 53  FGDLEKIEI---SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 255 DLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENI--GSTGAL-YVTFANNEFTG 309
            +        +P       L   +L + +N     +  N   G +     +    N    
Sbjct: 110 LISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGF--LSNSTVFDVGNNRLTGPIPHSFGCL 366
            I +S      L E+    NN     LP ++ F   S   + D+   R+     +    L
Sbjct: 169 -IHNSAFNGTQLDELNLSDNNNLE-ELPNDV-FHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
             ++  +    +    + +    L  L+  SL+Y  
Sbjct: 226 KKLRARSTYNLKKLPTLEK----LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 38/236 (16%), Positives = 67/236 (28%), Gaps = 48/236 (20%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPMEVVNIKNLTFLDLRFNSF 261
             +  T  IP  +   +   EL     KL       F GF        +L  +++  N  
Sbjct: 17  QESKVT-EIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFG-------DLEKIEISQNDV 66

Query: 262 SGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAK 319
              + A++F     L  + +        +                  F   +P+      
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--------------FQN-LPN------ 105

Query: 320 YLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVG-NNRLTGPIPHSF-GCLSSMQYLNLAM 376
             L+ L + N                  + D+  N  +     +SF G       L L  
Sbjct: 106 --LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 377 NQFYGPVPEIVCQLPKLVNLSLS-YNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
           N     +        +L  L+LS  N   ++  +         +LD+    I  LP
Sbjct: 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 45/228 (19%), Positives = 76/228 (33%), Gaps = 36/228 (15%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD 255
           L+ L  L +     NN    I     + L  L  L +S N+L    P ++   K L  L 
Sbjct: 75  LKNLHTLIL----INNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKM--PKTLQELR 127

Query: 256 LRFNSFSGPVPAEIFY--LDLDVLFLNNNKF-SQNLPENI--GSTGALYVTFANNEFTGP 310
           +  N  +  V   +F     + V+ L  N   S  +      G     Y+  A+   T  
Sbjct: 128 VHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185

Query: 311 IPSSIGRAKYLLEVLFLNN---------FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH 361
           IP  +  +   L  L L+             G        L+N     +  N ++     
Sbjct: 186 IPQGLPPS---LTELHLDGNKITKVDAASLKG--------LNNLAKLGLSFNSISAVDNG 234

Query: 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
           S      ++ L+L  N+    VP  +     +  + L  N  + +G  
Sbjct: 235 SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 31/223 (13%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLF----GGFPMEVVNIKNLT 252
              L  L   + + N     +P+     K L EL V  N++       F      +  + 
Sbjct: 96  FAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFN----GLNQMI 148

Query: 253 FLDLRFNSF-SGPVPAEIFY--LDLDVLFLNNNKFS---QNLPENIGSTGALYVTFANNE 306
            ++L  N   S  +    F     L  + + +   +   Q LP ++     L+     N+
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LH--LDGNK 203

Query: 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGC 365
            T  + ++  +    L  L L+      +         +     + NN+L   +P     
Sbjct: 204 ITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD 261

Query: 366 LSSMQYLNLAMNQFYG------PVPEIVCQLPKLVNLSLSYNY 402
              +Q + L  N            P    +      +SL  N 
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)

Query: 210 SNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE 268
            NN    I       LK L+ L + NNK+    P     +  L  L L  N     +P +
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK 118

Query: 269 IFYLDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFT-GPIPSSIGRAKYLLEVL 325
           +    L  L ++ N+ +  + +++      +  V    N      I +   +    L  +
Sbjct: 119 MP-KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 326 FL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP 384
            + +   T  +P   G   + T   +  N++T     S   L+++  L L+ N       
Sbjct: 177 RIADTNITT-IP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 385 EIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
             +   P L  L L+ N   +V          +V+ +  N I  + +
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 249 KNLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENI--GSTGALYVTFAN 304
            +   LDL+ N  +  +    F    +L  L L NNK S  +             +  + 
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 305 NEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLT-GPIP-H 361
           N+    +P  + +    L+ L +  N  T         L+   V ++G N L    I   
Sbjct: 110 NQLKE-LPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLD 420
           +F  +  + Y+ +A       +P+ +   P L  L L  N  T+V     + L     L 
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 421 VRMNCILDLPN 431
           +  N I  + N
Sbjct: 223 LSFNSISAVDN 233

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 33/200 (16%)

Query: 197 LEKLEDLAIFHANSNNFTKS-IPKMT-SKLKFLYELDVSNNKL----FGGFPMEVVNIKN 250
           L ++  +      +N    S I       +K L  + +++  +     G  P       +
Sbjct: 144 LNQMIVV---ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-------S 193

Query: 251 LTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENI--GSTGALYVTFANNE 306
           LT L L  N  +  V A       +L  L L+ N  S  +       +     +   NN+
Sbjct: 194 LTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK 251

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTG------CLPYEIGFLSNSTVFDVGNNRLT-GP 358
               +P  +   KY+ +V++L NN  +       C P      ++ +   + +N +    
Sbjct: 252 LVK-VPGGLADHKYI-QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 359 I-PHSFGCLSSMQYLNLAMN 377
           I P +F C+     + L   
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 4/77 (5%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
           +  P    P                 P  P  P   P P P    P  P   +P      
Sbjct: 91  DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150

Query: 124 ERIQLAFKVIQRFKKRI 140
            R  +A K     KK +
Sbjct: 151 IRALVAQK----LKKEL 163

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 13/58 (22%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           Y   P  +   P P         P         P   P P P    P  P    P   
Sbjct: 90  YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 14/54 (25%), Positives = 15/54 (27%)

Query: 63  PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
            E  P P P         P   P  P  P   P P P    P  P    P   +
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 13/55 (23%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
               PE  P      +   P   P  P  P   P P P    P  P    P    
Sbjct: 95  IEDEPEPTPAAASSADAA-PAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 14/54 (25%)

Query: 76  ICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
           I     P E    P P         P   P  P  P   P+P    A     + 
Sbjct: 88  IYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 35/200 (17%)

Query: 204 AIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSG 263
            +      + T +I +  +++  L  + ++N  +     +E     N+  L +     + 
Sbjct: 25  YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATN 80

Query: 264 PVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYL 321
             P  I  L +L+ L +     + +   N+    +L  +  +++     I + I      
Sbjct: 81  YNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK- 137

Query: 322 LEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG 381
           +  + L+                       N  +T  +P     L  ++ LN+  +  + 
Sbjct: 138 VNSIDLS----------------------YNGAITDIMP--LKTLPELKSLNIQFDGVHD 173

Query: 382 PVPEIVCQLPKLVNLSLSYN 401
                +   PKL  L     
Sbjct: 174 YRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 322 LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY 380
           ++ L + N   T   P  I  LSN     +    +T     +   L+S+  L+++ +   
Sbjct: 68  IKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 381 GPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429
             +   +  LPK+ ++ LSYN         + L + K L+++ + + D 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254
           + +  L +L        + T       S L  L  LD+S++        ++  +  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 255 DLRFNSFSGPVPAEIFYLD----LDVLFLNNNKFS 285
           DL +N        +I  L     L  L +  +   
Sbjct: 142 DLSYNGAIT----DIMPLKTLPELKSLNIQFDGVH 172

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 49/266 (18%), Positives = 96/266 (36%), Gaps = 36/266 (13%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKL----------FGGFPME 244
           L  LE L +     +N  K I   +    ++  + LD++ NK+          F G    
Sbjct: 128 LTSLEMLVL----RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 245 VVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL----- 298
           ++ + ++T  D+             F    +  L L+ N F +++ +      A      
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 299 ---------YVTFANNEFTGPIPSS-IGRAKYLLEVLFLNNFFTGCLPYEI-GFLSNSTV 347
                      +F +  F  P   +  G     ++   L+      L   +    ++   
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 348 FDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ-LPKLVNLSLSYNYFTQV 406
             +  N +     ++F  L+ +  LNL+ N   G +   + + L KL  L LSYN+   +
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRAL 362

Query: 407 GPEC-RKLIKRKVLDVRMNCILDLPN 431
           G +    L   K L +  N +  +P+
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 43/258 (16%), Positives = 78/258 (30%), Gaps = 63/258 (24%)

Query: 229 ELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF-YL-DLDVLFLNNNKFSQ 286
            +D+S N +          +++L FL +   +    +    F  L  L +L L+ N+F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-L 92

Query: 287 NLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNST 346
            L                                          F G        L+N  
Sbjct: 93  QLETGA--------------------------------------FNG--------LANLE 106

Query: 347 VFDVGNNRLTG-PIPH-SFGCLSSMQYLNLAMNQFYGPVPEIV-CQLPKLVNLSLSYNYF 403
           V  +    L G  +    F  L+S++ L L  N      P      + +   L L++N  
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 404 TQVGPEC-RKLIKRKV--LDVRMNCILDLP-NQRSREECGKFFSESKKCPNERSLTLVPC 459
             +  E       +    L +    + D+       E+CG  F    K  +  +L L   
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF----KNTSITTLDL--- 219

Query: 460 ARNRSTVNLTETFDKKLT 477
           + N    ++ + F   + 
Sbjct: 220 SGNGFKESMAKRFFDAIA 237

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 40/242 (16%), Positives = 67/242 (27%), Gaps = 32/242 (13%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFLDLRFNSFSGPVPA 267
           + N+  +      S+L+ L  L V                + +L  L L +N F   +  
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LET 96

Query: 268 EIF--YLDLDVLFLNNNKF-SQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
             F    +L+VL L         L  N     T    +   +N      P+S        
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 323 EVLFL-NNFFTGCLPYEIGF------------LSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
            VL L  N     +  E               LS+ T+ D+    L      +    +S+
Sbjct: 157 HVLDLTFNKVK-SICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429
             L+L+ N F   + +                  T++                     D 
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAG----------TKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 430 PN 431
            N
Sbjct: 265 DN 266

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 46/270 (17%), Positives = 88/270 (32%), Gaps = 38/270 (14%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGF-PMEV-VNIKNL 251
             L  L  L +   + N F   +     + L  L  L ++   L G          + +L
Sbjct: 76  RGLSSLIILKL---DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 252 TFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKFSQNLPENI----GSTGALYVTFANN 305
             L LR N+     PA  F       VL L  NK  +++ E             +  ++ 
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSI 190

Query: 306 EFTGPIPSSIGRAKYL-------LEVLFLNN----------FFTGCLPYEIGFLSNSTVF 348
                    +G  K         +  L L+           FF      +I  L  S  +
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 349 DVG----NNRLTGPIPHSFGCL--SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
           ++G    +     P   +F  L  S ++  +L+ ++ +  +  +      L  L+L+ N 
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 403 FTQVGPEC-RKLIKRKVLDVRMNCILDLPN 431
             ++       L     L++  N +  + +
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 29/204 (14%)

Query: 199 KLEDLAIFHANSNNFTKSIPKMTSKLKF---LYELDVSNNKLFGGF--PMEVVNIKNLTF 253
           K   +     + N F +S+ K          +  L +SN+   G         +  N TF
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 254 ----------LDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENI--GSTGALY 299
                      DL  +     +   +F    DL+ L L  N+    + +N   G T  L 
Sbjct: 270 KGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLK 327

Query: 300 VTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGF--LSNSTVFDVGNNRLT 356
           +  + N     I S +      LEVL L  N     L  +  F  L N     +  N+L 
Sbjct: 328 LNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQS-FLGLPNLKELALDTNQLK 384

Query: 357 GPIPHS-FGCLSSMQYLNLAMNQF 379
             +P   F  L+S+Q + L  N +
Sbjct: 385 S-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ-LPKLVNLSLSYN 401
           ++    D+  N +      SF  L  +Q+L +        +     + L  L+ L L YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 402 YFTQVGPEC-RKLIKRKVLDVRMNCI 426
            F Q+       L   +VL +    +
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNL 115

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 13/77 (16%), Positives = 16/77 (20%), Gaps = 4/77 (5%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
              P      E       P        P P    P P     P          P      
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150

Query: 124 ERIQLAFKVIQRFKKRI 140
             + +A K     KK +
Sbjct: 151 LHVLVAHK----LKKSL 163

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 13/60 (21%), Positives = 14/60 (23%), Gaps = 1/60 (1%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           Y P P+        P  E    P P      P    P P     P          P   S
Sbjct: 90  YTPDPSEL-AAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKAS 148

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 16/93 (17%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPI----------------CPPPPPPPPPPPP 99
            YG    P       P P+P  PP     P                           P  
Sbjct: 9   FYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKK 68

Query: 100 PPPPPPPPPPRPPKPPSPFGPFASERIQLAFKV 132
            PPP P    +P KP         +R++   K+
Sbjct: 69  TPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKI 101

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 16/90 (17%), Positives = 18/90 (20%), Gaps = 22/90 (24%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPP----------------------EPICPPPPPPPPP 96
                 + P P     P   PP PP                                 P 
Sbjct: 8   TFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPK 67

Query: 97  PPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
             PPP P     P+ P       P    R 
Sbjct: 68  KTPPPKPKKTQKPKKPTQKKKSKPGKRMRN 97

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 13/79 (16%), Positives = 15/79 (18%), Gaps = 18/79 (22%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPP------------------PPPPPP 98
           + P          P P +   P P PP P      P                        
Sbjct: 3   FIPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA 62

Query: 99  PPPPPPPPPPPRPPKPPSP 117
              P   PPP         
Sbjct: 63  QKKPKKTPPPKPKKTQKPK 81

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 13/71 (18%), Positives = 16/71 (22%), Gaps = 17/71 (23%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPP-----------------PPPPPP 106
           ++ P          P P       P PP PP     P                       
Sbjct: 2   DFIPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKR 61

Query: 107 PPPRPPKPPSP 117
              +P K P P
Sbjct: 62  AQKKPKKTPPP 72

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 16/58 (27%), Positives = 22/58 (37%)

Query: 82  PPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKR 139
           P +        P P     P P PP PPR  + PS      +    LA +  Q+ K+ 
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRA 62

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 11/66 (16%), Positives = 15/66 (22%), Gaps = 17/66 (25%)

Query: 72  PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPP-----------------PPPPRPPKP 114
           P +        P P+    P P PP PP     P                     +  + 
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 115 PSPFGP 120
                P
Sbjct: 65  KPKKTP 70

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 8/59 (13%), Positives = 11/59 (18%), Gaps = 2/59 (3%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
                           +      PPP+P       P  P       P        K  +
Sbjct: 47  ALGALALQPKQKQKRAQKKPKKTPPPKP--KKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 20/211 (9%)

Query: 210 SNNFTKSIPKMT-SKLKFLYELDVSNNKL----FGGFPMEVVNIKNLTFLDLRFNSFSGP 264
             N  + I   T   L  L  L +  N +     G F      + +L  L+L  N  +  
Sbjct: 83  MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF----NGLASLNTLELFDNWLTV- 137

Query: 265 VPAEIFY--LDLDVLFLNNNKFSQ---NLPENIGSTGALYVTFANNEFTGPIPSSIGRAK 319
           +P+  F     L  L+L NN            + S   L +     +    I        
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEY-ISEGAFEGL 195

Query: 320 YLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ 378
           + L+ L L        +P  +  L      ++  N      P SF  LSS++ L +  +Q
Sbjct: 196 FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 379 FYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
                      L  LV L+L++N  + +  +
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 12/189 (6%)

Query: 250 NLTFLDLRFNSFSGPVPAEIF--YLDLDVLFLNNNKFSQNLPENI--GSTGALYVTFANN 305
           N  +L+L  N+    + A+ F     L+VL L  N     +      G      +   +N
Sbjct: 76  NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 306 EFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVG-NNRLTGPIPHSF 363
             T  IPS        L  L+L NN       Y    + +    D+G   +L      +F
Sbjct: 134 WLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVR 422
             L +++YLNL M      +P +   L  L  L +S N+F ++ P     L   K L V 
Sbjct: 193 EGLFNLKYLNLGMCNIKD-MPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 423 MNCILDLPN 431
            + +  +  
Sbjct: 251 NSQVSLIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 41/203 (20%), Positives = 65/203 (32%), Gaps = 42/203 (20%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL-------FGGFPMEVVNI 248
           L  L  L +     +N+   IP      L  L EL + NN +       F   P      
Sbjct: 122 LASLNTLEL----FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP------ 171

Query: 249 KNLTFLDL-RFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANN 305
            +L  LDL         +    F    +L  L L       ++P      G   +  + N
Sbjct: 172 -SLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGN 228

Query: 306 EFTGPIPSSIGRAKYLLEVLFLNN---------FFTGCLPYEIGFLSNSTVFDVGNNRLT 356
            F    P S      L + L++ N          F G        L++    ++ +N L+
Sbjct: 229 HFPEIRPGSFHGLSSL-KKLWVMNSQVSLIERNAFDG--------LASLVELNLAHNNLS 279

Query: 357 GPIPHSFGCLSSMQYLNLAMNQF 379
                 F  L  +  L+L  N +
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
           G  SN+   ++  N +      +F  L  ++ L L  N            L  L  L L 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 400 YNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
            N+ T +       L K + L +R N I  +P
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 18/158 (11%), Positives = 27/158 (17%), Gaps = 59/158 (37%)

Query: 34  VAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP 93
           V  G V       +  I +   GY                E         +     P  P
Sbjct: 61  VPEGTVATV---GQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAP 117

Query: 94  PP---------------------------------------------------PPPPPPP 102
                                                                  P P  
Sbjct: 118 AAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAA 177

Query: 103 PPPPPPPRPPKPPSPFGPFASERIQLAFKVIQRFKKRI 140
                 P   KP +  G F   R +++       ++ I
Sbjct: 178 AEEKAAPAAAKPATTEGEFPETREKMS-----GIRRAI 210

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 15/62 (24%), Positives = 20/62 (32%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P+             + PP   P+P  PPPP P    PP          R  + P+  
Sbjct: 22  VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP 81

Query: 119 GP 120
           G 
Sbjct: 82  GT 83

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 18/90 (20%), Positives = 20/90 (22%), Gaps = 16/90 (17%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPP----------------PPPPPPPPPPPP 102
           P   P+  PPPPP P    PP                                 P P  P
Sbjct: 42  PVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAP 101

Query: 103 PPPPPPPRPPKPPSPFGPFASERIQLAFKV 132
              PP      P     P          +V
Sbjct: 102 ASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 17/69 (24%), Gaps = 1/69 (1%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPP-PPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           G             P     + P                PP   P P PPPPP P    P
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 115 PSPFGPFAS 123
           P      + 
Sbjct: 62  PDTVTGDSV 70

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 16/66 (24%), Positives = 17/66 (25%), Gaps = 5/66 (7%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP-PPPRPPKP---- 114
              P       P              + PP   P P PPPPP P    PP          
Sbjct: 13  GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72

Query: 115 PSPFGP 120
               GP
Sbjct: 73  RILRGP 78

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 14/68 (20%), Positives = 18/68 (26%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             A +       PP   P   PPPPP P    PP               P        +P
Sbjct: 29  TSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAP 88

Query: 118 FGPFASER 125
              +  + 
Sbjct: 89  AVRYGRQP 96

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 15/67 (22%), Positives = 17/67 (25%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                  P                        PP   P P PPPPP P     P +  G 
Sbjct: 9   HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68

Query: 121 FASERIQ 127
              +RI 
Sbjct: 69  SVLQRIL 75

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 14/74 (18%), Gaps = 3/74 (4%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPP---PPPPPPR 110
             G  P               P  P      P       P P  P   PP      P   
Sbjct: 57  AAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLY 116

Query: 111 PPKPPSPFGPFASE 124
               P P      E
Sbjct: 117 HHPVPEPDPVRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 11/57 (19%), Positives = 11/57 (19%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
           P      P       P P  P   PP      P     P P   P            
Sbjct: 81  PGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIKR 137

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 4/46 (8%), Positives = 5/46 (10%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
                      P       P                P    P  + 
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP 50

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 10/67 (14%), Positives = 10/67 (14%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           G    P   P    PP  P            P     P         P            
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 114 PPSPFGP 120
             S    
Sbjct: 77  TTSMNDM 83

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.5 bits (138), Expect = 6e-09
 Identities = 10/68 (14%), Positives = 12/68 (17%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            G  YG    P     P    +    P                        P   P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 113 KPPSPFGP 120
           +P  P   
Sbjct: 98  QPQVPVQM 105

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 8/70 (11%), Positives = 11/70 (15%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                 PA A         PP+   P     + + P                        
Sbjct: 29  FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88

Query: 113 KPPSPFGPFA 122
               P     
Sbjct: 89  PLVDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 7/68 (10%), Positives = 10/68 (14%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G          ++ PP  P    +        P    P         P            
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 113 KPPSPFGP 120
                   
Sbjct: 77  TTSMNDMH 84

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 10/68 (14%), Positives = 13/68 (19%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
            YG    P   P    PP+           +  PP    P         P       +  
Sbjct: 15  QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID 74

Query: 116 SPFGPFAS 123
                   
Sbjct: 75  QATTSMND 82

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 6/68 (8%), Positives = 7/68 (10%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                   PA            P    P   +     P                      
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86

Query: 113 KPPSPFGP 120
             P     
Sbjct: 87  NVPLVDPN 94

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 7/69 (10%), Positives = 8/69 (11%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
              G +      PP    P         P                        P   P  
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

Query: 115 PSPFGPFAS 123
                    
Sbjct: 96  YMQPQVPVQ 104

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 5/71 (7%), Positives = 7/71 (9%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                    A          P     P    +    P                       
Sbjct: 28  QFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN 87

Query: 113 KPPSPFGPFAS 123
            P      +  
Sbjct: 88  VPLVDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 10/68 (14%), Positives = 10/68 (14%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
            Y  A         P        PP  P            PP    P         P   
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 116 SPFGPFAS 123
                   
Sbjct: 68  QLHQQIDQ 75

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 10/71 (14%), Positives = 17/71 (23%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G   +      +           +        P+  P     P  P     P     +P 
Sbjct: 57  GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

Query: 113 KPPSPFGPFAS 123
             P+   P A+
Sbjct: 117 AAPAYGQPSAA 127

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 10/68 (14%), Positives = 14/68 (20%), Gaps = 2/68 (2%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G    G  P+        P  E +                     P   P     P  P 
Sbjct: 46  GMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT--SMNDMHLHNVPLVDPNAYMQPQVPV 103

Query: 113 KPPSPFGP 120
           +  +P   
Sbjct: 104 QMGTPLQQ 111

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 6/71 (8%), Positives = 6/71 (8%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                 P               P     P         P                     
Sbjct: 26  PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85

Query: 113 KPPSPFGPFAS 123
                  P A 
Sbjct: 86  HNVPLVDPNAY 96

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 6/71 (8%), Positives = 8/71 (11%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                     P+           +  PP    P         P                 
Sbjct: 22  PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81

Query: 113 KPPSPFGPFAS 123
                  P   
Sbjct: 82  DMHLHNVPLVD 92

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 8/70 (11%), Positives = 10/70 (14%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
             G  G  P                      +                P   P    +P 
Sbjct: 41  SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

Query: 113 KPPSPFGPFA 122
            P     P  
Sbjct: 101 VPVQMGTPLQ 110

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 10/84 (11%), Positives = 14/84 (16%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
             G        ++  P                        P   P     P  P     P
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

Query: 113 KPPSPFGPFASERIQLAFKVIQRF 136
                    A    Q +  + Q  
Sbjct: 109 LQQQQQPMAAPAYGQPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 6/71 (8%), Positives = 9/71 (12%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G         P+   P     + + P                        P   P     
Sbjct: 39  GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

Query: 113 KPPSPFGPFAS 123
                      
Sbjct: 99  PQVPVQMGTPL 109

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 5/68 (7%), Positives = 8/68 (11%), Gaps = 1/68 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                      +   PP      +                                P   
Sbjct: 33  QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVP-LV 91

Query: 113 KPPSPFGP 120
            P +   P
Sbjct: 92  DPNAYMQP 99

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 8/66 (12%), Positives = 14/66 (21%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                 +   P   P + + P  P    +       PP    P            +    
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 118 FGPFAS 123
               A+
Sbjct: 72  QIDQAT 77

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 10/61 (16%), Positives = 13/61 (21%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQL 128
           P    +      P  +P    PP  P            PP                + QL
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 129 A 129
            
Sbjct: 70  H 70

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 9/54 (16%), Positives = 12/54 (22%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                 P+          P+  P    PP  P            PP+   P   
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG 57

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 8/67 (11%), Positives = 11/67 (16%)

Query: 52  IGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           I            +  P   P   + P  P            P   P    P        
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132

Query: 112 PKPPSPF 118
                 +
Sbjct: 133 RPMNQLY 139

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 9/83 (10%), Positives = 14/83 (16%), Gaps = 5/83 (6%)

Query: 52  IGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           +G   +    +    P     P+      P            P    P P          
Sbjct: 1   MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 112 PKPPSP-----FGPFASERIQLA 129
                          +    QL 
Sbjct: 61  YGSAGTSVTLQLDDGSGRTYQLR 83

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 50/240 (20%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L     +A      +N T ++ +  + L  +  L      +     ++   + NL  L+L
Sbjct: 18  LANAIKIAA---GKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFS-----QNLPENIGSTGALYVTFANNEFTGPI 311
           + N  +   P +     +  L L+ N          L                       
Sbjct: 71  KDNQITDLAPLKNLT-KITELELSGNPLKNVSAIAGLQS--------------------- 108

Query: 312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
                     ++ L L +     +   +  LSN  V  +  N++T  I      L+++QY
Sbjct: 109 ----------IKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITN-IS-PLAGLTNLQY 155

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
           L++   Q    +  +   L KL  L    N  + +      L     + ++ N I D+  
Sbjct: 156 LSIGNAQVSD-LTPLA-NLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 33/227 (14%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L+ +  L+           +I  +   L  L  L++ +N++    P++  N+  +T L+L
Sbjct: 40  LDGITTLSA----FGTGVTTIEGV-QYLNNLIGLELKDNQITDLAPLK--NLTKITELEL 92

Query: 257 RFNSFSGPVPAEIFYLD----LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311
             N         +  +     +  L L + + +      +     L  +    N+ T   
Sbjct: 93  SGNPLK-----NVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT--- 142

Query: 312 PSSIGRAKYL--LEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS 368
             +I     L  L+ L + N   +   P  +  LS  T     +N+++  I      L +
Sbjct: 143 --NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-IS-PLASLPN 196

Query: 369 MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIK 415
           +  ++L  NQ        +     L  ++L+    T         + 
Sbjct: 197 LIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 52/215 (24%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L K+ +L +    S N  K++  + + L+ +  LD+++ ++    P+    + NL  L L
Sbjct: 84  LTKITELEL----SGNPLKNVSAI-AGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYL 136

Query: 257 RFNSFSGPVPAEIFYLD-LDVLFLNNNKFS-----QNLPENIGSTGALYVTFANNEFTGP 310
             N  +   P  +  L  L  L + N + S      NL +                    
Sbjct: 137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSK-------------------- 174

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
                      L  L  ++     +   +  L N     + NN+++   P      S++ 
Sbjct: 175 -----------LTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLF 220

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ 405
            + L                  LV  ++       
Sbjct: 221 IVTLTNQTITNQPVFY---NNNLVVPNVVKGPSGA 252

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 55.7 bits (132), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 15/61 (24%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           Y           P    E   PP  P  P  P      P  P P  P     P PP    
Sbjct: 432 YSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLE 491

Query: 117 P 117
            
Sbjct: 492 H 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 53.0 bits (125), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 22/93 (23%), Gaps = 3/93 (3%)

Query: 31  HYEVAAGDVVAETRRQELEIIIGGGGYGPAPAPE--YCPPPPPPPEPICPPPPPPEPICP 88
           +  V  G   A       ++ +  G           +            P     +P  P
Sbjct: 395 NNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPP 454

Query: 89  PPPPPPPPPPPPPPPPPPP-PPRPPKPPSPFGP 120
             P  P  P      P  P P  P     P  P
Sbjct: 455 VKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 50.3 bits (118), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 19/89 (21%), Gaps = 2/89 (2%)

Query: 34  VAAGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPP 93
             +G     T        +      P    +       P               P     
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE 449

Query: 94  PPPPPPPPPPP--PPPPPRPPKPPSPFGP 120
            P PP  P  P  P      P  P+P  P
Sbjct: 450 KPTPPVKPTAPTKPTYETEKPLKPAPVAP 478

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 49.5 bits (116), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPP-PPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
                   P      P  P+ P  P  P      P  P P  P    +P  P   
Sbjct: 436 GKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.7 bits (114), Expect = 3e-06
 Identities = 12/81 (14%), Positives = 17/81 (20%)

Query: 37  GDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPP 96
           G    +       + +G             P  P         P     +         P
Sbjct: 385 GAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVP 444

Query: 97  PPPPPPPPPPPPPRPPKPPSP 117
                 P PP  P  P  P+ 
Sbjct: 445 KVTKEKPTPPVKPTAPTKPTY 465

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 15/59 (25%), Gaps = 2/59 (3%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPP--PPPPPPPPPPPPRPPKP 114
           G   A          P P   P  P +P      P  P P  P     P PP       
Sbjct: 436 GKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 38/231 (16%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
            +   +    +    + T ++ +  ++L  + ++  +N+ +     ++   + N+T L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 257 RFNSFSGPVPAEIFYLD----LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311
             N  +     +I  L     L  LFL+ NK       ++     L  ++  +N  +   
Sbjct: 76  NGNKLT-----DIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS--- 125

Query: 312 PSSIGRAKYL--LEVLFLNNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSFGCL 366
              I    +L  LE L+L N        +I  LS  T      + +N+++  I      L
Sbjct: 126 --DINGLVHLPQLESLYLGN----NKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGL 177

Query: 367 SSMQYLNLAMNQFYGPVPEI--VCQLPKLVNLSLSYNYFTQVGPECRKLIK 415
           + +Q L L+ N     + ++  +  L  L  L L            +  + 
Sbjct: 178 TKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 34/219 (15%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
             +L  +    AN+++   S+  +   L  + +L ++ NKL    P+   N+KNL +L L
Sbjct: 42  QNELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFL 97

Query: 257 RFNSFSGPVPAEIFYLD----LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI 311
             N        ++  L     L  L L +N  S ++   +     L  +   NN+ T   
Sbjct: 98  DENKVK-----DLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--- 147

Query: 312 PSSIGRAKYL--LEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSFGC 365
              I     L  L+ L L +N  +     +I  L+  T      +  N ++         
Sbjct: 148 --DITVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRA--LAG 198

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT 404
           L ++  L L   +           L     +  +     
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 37/219 (16%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254
            +L  +  L +    + N    I  + + LK L  L +  NK+     ++  ++K L  L
Sbjct: 65  QYLPNVTKLFL----NGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLK--DLKKLKSL 117

Query: 255 DLRFNSFSGPVPAEIFYLD----LDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
            L  N  S     +I  L     L+ L+L NNK +      +     L  ++  +N+ + 
Sbjct: 118 SLEHNGIS-----DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS- 169

Query: 310 PIPSSIGRAKYL--LEVLFL-NNFFTGCLPYEIGFLSNST---VFDVGNNRLTGPIPHSF 363
                I     L  L+ L+L  N  +     ++  L+      V ++ +        +  
Sbjct: 170 ----DIVPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY 402
             L     +           PEI+         ++ ++ 
Sbjct: 221 SNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHL 257

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 20/63 (31%), Positives = 22/63 (34%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                         PP+   PPP    P   PP   PP   PP   PPPP   PP+   P
Sbjct: 375 MAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPP 434

Query: 118 FGP 120
             P
Sbjct: 435 AAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 58  GPAPAPEYCPPPP-PPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
              P   Y PPP   PP+   P   PP+   P   PPPP   PP   PP  PP+
Sbjct: 386 AAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQ 439

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 17/59 (28%), Positives = 18/59 (30%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
            A                   PP+   PPP   PP   PP   PP   P    PP P G
Sbjct: 368 AAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQG 426

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 20/63 (31%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                         PP    P P   PP    P   PP   PP   PPPP   PP   PP
Sbjct: 375 MAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPP 434

Query: 113 KPP 115
             P
Sbjct: 435 AAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 17/64 (26%), Positives = 19/64 (29%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
                         P    P P   PP   PP   PP   PP   P PP+   P G   +
Sbjct: 376 AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPA 435

Query: 124 ERIQ 127
              Q
Sbjct: 436 APPQ 439

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK--PPSPFGP 120
                            +    PP    PPP   PP   PP   PP+  PP  + P
Sbjct: 367 DAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPP 422

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 44/216 (20%), Positives = 68/216 (31%), Gaps = 52/216 (24%)

Query: 210 SNNFTKSIPKMT-SKLKFLYELDVSNNKL----FGGFPMEVVNIKNLTFLDLRFNSFSGP 264
             N    +P  +    + L  L + +N L       F      +  L  LDL  N+    
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF----TGLALLEQLDLSDNAQLRS 95

Query: 265 VPAEIF-YLD-LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
           V    F  L  L  L L+     Q L   +              F G + +        L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGL-QELGPGL--------------FRG-LAA--------L 131

Query: 323 EVLFLNN---------FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373
           + L+L +          F          L N T   +  NR++     +F  L S+  L 
Sbjct: 132 QYLYLQDNALQALPDDTFRD--------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
           L  N+     P     L +L+ L L  N  + +  E
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 45/210 (21%), Positives = 68/210 (32%), Gaps = 34/210 (16%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
              L  L     +SN     I     + L  L +LD+S+N             +  L  L
Sbjct: 55  CRNLTIL---WLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 255 DLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP 312
            L        +   +F     L  L+L +N   Q LP++         TF +      + 
Sbjct: 111 HLDRCGLQE-LGPGLFRGLAALQYLYLQDNAL-QALPDD---------TFRD------LG 153

Query: 313 SSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY 371
           +        L  LFL  N  +         L +     +  NR+    PH+F  L  +  
Sbjct: 154 N--------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
           L L  N       E +  L  L  L L+ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 47/224 (20%), Positives = 73/224 (32%), Gaps = 66/224 (29%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL-------FGGFPMEVVNI 248
           L  LE L     + N   +S+   T   L  L+ L +    L       F G        
Sbjct: 79  LALLEQL---DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ 129

Query: 249 KNLTFLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNE 306
             L +L L+ N+    +P + F    +L  LFL+ N+   ++PE           F    
Sbjct: 130 -ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRI-SSVPER---------AFRG-- 175

Query: 307 FTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGF--LSNSTVFDVGNNRLTGPIPHSF 363
               + S        L+ L L  N     +     F  L       +  N L+     + 
Sbjct: 176 ----LHS--------LDRLLLHQNRVA-HVHPHA-FRDLGRLMTLYLFANNLSALPTEAL 221

Query: 364 GCLSSMQYLNLA----------------MNQFYGPVPEIVCQLP 391
             L ++QYL L                 + +F G   E+ C LP
Sbjct: 222 APLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 10/172 (5%)

Query: 265 VPAEIFYLDLDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
           VP  I       +FL+ N+ S ++P            +   +N     I ++      LL
Sbjct: 26  VPVGIPA-ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALL 82

Query: 323 EVLFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY 380
           E L L +N     +       L       +    L    P  F  L+++QYL L  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL- 141

Query: 381 GPVPEIVCQ-LPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
             +P+   + L  L +L L  N  + V     R L     L +  N +  + 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 52.5 bits (125), Expect = 9e-08
 Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 22/99 (22%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPP----------------------PPEPICPPPPPP 93
              PAP   + P       P+                           P  P   PPP  
Sbjct: 12  RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQ 71

Query: 94  PPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLAFKV 132
               P  PP P  P P+  K   P      +R ++A K+
Sbjct: 72  KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 15/78 (19%), Positives = 17/78 (21%), Gaps = 16/78 (20%)

Query: 56  GYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPP----------------PPPPPPP 99
           G+         P P     P       P P                          P  P
Sbjct: 4   GFFNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNP 63

Query: 100 PPPPPPPPPPRPPKPPSP 117
            P PPP    + PK P  
Sbjct: 64  RPRPPPRQKKQAPKQPPK 81

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 12/55 (21%), Positives = 12/55 (21%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPF 121
            P P PP       P   P    P P       P    P    R          F
Sbjct: 62  NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLF 116

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 13/62 (20%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                   P PPP  +   P  PP      P       P    P          +    F
Sbjct: 57  ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLF 116

Query: 119 GP 120
             
Sbjct: 117 DV 118

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 47/218 (21%)

Query: 229 ELDVSNNKL-------FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY--LDLDVLFL 279
            LD+S N L       F  FP        L  LDL        +    +     L  L L
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFP-------ELQVLDLSRCEIQT-IEDGAYQSLSHLSTLIL 83

Query: 280 NNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYE 338
             N   Q+L                  F+G            L+ L            + 
Sbjct: 84  TGNPI-QSLALGA--------------FSGLS---------SLQKLVAVETNLASLENFP 119

Query: 339 IGFLSNSTVFDVGNNRLTG-PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL---- 393
           IG L      +V +N +    +P  F  L+++++L+L+ N+        +  L ++    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
           ++L LS N    + P   K I+ K L +  N +  +P+
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.8 bits (128), Expect = 9e-08
 Identities = 4/62 (6%), Positives = 8/62 (12%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
              + E         +           +              P           +  S  
Sbjct: 35  ELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAA 94

Query: 119 GP 120
            P
Sbjct: 95  KP 96

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 5/66 (7%), Positives = 8/66 (12%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
              +                     E +        P                 KP    
Sbjct: 41  SEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKA 100

Query: 119 GPFASE 124
               +E
Sbjct: 101 SEVVAE 106

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 52.3 bits (124), Expect = 3e-07
 Identities = 7/82 (8%), Positives = 11/82 (13%)

Query: 36  AGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPP 95
           A          +LE +   G     P            E         +           
Sbjct: 2   AHHHHHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENK 61

Query: 96  PPPPPPPPPPPPPPRPPKPPSP 117
                          P    + 
Sbjct: 62  LEKAEGVATASETASPASNEAA 83

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 4/66 (6%), Positives = 8/66 (12%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  +           E                                  P   +  +  
Sbjct: 27  PENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTE 86

Query: 119 GPFASE 124
              A+ 
Sbjct: 87  TAEAAS 92

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 49.6 bits (117), Expect = 2e-06
 Identities = 7/66 (10%), Positives = 9/66 (13%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            A   +               P   E              P           P     P 
Sbjct: 56  HARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPK 115

Query: 119 GPFASE 124
               +E
Sbjct: 116 SDKETE 121

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 48.4 bits (114), Expect = 5e-06
 Identities = 3/59 (5%), Positives = 5/59 (8%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
              P                                                 P ++E 
Sbjct: 24  TAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 48.0 bits (113), Expect = 6e-06
 Identities = 8/59 (13%), Positives = 9/59 (15%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PA                 P     E +   P     P         P          P
Sbjct: 77  PASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 5/58 (8%), Positives = 6/58 (10%), Gaps = 5/58 (8%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
                 PE                                         +     ASE
Sbjct: 21  GEETAVPENSGANTELVSG-----ESEHSTNEADKQNEGEHARENKLEKAEGVATASE 73

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 45/213 (21%), Positives = 67/213 (31%), Gaps = 62/213 (29%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPMEVVNIKNLTFLDLRFNSF 261
            SN  +    K   +L  L  L +++NKL       F           NL  L +  N  
Sbjct: 45  QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-------NLETLWVTDNKL 97

Query: 262 SGPVPAEIF-YL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAK 319
              +P  +F  L +L  L L+ N+  ++LP  +              F            
Sbjct: 98  QA-LPIGVFDQLVNLAELRLDRNQL-KSLPPRV--------------FDS---------- 131

Query: 320 YL--LEVLFLNN---------FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS 368
            L  L  L L            F          L++     + NN+L      +F  L+ 
Sbjct: 132 -LTKLTYLSLGYNELQSLPKGVFDK--------LTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 369 MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
           ++ L L  NQ           L KL  L L  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 13/173 (7%)

Query: 265 VPAEIFYLDLDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYLL 322
           +P+ I   D   L L +NK S  LP       T    +   +N+    +P+ I +    L
Sbjct: 31  IPSNIP-ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNL 87

Query: 323 EVLFL-NNFFTGCLPYEI-GFLSNSTVFDVGNNRLTGPIPHS-FGCLSSMQYLNLAMNQF 379
           E L++ +N     LP  +   L N     +  N+L   +P   F  L+ + YL+L  N+ 
Sbjct: 88  ETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL 145

Query: 380 YGPVPEIVC-QLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
              +P+ V  +L  L  L L  N   +V      KL + K L +  N +  +P
Sbjct: 146 QS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 20/221 (9%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLT 252
             L  LE L +    S N+  ++       L  L  L++  N         +  ++  L 
Sbjct: 97  SSLGSLEHLDL----SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 253 FLDLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG 309
            L +        +  + F     L+ L ++ +      P+++ S   + ++     +   
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 310 PIPSSIGRAKYLLEVLFL-NNFFTGCLPYEI--------GFLSNSTVFDVGNNRLTGPIP 360
            +          +E L L +         E+                  + +  L   + 
Sbjct: 213 -LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 361 HSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
                +S +  L  + NQ       I  +L  L  + L  N
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 37/204 (18%)

Query: 210 SNNFTKSIPKMT-SKLKFLYELDVSNNKLF----GGFPMEVVNIKNLTFLDLRFNSFSGP 264
           SNN    I      +   L  L +++N +       F     ++ +L  LDL +N  S  
Sbjct: 60  SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF----SSLGSLEHLDLSYNYLSN- 114

Query: 265 VPAEIF-YLD-LDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKY 320
           + +  F  L  L  L L  N +      ++    T    +   N +    I         
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----- 169

Query: 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY 380
                     F G        L+     ++  + L    P S   + ++ +L L M Q  
Sbjct: 170 ----------FAG--------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 381 GPVPEIVCQLPKLVNLSLSYNYFT 404
             +   V     +  L L      
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 22/228 (9%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTFL 254
              L+ L      SN    +I + + S L  L  LD+S N L           + +LTFL
Sbjct: 75  CVNLQAL---VLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFL 129

Query: 255 DLRFNSFSGPVPAEIFY--LDLDVLFLNNNKFSQNLPENI-GSTGAL-YVTFANNEFTGP 310
           +L  N +       +F     L +L + N      +          L  +    ++    
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS- 188

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP--------IPH 361
                 ++   +  L L        L   +   S+    ++ +  L             +
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE 409
           S     + + + +     +  V +++ Q+  L+ L  S N    V   
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 209 NSNNFTKSIPK-MTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPA 267
           +S +   SIP  +T  +K    LD+SNN++      ++    NL  L L  N  +  +  
Sbjct: 39  SSGSLN-SIPSGLTEAVK---SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEE 93

Query: 268 EIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVL 325
           + F     L+ L L+ N    NL  +          F        + S        L  L
Sbjct: 94  DSFSSLGSLEHLDLSYNYL-SNLSSS---------WFKP------LSS--------LTFL 129

Query: 326 FL-NNFFTGCLPYEIGF--LSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYLNLAMNQFYG 381
            L  N +   L     F  L+   +  VGN      I    F  L+ ++ L +  +    
Sbjct: 130 NLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 382 PVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNCILDLP 430
             P+ +  +  + +L L       +           + L++R   +    
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 10/68 (14%), Positives = 12/68 (17%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
              G    P          PP+       P       P       P       P      
Sbjct: 12  WNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 71

Query: 113 KPPSPFGP 120
           +P    G 
Sbjct: 72  QPHGGGGW 79

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 10/70 (14%), Positives = 12/70 (17%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           GG  Y    +P     PP        P               P       P      +P 
Sbjct: 15  GGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 74

Query: 113 KPPSPFGPFA 122
                     
Sbjct: 75  GGGGWGQGGT 84

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 11/70 (15%), Positives = 14/70 (20%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            GGG    P       P              +P       P                +P 
Sbjct: 33  QGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPS 92

Query: 113 KPPSPFGPFA 122
           KP +     A
Sbjct: 93  KPKTNMKHVA 102

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 9/73 (12%), Positives = 11/73 (15%), Gaps = 5/73 (6%)

Query: 53  GGGGYGPAPAPEYCPPPPP-----PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPP 107
           G    G         PP        P       P       P       P       P  
Sbjct: 16  GSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 75

Query: 108 PPRPPKPPSPFGP 120
                +  +    
Sbjct: 76  GGGWGQGGTHGQW 88

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 11/72 (15%), Positives = 14/72 (19%), Gaps = 2/72 (2%)

Query: 54  GGGYGPAPAPEYCPPPPPPPEPICP--PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           G    P P   +       P    P     PP+       P       P       P   
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 60

Query: 112 PKPPSPFGPFAS 123
                  G +  
Sbjct: 61  GWGQPHGGGWGQ 72

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 8/68 (11%), Positives = 9/68 (13%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
             GG    P        P       P               P       P       +  
Sbjct: 24  SPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGG 83

Query: 113 KPPSPFGP 120
                  P
Sbjct: 84  THGQWNKP 91

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 11/69 (15%), Positives = 14/69 (20%), Gaps = 1/69 (1%)

Query: 53  GGGGYGPAPAPEYCPPPPP-PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           GG  Y P     +  P      +P       P       P       P            
Sbjct: 26  GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTH 85

Query: 112 PKPPSPFGP 120
            +   P  P
Sbjct: 86  GQWNKPSKP 94

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 11/73 (15%), Positives = 15/73 (20%), Gaps = 2/73 (2%)

Query: 53  GGGGYGPAPAPEYCPPPPP--PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
           GGGG+G      +  P               P       P                 P +
Sbjct: 34  GGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSK 93

Query: 111 PPKPPSPFGPFAS 123
           P          A+
Sbjct: 94  PKTNMKHVAGAAA 106

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 8/68 (11%), Positives = 11/68 (16%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            GGG+G      +  P               +         P  P               
Sbjct: 50  HGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGA 109

Query: 113 KPPSPFGP 120
                 G 
Sbjct: 110 VVGGLGGY 117

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 64/229 (27%)

Query: 222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD----LDVL 277
             L    + ++    +      +   +  +   +   ++        +  +     L  L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-----SLAGMQFFTNLKEL 68

Query: 278 FLNNNKFS-----QNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFF 331
            L++N+ S     ++L +                               LE L +  N  
Sbjct: 69  HLSHNQISDLSPLKDLTK-------------------------------LEELSVNRNRL 97

Query: 332 TGCLPYEIGFLSNS--TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC- 388
                  +  + ++  +   + NN L          L +++ L++  N+    +  IV  
Sbjct: 98  K-----NLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNK----LKSIVML 146

Query: 389 -QLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQRSRE 436
             L KL  L L  N  T  G    +L K   +D+     ++ P +   E
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPE 194

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 14/60 (23%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                G         PP        P         P   P     P P  P  PPPP P 
Sbjct: 161 KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPA 220

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 15/83 (18%), Positives = 17/83 (20%)

Query: 39  VVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPP 98
           VV    +Q L                       PP        P         P   P  
Sbjct: 143 VVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGG 202

Query: 99  PPPPPPPPPPPRPPKPPSPFGPF 121
              P P  P   PP  P+     
Sbjct: 203 DRFPGPAGPGGPPPPFPAGQTHH 225

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 14/60 (23%), Gaps = 2/60 (3%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
            G    P  +     P         P   P       P P  P  PPPP P         
Sbjct: 171 EGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGD--RFPGPAGPGGPPPPFPAGQTHHHHH 228

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 193 LSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252
           L+D  E+LE L+      N    SI  +  KL  L +L++S+N++ GG  +      NLT
Sbjct: 37  LTDEFEELEFLST----INVGLTSIANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91

Query: 253 FLDLRFNSFSGPVPAEIFYL----DLDVLFLNNN 282
            L+L  N       + I  L    +L  L L N 
Sbjct: 92  HLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 193 LSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT 252
           L+     LE L++     N    S+  +  KL  L +L++S N++FGG  M    + NLT
Sbjct: 44  LTAEFVNLEFLSL----INVGLISVSNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98

Query: 253 FLDLRFNSFSGPVPAEIFYL----DLDVLFLNNN 282
            L+L  N       + +  L     L  L L N 
Sbjct: 99  HLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFL 254
              + +L +   N  +    I  +T++   L  L + N  L      P     +  L  L
Sbjct: 23  PAAVRELVL--DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKL 76

Query: 255 DLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFS 285
           +L  N   G +      L  L  L L+ NK  
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           PP P   P   P     P+  P  P  P   P  PP        P+ P+   P
Sbjct: 5   PPAPDDYPT-FPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 15/46 (32%), Positives = 16/46 (34%)

Query: 75  PICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P  PP P   P  P     P   P  P  P   P RPP+  S    
Sbjct: 2   PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAA 47

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 14/47 (29%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
           P  PP P   P  P     P   P  P  P   P  PP        P
Sbjct: 2   PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAP 48

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 61  PAPEYCP-PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
           PAP+  P  P     P+  P  P  P     P  PP        P  P  R P 
Sbjct: 6   PAPDDYPTFPDTSTWPVVFPELPAAP--YGGPCRPPQHTSKAAAPRIPADRLPN 57

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 9/81 (11%), Positives = 17/81 (20%), Gaps = 1/81 (1%)

Query: 36  AGDVVAETRRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPP 95
           A ++ A+      E++    G  P P       P      +       +           
Sbjct: 316 AEEMSAQLTGVLREVVAQDTG-VPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEK 374

Query: 96  PPPPPPPPPPPPPPRPPKPPS 116
                       P   P   +
Sbjct: 375 LTANEIVTALSVPLVDPTDVA 395

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 5/60 (8%), Positives = 6/60 (10%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
              A +   P P       P                                      P 
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPL 388

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 4/57 (7%), Positives = 5/57 (8%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
               P P       P                                  +   P   
Sbjct: 334 DTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVD 390

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 11/186 (5%)

Query: 250 NLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENI--GSTGALYVTFANNEF 307
           +   ++    + +  +P ++   D  +L L+ N              T    +     E 
Sbjct: 11  SHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL 67

Query: 308 TGPIPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL 366
           T  +          L  L L +N     LP     L   TV DV  NRLT     +   L
Sbjct: 68  TK-LQVDGTLPV--LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRMNC 425
             +Q L L  N+     P ++   PKL  LSL+ N  T++       L     L ++ N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 426 ILDLPN 431
           +  +P 
Sbjct: 184 LYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 43/210 (20%), Positives = 62/210 (29%), Gaps = 46/210 (21%)

Query: 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-----FGGFPMEVVNIKNLTFLDL 256
           D  I H + N               L +L++   +L      G  P        L  LDL
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VLGTLDL 84

Query: 257 RFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSI 315
             N     +P     L  L VL ++ N+   +LP                   G      
Sbjct: 85  SHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGA--------------LRGLGE--- 125

Query: 316 GRAKYLLEVLFL-NNFFTGCLPYEIGF--LSNSTVFDVGNNRLTGPIPHS-FGCLSSMQY 371
                 L+ L+L  N     LP  +            + NN LT  +P      L ++  
Sbjct: 126 ------LQELYLKGNELK-TLPPGL-LTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDT 176

Query: 372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
           L L  N  Y  +P+       L    L  N
Sbjct: 177 LLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 47.6 bits (112), Expect = 5e-06
 Identities = 8/65 (12%), Positives = 10/65 (15%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
               Y             P   P               P   P         +  +P   
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 121 FASER 125
            AS  
Sbjct: 299 PASVE 303

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 6/66 (9%), Positives = 6/66 (9%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                        P        P               P   P             P S 
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 118 FGPFAS 123
                 
Sbjct: 299 PASVEY 304

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 7/62 (11%), Positives = 10/62 (16%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  +P               P   P             P   P              +P+
Sbjct: 257 PIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPY 316

Query: 119 GP 120
             
Sbjct: 317 SS 318

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 6/60 (10%), Positives = 8/60 (13%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           Y    + +       P        P               P   P             P 
Sbjct: 237 YLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPV 296

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 6/65 (9%), Positives = 8/65 (12%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
                      P             + +   P   P             P   P      
Sbjct: 246 AVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYH 305

Query: 119 GPFAS 123
               S
Sbjct: 306 AGMKS 310

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 9/84 (10%), Positives = 12/84 (14%), Gaps = 9/84 (10%)

Query: 49  EIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
              +    Y  A          P   P               P   P             
Sbjct: 235 LFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVN 294

Query: 109 P---------RPPKPPSPFGPFAS 123
           P                   P++S
Sbjct: 295 PVSTPASVEYHAGMKSLNKAPYSS 318

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 7/69 (10%), Positives = 10/69 (14%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           +               P  + P   P               P   P              
Sbjct: 236 FYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNP 295

Query: 117 PFGPFASER 125
              P + E 
Sbjct: 296 VSTPASVEY 304

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 3/55 (5%), Positives = 6/55 (10%)

Query: 63  PEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             +          +    P        P               P      +    
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRS 288

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 10/60 (16%), Positives = 11/60 (18%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P       P    +                 PPP  P           P      SPF
Sbjct: 14  EGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPTIHFKESPF 73

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 46.8 bits (110), Expect = 8e-06
 Identities = 13/69 (18%), Positives = 14/69 (20%), Gaps = 1/69 (1%)

Query: 60  APAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
           +  P           P       P  I   P               PPP  P    S   
Sbjct: 1   SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSS-S 59

Query: 120 PFASERIQL 128
            FA   I  
Sbjct: 60  SFAVPTIHF 68

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 10/62 (16%), Positives = 11/62 (17%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
             P           P  +    P      P               PPP  P      S F
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61

Query: 119 GP 120
             
Sbjct: 62  AV 63

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 14/51 (27%), Positives = 17/51 (33%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           PP   PP+  C  P P  P    P            PP  P     +PP+ 
Sbjct: 17  PPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPAR 67

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 14/85 (16%), Positives = 17/85 (20%), Gaps = 4/85 (4%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP----PPPRPPKP 114
             P      P P  P    P            PP  P      PP              P
Sbjct: 21  APPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSP 80

Query: 115 PSPFGPFASERIQLAFKVIQRFKKR 139
            +P  P          K+ +     
Sbjct: 81  STPEAPDIPACPSPGQKIKKSTPAA 105

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 3/66 (4%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P P    PP        P P  P     P            PP  P   +   P      
Sbjct: 15  PGPPRIAPPKLACRT--PSPARPAL-RAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71

Query: 121 FASERI 126
            + + +
Sbjct: 72  LSVDEV 77

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 12/49 (24%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
               P P    PP      P P  P    P           RPP  P  
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGR 59

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 41.3 bits (95), Expect = 7e-04
 Identities = 13/66 (19%), Positives = 18/66 (27%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
           ++     P P  I PP        P  P    P            P          P A 
Sbjct: 8   DFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPAR 67

Query: 124 ERIQLA 129
            R++L+
Sbjct: 68  RRLRLS 73

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 20/42 (47%)

Query: 73  PEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
             P  P  P P PICP   PPPPPPP P    PPP   P   
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 18/42 (42%), Positives = 18/42 (42%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
             P  P  P P P  P   PPPPPPP P    PPP   P   
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 15/42 (35%), Positives = 15/42 (35%)

Query: 79  PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
             P       P P  P   PPPPPPP P    PP    P   
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 15/42 (35%), Positives = 16/42 (38%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPP 108
             P  P  P+  P  P     PPPPP P    PPP   P   
Sbjct: 93  VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
             P  P      P P P  P   PPPPPPP P    PP    P  ++
Sbjct: 93  VSPSAP----AAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 13/62 (20%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P PA    P    P  P      PP P  P   P                  P    +  
Sbjct: 16  PEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTP 75

Query: 119 GP 120
             
Sbjct: 76  SQ 77

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 16/59 (27%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P     + P P     P    P  P  +   PP PPPP   P               + 
Sbjct: 8   PEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTF 66

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 12/62 (19%), Positives = 12/62 (19%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
               P    P  P      PP PPP    P                  P      P  P 
Sbjct: 20  GGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPA 79

Query: 119 GP 120
             
Sbjct: 80  EA 81

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 15/57 (26%), Positives = 16/57 (28%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
           P      EP       P    P  P      PP PPPP   P +  K       F  
Sbjct: 8   PEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFED 64

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 11/103 (10%), Positives = 19/103 (18%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P                +      PE     P  P           P    + P   +  
Sbjct: 44  PPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAAS 103

Query: 119 GPFASERIQLAFKVIQRFKKRITYDPQGIANTWMGPDVCNKYK 161
              +S    +  +              G     + P    K +
Sbjct: 104 EAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQ 146

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 13/61 (21%), Positives = 16/61 (26%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERI 126
           PP PPPP+         E I         P      P  P         +     A E  
Sbjct: 39  PPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPG 98

Query: 127 Q 127
           +
Sbjct: 99  E 99

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 14/56 (25%), Positives = 15/56 (26%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASE 124
             P   P       PEP     P    P  P      PP P PPK          +
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQ 57

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 10/87 (11%), Positives = 18/87 (20%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P  +      P    E      P      P             P             +  
Sbjct: 68  PEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127

Query: 119 GPFASERIQLAFKVIQRFKKRITYDPQ 145
           G   + R+ L    + + + +  Y   
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHDYTAT 154

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 7/66 (10%), Positives = 11/66 (16%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
           P       P       P+ PPP                      P            +  
Sbjct: 24  PGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASE 83

Query: 119 GPFASE 124
               ++
Sbjct: 84  VAGGTQ 89

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 17/89 (19%), Positives = 21/89 (23%), Gaps = 4/89 (4%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            P  A         P  P     PP     P   P P     P  P PP P       + 
Sbjct: 10  TPGVAAATQAANGGPATP----APPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 118 FGPFASERIQLAFKVIQRFKKRITYDPQG 146
                 E ++            +   P G
Sbjct: 66  GHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 17/52 (32%)

Query: 69  PPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P  P  P            P  P PP     P   P P   + PK P+P  P
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRP 56

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 19/71 (26%)

Query: 62  APEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPF 121
           AP     P            P  P  P     P   P P     P  P PP+P       
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 122 ASERIQLAFKV 132
           A+    L   +
Sbjct: 64  AAGHATLREHL 74

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 14/65 (21%), Positives = 15/65 (23%), Gaps = 2/65 (3%)

Query: 54  GGGYGPAPAPEYCPPP--PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRP 111
           G     A        P  P PP     P   P+P     P  P PP P            
Sbjct: 9   GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68

Query: 112 PKPPS 116
                
Sbjct: 69  TLREH 73

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 14/55 (25%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPK 113
            APA      P  P + +      P    P          P P     P P   +
Sbjct: 327 AAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAPAPAAQR 381

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 14/59 (23%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P  AP     P    E     P    P     P    P          P P     P+P
Sbjct: 319 PGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAPAP 377

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 9/59 (15%), Positives = 13/59 (22%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             P         P       P  P + +      P    P          P P +  +P
Sbjct: 317 ALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAP 375

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 15/68 (22%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           Y  A   E  P   P  E          P  P    P     P    P          P+
Sbjct: 309 YKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPA 368

Query: 117 PFGPFASE 124
           P    A  
Sbjct: 369 PVEEVAPA 376

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 12/39 (30%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
            P  P  P  P  P      P  P P  P     P PP 
Sbjct: 308 VPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPV 346

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 12/46 (26%), Positives = 15/46 (32%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
                P +P+ P  P         P  P P  P     P PP + P
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 15/46 (32%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPP 106
            A      P  P  P  P     +P+ P P  P     P PP   P
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 76  ICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           I     P +P+ P  P  P      P  P P  P     P+P
Sbjct: 303 INAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTP 344

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 10/54 (18%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
              P        P PP                PP P  P        P    G 
Sbjct: 427 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 18/68 (26%), Positives = 19/68 (27%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G  G    P        P PP  + P     E     PP P  P        P   P   
Sbjct: 422 GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 481

Query: 113 KPPSPFGP 120
             P P GP
Sbjct: 482 GLPGPAGP 489

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 13/54 (24%), Positives = 13/54 (24%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
              P P      P    E   P PP    P           PP P  P    G 
Sbjct: 418 MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE 471

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 11/54 (20%), Positives = 11/54 (20%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P P               P  P    P           PP P  P       GP
Sbjct: 421 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP 474

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 13/68 (19%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G  G          P    P            P    P        P   P     P P 
Sbjct: 428 GEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487

Query: 113 KPPSPFGP 120
            PP   G 
Sbjct: 488 GPPGEAGK 495

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 13/66 (19%)

Query: 55  GGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKP 114
           G  G          P    E   P PP                PP P  P          
Sbjct: 416 GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 475

Query: 115 PSPFGP 120
            SP   
Sbjct: 476 GSPGFQ 481

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 14/68 (20%), Positives = 14/68 (20%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G  G    P P     P           PP             P   P     P P  PP
Sbjct: 431 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 490

Query: 113 KPPSPFGP 120
                 G 
Sbjct: 491 GEAGKPGE 498

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 15/68 (22%), Positives = 15/68 (22%)

Query: 53  GGGGYGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           G  G          P PP    P            P P  P        P   P     P
Sbjct: 425 GAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 484

Query: 113 KPPSPFGP 120
            P  P G 
Sbjct: 485 GPAGPPGE 492

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 193 LSDFLEKLEDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFPMEVVNIKN 250
           L   L++ + +      S+N    I K+     L+ L  L V+NN++          + +
Sbjct: 37  LGATLDQFDAIDF----SDN---EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89

Query: 251 LTFLDLRFNSFSGPVPAEIFYL----DLDVLFLNNNKFSQ 286
           LT L L  NS       ++  L     L  L +  N  + 
Sbjct: 90  LTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFL 254
             +  +L +           I  + + L     +D S+N++    GFP     ++ L  L
Sbjct: 18  AVRDRELDL----RGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTL 69

Query: 255 DLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS 285
            +  N            L DL  L L NN   
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 9/67 (13%), Positives = 13/67 (19%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
           P        P     P          P       P     +P        P  +  +  A
Sbjct: 2   PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASA 61

Query: 130 FKVIQRF 136
               Q+ 
Sbjct: 62  PPQEQKQ 68

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 6/51 (11%), Positives = 7/51 (13%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
           P              P          P       P      P    +   P
Sbjct: 2   PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 64  EYCPPPPPPPEPICP-PPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
             C   PP   P  P   PPP     P PP     PPPP     PP     PP P
Sbjct: 51  FDCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPP 105

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 18/51 (35%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
             P     PP   PP      P PP     PPPP     PP     PPPP 
Sbjct: 56  SPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 10/71 (14%), Positives = 15/71 (21%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
           +  +P     PP             P   I    P P    P                P+
Sbjct: 51  FVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPA 110

Query: 117 PFGPFASERIQ 127
                  E ++
Sbjct: 111 SIPHLILELLK 121

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 11/78 (14%), Positives = 16/78 (20%)

Query: 58  GPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            P    +  P    P     PP    +        P        P P    P      S 
Sbjct: 41  LPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSY 100

Query: 118 FGPFASERIQLAFKVIQR 135
              + +        +I  
Sbjct: 101 MDSYQTSSPASIPHLILE 118

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 12/66 (18%), Positives = 15/66 (22%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPF 118
            A  P      P    PI    PP   +         P        P P    P+    +
Sbjct: 39  AALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGY 98

Query: 119 GPFASE 124
               S 
Sbjct: 99  SYMDSY 104

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 43/315 (13%), Positives = 83/315 (26%), Gaps = 104/315 (33%)

Query: 197 LEKLEDLA---IFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPMEVV 246
           +  L +L+   +   NS+   + +  + + +     L++S N L            +  +
Sbjct: 53  VTSL-NLSGNSLGFKNSDELVQILAAIPANVT---SLNLSGNFLSYKSSDELVKT-LAAI 107

Query: 247 NIKNLTFLDLRFNSFSGPVPAEIFYL---------DLDVLFLNNNKFSQNLPENIGSTGA 297
               +T LDL +N FS                    +  L L  N        ++G   +
Sbjct: 108 P-FTITVLDLGWNDFS---SKSSSEFKQAFSNLPASITSLNLRGN--------DLGIKSS 155

Query: 298 LYVTFA--------------NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLS 343
             +                  N        S      L + L                 +
Sbjct: 156 DELIQILAAIPANVNSLNLRGNNLA-----SKN-CAELAKFLASIP-------------A 196

Query: 344 NSTVFDVGNNRLTGPIPHSFGCL----------SSMQYLNLAMNQFYGPVPEIVCQL--- 390
           + T  D+  N L                     + +  LNL +N  +GP  E +  L   
Sbjct: 197 SVTSLDLSANLLGLK-----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 391 -PKLVNLSLSYNYFTQVGPECRKLIKR--------KVLDVRMNCILDLPNQRSREECGKF 441
              L  + L Y+    +  E  K +           ++D     I               
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP--------SHSIP 303

Query: 442 FSESKKCPNERSLTL 456
            S   +  + ++   
Sbjct: 304 ISNLIRELSGKADVP 318

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 4/42 (9%), Positives = 8/42 (19%)

Query: 84  EPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
           +P+                          +  +     AS R
Sbjct: 258 QPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGR 299

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 1/42 (2%), Positives = 2/42 (4%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQLA 129
                                             +     L 
Sbjct: 263 KKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQ 304

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 1/43 (2%), Positives = 1/43 (2%), Gaps = 3/43 (6%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           P                                          
Sbjct: 259 PLDAKKSA---KTTAAGTVTVLDQRTMASGQQAVAYLHDIASG 298

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 2/59 (3%), Positives = 3/59 (5%), Gaps = 4/59 (6%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
           P                  +                           P           
Sbjct: 259 PLDAKKS----AKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRL 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 47/294 (15%), Positives = 84/294 (28%), Gaps = 96/294 (32%)

Query: 193 LSDFLEKLEDLAIFHAN-SNNFT-----------KSIPKMTSKLKFLYELDVSNNKLFGG 240
           LS+ +   +DL    A  S+ FT           + + +   K   L+ + +S+N  FG 
Sbjct: 52  LSENIASKKDLE--IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG- 107

Query: 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYV 300
            P     + +     L  ++             L+ L+L+NN         +G       
Sbjct: 108 -PTAQEPLIDF----LSKHT------------PLEHLYLHNN--------GLGPQAG--- 139

Query: 301 TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP-- 358
                       + I RA   L+ L +N                      G NRL     
Sbjct: 140 ------------AKIARA---LQELAVNKKAKNA--------PPLRSIICGRNRLENGSM 176

Query: 359 --IPHSFGCLSSMQYLNLAMNQFYGP-VPEIVCQL----PKLVNLSLSYNYFTQVG---- 407
                +F     +  + +  N      +  ++ +      +L  L L  N FT +G    
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 408 ----PECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSES-KKCPNERSLTL 456
                    L   + L +    +                 ++  K  N    TL
Sbjct: 237 AIALKSWPNL---RELGLNDCLL--------SARGAAAVVDAFSKLENIGLQTL 279

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 49/293 (16%), Positives = 85/293 (29%), Gaps = 75/293 (25%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFT----KSIPKMTSKLKFLYELDVSNNKL--FGG----- 240
            L   L K   L     + N F     + +    SK   L  L + NN L    G     
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 241 ------FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ-NLPEN-I 292
                    +  N   L  +    N        +    +    F ++       + +N I
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMK----EWAKTFQSHRLLHTVKMVQNGI 199

Query: 293 GSTGALYV---TFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFT--GCLPYEIG-FLSNS 345
              G  ++     A  +               L+VL L +N FT  G     +   L + 
Sbjct: 200 RPEGIEHLLLEGLAYCQE--------------LKVLDLQDNTFTHLGSS--ALAIALKSW 243

Query: 346 T---VFDVGNNRLTGPIPHSFGCL-----------SSMQYLNLAMNQFYGPVPEIVCQ-- 389
                  + +  L+     + G               +Q L L  N+        +    
Sbjct: 244 PNLRELGLNDCLLS-----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 390 ---LPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL--PNQRSREE 437
              +P L+ L L+ N F++      ++  R+V   R    LD     +   +E
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEI--REVFSTRGRGELDELDDMEELTDE 349

>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Length = 451

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 9/83 (10%), Positives = 15/83 (18%), Gaps = 1/83 (1%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
           + C   P   E +       + I  P        P                       + 
Sbjct: 173 KACRNDPFTEEEMTAMNLDRKTI-VPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASW 231

Query: 124 ERIQLAFKVIQRFKKRITYDPQG 146
                + K +   K   T     
Sbjct: 232 AFFTFSPKAMSELKDAATKTLDA 254

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 12/29 (41%)

Query: 88  PPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
                 PPP   PP    PPP  PP  PS
Sbjct: 110 NATVSMPPPSSSPPSSVMPPPVMPPPSPS 138

>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Length = 441

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 8/58 (13%), Positives = 9/58 (15%), Gaps = 2/58 (3%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPP--PPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP 112
           YG     E         +P                       P   P      P R  
Sbjct: 212 YGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYNGPSVVPEWLHDEPERRR 269

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 7/50 (14%), Positives = 9/50 (18%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
                      P      +  PP     PPP          P      + 
Sbjct: 3   AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 7/49 (14%), Positives = 9/49 (18%)

Query: 67  PPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPP 115
                      P         PP     PPP          P +  +  
Sbjct: 3   AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCT 51

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 41.1 bits (95), Expect = 5e-04
 Identities = 9/50 (18%), Positives = 10/50 (20%), Gaps = 3/50 (6%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
            +  Y  P         PP     P   PP          P        R
Sbjct: 7   LSNGYNNPNVNASNMYGPPQNMSLP---PPQTQTIQGTDQPYQYSQCTGR 53

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 6/48 (12%), Positives = 10/48 (20%)

Query: 78  PPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASER 125
                     P         PP     PPP  +  +       ++   
Sbjct: 4   KAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCT 51

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 40.7 bits (94), Expect = 7e-04
 Identities = 8/50 (16%), Positives = 10/50 (20%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG 119
                      P         PP     PPP         +P +     G
Sbjct: 3   AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 52/307 (16%), Positives = 99/307 (32%), Gaps = 75/307 (24%)

Query: 192 SLSDFLE----KLEDLAIFHANSNNFT----KSIPKMTSKLKFLYELDVSNNKLFGGFPM 243
            +   L+    K++ L++    +   T      +      L  L EL +S+N L G   +
Sbjct: 75  CVLQGLQTPSCKIQKLSL---QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGL 130

Query: 244 EVV------NIKNLTFLDLRFNSFSGPVPAEIFYL-----DLDVLFLNNNKFSQNLPENI 292
           +++          L  L L + S S      +  +     D   L ++NN        +I
Sbjct: 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN--------DI 182

Query: 293 GSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFL-NNFFT--GCLPYEIGFLSNSTV-- 347
              G              +   +  +   LE L L +   T   C        S +++  
Sbjct: 183 NEAGVRV-----------LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 348 FDVGNNRLTGPIPHSFG----------CLSSMQYLNLAMNQF----YGPVPEIVCQLPKL 393
             +G+N+L        G            S ++ L +          G +  ++     L
Sbjct: 232 LALGSNKLG-----DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC---ILDLPNQRSREECGKFFSES-KKCP 449
             LSL+ N   ++G E  +L+   +L+    C    L + +      C   FS    +  
Sbjct: 287 KELSLAGN---ELGDEGARLLCETLLEP--GCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 450 NERSLTL 456
               L +
Sbjct: 342 FLLELQI 348

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 11/64 (17%), Gaps = 2/64 (3%)

Query: 68  PPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFASERIQ 127
              P      P     EP                  P    P        F   AS    
Sbjct: 2   AMDPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDF--VASGDNT 59

Query: 128 LAFK 131
           L+  
Sbjct: 60  LSIT 63

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 15/89 (16%), Positives = 19/89 (21%), Gaps = 9/89 (10%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPP---------PPPPPPPPPPPPPPPPPPP 109
             P+ +               P  P P   P             P      P      P 
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 110 RPPKPPSPFGPFASERIQLAFKVIQRFKK 138
           +PP PP+               VI  F  
Sbjct: 70  KPPLPPARTQGTPVHLNYRQKGVIDVFLH 98

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 217 IPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL--DL 274
           IP  T KL      D+ +  L          +  LT+L+L +N     + A +F    +L
Sbjct: 33  IPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTEL 85

Query: 275 DVLFLNNNKFSQNLPENI--GSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT 332
             L L NN+   +LP  +    T    +    N+    +PS +      L+ L LN    
Sbjct: 86  GTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL 143

Query: 333 GCLPYEIGF--LSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYLNLAMNQF 379
             +P    F  L+N     +  N+L   +PH +F  L  +Q + L  NQF
Sbjct: 144 QSIPAGA-FDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191

>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 9/47 (19%), Positives = 11/47 (23%), Gaps = 1/47 (2%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
                P  P P P   +   P    P           P P    P +
Sbjct: 17  EGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLP-AALPGA 62

>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa 1090} SCOP: b.52.1.4 PDB: 2g6g_A Length = 422

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 5/67 (7%)

Query: 72  PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFG---PFASERIQL 128
               I   P P   +   P  P   P P                 P      +A++    
Sbjct: 3   QSRSIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVY--TVVPHLSMPHWAAQDFAK 60

Query: 129 AFKVIQR 135
           + +  + 
Sbjct: 61  SLQSFRL 67

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 35/210 (16%), Positives = 60/210 (28%), Gaps = 60/210 (28%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTF 253
           L K+  + I +         I      +L  L  L + N  L  F      V +      
Sbjct: 79  LSKVTHIEIRN---TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK-VYSTDIFFI 134

Query: 254 LDLRFNSFSGPVPAEIF---YLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGP 310
           L++  N +   +P   F     +   L L NN F  ++                  F G 
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYA--------------FNGT 179

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF-GCLSSM 369
                      L+ ++LN                       N  LT     +F G  S  
Sbjct: 180 K----------LDAVYLNK----------------------NKYLTVIDKDAFGGVYSGP 207

Query: 370 QYLNLAMNQFYGPVPEIVCQ-LPKLVNLSL 398
             L+++       +P    + L +L+  + 
Sbjct: 208 SLLDVSQTSV-TALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 28/231 (12%), Positives = 52/231 (22%), Gaps = 69/231 (29%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKL-------FGGFPMEVVNIKNLTFLDLRFNSF 261
              +    IP +    +    L +    L       F   P       N++ + +  +  
Sbjct: 19  TCKDIQ-RIPSLPPSTQ---TLKLIETHLRTIPSHAFSNLP-------NISRIYVSIDVT 67

Query: 262 SGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAK 319
              + +  FY    +  + + N +    +  +                            
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD---------ALKE--------------- 103

Query: 320 YLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCLSSMQYLNLAMNQ 378
                                 L       + N  L   P             L +  N 
Sbjct: 104 ----------------------LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 379 FYGPVPEIVCQ-LPK-LVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCIL 427
           +   +P    Q L    + L L  N FT V        K   + +  N  L
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 15/99 (15%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMT-SKLKFLYELDVSNNKL-------FGGFPMEVVNI 248
           L   E+L   +  +    + +       L  L  L +  + L       F   P      
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP------ 80

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQN 287
             L+ L+L FN+        +  L L  L L+ N    +
Sbjct: 81  -RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 14/93 (15%), Positives = 20/93 (21%), Gaps = 6/93 (6%)

Query: 31  HYEV-----AAGDVVAET-RRQELEIIIGGGGYGPAPAPEYCPPPPPPPEPICPPPPPPE 84
           H +V     A GD        +E +         P+      P P P            E
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSRE 129

Query: 85  PICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            +       P P                +   P
Sbjct: 130 ALAEAALESPRPALVRSASSDTSEELNSQDSPP 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL 256
           L  +E+L I     N   K I  + +    L EL +S N++     +E   + NL  L +
Sbjct: 66  LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYM 122

Query: 257 RFNSFSGPVPAEIFYL----DLDVLFLNNNKFSQNLPENIGSTG 296
             N  +     EI  L     L+ L L  N    +  EN  ++ 
Sbjct: 123 SNNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 10/72 (13%), Positives = 13/72 (18%), Gaps = 3/72 (4%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
             P    +         E         + +     P               PP       
Sbjct: 4   MNPDIEKD-QTSDEVTVET--TSVFRADFLSELDAPAQAGTESAVSGVEGLPPGSALLVV 60

Query: 117 PFGPFASERIQL 128
             GP A  R  L
Sbjct: 61  KRGPNAGSRFLL 72

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Length = 398

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 8/41 (19%), Positives = 9/41 (21%)

Query: 70  PPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
             PP     P P    +   P        P         PR
Sbjct: 189 VCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPR 229

>2gj7_F Glycoprotein E; FC receptor, low resolution, immune system-virus-viral prote complex; HET: NAG BMA MAN GAL FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1 Length = 401

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 21/70 (30%)

Query: 61  PAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGP 120
           PAP   PPP P            +      P    P  PPPP PP   P  P+     G 
Sbjct: 143 PAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLPPPPAPPRSWPSAPEVSHVRGV 202

Query: 121 FASERIQLAF 130
                   A 
Sbjct: 203 TVRMETPEAI 212

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Length = 391

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 13/55 (23%), Gaps = 3/55 (5%)

Query: 56  GYGPAPAPE-YCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
           G    P PE    P PP  +      P   P+   P       P           
Sbjct: 168 GLTGLPTPELILDPCPPSLQA--SDAPQGAPVQYVPYNGSGAFPAWGAARTSARR 220

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Length = 391

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 15/106 (14%), Positives = 23/106 (21%), Gaps = 15/106 (14%)

Query: 24  LILHSSLHYEVAAGDVVAETR-----RQELEIIIGGGGYGPAPAP-------EYCPPPPP 71
           ++L          G V+              +    G +              +     P
Sbjct: 117 VLLVDVCAL---IGRVLGGLLDLPVVLHRWGVDPTAGPFSDRAHELLDPVCRHHGLTGLP 173

Query: 72  PPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSP 117
            PE I  P PP       P   P    P       P     +  + 
Sbjct: 174 TPELILDPCPPSLQASDAPQGAPVQYVPYNGSGAFPAWGAARTSAR 219

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 5/74 (6%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPP-----K 113
                ++       P P   PPP P+   P          P           PP      
Sbjct: 19  EEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVEGTLPPLSLLDP 78

Query: 114 PPSPFGPFASERIQ 127
                  ++ E ++
Sbjct: 79  AEVKQKSYSPESLE 92

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 11/58 (18%), Positives = 11/58 (18%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPS 116
            A                     PP  I PPP P  P P          P        
Sbjct: 10  KAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVE 67

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Length = 398

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 8/53 (15%), Positives = 12/53 (22%)

Query: 57  YGPAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPP 109
           +  +           PP  +    P    +   P           PP P  P 
Sbjct: 182 HQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPE 234

>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Length = 454

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 7/77 (9%), Positives = 12/77 (15%)

Query: 64  EYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPRPPKPPSPFGPFAS 123
                       +     P        P                     +  +       
Sbjct: 187 SIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLR 246

Query: 124 ERIQLAFKVIQRFKKRI 140
               L   VI + K R+
Sbjct: 247 ATFILTRAVINQLKDRV 263

>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Length = 412

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 10/52 (19%), Positives = 12/52 (23%), Gaps = 2/52 (3%)

Query: 59  PAPAPEYCPPPPPPPEPICPPPPPPEPICPPPPPPPPPPPPPPPPPPPPPPR 110
             P  +  PP    PE      P    + P P       P          P 
Sbjct: 195 GNPFIDIFPPSLQEPEF--RARPRRHELRPVPFAEQGDLPAWLSSRDTARPL 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.6
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.55

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.7e-40  Score=322.85  Aligned_cols=296  Identities=25%  Similarity=0.420  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCC--CCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcC
Q 011101          127 QLAFKVIQRFKKRITYDPQGIANTWM-GPDVCNK--YKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDL  203 (493)
Q Consensus       127 ~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~--w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L  203 (493)
                      ..+.+++.+||+++. |+. .+.+|. +.++| .  |.||.|+...  ...+|+.|+|++|++++. ..++..+..+++|
T Consensus         5 ~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C-~~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L   78 (313)
T 1ogq_A            5 PQDKQALLQIKKDLG-NPT-TLSSWLPTTDCC-NRTWLGVLCDTDT--QTYRVNNLDLSGLNLPKP-YPIPSSLANLPYL   78 (313)
T ss_dssp             HHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTT-TTCSTTEEECCSS--SCCCEEEEEEECCCCSSC-EECCGGGGGCTTC
T ss_pred             HHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCC-cCCCcceEeCCCC--CCceEEEEECCCCCccCC-cccChhHhCCCCC
Confidence            457789999999994 555 688998 55677 7  9999997532  125899999999999851 1268899999999


Q ss_pred             cEEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccC
Q 011101          204 AIFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNN  281 (493)
Q Consensus       204 ~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~  281 (493)
                      ++|++++ |++++.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..+... +|++|+|++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence            9999995 99999999999999999999999999998999999999999999999999999999888776 999999999


Q ss_pred             ccCCCCccccccccc-cc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCC
Q 011101          282 NKFSQNLPENIGSTG-AL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI  359 (493)
Q Consensus       282 n~l~~~~p~~~~~~~-~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  359 (493)
                      |.+.+.+|..++.+. .+ +|++++|.+.+.+|..+..+. |++|++++|.+++..+..|..+++|++|+|++|.+++.+
T Consensus       159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence            999989999998886 65 899999999988899888887 999999999999888888899999999999999998665


Q ss_pred             cccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc-CCCCC
Q 011101          360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC-ILDLP  430 (493)
Q Consensus       360 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~-l~~lp  430 (493)
                      +. +..+++|++|+|++|+|++.+|..+..+++|+.|+|++|+|++..+....+++|+.|++++|. +.+.|
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence            55 778889999999999998888988999999999999999999766666888888989888886 55543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.9e-37  Score=329.28  Aligned_cols=297  Identities=16%  Similarity=0.244  Sum_probs=222.8

Q ss_pred             hhHHHHHHHHHHHHhhhcccCCCCCCC-------CCC-CCCCCCCC---CceeeccCCCCCccceEEEEcCCCCcCCCCC
Q 011101          123 SERIQLAFKVIQRFKKRITYDPQGIAN-------TWM-GPDVCNKY---KGFVCDVRPDIKKKAVAGVDFNGYRFNGPDF  191 (493)
Q Consensus       123 s~~~~~~~~~L~~~k~~~~~d~~~~~~-------~W~-~~~~C~~w---~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~  191 (493)
                      .+...+++.|+.+++.++..+.|....       +|. +.++| .|   .||.|+..     .+|+.|+|+++++.|   
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c-~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g---   95 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD-MWGAQPGVSLNSN-----GRVTGLSLEGFGASG---   95 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG-GTTCCTTEEECTT-----CCEEEEECTTSCCEE---
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc-cccCCCCeEEcCC-----CCEEEEEecCcccCC---
Confidence            456677999999999998777665433       898 56677 99   99999753     689999999999999   


Q ss_pred             ccchhhhCCCcCcEEEccCCcC----------------------------------------------------------
Q 011101          192 SLSDFLEKLEDLAIFHANSNNF----------------------------------------------------------  213 (493)
Q Consensus       192 ~~~~~l~~l~~L~~L~L~~n~i----------------------------------------------------------  213 (493)
                      .+|..+++|++|++|+|++|++                                                          
T Consensus        96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~  175 (636)
T 4eco_A           96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI  175 (636)
T ss_dssp             EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred             cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence            8999999999999999988843                                                          


Q ss_pred             --------------------CCccCcccCCCCCCCEEECcCCCCCCC-----------------Cccccc--CCCCCcEE
Q 011101          214 --------------------TKSIPKMTSKLKFLYELDVSNNKLFGG-----------------FPMEVV--NIKNLTFL  254 (493)
Q Consensus       214 --------------------~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L  254 (493)
                                          ++ +|..|+++++|++|+|++|.+++.                 +|..+.  ++++|++|
T Consensus       176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L  254 (636)
T 4eco_A          176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV  254 (636)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence                                34 778889999999999999999875                 888888  99999999


Q ss_pred             EcccccCCCCCCcccccc-ccCEEEccCcc-CCC-Ccccccccc------ccc-hhhcccCcCCCCCch--hhhhhhhhH
Q 011101          255 DLRFNSFSGPVPAEIFYL-DLDVLFLNNNK-FSQ-NLPENIGST------GAL-YVTFANNEFTGPIPS--SIGRAKYLL  322 (493)
Q Consensus       255 ~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~-l~~-~~p~~~~~~------~~l-~L~l~~n~l~~~~p~--~l~~l~~L~  322 (493)
                      +|++|.+.+.+|..+... +|++|+|++|+ +++ .+|..++.+      ..+ +|++++|.++ .+|.  .++++++|+
T Consensus       255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG  333 (636)
T ss_dssp             EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred             EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence            999999998999888776 89999999998 887 788777765      555 7888888877 7777  777777777


Q ss_pred             HHHhccccccCCCcccccCCC-----------------------C-CcEEEecCCCCCCCCcccccCCC--CCCEEEccc
Q 011101          323 EVLFLNNFFTGCLPYEIGFLS-----------------------N-STVFDVGNNRLTGPIPHSFGCLS--SMQYLNLAM  376 (493)
Q Consensus       323 ~L~L~~n~l~~~~p~~l~~l~-----------------------~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~  376 (493)
                      +|++++|.+.|.+| .|..++                       + |++|++++|.++ .+|..+..+.  +|++|++++
T Consensus       334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             EEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred             EEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence            77777777776665 544444                       4 555555555555 4554444433  555555666


Q ss_pred             CCCCCCcchhhc-------CCCCCcEEeeeCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCCCC
Q 011101          377 NQFYGPVPEIVC-------QLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       377 N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      |++++.+|..+.       .+.+|++|+|++|+|++++.. +..+++|++|+|++|.|+.+|..
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            655555555555       555666777777776666553 34567777777777777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.9e-36  Score=328.81  Aligned_cols=295  Identities=24%  Similarity=0.361  Sum_probs=213.6

Q ss_pred             hHHHHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCc---cc-----
Q 011101          124 ERIQLAFKVIQRFKKRITYDPQGIANTWM-GPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFS---LS-----  194 (493)
Q Consensus       124 ~~~~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~---~~-----  194 (493)
                      .....+++|+.+||+++. |+. .+++|. +.++| .|.||.|+.      .+|+.|||+++.+.+   .   ++     
T Consensus         8 ~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C-~w~gv~C~~------~~v~~L~L~~~~l~g---~~~~l~~~l~~   75 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPC-TFDGVTCRD------DKVTSIDLSSKPLNV---GFSAVSSSLLS   75 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGG-GSTTEEEET------TEEEEEECTTSCCCE---EHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCc-CCcceEECC------CcEEEEECCCCCcCC---ccCccChhHhc
Confidence            336678899999999996 777 899997 66777 999999971      467777777777665   3   22     


Q ss_pred             ------------------hhhhCCCcCcEEEccCCcCCCccCc--ccCCCCCCCEEECcCCCCCCCCcccc-cCCCCCcE
Q 011101          195 ------------------DFLEKLEDLAIFHANSNNFTKSIPK--MTSKLKFLYELDVSNNKLFGGFPMEV-VNIKNLTF  253 (493)
Q Consensus       195 ------------------~~l~~l~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~  253 (493)
                                        ..++.+++|++|+|++|.+++.+|.  .++++++|++|+|++|.+++..+..+ .++++|++
T Consensus        76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence                              3566667777777777777776666  67777777777777777666555544 55666666


Q ss_pred             EEcccccCCCCCCcc--------------------------ccccccCEEEccCccCCCCccccccccccc-hhhcccCc
Q 011101          254 LDLRFNSFSGPVPAE--------------------------IFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE  306 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~--------------------------~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~  306 (493)
                      |+|++|.+++..+..                          ....+|++|+|++|.+.+.++. ++.+..+ +|++++|.
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK  234 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence            666666655443332                          1122677777777777766665 7777766 78888888


Q ss_pred             CCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCC-CCCCEEEcccCCCCCCcch
Q 011101          307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCL-SSMQYLNLAMNQFYGPVPE  385 (493)
Q Consensus       307 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~  385 (493)
                      +.+.++..+..+++|++|++++|.+.+.++..  .+++|++|+|++|.+++.+|..+..+ ++|++|+|++|++++.+|.
T Consensus       235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~  312 (768)
T 3rgz_A          235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP  312 (768)
T ss_dssp             CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred             CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence            87777777888888888888888777666554  67777777777777777777777664 7888888888888877888


Q ss_pred             hhcCCCCCcEEeeeCCcCCC-CCcc-ccCCCCCCEEEeeCCcCC-CCCCCC
Q 011101          386 IVCQLPKLVNLSLSYNYFTQ-VGPE-CRKLIKRKVLDVRMNCIL-DLPNQR  433 (493)
Q Consensus       386 ~l~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~L~~N~l~-~lp~~~  433 (493)
                      .+..+++|++|+|++|++++ ++.. +..+++|++|++++|.++ .+|..+
T Consensus       313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  363 (768)
T 3rgz_A          313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL  363 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred             HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence            88888888888888888874 4443 777888888888888877 566543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.6e-35  Score=321.47  Aligned_cols=284  Identities=26%  Similarity=0.421  Sum_probs=242.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++++|.+++   .+|..+..+++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..+..+++|+
T Consensus       393 ~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             TCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             cCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            4568888888888887   6788888888888888888888888888888888888888888888888888888888888


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF  330 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  330 (493)
                      +|+|++|.+++.+|..+... +|++|+|++|++.+.+|..++.+..+ +|++++|.+.+.+|..++.+++|+.|++++|.
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            88888888888888877766 88888888888888888888888877 88888888888888888888888888888888


Q ss_pred             ccCCCccc----------------------------------------------------------------------cc
Q 011101          331 FTGCLPYE----------------------------------------------------------------------IG  340 (493)
Q Consensus       331 l~~~~p~~----------------------------------------------------------------------l~  340 (493)
                      ++|.+|..                                                                      +.
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            87766643                                                                      33


Q ss_pred             CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEE
Q 011101          341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVL  419 (493)
Q Consensus       341 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L  419 (493)
                      .+.+|++|||++|+++|.+|..|+.+++|++|+|++|+++|.+|..++.+++|+.|||++|++++. +..+..+++|++|
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            457899999999999999999999999999999999999999999999999999999999999985 5588999999999


Q ss_pred             EeeCCcCCC-CCC--CCCchhhcccccCCCCCCCCCCCcccCCCCCC
Q 011101          420 DVRMNCILD-LPN--QRSREECGKFFSESKKCPNERSLTLVPCARNR  463 (493)
Q Consensus       420 ~L~~N~l~~-lp~--~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~~~  463 (493)
                      +|++|++++ +|.  ++..+....+.+|+..|...    +..|....
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~  752 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN  752 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence            999999986 664  34555667789999999754    22786443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.4e-35  Score=320.64  Aligned_cols=290  Identities=18%  Similarity=0.248  Sum_probs=231.4

Q ss_pred             hhHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCC--CCCC------------CceeeccCCCCCccceEEEEcC
Q 011101          123 SERIQLAFKVIQRFKKRITYDPQGIANTWMG------PDV--CNKY------------KGFVCDVRPDIKKKAVAGVDFN  182 (493)
Q Consensus       123 s~~~~~~~~~L~~~k~~~~~d~~~~~~~W~~------~~~--C~~w------------~gv~c~~~~~~~~~~l~~L~L~  182 (493)
                      .+....++.||.+||+++.+.      +|..      .++  | .|            .||.|+..     .+|+.|+|+
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls  331 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLA  331 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECTT-----SCEEEEECT
T ss_pred             cccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCcc-ccccccccccccCcCceEecCC-----CCEEEEECc
Confidence            345677899999999999533      5652      345  6 99            99999852     689999999


Q ss_pred             CCCcCCCCCccchhhhCCCcCcEEEc-cCCcCCCc---------------------------------------------
Q 011101          183 GYRFNGPDFSLSDFLEKLEDLAIFHA-NSNNFTKS---------------------------------------------  216 (493)
Q Consensus       183 ~n~l~~~~~~~~~~l~~l~~L~~L~L-~~n~i~~~---------------------------------------------  216 (493)
                      ++++.|   .+|..+++|++|++|+| ++|.++|.                                             
T Consensus       332 ~~~L~G---~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l  408 (876)
T 4ecn_A          332 GFGAKG---RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI  408 (876)
T ss_dssp             TTCCEE---EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             cCCCCC---cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence            999999   89999999999999999 76654333                                             


Q ss_pred             -------------------------------cCcccCCCCCCCEEECcCCCCCC-----------------CCccccc--
Q 011101          217 -------------------------------IPKMTSKLKFLYELDVSNNKLFG-----------------GFPMEVV--  246 (493)
Q Consensus       217 -------------------------------~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--  246 (493)
                                                     +|..|+++++|++|+|++|.|++                 .+|..++  
T Consensus       409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~  488 (876)
T 4ecn_A          409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS  488 (876)
T ss_dssp             HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred             hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence                                           78889999999999999999987                 3888877  


Q ss_pred             CCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCcc-CCC-Cccccccccc-------cc-hhhcccCcCCCCCch--
Q 011101          247 NIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNK-FSQ-NLPENIGSTG-------AL-YVTFANNEFTGPIPS--  313 (493)
Q Consensus       247 ~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~-l~~-~~p~~~~~~~-------~l-~L~l~~n~l~~~~p~--  313 (493)
                      ++++|++|+|++|.+.+.+|..+... +|++|+|++|+ +++ .+|..++.+.       .+ +|++++|.+. .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            99999999999999999999888877 99999999998 888 7888887775       55 8999999998 8888  


Q ss_pred             hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCC-CCEEEcccCCCCCCcchhhcCCCC
Q 011101          314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSS-MQYLNLAMNQFYGPVPEIVCQLPK  392 (493)
Q Consensus       314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~  392 (493)
                      .++++++|++|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |++|+|++|+++ .+|..+..+..
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence            8999999999999999988 777 7888888888888888888 78877888887 888888888887 56665554432


Q ss_pred             --CcEEeeeCCcCCC-----------------------------CCccc-cCCCCCCEEEeeCCcCCCCCCC
Q 011101          393 --LVNLSLSYNYFTQ-----------------------------VGPEC-RKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       393 --L~~L~Ls~N~l~~-----------------------------~~~~~-~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                        |+.|+|++|+|++                             ++..+ ..+++|+.|+|++|.|+.+|..
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence              5555555555544                             33322 2456666666666666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=9.3e-34  Score=281.13  Aligned_cols=275  Identities=16%  Similarity=0.204  Sum_probs=218.0

Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCCC-----CCCCCCCCCceeeccCC----CCCccceEEEEcCCCCcCCCCCccch
Q 011101          125 RIQLAFKVIQRFKKRITYDPQGIANTWM-----GPDVCNKYKGFVCDVRP----DIKKKAVAGVDFNGYRFNGPDFSLSD  195 (493)
Q Consensus       125 ~~~~~~~~L~~~k~~~~~d~~~~~~~W~-----~~~~C~~w~gv~c~~~~----~~~~~~l~~L~L~~n~l~~~~~~~~~  195 (493)
                      ....++.++..|+..+..|+.+....|.     ..++| .|.|+.|+...    .....+++.|+|++|+++.    +|.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~----lp~   98 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLPQ----FPD   98 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS----CCS
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhccccccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCchh----cCh
Confidence            3445678999999999888887788893     45677 99999996321    1223679999999999986    788


Q ss_pred             hhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccc----
Q 011101          196 FLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY----  271 (493)
Q Consensus       196 ~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~----  271 (493)
                      .+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|.++++|++|+|++|.+.+.+|..+..    
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            8888999999999999999 78888999999999999999997 78889999999999999999988888887653    


Q ss_pred             ------cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCC
Q 011101          272 ------LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNS  345 (493)
Q Consensus       272 ------~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  345 (493)
                            .+|++|+|++|.+.                        .+|..++.+++|++|++++|.+++ ++..+..+++|
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~------------------------~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR------------------------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC------------------------CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             hhhccCCCCCEEECcCCCcC------------------------cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence                  25555555555544                        455666777777777788877774 55567788888


Q ss_pred             cEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC-CCccccCCCCCCEEEeeCC
Q 011101          346 TVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ-VGPECRKLIKRKVLDVRMN  424 (493)
Q Consensus       346 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L~~N  424 (493)
                      ++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+ ++..+..+++|+.+++..|
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            888888888887888888888888888888888887888888888888888888877666 4557788888888888888


Q ss_pred             cCCCCCC
Q 011101          425 CILDLPN  431 (493)
Q Consensus       425 ~l~~lp~  431 (493)
                      .+..+..
T Consensus       312 ~~~~l~~  318 (328)
T 4fcg_A          312 LQAQLDQ  318 (328)
T ss_dssp             GSCC---
T ss_pred             HHHHHhh
Confidence            7776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.1e-33  Score=286.05  Aligned_cols=276  Identities=17%  Similarity=0.151  Sum_probs=204.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc-CcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI-PKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ..+++.|+|++|.+++   ..+..+.++++|++|++++|.+.+.+ +..|.++++|++|+|++|.+++..+..|.++++|
T Consensus        29 ~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             CTTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             CCccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence            3568888888888877   55667777777888888777776544 4557777777777777777776667777777777


Q ss_pred             cEEEcccccCCCCCCcc--cccc-ccCEEEccCccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhhh--------
Q 011101          252 TFLDLRFNSFSGPVPAE--IFYL-DLDVLFLNNNKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGRA--------  318 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~--~~~~-~L~~L~L~~n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~l--------  318 (493)
                      ++|+|++|.+++.++..  +... +|++|+|++|.+.+..+.. +..+..+ +|++++|.+.+..+..+..+        
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            77777777776544332  3333 6677777777766655544 5555555 66666666655444433332        


Q ss_pred             --------------------------------------------------------------------------------
Q 011101          319 --------------------------------------------------------------------------------  318 (493)
Q Consensus       319 --------------------------------------------------------------------------------  318 (493)
                                                                                                      
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence                                                                                            


Q ss_pred             ---------hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcC
Q 011101          319 ---------KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ  389 (493)
Q Consensus       319 ---------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  389 (493)
                               .+|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence                     23444555555555556777888999999999999999888889999999999999999998877888999


Q ss_pred             CCCCcEEeeeCCcCCCCC-ccccCCCCCCEEEeeCCcCCCCCCC----CCchhhcccccCCCCCCCC
Q 011101          390 LPKLVNLSLSYNYFTQVG-PECRKLIKRKVLDVRMNCILDLPNQ----RSREECGKFFSESKKCPNE  451 (493)
Q Consensus       390 l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~~~~~c~~~  451 (493)
                      +++|++|+|++|+|+++. ..+..+++|++|++++|+|+++|..    ...++.+.+.+|+..|.+.
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999974 4788999999999999999998864    2345667788888888754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=277.84  Aligned_cols=290  Identities=18%  Similarity=0.148  Sum_probs=231.4

Q ss_pred             CCCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|..|.|...     +.....+++.|+|++|++++   ..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            3566777632     23345689999999999998   667789999999999999999998888899999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI  311 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~  311 (493)
                      +|.+++..+..|.++++|++|+|++|.+.+..+..+... +|++|+|++|.+.+..+..+..+..+ +|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            999987666678899999999999999987767666655 89999999999988777788888877 8899999888776


Q ss_pred             chhhhhhhhhHHHHhccccccCCCcccccCCCC------------------------CcEEEecCCCCCCCCcccccCCC
Q 011101          312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSN------------------------STVFDVGNNRLTGPIPHSFGCLS  367 (493)
Q Consensus       312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~------------------------L~~L~Ls~N~l~~~~p~~l~~l~  367 (493)
                      +..+..+++|+.|++++|.+.+..+..|..+.+                        |++|+|++|.+++.....|..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            677888888888888888877655555555554                        45555555666633334677788


Q ss_pred             CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC----CCchhhcccc
Q 011101          368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ----RSREECGKFF  442 (493)
Q Consensus       368 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~  442 (493)
                      +|++|+|++|.+++..+..+..+++|+.|+|++|+|+++.+ .+..+++|+.|+|++|.|++++..    ...++.+.+.
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            88888888888887666778888889999999999888744 788899999999999999998854    2345567788


Q ss_pred             cCCCCCCCC
Q 011101          443 SESKKCPNE  451 (493)
Q Consensus       443 ~~~~~c~~~  451 (493)
                      +|++.|.+.
T Consensus       329 ~N~l~c~c~  337 (477)
T 2id5_A          329 SNPLACDCR  337 (477)
T ss_dssp             SSCEECSGG
T ss_pred             CCCccCccc
Confidence            888888743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=9.3e-32  Score=265.00  Aligned_cols=248  Identities=24%  Similarity=0.335  Sum_probs=226.0

Q ss_pred             CcCcEEEccCCcCCC--ccCcccCCCCCCCEEECcC-CCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCE
Q 011101          201 EDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDV  276 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~  276 (493)
                      .+++.|++++|.+++  .+|..|.++++|++|+|++ |.+++.+|..|.++++|++|+|++|.+++.+|..+... +|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999999  8999999999999999995 99999999999999999999999999998999888776 9999


Q ss_pred             EEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhh-hhHHHHhccccccCCCcccccCCCCCcEEEecCCC
Q 011101          277 LFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAK-YLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR  354 (493)
Q Consensus       277 L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  354 (493)
                      |+|++|.+.+.+|..+..+..+ +|++++|.+++.+|..+..+. +|++|++++|.+++.++..+..+. |++|+|++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999999999999999999888 999999999999999999998 999999999999999999999987 9999999999


Q ss_pred             CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC-CCccccCCCCCCEEEeeCCcCC-CCCCC
Q 011101          355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ-VGPECRKLIKRKVLDVRMNCIL-DLPNQ  432 (493)
Q Consensus       355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~  432 (493)
                      +++..+..|..+++|++|+|++|++++.++. +..+++|++|+|++|+|++ ++..+..+++|++|+|++|.|+ .+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9999999999999999999999999976665 7889999999999999996 4557899999999999999998 46654


Q ss_pred             --CCchhhcccccCCCCCCC
Q 011101          433 --RSREECGKFFSESKKCPN  450 (493)
Q Consensus       433 --~~~~~~~~~~~~~~~c~~  450 (493)
                        ...+....+.+|+..|..
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccChHHhcCCCCccCC
Confidence              334555667788877753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4.8e-31  Score=267.86  Aligned_cols=271  Identities=18%  Similarity=0.137  Sum_probs=201.1

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ...+++.|+++++.++.   .....+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|
T Consensus        43 ~l~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            34778899999999887   334457889999999999999987777789999999999999999988878888999999


Q ss_pred             cEEEcccccCCCCCCccc-ccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhh----------
Q 011101          252 TFLDLRFNSFSGPVPAEI-FYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRA----------  318 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~-~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l----------  318 (493)
                      ++|+|++|.++ .++..+ ... +|++|++++|.+.+..+..+..+..+ +|++++|.+++.-...+.++          
T Consensus       120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence            99999999998 566554 433 89999999999987777778888777 88888888875422222211          


Q ss_pred             ---------------------------hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCE
Q 011101          319 ---------------------------KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQY  371 (493)
Q Consensus       319 ---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  371 (493)
                                                 .+|++|++++|.+++.  ..+..+++|++|+|++|.+++..+..|..+++|++
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                                       1244444444444432  34666777888888888877666777777788888


Q ss_pred             EEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC-CCCchhhcccccCCCCCC
Q 011101          372 LNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN-QRSREECGKFFSESKKCP  449 (493)
Q Consensus       372 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~~~~~c~  449 (493)
                      |+|++|++++ ++..+..+++|++|+|++|++++++..+..+++|+.|++++|.|+.++- ....+..+.+.+|++.|.
T Consensus       277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             EECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             EECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence            8888887773 4555666778888888888888777677777888888888888877752 233444556666666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3.9e-31  Score=273.78  Aligned_cols=256  Identities=15%  Similarity=0.149  Sum_probs=214.6

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcc--cCCCCCCCEEECcCCCCCCCCccc-ccCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKM--TSKLKFLYELDVSNNKLFGGFPME-VVNI  248 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l  248 (493)
                      ...+++.|+|++|.+++   ..+..++.+++|++|++++|++++.++..  |.++++|++|+|++|.+++..+.. +.++
T Consensus        77 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TCTTCCEEECTTCTTCE---ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             ccccCCEEeCCCCccCc---cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            45678888888888887   66778888888888888888888755444  888888888888888888776765 7888


Q ss_pred             CCCcEEEcccccCCCCCCccccc-----------------------------------cccCEEEccCccCCCCcccccc
Q 011101          249 KNLTFLDLRFNSFSGPVPAEIFY-----------------------------------LDLDVLFLNNNKFSQNLPENIG  293 (493)
Q Consensus       249 ~~L~~L~Ls~n~l~~~~p~~~~~-----------------------------------~~L~~L~L~~n~l~~~~p~~~~  293 (493)
                      ++|++|+|++|.+.+..+..+..                                   .+|++|++++|.+.+..+..+.
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  233 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF  233 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred             CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence            88888888888888766654432                                   2577888888877655444332


Q ss_pred             cc---------------------------------------ccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          294 ST---------------------------------------GAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       294 ~~---------------------------------------~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      ..                                       ..+ +|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence            21                                       233 78888899888889999999999999999999998


Q ss_pred             CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccC
Q 011101          334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRK  412 (493)
Q Consensus       334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~  412 (493)
                      ..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+|++++. .+..
T Consensus       314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence            888899999999999999999998888999999999999999999998889999999999999999999999876 4689


Q ss_pred             CCCCCEEEeeCCcCCCCC
Q 011101          413 LIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       413 l~~L~~L~L~~N~l~~lp  430 (493)
                      +++|+.|++++|.|+.-.
T Consensus       394 l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CTTCCEEECCSSCBCCCT
T ss_pred             CCcccEEEccCCCcccCC
Confidence            999999999999998743

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8.2e-31  Score=280.85  Aligned_cols=298  Identities=18%  Similarity=0.143  Sum_probs=217.2

Q ss_pred             CCCCCCCCCCCCCC-C---CCceeeccC------------CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEc
Q 011101          145 QGIANTWMGPDVCN-K---YKGFVCDVR------------PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHA  208 (493)
Q Consensus       145 ~~~~~~W~~~~~C~-~---w~gv~c~~~------------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L  208 (493)
                      +..++.|.....|+ .   |.++.|+..            ......+++.++++++.+..   ..+..+..+++|++|+|
T Consensus         6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L   82 (597)
T 3oja_B            6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNL   82 (597)
T ss_dssp             -----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE---ECTHHHHHCCCCSEEEC
T ss_pred             cccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC---cCHHHHccCCCCcEEEC
Confidence            34467888555453 2   555544411            01234677888999988887   44455788899999999


Q ss_pred             cCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc-cccc-ccCEEEccCccCCC
Q 011101          209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE-IFYL-DLDVLFLNNNKFSQ  286 (493)
Q Consensus       209 ~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~  286 (493)
                      ++|.+++..+..|+.+++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|.. +... +|++|+|++|.+.+
T Consensus        83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence            999998877778889999999999999998877788888999999999999988 44444 3444 89999999999988


Q ss_pred             Cccccccccccc-hhhcccCcCCCCCchhhhhh-------------------------------------hhhHHHHhcc
Q 011101          287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRA-------------------------------------KYLLEVLFLN  328 (493)
Q Consensus       287 ~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l-------------------------------------~~L~~L~L~~  328 (493)
                      ..+..++.+..+ +|++++|.+.+.....+.++                                     .+|+.|++++
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~  241 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH  241 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred             CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence            878788888877 88888888875432222221                                     1244445555


Q ss_pred             ccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc
Q 011101          329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP  408 (493)
Q Consensus       329 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~  408 (493)
                      |.+++  +..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++ ++..+..+++|+.|+|++|.|++++.
T Consensus       242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~  318 (597)
T 3oja_B          242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER  318 (597)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCc
Confidence            55553  2457778888888888888887778888888888888888888874 56666778888888888888888877


Q ss_pred             cccCCCCCCEEEeeCCcCCCCCC-CCCchhhcccccCCCCCC
Q 011101          409 ECRKLIKRKVLDVRMNCILDLPN-QRSREECGKFFSESKKCP  449 (493)
Q Consensus       409 ~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~~~~~c~  449 (493)
                      .+..+++|+.|+|++|.|++++- .+..+..+.+.+|++.|.
T Consensus       319 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          319 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             GHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             ccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence            78888888888888888888752 234445556666666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-29  Score=252.03  Aligned_cols=247  Identities=18%  Similarity=0.166  Sum_probs=191.4

Q ss_pred             ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101          175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL  254 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  254 (493)
                      +++.+++++++++.    +|..+.  ++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus        32 ~l~~l~~~~~~l~~----lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEK----VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCS----CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCccc----cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            46677777777776    454332  577888888888887666678888888888888888877777788888888888


Q ss_pred             EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCC--CCchhhhhhhhhHHHHhccccc
Q 011101          255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTG--PIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +|++|.++ .+|..+. .+|++|++++|.+.+..+..+..+..+ +|++++|.+..  ..+..+..+++|++|++++|.+
T Consensus       106 ~Ls~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             ECCSSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            88888887 5665554 578888888888877666667777777 78888887753  5667788888888888888888


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcccc
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR  411 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~  411 (493)
                      +. ++..+.  ++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+|+.++..+.
T Consensus       184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~  260 (330)
T 1xku_A          184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA  260 (330)
T ss_dssp             CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT
T ss_pred             cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhc
Confidence            74 554443  788888888888887777788888888888888888887666678888888888888888888877788


Q ss_pred             CCCCCCEEEeeCCcCCCCCCC
Q 011101          412 KLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       412 ~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      .+++|++|++++|.|++++..
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTT
T ss_pred             cCCCcCEEECCCCcCCccChh
Confidence            888888888888888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1e-29  Score=252.37  Aligned_cols=223  Identities=18%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccC
Q 011101          202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNN  281 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~  281 (493)
                      +|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|..+. .+|++|++++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~  132 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIHD  132 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECCS
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECCC
Confidence            4455555555554443444555555555555555554444444555555555555555544 3333333 3455555555


Q ss_pred             ccCCCCccccccccccc-hhhcccCcCC--CCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101          282 NKFSQNLPENIGSTGAL-YVTFANNEFT--GPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP  358 (493)
Q Consensus       282 n~l~~~~p~~~~~~~~l-~L~l~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  358 (493)
                      |.+.+..+..+..+..+ +|++++|.+.  +..+..+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+++.
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAI  208 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCC
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCcc
Confidence            55543333334444444 4555555443  1333444444 45555555555542 333222  4455555555555544


Q ss_pred             CcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101          359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       359 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      .+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+|+.++..+..+++|+.|++++|.|++++
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC
Confidence            444455555555555555555544444445555555555555555544444455555555555555555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.9e-30  Score=279.87  Aligned_cols=255  Identities=18%  Similarity=0.236  Sum_probs=190.8

Q ss_pred             CCccceEEEEcCCCCcCCCCCc-----------------cchhhh--CCCcCcEEEccCCcCCCccCcccCCCCCCCEEE
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFS-----------------LSDFLE--KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELD  231 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~-----------------~~~~l~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~  231 (493)
                      ....+++.|+|++|.+++   .                 +|..++  ++++|++|++++|.+.+.+|..|+++++|++|+
T Consensus       203 ~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVA---ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGCTTCCEEEEESCCCCG---GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             hcccCCCEEECcCCcccc---ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            456789999999999888   5                 888888  999999999999999999999999999999999


Q ss_pred             CcCCC-CCC-CCcccccCC------CCCcEEEcccccCCCCCCc--ccccc-ccCEEEccCccCCCCccccccccccc-h
Q 011101          232 VSNNK-LFG-GFPMEVVNI------KNLTFLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-Y  299 (493)
Q Consensus       232 Ls~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~  299 (493)
                      |++|. +++ .+|..+..+      ++|++|+|++|.++ .+|.  .+... +|++|++++|.+.|.+| .++.+..+ +
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            99998 877 788877776      88999999999888 7887  66665 88888888888887788 77777776 7


Q ss_pred             hhcccCcCCCCCchhhhhhhh-hHHHHhccccccCCCcccccCCC--CCcEEEecCCCCCCCCccccc-------CCCCC
Q 011101          300 VTFANNEFTGPIPSSIGRAKY-LLEVLFLNNFFTGCLPYEIGFLS--NSTVFDVGNNRLTGPIPHSFG-------CLSSM  369 (493)
Q Consensus       300 L~l~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L  369 (493)
                      |++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..+.  +|++|++++|.+++.+|..|.       .+.+|
T Consensus       358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             EECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence            888888877 77777888877 888888888877 6676666544  777777777777776666666       55667


Q ss_pred             CEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccC--------CCCCCEEEeeCCcCCCCCCC
Q 011101          370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRK--------LIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       370 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--------l~~L~~L~L~~N~l~~lp~~  432 (493)
                      ++|+|++|++++.....+..+++|++|+|++|+|+.++..+..        +++|+.|+|++|.|+.+|..
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  506 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD  506 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred             CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence            7777777777633333344466666666666666655443211        11566666666666655543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=7.8e-30  Score=270.34  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=120.7

Q ss_pred             CCCCCCceeeccC-------CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCC
Q 011101          156 VCNKYKGFVCDVR-------PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLY  228 (493)
Q Consensus       156 ~C~~w~gv~c~~~-------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~  228 (493)
                      .| .|.|+ |+..       +.....+++.|++++|++++   ..+..+..+++|++|++++|++++..+..|+++++|+
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            36 77777 6532       22334689999999999998   6677899999999999999999988778899999999


Q ss_pred             EEECcCCCCCCCCcccccCCCCCcEEEcccccCCC-CCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-hhhccc
Q 011101          229 ELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSG-PVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFAN  304 (493)
Q Consensus       229 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~  304 (493)
                      +|+|++|.+++..+..|.++++|++|+|++|.+++ ..+..+... +|++|++++|.+.+.++ ..+..+..+ +|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999999988777779999999999999999885 244555544 88888888887544554 466666666 777777


Q ss_pred             CcCCCCCchhhhh
Q 011101          305 NEFTGPIPSSIGR  317 (493)
Q Consensus       305 n~l~~~~p~~l~~  317 (493)
                      |.+.+..+..+..
T Consensus       158 n~l~~~~~~~l~~  170 (549)
T 2z81_A          158 LSLRNYQSQSLKS  170 (549)
T ss_dssp             TTCCEECTTTTTT
T ss_pred             CcccccChhhhhc
Confidence            7776655555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=267.31  Aligned_cols=150  Identities=16%  Similarity=0.170  Sum_probs=96.1

Q ss_pred             hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC--CCcccccCCCCCcEEEecCCCCCCCCccc-ccCCCCCCEEEcc
Q 011101          299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG--CLPYEIGFLSNSTVFDVGNNRLTGPIPHS-FGCLSSMQYLNLA  375 (493)
Q Consensus       299 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls  375 (493)
                      +|++++|.+.+.++..++.+++|++|++++|.+++  .++..+..+++|++|+|++|.+++.+|.. +..+++|++|+|+
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            45555555555455555555555555555555553  23344555555666666666655434432 4555566666666


Q ss_pred             cCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC-CC---chhhcccccCCCCCCC
Q 011101          376 MNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ-RS---REECGKFFSESKKCPN  450 (493)
Q Consensus       376 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~---~~~~~~~~~~~~~c~~  450 (493)
                      +|++++.++..+.  ++|+.|+|++|+|+.++..+..+++|++|++++|+|+.+|.. +.   .+..+.+.+|+..|.+
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            6666554444332  678888888888888877777899999999999999999875 33   3455667788888864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=1.6e-29  Score=271.26  Aligned_cols=272  Identities=15%  Similarity=0.120  Sum_probs=167.8

Q ss_pred             ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101          175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL  254 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  254 (493)
                      +++.|++++|.+++   ..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus       255 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          255 SVESINLQKHYFFN---ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             EEEEEECTTCCCSS---CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             ceeEEEeecCccCc---cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence            45556666655555   33444555555555555555555 344555555555555555555554444445555555555


Q ss_pred             EcccccCCCCCCc---------------------------ccccc-ccCEEEccCccCCCCccccccccccc-hhhcccC
Q 011101          255 DLRFNSFSGPVPA---------------------------EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANN  305 (493)
Q Consensus       255 ~Ls~n~l~~~~p~---------------------------~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n  305 (493)
                      ++++|.+.+.++.                           .+... +|++|++++|.+.+..+..+..+..+ +|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            5555544433333                           22222 55555555555555555555555555 6666666


Q ss_pred             cCCCCCch-hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC---CcccccCCCCCCEEEcccCCCCC
Q 011101          306 EFTGPIPS-SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP---IPHSFGCLSSMQYLNLAMNQFYG  381 (493)
Q Consensus       306 ~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~  381 (493)
                      .+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+..+++|++|+|++|++++
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            66554433 356666666777777776666666667777777777777777642   23456677777777777777776


Q ss_pred             CcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC----CCchhhcccccCCCCCCCC
Q 011101          382 PVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ----RSREECGKFFSESKKCPNE  451 (493)
Q Consensus       382 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~~~~~c~~~  451 (493)
                      ..+..+..+++|+.|+|++|++++.++ .+..+++| .|++++|.|++++..    ...++...+.+|++.|.+.
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            667777778888888888888877644 67777888 888888888877643    2334556788888888543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.3e-28  Score=244.12  Aligned_cols=262  Identities=18%  Similarity=0.166  Sum_probs=223.9

Q ss_pred             CCCCCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEE
Q 011101          156 VCNKYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYEL  230 (493)
Q Consensus       156 ~C~~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L  230 (493)
                      .| .|..+.|....     .....+++.|++++|++++   ..+..+..+++|++|++++|.+++..+..|.++++|++|
T Consensus        30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cC-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            34 78888886332     2334689999999999998   556689999999999999999998889999999999999


Q ss_pred             ECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC--Cccccccccccc-hhhcccCc
Q 011101          231 DVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ--NLPENIGSTGAL-YVTFANNE  306 (493)
Q Consensus       231 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~--~~p~~~~~~~~l-~L~l~~n~  306 (493)
                      ++++|.++ .+|..+.  ++|++|++++|.+++..+..+... +|++|++++|.+..  ..+..+..+..+ +|++++|.
T Consensus       106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            99999997 5565544  799999999999996555555555 99999999999964  667788888887 99999999


Q ss_pred             CCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchh
Q 011101          307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI  386 (493)
Q Consensus       307 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  386 (493)
                      +. .+|..+.  ++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..
T Consensus       183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  258 (330)
T 1xku_A          183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  258 (330)
T ss_dssp             CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence            98 4565544  78999999999999888889999999999999999999877778999999999999999998 78888


Q ss_pred             hcCCCCCcEEeeeCCcCCCCCc-ccc------CCCCCCEEEeeCCcCCC
Q 011101          387 VCQLPKLVNLSLSYNYFTQVGP-ECR------KLIKRKVLDVRMNCILD  428 (493)
Q Consensus       387 l~~l~~L~~L~Ls~N~l~~~~~-~~~------~l~~L~~L~L~~N~l~~  428 (493)
                      +..+++|++|++++|+|++++. .|.      ....|+.|++++|.+..
T Consensus       259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            9999999999999999999865 332      34789999999999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=253.50  Aligned_cols=272  Identities=17%  Similarity=0.154  Sum_probs=224.5

Q ss_pred             CCCCCCCCCceeeccC-------CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCC
Q 011101          153 GPDVCNKYKGFVCDVR-------PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLK  225 (493)
Q Consensus       153 ~~~~C~~w~gv~c~~~-------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~  225 (493)
                      ....| .|.++ |+..       +.....+++.|++++|++++   ..+..+..+++|++|++++|.+++..+..|.+++
T Consensus        26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            44566 88887 6522       22334689999999999998   5555899999999999999999988788899999


Q ss_pred             CCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCc--ccccc-ccCEEEccCcc-CCCCccccccccccc-hh
Q 011101          226 FLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNK-FSQNLPENIGSTGAL-YV  300 (493)
Q Consensus       226 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~-l~~~~p~~~~~~~~l-~L  300 (493)
                      +|++|+|++|.+++..+..|.++++|++|+|++|.++ .++.  .+... +|++|++++|. +.+..+..+..+..+ +|
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            9999999999998666666899999999999999998 5555  44444 99999999995 665556788888888 99


Q ss_pred             hcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCccccc---CCCCCCEEEcccC
Q 011101          301 TFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFG---CLSSMQYLNLAMN  377 (493)
Q Consensus       301 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N  377 (493)
                      ++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+.   ....++.++|+++
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~  259 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV  259 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence            9999999988899999999999999999998743333455689999999999999975544433   4567889999999


Q ss_pred             CCCC----CcchhhcCCCCCcEEeeeCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCC
Q 011101          378 QFYG----PVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       378 ~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      .+++    .+|..+..+++|+.|+|++|+|+.++.. +..+++|++|++++|.+..-.
T Consensus       260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            8875    3677889999999999999999998876 589999999999999988743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=4.5e-29  Score=267.75  Aligned_cols=279  Identities=16%  Similarity=0.140  Sum_probs=205.8

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCC-CCcccccCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG-GFPMEVVNIK  249 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~  249 (493)
                      ....+++.|+|++|.+++   ..|..|+.+++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.+++
T Consensus        77 ~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           77 HGLHHLSNLILTGNPIQS---FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTCTTCCEEECTTCCCCC---CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             hchhhcCEeECCCCcccc---cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            356789999999999888   668889999999999999999987776788999999999999999875 5688899999


Q ss_pred             CCcEEEcccccCCCCCCcccccc---------------------------------------------------------
Q 011101          250 NLTFLDLRFNSFSGPVPAEIFYL---------------------------------------------------------  272 (493)
Q Consensus       250 ~L~~L~Ls~n~l~~~~p~~~~~~---------------------------------------------------------  272 (493)
                      +|++|+|++|.+++..+..+...                                                         
T Consensus       154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  233 (606)
T 3vq2_A          154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV  233 (606)
T ss_dssp             TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred             CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence            99999999998775433211100                                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 011101          273 --------------------------------------------------------------------------------  272 (493)
Q Consensus       273 --------------------------------------------------------------------------------  272 (493)
                                                                                                      
T Consensus       234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~  313 (606)
T 3vq2_A          234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS  313 (606)
T ss_dssp             EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred             ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence                                                                                            


Q ss_pred             -------------------------------------ccCEEEccCccCCCC--cccc----------------------
Q 011101          273 -------------------------------------DLDVLFLNNNKFSQN--LPEN----------------------  291 (493)
Q Consensus       273 -------------------------------------~L~~L~L~~n~l~~~--~p~~----------------------  291 (493)
                                                           +|++|++++|.+.+.  ++..                      
T Consensus       314 l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  393 (606)
T 3vq2_A          314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA  393 (606)
T ss_dssp             EESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC
T ss_pred             cccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh
Confidence                                                 122222222222211  0111                      


Q ss_pred             -ccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC-CCcccccCCC
Q 011101          292 -IGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCLS  367 (493)
Q Consensus       292 -~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~  367 (493)
                       +..+..+ +|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..|..++
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence             1122222 34444444444444 455666667777777777776677777788888888888888876 3677888889


Q ss_pred             CCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCCCCCCCCCc----hhhcccc
Q 011101          368 SMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCILDLPNQRSR----EECGKFF  442 (493)
Q Consensus       368 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~~~~----~~~~~~~  442 (493)
                      +|++|+|++|++++..+..+..+++|++|+|++|+++++ +..+..+++|+.|++++|+|+.+|..+..    +..+.+.
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~  553 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT  553 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence            999999999999888888899999999999999999997 44788999999999999999999876432    4567788


Q ss_pred             cCCCCCCCCC
Q 011101          443 SESKKCPNER  452 (493)
Q Consensus       443 ~~~~~c~~~~  452 (493)
                      +|++.|.+..
T Consensus       554 ~N~~~c~c~~  563 (606)
T 3vq2_A          554 NNSVACICEH  563 (606)
T ss_dssp             SCCCCCSSTT
T ss_pred             CCCcccCCcc
Confidence            9999997654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=4.4e-29  Score=265.55  Aligned_cols=150  Identities=20%  Similarity=0.236  Sum_probs=90.1

Q ss_pred             hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC--CcccccCCCCCcEEEecCCCCCCCCcc-cccCCCCCCEEEcc
Q 011101          299 YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC--LPYEIGFLSNSTVFDVGNNRLTGPIPH-SFGCLSSMQYLNLA  375 (493)
Q Consensus       299 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls  375 (493)
                      +|++++|.+.+.++..+..+++|++|++++|.+++.  ++..+..+++|++|++++|.+++.++. .+..+++|++|+|+
T Consensus       357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred             EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence            344444444444444444444444444444444431  123344445555555555555442332 24445555555555


Q ss_pred             cCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC-CC---chhhcccccCCCCCCC
Q 011101          376 MNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ-RS---REECGKFFSESKKCPN  450 (493)
Q Consensus       376 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~---~~~~~~~~~~~~~c~~  450 (493)
                      +|++++.++..+.  ++|++|+|++|+|+.++..+..+++|++|++++|+|+++|.. +.   .+..+.+.+|++.|.+
T Consensus       437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            5555444333322  588888888888888887777999999999999999999876 43   3445678889999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-28  Score=244.01  Aligned_cols=259  Identities=19%  Similarity=0.167  Sum_probs=221.4

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|..+.|....     .....+++.|++++|.+++   ..+..+..+++|++|++++|.+++..+..|+++++|++|+|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            78888886332     2334689999999999998   567789999999999999999998888999999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC--CCccccccccccchhhcccCcCCCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS--QNLPENIGSTGALYVTFANNEFTGP  310 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~--~~~p~~~~~~~~l~L~l~~n~l~~~  310 (493)
                      +|.++ .+|..+.  ++|++|++++|.+.+..+..+... +|++|++++|.+.  +..+..+..+...+|++++|.+++ 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-
Confidence            99997 5665554  899999999999995544445544 9999999999996  366777777744499999999985 


Q ss_pred             CchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101          311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       311 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                      +|..+.  ++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            665554  68999999999999888889999999999999999999877778999999999999999998 788889999


Q ss_pred             CCCcEEeeeCCcCCCCCc-cccC------CCCCCEEEeeCCcCC
Q 011101          391 PKLVNLSLSYNYFTQVGP-ECRK------LIKRKVLDVRMNCIL  427 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~~~~-~~~~------l~~L~~L~L~~N~l~  427 (493)
                      ++|+.|++++|+|++++. .+..      ..+|+.|++++|.+.
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            999999999999999865 3332      467999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.6e-29  Score=260.78  Aligned_cols=253  Identities=15%  Similarity=0.055  Sum_probs=179.1

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+|+.|+|++|.++.   ..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|+
T Consensus        79 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKL---IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             CTTCCEEECCSSCCCS---CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             CccCCEEECCCCcCCc---cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            3455555555555555   2233355555555555555555555555555555566666665555555555555566666


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF  330 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  330 (493)
                      +|+|++|.+++..+..+... +|+.|+|++|.+.+..+..+..+..+ +|++++|.+.+.++..+....+|++|++++|.
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            66666666553322223333 56666666666655555555555555 66666666666666555555678888888888


Q ss_pred             ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-c
Q 011101          331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-E  409 (493)
Q Consensus       331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~  409 (493)
                      +++.....|..+++|++|+|++|.+++..+..|..+.+|++|+|++|++++..+..+..+++|+.|+|++|+|++++. .
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            885544678899999999999999998778889999999999999999998889999999999999999999999876 5


Q ss_pred             ccCCCCCCEEEeeCCcCCC
Q 011101          410 CRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       410 ~~~l~~L~~L~L~~N~l~~  428 (493)
                      |..+++|+.|+|++|.+..
T Consensus       316 ~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             BSCGGGCCEEECCSSCEEC
T ss_pred             cCCCcccCEEEccCCCccC
Confidence            6889999999999998874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=2e-28  Score=263.29  Aligned_cols=287  Identities=18%  Similarity=0.139  Sum_probs=202.3

Q ss_pred             ceeecc-----CCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCC
Q 011101          162 GFVCDV-----RPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK  236 (493)
Q Consensus       162 gv~c~~-----~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~  236 (493)
                      .|.|..     .+.....+++.|||++|+|++   ..+.+|..+++|++|+|++|+|++..+.+|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            356653     233445689999999999998   556679999999999999999987777789999999999999999


Q ss_pred             CCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC-Cccccccccccc-hhhcccCcCCCCCch
Q 011101          237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPS  313 (493)
Q Consensus       237 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~-~~p~~~~~~~~l-~L~l~~n~l~~~~p~  313 (493)
                      |++..+..|.++++|++|+|++|++++..+..+... +|++|+|++|.+.+ ..+..++.+..+ +|++++|.+.+..+.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            987667778888889999988888885444445444 77777777777754 245555555544 555555554433322


Q ss_pred             hhhhhh--------------------------------------------------------------------------
Q 011101          314 SIGRAK--------------------------------------------------------------------------  319 (493)
Q Consensus       314 ~l~~l~--------------------------------------------------------------------------  319 (493)
                      .+..+.                                                                          
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  271 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  271 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence            222111                                                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 011101          320 --------------------------------------------------------------------------------  319 (493)
Q Consensus       320 --------------------------------------------------------------------------------  319 (493)
                                                                                                      
T Consensus       272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L  351 (635)
T 4g8a_A          272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL  351 (635)
T ss_dssp             TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred             ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence                                                                                            


Q ss_pred             --------------------hhHHHHhccccc------------------------------------------------
Q 011101          320 --------------------YLLEVLFLNNFF------------------------------------------------  331 (493)
Q Consensus       320 --------------------~L~~L~L~~n~l------------------------------------------------  331 (493)
                                          +|+.|++++|.+                                                
T Consensus       352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~  431 (635)
T 4g8a_A          352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN  431 (635)
T ss_dssp             CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred             hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence                                111111111111                                                


Q ss_pred             --------------------------cCCCcccccCCCCCcEEEecCCCCC-CCCcccccCCCCCCEEEcccCCCCCCcc
Q 011101          332 --------------------------TGCLPYEIGFLSNSTVFDVGNNRLT-GPIPHSFGCLSSMQYLNLAMNQFYGPVP  384 (493)
Q Consensus       332 --------------------------~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  384 (493)
                                                .+..+..+..+++|++|+|++|.+. +..|..|..+++|++|+|++|+|++..|
T Consensus       432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~  511 (635)
T 4g8a_A          432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  511 (635)
T ss_dssp             EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence                                      1111111222334555555555432 2356678888999999999999998889


Q ss_pred             hhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC-C----CchhhcccccCCCCCCCC
Q 011101          385 EIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ-R----SREECGKFFSESKKCPNE  451 (493)
Q Consensus       385 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~-~----~~~~~~~~~~~~~~c~~~  451 (493)
                      ..|.++++|++|+|++|+|+++++ .+..+++|++|+|++|+|++++.. +    ..++.+.+.+|++.|.+.
T Consensus       512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999999999999866 688999999999999999998643 3    345667889999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=271.87  Aligned_cols=110  Identities=20%  Similarity=0.229  Sum_probs=70.7

Q ss_pred             hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                      |++|++++|.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            44444444444444445555666666666666666666666666667777777777777666666666777777777777


Q ss_pred             CcCCCCCc-cccCCCCCCEEEeeCCcCCCCC
Q 011101          401 NYFTQVGP-ECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       401 N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      |+|+++++ .+..+++|+.|++++|.|++++
T Consensus       348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             CCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             CCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            77766644 4566777777777777666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=8.5e-29  Score=251.28  Aligned_cols=246  Identities=17%  Similarity=0.086  Sum_probs=187.2

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|++++|.+++   ..+..+..+++|++|++++|.+++..+..|+++++|++|+|++|.++...+..|.++++|++
T Consensus        69 ~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence            567777777777766   44456777777777777777777666666777777777777777776444444567777777


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCcccccccc-------------------------------------
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGST-------------------------------------  295 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~-------------------------------------  295 (493)
                      |+|++|.+.+..+..+... +|++|++++|.+.+.....+..+                                     
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~  225 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  225 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence            7777777765545445443 67777777776654322211111                                     


Q ss_pred             ccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEc
Q 011101          296 GAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNL  374 (493)
Q Consensus       296 ~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  374 (493)
                      ..+ +|++++|.+++.  ..+..+++|++|++++|.+.+..+..|..+++|++|+|++|+++ .++..+..+++|++|+|
T Consensus       226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEEC
T ss_pred             ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEEC
Confidence            123 677777877754  57889999999999999999888899999999999999999999 46777788999999999


Q ss_pred             ccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       375 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ++|+++ .++..+..+++|+.|+|++|.|+.++  +..+++|+.|++++|.+..
T Consensus       303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence            999998 56777888999999999999999884  6789999999999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.3e-28  Score=244.04  Aligned_cols=221  Identities=20%  Similarity=0.189  Sum_probs=193.7

Q ss_pred             CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEE
Q 011101          199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVL  277 (493)
Q Consensus       199 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L  277 (493)
                      ...+++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+... +|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4578999999999998 67888999999999999999997 88999999999999999999999 888887776 99999


Q ss_pred             EccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101          278 FLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG  357 (493)
Q Consensus       278 ~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  357 (493)
                      +|++|++.+.+|..++..              .+...+..+++|++|++++|.++ .+|..+..+++|++|+|++|.++ 
T Consensus       156 ~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred             ECCCCCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence            999999888888766442              12234677889999999999999 78889999999999999999999 


Q ss_pred             CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCC-CCCCCCCc
Q 011101          358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCIL-DLPNQRSR  435 (493)
Q Consensus       358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~-~lp~~~~~  435 (493)
                      .++..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+. +..+..+++|+.|+|++|.+. .+|..+..
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            5777899999999999999999999999999999999999999988775 557899999999999998655 57876655


Q ss_pred             hhh
Q 011101          436 EEC  438 (493)
Q Consensus       436 ~~~  438 (493)
                      +..
T Consensus       300 L~~  302 (328)
T 4fcg_A          300 LPA  302 (328)
T ss_dssp             SCT
T ss_pred             ccC
Confidence            443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.1e-28  Score=260.23  Aligned_cols=266  Identities=17%  Similarity=0.136  Sum_probs=181.9

Q ss_pred             CCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC
Q 011101          160 YKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN  234 (493)
Q Consensus       160 w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~  234 (493)
                      +..+.|...     +.....+++.|++++|.+++   ..+..|.++++|++|++++|.+++..+..|+++++|++|+|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            344666532     23345678999999999988   6677888999999999999999887788889999999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCc
Q 011101          235 NKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP  312 (493)
Q Consensus       235 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p  312 (493)
                      |.+++..+..|.++++|++|+|++|.+++..+..+... +|++|++++|.+.+.....+..+..+ +|++++|.+.+..+
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            99888888888888888888888888885445555544 78888888888876432333335555 77777777776666


Q ss_pred             hhhhhhhhhH--HHHhccccccCCC-------------------------------------------------------
Q 011101          313 SSIGRAKYLL--EVLFLNNFFTGCL-------------------------------------------------------  335 (493)
Q Consensus       313 ~~l~~l~~L~--~L~L~~n~l~~~~-------------------------------------------------------  335 (493)
                      ..++.+.+|+  +|++++|.+.+..                                                       
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence            6666666666  5555665554433                                                       


Q ss_pred             --------------------cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcE
Q 011101          336 --------------------PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVN  395 (493)
Q Consensus       336 --------------------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  395 (493)
                                          +..|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence                                333455566666666666666 55556666666666666666666555555666666666


Q ss_pred             EeeeCCcCCC-CCc-cccCCCCCCEEEeeCCcCCCC
Q 011101          396 LSLSYNYFTQ-VGP-ECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       396 L~Ls~N~l~~-~~~-~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      |++++|.+.+ ++. .+..+++|++|++++|.++++
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence            6666666653 222 355666666666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.3e-28  Score=263.79  Aligned_cols=266  Identities=15%  Similarity=0.048  Sum_probs=169.8

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+|+.|+|++|.+++   ..+..|+.+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++
T Consensus        99 ~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B           99 HTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             TTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCCC---CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence            445555555555544   33334445555555555555554333333445555555555555554444444555555555


Q ss_pred             EEcccccCCCCCCccccccccCE-------------------EEccCccCCCCccccccccccc-hhhcccCcCCCCCch
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDV-------------------LFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPS  313 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~-------------------L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~  313 (493)
                      |+|++|.+++.....  ..+|+.                   |++++|.+... +..+  ...+ .|++++|.+++.  .
T Consensus       176 L~L~~N~l~~~~~~~--l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~  248 (597)
T 3oja_B          176 LQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--A  248 (597)
T ss_dssp             EECTTSCCSBCCGGG--CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--G
T ss_pred             EECcCCCCCCcChhh--hhhhhhhhcccCccccccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--h
Confidence            555555544221100  012222                   22222222211 1000  0123 778888888763  6


Q ss_pred             hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCC
Q 011101          314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL  393 (493)
Q Consensus       314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  393 (493)
                      .+..+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++ ++..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence            78999999999999999999889999999999999999999995 6777788999999999999999 678888899999


Q ss_pred             cEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC--CCCCCchhhcccccCCCCCCCCCC
Q 011101          394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL--PNQRSREECGKFFSESKKCPNERS  453 (493)
Q Consensus       394 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~~~~~~~~~~~~~~~c~~~~~  453 (493)
                      +.|+|++|.|++++  +..+++|+.|++++|.+..-  ...+..+.-..+..+...|.....
T Consensus       327 ~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  386 (597)
T 3oja_B          327 ENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ  386 (597)
T ss_dssp             SEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTTCE
T ss_pred             CEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcchh
Confidence            99999999999884  67889999999999988641  111222222234455666665433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=7e-28  Score=253.72  Aligned_cols=88  Identities=25%  Similarity=0.295  Sum_probs=56.1

Q ss_pred             cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC--CcchhhcCCCCCcEEeeeCCcCCC-CCc-cccCCCC
Q 011101          340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG--PVPEIVCQLPKLVNLSLSYNYFTQ-VGP-ECRKLIK  415 (493)
Q Consensus       340 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~  415 (493)
                      ..+++|++|++++|.+++.++..+..+++|++|+|++|++++  .+|..+..+++|++|++++|++++ ++. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            455667777777777776666667777777777777777764  344556667777777777777766 443 2455555


Q ss_pred             CCEEEeeCCcCC
Q 011101          416 RKVLDVRMNCIL  427 (493)
Q Consensus       416 L~~L~L~~N~l~  427 (493)
                      |++|++++|.|+
T Consensus       401 L~~L~Ls~N~l~  412 (520)
T 2z7x_B          401 LLSLNMSSNILT  412 (520)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECcCCCCC
Confidence            555555555553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=8.9e-28  Score=261.17  Aligned_cols=256  Identities=18%  Similarity=0.150  Sum_probs=154.4

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|+|++|++++   ..+..|.++++|++|++++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             CTTCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence            3567777777777777   4555677777777777777777776677777777777777777777654444677777777


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhh--hhhhhHHHHhcc
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIG--RAKYLLEVLFLN  328 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~--~l~~L~~L~L~~  328 (493)
                      +|+|++|.+++..+..+... +|++|+|++|.+.+..+..++.+..+ +|++++|.+++..+..+.  .+++|++|++++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            77777777765444555444 77777777777776666666666666 677777766665555443  235666666666


Q ss_pred             ccccCCCcccccCC---------------------------CC--------------------------CcEEEecCCCC
Q 011101          329 NFFTGCLPYEIGFL---------------------------SN--------------------------STVFDVGNNRL  355 (493)
Q Consensus       329 n~l~~~~p~~l~~l---------------------------~~--------------------------L~~L~Ls~N~l  355 (493)
                      |.+++..+..+..+                           ++                          |++|+|++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            66665444433322                           23                          44444444444


Q ss_pred             CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC------CCc----cccCCCCCCEEEeeCCc
Q 011101          356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ------VGP----ECRKLIKRKVLDVRMNC  425 (493)
Q Consensus       356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~------~~~----~~~~l~~L~~L~L~~N~  425 (493)
                      ++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|...+      ++.    .+..+++|++|++++|.
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            44444444444555555555555444444444444444444444443221      111    34556667777777777


Q ss_pred             CCCCCC
Q 011101          426 ILDLPN  431 (493)
Q Consensus       426 l~~lp~  431 (493)
                      |++++.
T Consensus       341 l~~~~~  346 (680)
T 1ziw_A          341 IPGIKS  346 (680)
T ss_dssp             BCCCCT
T ss_pred             cCCCCh
Confidence            766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.7e-28  Score=240.57  Aligned_cols=228  Identities=22%  Similarity=0.210  Sum_probs=157.9

Q ss_pred             CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCC--CcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEE
Q 011101          201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG--FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVL  277 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L  277 (493)
                      ++|++|++++|+++...+..|.++++|++|+|++|.++..  .+..+..+++|++|+|++|.+. .++..+... +|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            3555555555555533333345555555555555555421  2344445555555555555555 344333333 55555


Q ss_pred             EccCccCCCCcc-ccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC-CCcccccCCCCCcEEEecCCC
Q 011101          278 FLNNNKFSQNLP-ENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG-CLPYEIGFLSNSTVFDVGNNR  354 (493)
Q Consensus       278 ~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~  354 (493)
                      ++++|.+.+..+ ..+..+..+ +|++++|.+.+..+..+..+++|++|++++|.+.+ .++..+..+++|++|+|++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            565555554332 344455444 56666666665666677778888888888888876 567888899999999999999


Q ss_pred             CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCC-CCCCEEEeeCCcCCCC
Q 011101          355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL-IKRKVLDVRMNCILDL  429 (493)
Q Consensus       355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l-~~L~~L~L~~N~l~~l  429 (493)
                      +++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+|++..+ .+..+ .+|+.|++++|.|+.-
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            997778889999999999999999987777778889999999999999998654 67777 4899999999988763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=2.8e-27  Score=251.60  Aligned_cols=109  Identities=25%  Similarity=0.221  Sum_probs=88.3

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ...+++.|++++|.+++   ..+..|..+++|++|++++|++++..+..|.++++|++|+|++|.++ .+|..  .+++|
T Consensus        50 ~~~~L~~L~Ls~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L  123 (562)
T 3a79_B           50 LPPRTKALSLSQNSISE---LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASL  123 (562)
T ss_dssp             SCTTCCEEECCSSCCCC---CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTC
T ss_pred             CCCCcCEEECCCCCccc---cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccC
Confidence            34689999999999998   56678999999999999999999887888999999999999999986 45554  78888


Q ss_pred             cEEEcccccCCC-CCCcccccc-ccCEEEccCccCCC
Q 011101          252 TFLDLRFNSFSG-PVPAEIFYL-DLDVLFLNNNKFSQ  286 (493)
Q Consensus       252 ~~L~Ls~n~l~~-~~p~~~~~~-~L~~L~L~~n~l~~  286 (493)
                      ++|+|++|.+++ .+|..+... +|++|++++|.+.+
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            888888888875 234556555 78888888777754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=3.1e-28  Score=268.43  Aligned_cols=257  Identities=18%  Similarity=0.246  Sum_probs=169.4

Q ss_pred             CCccceEEEEcCCCCcCCCCC--------------ccchhhh--CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDF--------------SLSDFLE--KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN  234 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~--------------~~~~~l~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~  234 (493)
                      ..+.+++.|+|++|.+++..+              .+|..++  ++++|++|+|++|++.+.+|..|+++++|++|+|++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            345778888888888887100              0677766  888888888888888888888888888888888888


Q ss_pred             CC-CCC-CCcccccCCC-------CCcEEEcccccCCCCCCc--ccccc-ccCEEEccCccCCCCccccccccccc-hhh
Q 011101          235 NK-LFG-GFPMEVVNIK-------NLTFLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVT  301 (493)
Q Consensus       235 n~-l~~-~~p~~l~~l~-------~L~~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~  301 (493)
                      |+ +++ .+|..+..+.       +|++|+|++|.++ .+|.  .+... +|++|+|++|.+. .+| .++.+..+ +|+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence            87 776 6776665554       8888888888887 7777  56555 7888888888877 666 67777766 778


Q ss_pred             cccCcCCCCCchhhhhhhh-hHHHHhccccccCCCcccccCCCC--CcEEEecCCCCCCCCc------------------
Q 011101          302 FANNEFTGPIPSSIGRAKY-LLEVLFLNNFFTGCLPYEIGFLSN--STVFDVGNNRLTGPIP------------------  360 (493)
Q Consensus       302 l~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p------------------  360 (493)
                      +++|.+. .+|..+..+++ |++|+|++|.++ .+|..+..+..  |+.|+|++|.+++.+|                  
T Consensus       602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            8888877 77777777777 777777777777 56665555433  6666666666655433                  


Q ss_pred             ----------ccc-cCCCCCCEEEcccCCCCCCcchhhcCCC--------CCcEEeeeCCcCCCCCcccc--CCCCCCEE
Q 011101          361 ----------HSF-GCLSSMQYLNLAMNQFYGPVPEIVCQLP--------KLVNLSLSYNYFTQVGPECR--KLIKRKVL  419 (493)
Q Consensus       361 ----------~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--------~L~~L~Ls~N~l~~~~~~~~--~l~~L~~L  419 (493)
                                ..+ ..+++|++|+|++|+|+ .+|..+....        +|+.|+|++|+|+.++..+.  .+++|+.|
T Consensus       680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred             ccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence                      222 23444555555555554 3333322211        45555555555555444443  55555555


Q ss_pred             EeeCCcCCCCCCCC
Q 011101          420 DVRMNCILDLPNQR  433 (493)
Q Consensus       420 ~L~~N~l~~lp~~~  433 (493)
                      +|++|.|+++|..+
T Consensus       759 ~Ls~N~L~~lp~~l  772 (876)
T 4ecn_A          759 DVSYNCFSSFPTQP  772 (876)
T ss_dssp             ECCSSCCSSCCCGG
T ss_pred             EeCCCCCCccchhh
Confidence            55555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=7.3e-28  Score=261.84  Aligned_cols=275  Identities=17%  Similarity=0.151  Sum_probs=203.3

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc--CcccCC--CCCCCEEECcCCCCCCCCcccccCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI--PKMTSK--LKFLYELDVSNNKLFGGFPMEVVNIK  249 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--p~~~~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~  249 (493)
                      .+++.|++++|.+.+   ..+..+..+++|++|++++|.+....  ...|..  ..+|++|++++|.+++..+..|..++
T Consensus       329 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPG---IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             TTCCEEECCSCCBCC---CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCCEEECCCCccCC---CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            344555555555554   33444555555555555555433211  111111  13566666666667666677788888


Q ss_pred             CCcEEEcccccCCCCCCc-ccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCC--CCCchhhhhhhhhHHH
Q 011101          250 NLTFLDLRFNSFSGPVPA-EIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT--GPIPSSIGRAKYLLEV  324 (493)
Q Consensus       250 ~L~~L~Ls~n~l~~~~p~-~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~--~~~p~~l~~l~~L~~L  324 (493)
                      +|++|+|++|.+.+.++. .+... +|++|++++|++.+..+..+..+..+ +|++++|.+.  +.+|..+..+++|++|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            888888888888766663 33333 88888888888877777777777777 8888888876  5678889999999999


Q ss_pred             HhccccccCCCcccccCCCCCcEEEecCCCCCCCC--------cccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101          325 LFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI--------PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNL  396 (493)
Q Consensus       325 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  396 (493)
                      ++++|.+++..+..|..+++|++|+|++|.+++..        ...|..+++|++|+|++|+++...+..|.++++|+.|
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence            99999999777778899999999999999988531        1237888999999999999995545578899999999


Q ss_pred             eeeCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCCCC-----CCchhhcccccCCCCCCCC
Q 011101          397 SLSYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLPNQ-----RSREECGKFFSESKKCPNE  451 (493)
Q Consensus       397 ~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~-----~~~~~~~~~~~~~~~c~~~  451 (493)
                      +|++|+|+++++. |..+++|+.|++++|.|++++..     +..+....+.+|++.|.+.
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999999998774 67899999999999999998753     3456667888999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.1e-27  Score=247.92  Aligned_cols=226  Identities=18%  Similarity=0.084  Sum_probs=150.7

Q ss_pred             CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEc
Q 011101          201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFL  279 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L  279 (493)
                      ++|++|+|++|+|++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|.+++..+..+... +|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            355555555555555445555555555555555555555444555555555555555555553322223322 5555555


Q ss_pred             cCccCCCCccccccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101          280 NNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG  357 (493)
Q Consensus       280 ~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  357 (493)
                      ++|.+....+..+..+..+ +|++++|+..+.++ ..|..+.+|++|++++|.+++ ++ .+..+.+|++|+|++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            5555554333444555444 55555533322333 356777888888888888874 33 57788889999999999988


Q ss_pred             CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCC
Q 011101          358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+|++++. .+..+++|+.|+|++|.+..
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            778888888999999999999887778888888899999999999988765 46778889999999987653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.6e-28  Score=240.88  Aligned_cols=244  Identities=16%  Similarity=0.229  Sum_probs=212.5

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCc--cCcccCCCCCCCEEE
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKS--IPKMTSKLKFLYELD  231 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~  231 (493)
                      .|.++.|....     .....+++.|++++|+++.   .....+.++++|++|++++|.++..  .+..+..+++|++|+
T Consensus         8 ~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            89999997433     2344689999999999997   4445589999999999999999843  356677899999999


Q ss_pred             CcCCCCCCCCcccccCCCCCcEEEcccccCCCCCC-cccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCC
Q 011101          232 VSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVP-AEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFT  308 (493)
Q Consensus       232 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~  308 (493)
                      |++|.++ .++..+..+++|++|++++|.+++..+ ..+... +|++|++++|.+.+..+..+..+..+ +|++++|.+.
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            9999996 577779999999999999999985443 344444 99999999999998888888888888 9999999998


Q ss_pred             C-CCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh
Q 011101          309 G-PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV  387 (493)
Q Consensus       309 ~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  387 (493)
                      + .++..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            6 578889999999999999999998888899999999999999999997777788999999999999999999889889


Q ss_pred             cCCC-CCcEEeeeCCcCCCC
Q 011101          388 CQLP-KLVNLSLSYNYFTQV  406 (493)
Q Consensus       388 ~~l~-~L~~L~Ls~N~l~~~  406 (493)
                      ..++ +|++|+|++|.+++.
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECS
T ss_pred             HhhhccCCEEEccCCCeecc
Confidence            8884 999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=6.3e-30  Score=251.77  Aligned_cols=266  Identities=18%  Similarity=0.112  Sum_probs=213.8

Q ss_pred             CCCCCCCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCC-CccCcccC----
Q 011101          148 ANTWMGPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT-KSIPKMTS----  222 (493)
Q Consensus       148 ~~~W~~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~~~p~~~~----  222 (493)
                      ...|.....|..+..+....    ...+++.|++++|.+ .    +|..+...  |+.|++++|.++ ..++..+.    
T Consensus        21 ~~~~~~~~~c~~~~~~~~~~----~~~~L~~l~l~~n~l-~----~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~   89 (312)
T 1wwl_A           21 KPDWSSAFNCLGAADVELYG----GGRSLEYLLKRVDTE-A----DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGAL   89 (312)
T ss_dssp             SCCGGGGGGSSSCSEEEEEE----EEEECTTHHHHCCTT-C----CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHH
T ss_pred             ccchHHHhhhhccccEEEEc----cCCCceeEeeccccc-c----cHHHHHHH--HhhcccccccccCCCcCHHHHHHHH
Confidence            34576444554555544321    235788899999998 5    56666544  899999999994 45555554    


Q ss_pred             ---CCCCCCEEECcCCCCCCCCcccc--cCCCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCcccc
Q 011101          223 ---KLKFLYELDVSNNKLFGGFPMEV--VNIKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPEN  291 (493)
Q Consensus       223 ---~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~  291 (493)
                         ++++|++|+|++|.+++.+|..+  ..+++|++|+|++|.+++. |..+..      .+|++|+|++|++.+..+..
T Consensus        90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~  168 (312)
T 1wwl_A           90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ  168 (312)
T ss_dssp             HHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred             HhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence               78999999999999998888876  8999999999999999966 665543      48999999999999888889


Q ss_pred             ccccccc-hhhcccCcCCCC--Cchhh--hhhhhhHHHHhccccccC--CCc-ccccCCCCCcEEEecCCCCCCCCc-cc
Q 011101          292 IGSTGAL-YVTFANNEFTGP--IPSSI--GRAKYLLEVLFLNNFFTG--CLP-YEIGFLSNSTVFDVGNNRLTGPIP-HS  362 (493)
Q Consensus       292 ~~~~~~l-~L~l~~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~  362 (493)
                      ++.+..+ +|++++|.+.+.  ++..+  ..+++|++|++++|.+++  .++ ..+..+++|++|+|++|.+++..+ ..
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            9998888 999999998764  33444  788999999999999983  222 344678999999999999998764 45


Q ss_pred             ccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC
Q 011101          363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       363 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      +..+++|++|+|++|+|+ .+|..+.  ++|++|+|++|+|++++. +..+++|++|++++|.|++.
T Consensus       249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence            667899999999999998 7777765  899999999999999954 89999999999999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=247.26  Aligned_cols=242  Identities=18%  Similarity=0.123  Sum_probs=166.3

Q ss_pred             EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcc
Q 011101          178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR  257 (493)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  257 (493)
                      .++.++.+++.    +|..+.  ++++.|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        47 ~v~c~~~~l~~----iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           47 KVICVRKNLRE----VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             EEECCSCCCSS----CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             EEEeCCCCcCc----CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45555555554    444332  456666666666665555566666666666666666665555566666666666666


Q ss_pred             cccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCc-hhhhhhhhhHHHHhccccccCC
Q 011101          258 FNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIP-SSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       258 ~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      +|.++...+..+... +|++|+|++|.+....+..+..+..+ +|++++|+..+.++ ..|.++++|++|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            666663333333333 66666666666665444455555555 66666643333333 35777788888888888887 4


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCC
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL  413 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l  413 (493)
                      ++ .+..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++++. .+..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            44 47788888999999998887778888888889999999998887777788888889999999998888765 46778


Q ss_pred             CCCCEEEeeCCcCC
Q 011101          414 IKRKVLDVRMNCIL  427 (493)
Q Consensus       414 ~~L~~L~L~~N~l~  427 (493)
                      ++|+.|+|++|.+.
T Consensus       279 ~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          279 HHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEcCCCCcc
Confidence            88899999888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=263.17  Aligned_cols=257  Identities=17%  Similarity=0.117  Sum_probs=202.4

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcc--cCCCCCCCEEECcCCCCCCCCc-ccccC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKM--TSKLKFLYELDVSNNKLFGGFP-MEVVN  247 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p-~~l~~  247 (493)
                      ....+|+.|+|++|.+.+   ..|..|..+++|++|+|++|.+++.++..  |+++++|++|+|++|.+++..+ ..|.+
T Consensus        70 ~~L~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           70 RNLPNLRILDLGSSKIYF---LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             SSCTTCCEEECTTCCCCE---ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             cCCCCCCEEECCCCcCcc---cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            345678888888888877   56777888888888888888887755544  7788888888888888876544 46778


Q ss_pred             CCCCcEEEcccccCCCCCCcccccc---------------------------------ccCEEEccCccCCCCccccccc
Q 011101          248 IKNLTFLDLRFNSFSGPVPAEIFYL---------------------------------DLDVLFLNNNKFSQNLPENIGS  294 (493)
Q Consensus       248 l~~L~~L~Ls~n~l~~~~p~~~~~~---------------------------------~L~~L~L~~n~l~~~~p~~~~~  294 (493)
                      +++|++|+|++|.+++..+..+...                                 +|++|++++|.+.+..+..+..
T Consensus       147 L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence            8888888888887776555443221                                 2667777777665444433321


Q ss_pred             c--------------------------------------ccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC
Q 011101          295 T--------------------------------------GAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL  335 (493)
Q Consensus       295 ~--------------------------------------~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  335 (493)
                      .                                      ..+ .|++++|.+.+..+..+..+++|+.|+|++|.+.+..
T Consensus       227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  306 (844)
T 3j0a_A          227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA  306 (844)
T ss_dssp             TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred             hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence            1                                      223 6788888888777888899999999999999999888


Q ss_pred             cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCC
Q 011101          336 PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIK  415 (493)
Q Consensus       336 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~  415 (493)
                      +..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.++++..    +++
T Consensus       307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~  382 (844)
T 3j0a_A          307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPS  382 (844)
T ss_dssp             TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCS
T ss_pred             hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCC
Confidence            8899999999999999999998889999999999999999999998777889999999999999999987643    778


Q ss_pred             CCEEEeeCCcCCCCCCCCC
Q 011101          416 RKVLDVRMNCILDLPNQRS  434 (493)
Q Consensus       416 L~~L~L~~N~l~~lp~~~~  434 (493)
                      |+.|++++|.++.+|....
T Consensus       383 L~~L~l~~N~l~~l~~~~~  401 (844)
T 3j0a_A          383 IPDIFLSGNKLVTLPKINL  401 (844)
T ss_dssp             CSEEEEESCCCCCCCCCCT
T ss_pred             cchhccCCCCccccccccc
Confidence            8999999999888876533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=5.8e-27  Score=251.31  Aligned_cols=246  Identities=16%  Similarity=0.039  Sum_probs=201.0

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN  250 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  250 (493)
                      ....+++.|++++|.+++   ..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++
T Consensus        29 ~~~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           29 DIPSSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             TSCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCCCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            345789999999999998   66678999999999999999999888889999999999999999999888999999999


Q ss_pred             CcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC-Cccccccccccc-hhhcccCcCCCCCchhhhhhhhhH----H
Q 011101          251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLL----E  323 (493)
Q Consensus       251 L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~-~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~----~  323 (493)
                      |++|+|++|.+++..+..+... +|++|++++|.+.+ .+|..++++..+ +|++++|.+.+..+..+..+.+|+    +
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            9999999999996665666666 99999999999986 579999999988 999999999988888898888876    6


Q ss_pred             HHhccccccCCCcccccCCCCCcEEEecCCCCCC----------------------------------------------
Q 011101          324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG----------------------------------------------  357 (493)
Q Consensus       324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~----------------------------------------------  357 (493)
                      |++++|.+++..+..+.. .+|++|++++|.+++                                              
T Consensus       186 L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  264 (606)
T 3vq2_A          186 LDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID  264 (606)
T ss_dssp             EECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred             eeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence            999999998655555444 489999998887641                                              


Q ss_pred             ------------CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc
Q 011101          358 ------------PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC  425 (493)
Q Consensus       358 ------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~  425 (493)
                                  .++. +..+++|++|++++|.+. .++ .+..+++|++|++++|.+..++ .+ .+++|+.|++++|.
T Consensus       265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~  339 (606)
T 3vq2_A          265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNK  339 (606)
T ss_dssp             EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCS
T ss_pred             heeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCc
Confidence                        1222 445567777777777775 344 5666777777777777775554 44 77777777777773

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.2e-27  Score=251.22  Aligned_cols=276  Identities=19%  Similarity=0.174  Sum_probs=180.9

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCC-CCcccccCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFG-GFPMEVVNIKN  250 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~  250 (493)
                      ...+++.|+|++|.+++   ..+..|..+++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..|.++++
T Consensus        74 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  150 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (570)
T ss_dssp             TCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             CchhCCEEeCcCCcCCc---cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence            45678888888888877   555778888888888888888886555568888888888888888876 46888888888


Q ss_pred             CcEEEcccccCCCCCCcccccc----------------------------------------------------------
Q 011101          251 LTFLDLRFNSFSGPVPAEIFYL----------------------------------------------------------  272 (493)
Q Consensus       251 L~~L~Ls~n~l~~~~p~~~~~~----------------------------------------------------------  272 (493)
                      |++|++++|.+++..+..+...                                                          
T Consensus       151 L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~  230 (570)
T 2z63_A          151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  230 (570)
T ss_dssp             CCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEE
T ss_pred             CCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCcccccee
Confidence            8888888887764333222111                                                          


Q ss_pred             ----------------------------------------------------ccCEEEccCccCCCCcccccc-------
Q 011101          273 ----------------------------------------------------DLDVLFLNNNKFSQNLPENIG-------  293 (493)
Q Consensus       273 ----------------------------------------------------~L~~L~L~~n~l~~~~p~~~~-------  293 (493)
                                                                          +|++|++++|.+. .++..+.       
T Consensus       231 ~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L  309 (570)
T 2z63_A          231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHL  309 (570)
T ss_dssp             EEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEE
T ss_pred             eeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEE
Confidence                                                                2222222222222 1111111       


Q ss_pred             -----------------------------------ccccc-hhhcccCcCCCCC--chhhhhhh----------------
Q 011101          294 -----------------------------------STGAL-YVTFANNEFTGPI--PSSIGRAK----------------  319 (493)
Q Consensus       294 -----------------------------------~~~~l-~L~l~~n~l~~~~--p~~l~~l~----------------  319 (493)
                                                         .+..+ +|++++|.+.+..  +..+..++                
T Consensus       310 ~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             EEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             eeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence                                               11112 3344444433221  33344444                


Q ss_pred             -------hhHHHHhccccccCCCc-ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCC-CCcchhhcCC
Q 011101          320 -------YLLEVLFLNNFFTGCLP-YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY-GPVPEIVCQL  390 (493)
Q Consensus       320 -------~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l  390 (493)
                             +|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++ +.+|..+..+
T Consensus       390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  469 (570)
T 2z63_A          390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  469 (570)
T ss_dssp             EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence                   44445555555544333 34566777777777777777667777777888888888888876 4577778888


Q ss_pred             CCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCCCCCCC-C---CchhhcccccCCCCCCCC
Q 011101          391 PKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCILDLPNQ-R---SREECGKFFSESKKCPNE  451 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~-~---~~~~~~~~~~~~~~c~~~  451 (493)
                      ++|+.|+|++|+++++ +..+..+++|++|++++|.|++++.. +   ..++.+.+.+|+..|.+.
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            8888888888888887 44778888899999999988887643 2   344556677787777543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.1e-27  Score=242.91  Aligned_cols=242  Identities=19%  Similarity=0.127  Sum_probs=210.5

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|..|.|....     .....+++.|+|++|++++   ..+..|..+++|++|+|++|.|++..+..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35677776432     3345689999999999998   678889999999999999999998888899999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-hhhcccCcCCCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFANNEFTGP  310 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~l~~~  310 (493)
                      +|.+++..+..|.++++|++|+|++|.++...+..+... +|++|+|++|...+.++ ..+..+..+ +|++++|.+.+.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            999987777789999999999999999994444445444 99999999965554554 457788887 999999999854


Q ss_pred             CchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101          311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       311 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                       + .+..+.+|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence             4 57889999999999999999889999999999999999999998888999999999999999999997777788899


Q ss_pred             CCCcEEeeeCCcCCC
Q 011101          391 PKLVNLSLSYNYFTQ  405 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~  405 (493)
                      ++|+.|+|++|.+..
T Consensus       290 ~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          290 RYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEccCCCcCC
Confidence            999999999998765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-27  Score=231.06  Aligned_cols=222  Identities=18%  Similarity=0.091  Sum_probs=148.0

Q ss_pred             EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101          177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL  256 (493)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  256 (493)
                      +.+++++++++.    +|..+  .++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        14 ~~~~c~~~~l~~----ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQA----VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSS----CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCccc----CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            678888888887    55433  468999999999998777677889999999999999998777888889999999999


Q ss_pred             cccc-CCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          257 RFNS-FSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       257 s~n~-l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      ++|. +....+..+... +|++|++++|.+.+..+..+..                       +++|++|++++|.+++.
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~  144 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-----------------------LAALQYLYLQDNALQAL  144 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------CTTCCEEECCSSCCCCC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-----------------------CcCCCEEECCCCccccc
Confidence            9997 664445555554 8888888888887544444444                       44444555555555443


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCC
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL  413 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l  413 (493)
                      .+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|+|+++++ .+..+
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  224 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence            33445555566666666666554334445555566666666666655555555555666666666666665543 35555


Q ss_pred             CCCCEEEeeCCcCC
Q 011101          414 IKRKVLDVRMNCIL  427 (493)
Q Consensus       414 ~~L~~L~L~~N~l~  427 (493)
                      ++|+.|++++|.+.
T Consensus       225 ~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          225 RALQYLRLNDNPWV  238 (285)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cccCEEeccCCCcc
Confidence            66666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=8.5e-27  Score=240.44  Aligned_cols=242  Identities=18%  Similarity=0.145  Sum_probs=210.5

Q ss_pred             CCCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|..|.|...     +.....+++.|+|++|++++   ..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3567788632     23445789999999999998   667889999999999999999998877899999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-hhhcccCcCCCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFANNEFTGP  310 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~l~~~  310 (493)
                      +|.++...+..|..+++|++|+|++|.++...+..+... +|++|+|++|...+.++ ..+..+..+ +|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999987777789999999999999999995444455544 99999999965554554 467888888 9999999998 4


Q ss_pred             CchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101          311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       311 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                      +| .+..+.+|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            55 47889999999999999998889999999999999999999998888899999999999999999998777888999


Q ss_pred             CCCcEEeeeCCcCCC
Q 011101          391 PKLVNLSLSYNYFTQ  405 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~  405 (493)
                      ++|+.|+|++|.+..
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=5.6e-27  Score=248.36  Aligned_cols=91  Identities=14%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCC-ccCcccCCCCCCCEEECcCCCCCCCCc-ccccCCCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTK-SIPKMTSKLKFLYELDVSNNKLFGGFP-MEVVNIKNL  251 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L  251 (493)
                      .+++.|++++|.+++   ..+..++.+++|++|++++|.+++ ..+..++++++|++|++++|.+.+.++ ..|.++++|
T Consensus        74 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           74 GSLEHLDLSDNHLSS---LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             TTCCEEECTTSCCCS---CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             ccCCEEECCCCccCc---cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            444555555555544   333334555555555555555443 133344455555555555554222222 344455555


Q ss_pred             cEEEcccccCCCCCCc
Q 011101          252 TFLDLRFNSFSGPVPA  267 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~  267 (493)
                      ++|++++|.+++.++.
T Consensus       151 ~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          151 NELEIKALSLRNYQSQ  166 (549)
T ss_dssp             EEEEEEETTCCEECTT
T ss_pred             CeeeccCCcccccChh
Confidence            5555555555443333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=236.89  Aligned_cols=264  Identities=14%  Similarity=0.077  Sum_probs=220.1

Q ss_pred             EEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccc
Q 011101          179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF  258 (493)
Q Consensus       179 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  258 (493)
                      .++++++++.    +|..+.  ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++
T Consensus        36 c~~~~~~l~~----iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           36 CKGSSGSLNS----IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             EECCSTTCSS----CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eeCCCCCccc----cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            8999999997    676554  5899999999999976666899999999999999999988888899999999999999


Q ss_pred             ccCCCCCCcc-cccc-ccCEEEccCccCCCCcc-ccccccccc-hhhcccCc-CCCCCchhhhhhhhhHHHHhccccccC
Q 011101          259 NSFSGPVPAE-IFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-YVTFANNE-FTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       259 n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      |.+++ ++.. +... +|++|++++|++.+... ..+..+..+ +|++++|. +....+..+..+++|++|++++|.+.+
T Consensus       110 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            99994 5544 5544 99999999999985433 377888888 99999994 666667789999999999999999998


Q ss_pred             CCcccccCCCCCcEEEecCCCCCCCCccc-ccCCCCCCEEEcccCCCCCCcchhhc---CCCCCcEEeeeCCcCCC----
Q 011101          334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHS-FGCLSSMQYLNLAMNQFYGPVPEIVC---QLPKLVNLSLSYNYFTQ----  405 (493)
Q Consensus       334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----  405 (493)
                      ..+..+..+++|++|++++|.++ .++.. +..+++|++|+|++|++++..+..+.   ....++.++|+++.+++    
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            88999999999999999999997 45544 45689999999999999876544332   45678999999999886    


Q ss_pred             -CCccccCCCCCCEEEeeCCcCCCCCCCC----CchhhcccccCCCCCCC
Q 011101          406 -VGPECRKLIKRKVLDVRMNCILDLPNQR----SREECGKFFSESKKCPN  450 (493)
Q Consensus       406 -~~~~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~~~~~c~~  450 (493)
                       ++..+..+++|+.|++++|.|+.+|...    ..++.+.+.+|++.|.+
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence             4456789999999999999999999753    34555677888888863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.3e-27  Score=233.96  Aligned_cols=238  Identities=14%  Similarity=0.059  Sum_probs=191.6

Q ss_pred             ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101          175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL  254 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  254 (493)
                      +++..+++.+.+..   .....+..+++|++|++++|++++..+..|.++++|++|+|++|.+++..+  +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQ---ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHH---HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhh---hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            46667777777766   445556677789999999999988777788899999999999998875543  8888999999


Q ss_pred             EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      +|++|.+++ ++   ...+|++|++++|.+.+..+..+   ..+ +|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        86 ~Ls~n~l~~-l~---~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           86 DLNNNYVQE-LL---VGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             ECCSSEEEE-EE---ECTTCCEEECCSSCCSEEEECCC---SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             ECcCCcccc-cc---CCCCcCEEECCCCccCCcCcccc---CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            999998873 32   12588999999999886554443   334 88889999887777788888999999999999987


Q ss_pred             CCcccc-cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccC
Q 011101          334 CLPYEI-GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRK  412 (493)
Q Consensus       334 ~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  412 (493)
                      ..+..+ ..+++|++|+|++|.+++. +. ...+++|++|+|++|++++ ++..+..+++|+.|+|++|+|++++..+..
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence            666666 4789999999999999843 33 3358899999999999985 555588889999999999999988888888


Q ss_pred             CCCCCEEEeeCCcCC
Q 011101          413 LIKRKVLDVRMNCIL  427 (493)
Q Consensus       413 l~~L~~L~L~~N~l~  427 (493)
                      +++|+.|++++|.++
T Consensus       236 l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          236 SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCEEECTTCCCB
T ss_pred             CCCCCEEEccCCCcc
Confidence            999999999999988

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=6.4e-26  Score=226.16  Aligned_cols=242  Identities=22%  Similarity=0.280  Sum_probs=202.9

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN  250 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  250 (493)
                      ....+++.|++++|.++.    ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.....++ .+..+++
T Consensus        85 ~~l~~L~~L~L~~n~i~~----~~-~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~  156 (347)
T 4fmz_A           85 SNLVKLTNLYIGTNKITD----IS-ALQNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTG  156 (347)
T ss_dssp             TTCTTCCEEECCSSCCCC----CG-GGTTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTT
T ss_pred             hcCCcCCEEEccCCcccC----ch-HHcCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCC
Confidence            456789999999999987    43 6999999999999999998643 3 8999999999999997654444 4899999


Q ss_pred             CcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101          251 LTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNN  329 (493)
Q Consensus       251 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (493)
                      |++|++++|.+.+ ++......+|++|++++|.+.+..+  +..+..+ ++++++|.+.+..+  +..+++|++|++++|
T Consensus       157 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          157 LNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CCEEECCSSCCCC-CGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             CcEEEecCCCcCC-chhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            9999999999984 4432233399999999999985433  6677777 89999999886543  888999999999999


Q ss_pred             cccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-
Q 011101          330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-  408 (493)
Q Consensus       330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-  408 (493)
                      .+++..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++..+ 
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence            9985433  8899999999999999985 4 4688999999999999999864  457889999999999999998754 


Q ss_pred             cccCCCCCCEEEeeCCcCCCCCC
Q 011101          409 ECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       409 ~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      .+..+++|++|++++|.+++++.
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG
T ss_pred             HhhccccCCEEEccCCccccccC
Confidence            67899999999999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4e-26  Score=221.47  Aligned_cols=222  Identities=17%  Similarity=0.073  Sum_probs=183.8

Q ss_pred             cEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCc
Q 011101          204 AIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN  282 (493)
Q Consensus       204 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n  282 (493)
                      ++++.+++.++. +|..+  .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+... +|++|+|++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            678888888874 55433  5789999999999987777788999999999999999986666666655 8888888888


Q ss_pred             c-CCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcc
Q 011101          283 K-FSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH  361 (493)
Q Consensus       283 ~-l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  361 (493)
                      . +..                       ..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+.
T Consensus        91 ~~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           91 AQLRS-----------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTCCC-----------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCccc-----------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence            7 542                       2244566778888899999999877788899999999999999999976667


Q ss_pred             cccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC-CccccCCCCCCEEEeeCCcCCCCCCC----CCch
Q 011101          362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPECRKLIKRKVLDVRMNCILDLPNQ----RSRE  436 (493)
Q Consensus       362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~----~~~~  436 (493)
                      .|..+++|++|+|++|++++..+..+..+++|+.|++++|+|+++ +..+..+++|+.|++++|.|++++..    ...+
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            789999999999999999966666789999999999999999997 45789999999999999999998743    3445


Q ss_pred             hhcccccCCCCCCCC
Q 011101          437 ECGKFFSESKKCPNE  451 (493)
Q Consensus       437 ~~~~~~~~~~~c~~~  451 (493)
                      ..+.+.+|++.|.+.
T Consensus       228 ~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          228 QYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CEEECCSSCEECSGG
T ss_pred             CEEeccCCCccCCCC
Confidence            567788888888643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.5e-25  Score=215.67  Aligned_cols=216  Identities=24%  Similarity=0.211  Sum_probs=162.1

Q ss_pred             CCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          154 PDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       154 ~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .+.| .|.|+.|.-.     .+++.+++++++++.    +|..+.  .+|++|++++|++++..+..|.++++|++|+|+
T Consensus         2 ~~~C-~~~~~~C~c~-----~~~~~l~~~~~~l~~----ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   69 (270)
T 2o6q_A            2 EALC-KKDGGVCSCN-----NNKNSVDCSSKKLTA----IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN   69 (270)
T ss_dssp             CCCB-GGGTCSBEEE-----TTTTEEECTTSCCSS----CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC
T ss_pred             CccC-CCCCCCCEeC-----CCCCEEEccCCCCCc----cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC
Confidence            4678 9999998743     346789999999987    555443  578999999999987776789999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCc
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP  312 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p  312 (493)
                      +|.++...+..|.++++|++|+|++|.+++..+..+... +|++|+|++|.+.+                          
T Consensus        70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------  123 (270)
T 2o6q_A           70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--------------------------  123 (270)
T ss_dssp             SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC--------------------------
T ss_pred             CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe--------------------------
Confidence            999986666667888999999999988874333333333 66666666665542                          


Q ss_pred             hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCC
Q 011101          313 SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPK  392 (493)
Q Consensus       313 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  392 (493)
                                           ..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus       124 ---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          124 ---------------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             ---------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---------------------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence                                 22334556677888888888887555555777888888888888887666666777888


Q ss_pred             CcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCC
Q 011101          393 LVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       393 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~  428 (493)
                      |++|+|++|+|++++. .+..+++|+.|++++|.+..
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            8888888888887765 46778888888888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=238.22  Aligned_cols=250  Identities=16%  Similarity=0.075  Sum_probs=188.9

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN  250 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  250 (493)
                      ....+++.|++++|.+++   ..+..|..+++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++
T Consensus        25 ~l~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           25 NLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SSCSSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CccccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            345679999999999998   56678999999999999999999877788999999999999999998888889999999


Q ss_pred             CcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC-Cccccccccccc-hhhcccCcCCCCCchhhhhhhhh----HH
Q 011101          251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYL----LE  323 (493)
Q Consensus       251 L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~-~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L----~~  323 (493)
                      |++|++++|.+++..+..+... +|++|++++|.+.+ .+|..++++..+ +|++++|.+.+..+..++.+.+|    +.
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            9999999999985444345555 99999999999987 468899998888 99999999998888888888888    77


Q ss_pred             HHhccccccCCCcccccCCCCCcEEEecCCC-------------------------------------------------
Q 011101          324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR-------------------------------------------------  354 (493)
Q Consensus       324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-------------------------------------------------  354 (493)
                      |++++|.+.+..+..+... +|+.|++++|.                                                 
T Consensus       182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            8888888886666555444 56666666652                                                 


Q ss_pred             ---------CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc
Q 011101          355 ---------LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC  425 (493)
Q Consensus       355 ---------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~  425 (493)
                               +.+..+..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.++.++.  ..+++|+.|++++|.
T Consensus       261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred             hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence                     22333444555566666666666665 455555555 66666666666665443  245555555555555


Q ss_pred             CCC
Q 011101          426 ILD  428 (493)
Q Consensus       426 l~~  428 (493)
                      +..
T Consensus       337 ~~~  339 (570)
T 2z63_A          337 GGN  339 (570)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=5.9e-25  Score=219.16  Aligned_cols=238  Identities=19%  Similarity=0.236  Sum_probs=169.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++++|.+++    ++. +..+++|++|++++|.++. + ..+.++++|++|++++|.+++. +. +..+++|+
T Consensus        65 ~~~L~~L~l~~n~i~~----~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~  135 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITD----ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY  135 (347)
T ss_dssp             CTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred             cCCccEEEccCCcccc----chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence            4567788888877776    333 7777788888888887775 3 3577778888888888877543 32 67777888


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +|++++|.....++......+|++|++++|.+.+..+  +..+..+ +|++++|.+.+. +. +..+++|+.|++++|.+
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l  211 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQI  211 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCC
Confidence            8888877655455442223378888888887765433  5666666 778888877643 32 67777788888888877


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcccc
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR  411 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~  411 (493)
                      .+..+  +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++.  ..+..+++|++|++++|+++++ +.+.
T Consensus       212 ~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~  284 (347)
T 4fmz_A          212 TDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLN  284 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGG
T ss_pred             CCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhc
Confidence            75433  6777888888888888874 333 77788888888888888753  4577788888888888888876 4577


Q ss_pred             CCCCCCEEEeeCCcCCCCC
Q 011101          412 KLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       412 ~l~~L~~L~L~~N~l~~lp  430 (493)
                      .+++|+.|++++|.+++.+
T Consensus       285 ~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGG
T ss_pred             CCCCCCEEECcCCcCCCcC
Confidence            7888888888888877643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=2.1e-25  Score=239.76  Aligned_cols=124  Identities=23%  Similarity=0.193  Sum_probs=105.8

Q ss_pred             CcCCCCCchhhhhhhhhHHHHhcccccc-CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101          305 NEFTGPIPSSIGRAKYLLEVLFLNNFFT-GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV  383 (493)
Q Consensus       305 n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  383 (493)
                      |.+.+..+..+..++.|+.|++++|.+. +..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..
T Consensus       455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  534 (635)
T 4g8a_A          455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  534 (635)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence            3333334445556677888899998754 456788999999999999999999888999999999999999999999888


Q ss_pred             chhhcCCCCCcEEeeeCCcCCCCCc-cccCC-CCCCEEEeeCCcCCC
Q 011101          384 PEIVCQLPKLVNLSLSYNYFTQVGP-ECRKL-IKRKVLDVRMNCILD  428 (493)
Q Consensus       384 p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l-~~L~~L~L~~N~l~~  428 (493)
                      +..+..+++|++|||++|+|+++++ .+..+ .+|++|+|++|.+..
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            8899999999999999999999866 67777 689999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=1.1e-24  Score=225.31  Aligned_cols=228  Identities=19%  Similarity=0.185  Sum_probs=193.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++++|.+++    ++ .+..+++|++|++++|++++. +  ++.+++|++|++++|.+++. +  +.++++|+
T Consensus        41 l~~L~~L~Ls~n~l~~----~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD----MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCC----CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             cCCCCEEEccCCCccc----Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            4679999999999998    45 689999999999999999974 3  88999999999999999864 3  88999999


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF  330 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  330 (493)
                      +|++++|.+++ ++  +... +|++|++++|++++.   .++.+..+ +|++++|...+.+  .+..+++|++|++++|.
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            99999999985 44  4444 999999999999874   37777777 8999999766666  47888999999999999


Q ss_pred             ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccc
Q 011101          331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC  410 (493)
Q Consensus       331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~  410 (493)
                      +++ ++  +..+++|++|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|+|++++  +
T Consensus       182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~  250 (457)
T 3bz5_A          182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--V  250 (457)
T ss_dssp             CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred             cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--H
Confidence            996 44  78899999999999999964   47889999999999999997 55  788999999999999999985  4


Q ss_pred             cCCCCCCEEEeeCCcCCCCC
Q 011101          411 RKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       411 ~~l~~L~~L~L~~N~l~~lp  430 (493)
                      ..+++|+.|++++|.++.+.
T Consensus       251 ~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          251 STLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             TTCTTCCEEECTTCCCSCCC
T ss_pred             HHCCCCCEEeccCCCCCEEE
Confidence            57788888888888887764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.7e-26  Score=238.49  Aligned_cols=223  Identities=16%  Similarity=0.089  Sum_probs=178.3

Q ss_pred             cchhhhCCC----cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc
Q 011101          193 LSDFLEKLE----DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE  268 (493)
Q Consensus       193 ~~~~l~~l~----~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  268 (493)
                      ++..+..+.    +|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+  |..+++|++|+|++|.+++ ++. 
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~-   97 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLV-   97 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEE-
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCC-
Confidence            444454444    78888888888887777788888888888888888876554  7788888888888888773 221 


Q ss_pred             ccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCccccc-CCCCCc
Q 011101          269 IFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIG-FLSNST  346 (493)
Q Consensus       269 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~  346 (493)
                        ..+|++|++++|.+.+..+..+   ..+ +|++++|.+++..+..++.+++|+.|+|++|.+++..+..+. .+++|+
T Consensus        98 --~~~L~~L~L~~N~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           98 --GPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             --CTTCCEEECCSSCCCCEEECCC---SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             --CCCcCEEECcCCcCCCCCcccc---CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence              2578888888888876555433   334 788888888887788888889999999999999987777775 789999


Q ss_pred             EEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC
Q 011101          347 VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI  426 (493)
Q Consensus       347 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l  426 (493)
                      +|+|++|.+++. + .+..+++|++|+|++|.|++ ++..+..+++|+.|+|++|.|++++..+..+++|+.|++++|.+
T Consensus       173 ~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          173 HLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             EEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence            999999999854 3 33468899999999999986 44558889999999999999999888888899999999999998


Q ss_pred             C
Q 011101          427 L  427 (493)
Q Consensus       427 ~  427 (493)
                      .
T Consensus       250 ~  250 (487)
T 3oja_A          250 H  250 (487)
T ss_dssp             C
T ss_pred             c
Confidence            8

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=7.8e-25  Score=227.39  Aligned_cols=238  Identities=23%  Similarity=0.329  Sum_probs=128.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++++|.+++    ++. +..+++|++|++++|.+++..+  ++++++|++|++++|.+++..+  +.++++|+
T Consensus        67 l~~L~~L~Ls~n~l~~----~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  137 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTD----ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN  137 (466)
T ss_dssp             CTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             hcCCCEEECCCCccCC----chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence            4677888888888776    333 7777788888888777775443  7777777777777777764322  66677777


Q ss_pred             EEEcccccCCCCCCcc--------------------ccc-cccCEEEccCccCCCCccccccccccc-hhhcccCcCCCC
Q 011101          253 FLDLRFNSFSGPVPAE--------------------IFY-LDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGP  310 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~--------------------~~~-~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~  310 (493)
                      +|++++|.+.+ ++..                    +.. .+|++|++++|.+.+.  ..+..+..+ +|++++|.+.+.
T Consensus       138 ~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          138 RLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI  214 (466)
T ss_dssp             EEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             EEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence            77777776653 2210                    111 1556666666665432  123344333 445555544433


Q ss_pred             Cc--------------------hhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCC
Q 011101          311 IP--------------------SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ  370 (493)
Q Consensus       311 ~p--------------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  370 (493)
                      .+                    ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +..+++|+
T Consensus       215 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~  290 (466)
T 1o6v_A          215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT  290 (466)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred             ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC
Confidence            22                    233444444444444444443222  44445555555555555432 21 44455555


Q ss_pred             EEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC
Q 011101          371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       371 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      +|+|++|++++..+  +..+++|+.|+|++|+++++.+ +..+++|+.|++++|.++++
T Consensus       291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc
Confidence            55555555543322  4445555555555555555433 44555555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=9.7e-25  Score=226.69  Aligned_cols=236  Identities=24%  Similarity=0.333  Sum_probs=164.3

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|+++++++..    ++ .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++..+  +.++++|+
T Consensus        45 l~~l~~L~l~~~~i~~----l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  115 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS----ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  115 (466)
T ss_dssp             HHTCCEEECCSSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hccccEEecCCCCCcc----Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence            3579999999999887    55 48889999999999999997544  9999999999999999976544  89999999


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCcc-------------------ccccccccc-hhhcccCcCCCCC
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLP-------------------ENIGSTGAL-YVTFANNEFTGPI  311 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-------------------~~~~~~~~l-~L~l~~n~l~~~~  311 (493)
                      +|+|++|.+++ ++. +... +|++|++++|.+.+...                   ..+..+..+ +|++++|.+.+. 
T Consensus       116 ~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-  192 (466)
T 1o6v_A          116 GLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-  192 (466)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred             EEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-
Confidence            99999999984 444 4443 99999999998875311                   124445556 899999998754 


Q ss_pred             chhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCC
Q 011101          312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP  391 (493)
Q Consensus       312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  391 (493)
                       ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+  +..++
T Consensus       193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  265 (466)
T 1o6v_A          193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLT  265 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence             358888999999999999886544  5556666666666666663 2 234555555555555555554332  44444


Q ss_pred             CCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          392 KLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       392 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      +|+.|++++|+++++++ +..+++|+.|++++|.+++
T Consensus       266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred             CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence            45555555554444432 3334444444444444333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.4e-26  Score=227.82  Aligned_cols=224  Identities=14%  Similarity=0.127  Sum_probs=189.2

Q ss_pred             ceEEEEcCCCCcCCCCCccchhhh-------CCCcCcEEEccCCcCCCccCccc--CCCCCCCEEECcCCCCCCCCcccc
Q 011101          175 AVAGVDFNGYRFNGPDFSLSDFLE-------KLEDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFPMEV  245 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~~~~~~~l~-------~l~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~l  245 (493)
                      .++.|+|++|.+...  .++..+.       .+++|++|++++|++++.+|..+  ..+++|++|+|++|.+++. |..+
T Consensus        64 ~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~  140 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL  140 (312)
T ss_dssp             HHHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred             HHhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence            488899999998531  5676665       79999999999999999888876  8999999999999999877 7888


Q ss_pred             cCC-----CCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCC--ccccc--cccccc-hhhcccCcCCC--CCc
Q 011101          246 VNI-----KNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQN--LPENI--GSTGAL-YVTFANNEFTG--PIP  312 (493)
Q Consensus       246 ~~l-----~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~--~p~~~--~~~~~l-~L~l~~n~l~~--~~p  312 (493)
                      ..+     ++|++|+|++|.+.+..+..+... +|++|+|++|++.+.  .+..+  +.+..+ +|++++|.+.+  .++
T Consensus       141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  220 (312)
T 1wwl_A          141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC  220 (312)
T ss_dssp             HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred             HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence            777     999999999999997776777766 999999999998765  33344  677777 99999999983  222


Q ss_pred             -hhhhhhhhhHHHHhccccccCCCc-ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101          313 -SSIGRAKYLLEVLFLNNFFTGCLP-YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       313 -~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                       ..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.++ .+|..+.  ++|++|+|++|+|++. |. +..+
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l  295 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL  295 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred             HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence             334567899999999999998774 55677899999999999999 7888776  8999999999999966 65 8899


Q ss_pred             CCCcEEeeeCCcCCCC
Q 011101          391 PKLVNLSLSYNYFTQV  406 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~~  406 (493)
                      ++|++|+|++|.|++.
T Consensus       296 ~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          296 PQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEEEEECTTCTTTCC
T ss_pred             CCCCEEeccCCCCCCC
Confidence            9999999999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-26  Score=228.91  Aligned_cols=240  Identities=16%  Similarity=0.164  Sum_probs=204.6

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|+|++|.+++   ..+..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++     +...++|+
T Consensus        33 ~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~  102 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIE  102 (317)
T ss_dssp             GGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCC
T ss_pred             CCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcC
Confidence            3589999999999999   677889999999999999999987654  8999999999999999864     33458999


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhh-hhhhhHHHHhcccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIG-RAKYLLEVLFLNNF  330 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~  330 (493)
                      +|++++|.+++..+..  ..+|++|++++|++.+..+..++.+..+ +|++++|.+.+..+..+. .+++|++|++++|.
T Consensus       103 ~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          103 TLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             EEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            9999999998544332  3489999999999998878888888888 999999999987777764 78999999999999


Q ss_pred             ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC-C-CCc
Q 011101          331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT-Q-VGP  408 (493)
Q Consensus       331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~-~~~  408 (493)
                      +++. + ....+++|++|+|++|.+++ ++..+..+++|++|+|++|+|+ .+|..+..+++|+.|++++|.++ + ++.
T Consensus       181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             Cccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            9854 3 33458999999999999994 5666889999999999999999 57888999999999999999999 3 444


Q ss_pred             cccCCCCCCEEEeeCC-cCCC
Q 011101          409 ECRKLIKRKVLDVRMN-CILD  428 (493)
Q Consensus       409 ~~~~l~~L~~L~L~~N-~l~~  428 (493)
                      .+..+++|+.|++++| .+++
T Consensus       257 ~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          257 FFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHS
T ss_pred             HHhccccceEEECCCchhccC
Confidence            6788889999998844 4444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.9e-26  Score=239.23  Aligned_cols=234  Identities=16%  Similarity=0.164  Sum_probs=202.3

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+|+.|+|++|.+++   ..+..|..+++|++|+|++|.+++..+  |..+++|++|+|++|.|++.     ...++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCC
T ss_pred             CCCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcC
Confidence            3589999999999999   677899999999999999999997665  99999999999999999643     2348999


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhh-hhhhhHHHHhcccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIG-RAKYLLEVLFLNNF  330 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~  330 (493)
                      +|+|++|.+++..+..  ..+|++|+|++|.+.+..+..++.+..+ +|++++|.+++..+..+. .+++|+.|+|++|.
T Consensus       103 ~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          103 TLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EEECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            9999999999654432  2489999999999999888899988888 999999999998888886 78999999999999


Q ss_pred             ccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC--CCCc
Q 011101          331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT--QVGP  408 (493)
Q Consensus       331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~~  408 (493)
                      +++. + .+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.|++ +|..+..+++|+.|++++|.+.  .++.
T Consensus       181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            9965 3 34469999999999999996 55568899999999999999994 7888999999999999999998  3444


Q ss_pred             cccCCCCCCEEEee
Q 011101          409 ECRKLIKRKVLDVR  422 (493)
Q Consensus       409 ~~~~l~~L~~L~L~  422 (493)
                      .+..++.|+.++++
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            66777777777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.5e-24  Score=224.44  Aligned_cols=234  Identities=21%  Similarity=0.200  Sum_probs=128.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++++|.+++    ++  ++.+++|++|++++|++++ ++  ++.+++|++|++++|.+++.   .+..+++|+
T Consensus        84 l~~L~~L~Ls~N~l~~----~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~  151 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTN----LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLT  151 (457)
T ss_dssp             CTTCSEEECCSSCCSC----CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCC
T ss_pred             CCCCCEEECcCCCCce----ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCC
Confidence            4456666666666655    22  5556666666666666654 22  55556666666666665542   244555555


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF  330 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  330 (493)
                      +|++++|...+.++  +... +|++|++++|++++ ++  ++.+..+ +|++++|.+++.   .++.+++|++|++++|+
T Consensus       152 ~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          152 ELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             EEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC
T ss_pred             EEECCCCCcccccc--cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc
Confidence            55555554333331  2221 45555555555543 22  3333333 444444444432   24444444444444444


Q ss_pred             ccCCCcccccCCCCCcEEEecCCCCCCCCccc-----------------------------ccCCCCCCEEEcccCCCCC
Q 011101          331 FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHS-----------------------------FGCLSSMQYLNLAMNQFYG  381 (493)
Q Consensus       331 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-----------------------------l~~l~~L~~L~Ls~N~l~~  381 (493)
                      +++ +|  +..+++|++|++++|.+++..+..                             +..+++|++|+|++|.+.+
T Consensus       224 l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          224 LTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             CSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCC
T ss_pred             ccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccc
Confidence            443 22  344444444444444444322221                             2345667777777776555


Q ss_pred             Ccch--------hhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC
Q 011101          382 PVPE--------IVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       382 ~~p~--------~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      .+|.        .+..+++|+.|++++|+|+++  .+..+++|+.|++++|+|++++.
T Consensus       301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~l~~  356 (457)
T 3bz5_A          301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSS  356 (457)
T ss_dssp             EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCBCTT
T ss_pred             eeccCCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCCccc
Confidence            4443        245567888999999999887  37888999999999999988753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.2e-24  Score=209.88  Aligned_cols=220  Identities=18%  Similarity=0.104  Sum_probs=143.8

Q ss_pred             EEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccc
Q 011101          179 VDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF  258 (493)
Q Consensus       179 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  258 (493)
                      ++..+.++..    +|..+.  ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++
T Consensus        12 ~~c~~~~l~~----ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           12 YQCMELNFYK----IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EECTTSCCSS----CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEecCCCccc----cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence            3444444444    444332  3577777777777765555677777777777777777665555667777777777777


Q ss_pred             ccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC-Cc
Q 011101          259 NSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC-LP  336 (493)
Q Consensus       259 n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p  336 (493)
                      |.+++..+..+... +|++|++++|.+.+..+.                       .+..+++|++|++++|.+.+. ++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~l~  142 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----------------------PIGHLKTLKELNVAHNLIQSFKLP  142 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-----------------------CCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCch-----------------------hcccCCCCCEEECcCCccceecCc
Confidence            77765444444444 677777776666532221                       234445556666666666542 46


Q ss_pred             ccccCCCCCcEEEecCCCCCCCCcccccCCCCCC----EEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCcc-cc
Q 011101          337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ----YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE-CR  411 (493)
Q Consensus       337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~  411 (493)
                      ..+..+++|++|+|++|++++..+..+..+.+|+    +|++++|.+++..+. .....+|+.|+|++|+|++++.. +.
T Consensus       143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred             hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhc
Confidence            6777777888888888888766666666555555    788888888754433 33445788888888888887664 57


Q ss_pred             CCCCCCEEEeeCCcCCC
Q 011101          412 KLIKRKVLDVRMNCILD  428 (493)
Q Consensus       412 ~l~~L~~L~L~~N~l~~  428 (493)
                      .+++|+.|++++|.++.
T Consensus       222 ~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TCCSCCEEECCSSCBCC
T ss_pred             ccccccEEEccCCcccc
Confidence            78888888888888875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=4e-24  Score=207.98  Aligned_cols=110  Identities=16%  Similarity=-0.021  Sum_probs=61.9

Q ss_pred             hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEe
Q 011101          318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLS  397 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  397 (493)
                      +++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            33444444444444433344455556666666666666644444455566666666666666644444445566666666


Q ss_pred             eeCCcCCCCCccccCCCCCCEEEeeCCcCC
Q 011101          398 LSYNYFTQVGPECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       398 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~  427 (493)
                      |++|+|+.++..+..+.+|+.|+|++|.+.
T Consensus       179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            666666666555555556666666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=7e-25  Score=226.73  Aligned_cols=232  Identities=21%  Similarity=0.216  Sum_probs=100.7

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCC-------------CEEECcCCCCCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFL-------------YELDVSNNKLFGG  240 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~  240 (493)
                      .+++.|++++|++ +   .+|..++++++|++|++++|.+++.+|..++++.+|             ++|++++|.+++ 
T Consensus        11 ~~L~~L~l~~n~l-~---~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-   85 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-T---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred             ccchhhhcccCch-h---hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence            5677777777777 4   477777777777777777777777777766666543             666666666643 


Q ss_pred             CcccccCCCCCcEEEcccccCCCCCCcccc------------------ccccCEEEccCccCCCCccccccccccc-hhh
Q 011101          241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIF------------------YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVT  301 (493)
Q Consensus       241 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------------------~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~  301 (493)
                      +|..   .++|++|++++|.+++ +|..+.                  ..+|++|++++|++.+ +| .++.+..+ +|+
T Consensus        86 lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           86 LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence            2221   2455555555555553 333210                  0244444444444443 33 24444444 444


Q ss_pred             cccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 011101          302 FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG  381 (493)
Q Consensus       302 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  381 (493)
                      +++|.+++ +|..+   .+|++|++++|.+++ ++ .+..+++|++|++++|.+++ +|...   .+|++|++++|+++ 
T Consensus       160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-  228 (454)
T ss_dssp             CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-
T ss_pred             CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-
Confidence            45544442 33222   244444444444443 33 34445555555555555442 32221   24455555555444 


Q ss_pred             CcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC
Q 011101          382 PVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       382 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      .+| .+..+++|++|++++|++++++..   +.+|+.|++++|.++++|.
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~  274 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE  274 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC
T ss_pred             ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc
Confidence            333 244555555555555555554321   2344445555444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.3e-23  Score=202.77  Aligned_cols=208  Identities=16%  Similarity=0.071  Sum_probs=159.6

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNL  251 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  251 (493)
                      ...+++.|++++|++++   ..+..+..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|
T Consensus        26 l~~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             SCTTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCCCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            34679999999999998   555689999999999999999998777789999999999999999998888899999999


Q ss_pred             cEEEcccccCCCCCCcccccc-ccCEEEccCccCCCC-ccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101          252 TFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQN-LPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNN  329 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~-~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (493)
                      ++|++++|.+.+..+..+... +|++|++++|.+.+. +|..+                       ..+++|++|++++|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----------------------~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----------------------SNLTNLEHLDLSSN  159 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-----------------------GGCTTCCEEECCSS
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-----------------------ccCCCCCEEECCCC
Confidence            999999999996555455555 999999999998752 34444                       44455555555555


Q ss_pred             cccCCCcccccCCCCCc----EEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101          330 FFTGCLPYEIGFLSNST----VFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       330 ~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      .+++..+..+..+.+|+    +|++++|.+++..+..+. ..+|++|+|++|++++..+..+..+++|+.|+|++|.++.
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            55544444444444444    788888888754444443 3478888888888886655666778888888888888876


Q ss_pred             C
Q 011101          406 V  406 (493)
Q Consensus       406 ~  406 (493)
                      .
T Consensus       239 ~  239 (276)
T 2z62_A          239 S  239 (276)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.2e-24  Score=213.83  Aligned_cols=204  Identities=17%  Similarity=0.066  Sum_probs=132.0

Q ss_pred             CcCcEEEccCCcCCCccCccc--CCCCCCCEEECcCCCCCCCCc----ccccCCCCCcEEEcccccCCCCCCcccccc-c
Q 011101          201 EDLAIFHANSNNFTKSIPKMT--SKLKFLYELDVSNNKLFGGFP----MEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-D  273 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~  273 (493)
                      ++|++|++++|.+++..+..+  ..+++|++|+|++|.+++..+    ..+..+++|++|+|++|.+.+..+..+... +
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555665555555555554  555555566666555554333    223345555555555555554444444333 5


Q ss_pred             cCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcc----cccCCCCCcEEE
Q 011101          274 LDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPY----EIGFLSNSTVFD  349 (493)
Q Consensus       274 L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~  349 (493)
                      |++|+|++|++.+...                   -.....+..+++|++|++++|+++ .++.    .+..+++|++|+
T Consensus       171 L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          171 LTSLDLSDNPGLGERG-------------------LMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             CCEEECCSCTTCHHHH-------------------HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEE
T ss_pred             CCEEECCCCCCccchh-------------------hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEE
Confidence            5555555555432100                   000112245667777777777776 2222    246778999999


Q ss_pred             ecCCCCCCCCcccccCC---CCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC
Q 011101          350 VGNNRLTGPIPHSFGCL---SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI  426 (493)
Q Consensus       350 Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l  426 (493)
                      |++|.+++..|..+..+   ++|++|+|++|+|+ .+|..+.  ++|++|+|++|+|++++. +..+++|+.|++++|.|
T Consensus       231 Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          231 LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             CCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence            99999997777777766   68999999999998 6677664  789999999999998743 67889999999999988


Q ss_pred             CC
Q 011101          427 LD  428 (493)
Q Consensus       427 ~~  428 (493)
                      +.
T Consensus       307 ~~  308 (310)
T 4glp_A          307 LV  308 (310)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=2.1e-24  Score=230.43  Aligned_cols=221  Identities=21%  Similarity=0.219  Sum_probs=106.2

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|+|++|.++.    ++.   .+++|++|+|++|+|++ +|.   .+++|++|+|++|.+++ ++.   .+.+|++
T Consensus        61 ~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPDNNLTS----LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECSCCCSC----CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCE
T ss_pred             CCCcEEEecCCCCCC----CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCE
Confidence            344555555555444    332   34455555555555542 332   34555555555555542 222   3455555


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      |+|++|.++ .+|..+  .+|++|+|++|.+.+ ++..+.++  ..|++++|.+++ ++   ..+++|+.|++++|.+++
T Consensus       126 L~L~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~~~~L--~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          126 LWIFGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPALPSEL--CKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             EECCSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCCCTTC--CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred             EECCCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCccCCC--CEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence            555555555 233321  356666666666553 22222111  133344444432 22   122455555555555553


Q ss_pred             CCccccc-----------------CCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101          334 CLPYEIG-----------------FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNL  396 (493)
Q Consensus       334 ~~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  396 (493)
                       ++..+.                 .+++|++|+|++|.+++ +|   ..+++|++|+|++|+|+ .+|.   .+++|+.|
T Consensus       196 -l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L  266 (622)
T 3g06_A          196 -LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL  266 (622)
T ss_dssp             -CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             -CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence             222110                 12445555555555552 33   23355566666666555 2333   34556666


Q ss_pred             eeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          397 SLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       397 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      +|++|+|+.++..+..+++|+.|+|++|.|++
T Consensus       267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             eCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence            66666666555555666666666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=6.1e-23  Score=197.47  Aligned_cols=199  Identities=23%  Similarity=0.279  Sum_probs=155.4

Q ss_pred             cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccc-ccc-ccCEEEc
Q 011101          202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI-FYL-DLDVLFL  279 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~-~L~~L~L  279 (493)
                      +++.+++++++++. +|..+.  .+|++|+|++|.+++..+..|.++++|++|+|++|.++ .++..+ ... +|++|+|
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence            46778888888873 555443  57888888888887666667788888888888888777 343332 222 5666666


Q ss_pred             cCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCC
Q 011101          280 NNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI  359 (493)
Q Consensus       280 ~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  359 (493)
                      ++|.+.                                               +..+..|..+++|++|+|++|.+++..
T Consensus        93 ~~n~l~-----------------------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~  125 (270)
T 2o6q_A           93 TDNKLQ-----------------------------------------------ALPIGVFDQLVNLAELRLDRNQLKSLP  125 (270)
T ss_dssp             CSSCCC-----------------------------------------------CCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CCCcCC-----------------------------------------------cCCHhHcccccCCCEEECCCCccCeeC
Confidence            655543                                               222344567889999999999999877


Q ss_pred             cccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCCC----CC
Q 011101          360 PHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPNQ----RS  434 (493)
Q Consensus       360 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~  434 (493)
                      +..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+|+++++ .+..+++|++|++++|.|++++..    ..
T Consensus       126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (270)
T 2o6q_A          126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE  205 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc
Confidence            7888999999999999999997766778999999999999999999876 578899999999999999999864    24


Q ss_pred             chhhcccccCCCCCCCC
Q 011101          435 REECGKFFSESKKCPNE  451 (493)
Q Consensus       435 ~~~~~~~~~~~~~c~~~  451 (493)
                      .+..+.+.+|++.|.+.
T Consensus       206 ~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          206 KLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCCEEECCSSCBCCSSS
T ss_pred             CCCEEEecCCCeeCCCc
Confidence            45667888999999754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=3.7e-23  Score=213.79  Aligned_cols=226  Identities=25%  Similarity=0.353  Sum_probs=135.7

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|++++|.+++    +| .++.+++|++|++++|++++ +|..+   .+|++|++++|.+++ +| .+.++++|++
T Consensus       131 ~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence            457777777777766    44 46777777777777777764 44332   467777777777764 44 4677777777


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      |++++|.+++ +|...  .+|++|++++|.+. .+| .++.+..+ +|++++|.+.+ +|..   +.+|++|++++|.++
T Consensus       200 L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          200 IYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             EECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred             EECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence            7777777763 44322  26677777777666 455 35555555 66666666663 3332   245555556666555


Q ss_pred             CCCcccccCCCCCcEEEecCCCCCC--CCcccc-------------cCC-CCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101          333 GCLPYEIGFLSNSTVFDVGNNRLTG--PIPHSF-------------GCL-SSMQYLNLAMNQFYGPVPEIVCQLPKLVNL  396 (493)
Q Consensus       333 ~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l-------------~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  396 (493)
                      + ++..   .++|++|++++|.+++  .++..+             ..+ ++|++|++++|++++ +|..   +++|++|
T Consensus       271 ~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L  342 (454)
T 1jl5_A          271 D-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERL  342 (454)
T ss_dssp             C-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             c-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence            3 3322   2444455555544443  121111             112 467777777777774 4443   4677778


Q ss_pred             eeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101          397 SLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       397 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      ++++|++++++.   .+.+|++|++++|.++++|
T Consensus       343 ~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~  373 (454)
T 1jl5_A          343 IASFNHLAEVPE---LPQNLKQLHVEYNPLREFP  373 (454)
T ss_dssp             ECCSSCCSCCCC---CCTTCCEEECCSSCCSSCC
T ss_pred             ECCCCccccccc---hhhhccEEECCCCCCCcCC
Confidence            888887777655   4677777888877777643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=6e-25  Score=220.72  Aligned_cols=249  Identities=18%  Similarity=0.155  Sum_probs=190.2

Q ss_pred             EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccC----cccCCCC-CCCEEECcCCCCCCCCcccccCC----
Q 011101          178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIP----KMTSKLK-FLYELDVSNNKLFGGFPMEVVNI----  248 (493)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l----  248 (493)
                      .+++++|++++   .++..+....+|++|+|++|.+++..+    ..|.+++ +|++|+|++|.+++..+..+..+    
T Consensus         2 ~~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGSN---PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTCC---HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccchH---HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            36788888888   777777777779999999999887655    6677787 89999999999887777767664    


Q ss_pred             -CCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCccccccc-----cccc-hhhcccCcCCCCCchhh
Q 011101          249 -KNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPENIGS-----TGAL-YVTFANNEFTGPIPSSI  315 (493)
Q Consensus       249 -~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~~~~-----~~~l-~L~l~~n~l~~~~p~~l  315 (493)
                       ++|++|+|++|.+++..+..+..      .+|++|+|++|.+.+.....+..     .+.+ +|++++|.+.......+
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             88999999999988666554432      37999999999988766555433     2344 88999998886544443


Q ss_pred             ----hhhh-hhHHHHhccccccCCCccccc----CC-CCCcEEEecCCCCCCC----CcccccC-CCCCCEEEcccCCCC
Q 011101          316 ----GRAK-YLLEVLFLNNFFTGCLPYEIG----FL-SNSTVFDVGNNRLTGP----IPHSFGC-LSSMQYLNLAMNQFY  380 (493)
Q Consensus       316 ----~~l~-~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~  380 (493)
                          ..+. +|++|+|++|.+++..+..+.    .+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|.++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence                4443 899999999999876665443    44 6999999999999863    4445554 458999999999998


Q ss_pred             CCcc----hhhcCCCCCcEEeeeCCcCCCCCc--------cccCCCCCCEEEeeCCcCCCC
Q 011101          381 GPVP----EIVCQLPKLVNLSLSYNYFTQVGP--------ECRKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       381 ~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~l~~L~~L~L~~N~l~~l  429 (493)
                      +...    ..+..+++|+.|+|++|.+.++..        .+..+.+|+.||+++|.|...
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            7654    334667899999999999665432        467788899999999998764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=3e-25  Score=224.82  Aligned_cols=238  Identities=16%  Similarity=0.166  Sum_probs=169.8

Q ss_pred             cchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCC---CCCCcccc-------cCCCCCcEEEccc
Q 011101          193 LSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKL---FGGFPMEV-------VNIKNLTFLDLRF  258 (493)
Q Consensus       193 ~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l-------~~l~~L~~L~Ls~  258 (493)
                      +...+..+++|++|+|++|.++..    +...+..+++|++|+|++|.+   ++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            455666777777777777777654    223466777777777777533   33444443       5677777777777


Q ss_pred             ccCCCC----CCcccccc-ccCEEEccCccCCCCccccccc----c---------ccc-hhhcccCcCC-CCCc---hhh
Q 011101          259 NSFSGP----VPAEIFYL-DLDVLFLNNNKFSQNLPENIGS----T---------GAL-YVTFANNEFT-GPIP---SSI  315 (493)
Q Consensus       259 n~l~~~----~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~----~---------~~l-~L~l~~n~l~-~~~p---~~l  315 (493)
                      |.+.+.    ++..+... +|++|+|++|.+.+..+..+..    +         ..+ +|++++|.+. +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            777752    44444333 7777777777775433333322    2         344 7777777776 3344   466


Q ss_pred             hhhhhhHHHHhccccccC-----CCcccccCCCCCcEEEecCCCCC----CCCcccccCCCCCCEEEcccCCCCCC----
Q 011101          316 GRAKYLLEVLFLNNFFTG-----CLPYEIGFLSNSTVFDVGNNRLT----GPIPHSFGCLSSMQYLNLAMNQFYGP----  382 (493)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----  382 (493)
                      ..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    +.++..+..+++|++|+|++|.|++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            677889999999998873     23347788999999999999996    46788888999999999999999865    


Q ss_pred             cchhhc--CCCCCcEEeeeCCcCCC-----CCccc-cCCCCCCEEEeeCCcCCCCC
Q 011101          383 VPEIVC--QLPKLVNLSLSYNYFTQ-----VGPEC-RKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       383 ~p~~l~--~l~~L~~L~Ls~N~l~~-----~~~~~-~~l~~L~~L~L~~N~l~~lp  430 (493)
                      ++..+.  .+++|+.|+|++|.|++     ++..+ .++++|+.|++++|.|++..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            456663  38999999999999998     55555 56899999999999998755

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.5e-23  Score=200.47  Aligned_cols=204  Identities=20%  Similarity=0.149  Sum_probs=127.4

Q ss_pred             hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccC
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD  275 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~  275 (493)
                      +..+++|+.|++++|.++. + ..+..+++|++|++++|.+++.  ..+..+++|++|+|++|.+++..+..+... +|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4455566666666666553 2 2355566666666666666532  355566666666666666664333333333 566


Q ss_pred             EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101          276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL  355 (493)
Q Consensus       276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  355 (493)
                      +|+|++|++.+.                       .+..+..+++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus       113 ~L~L~~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          113 ELVLVENQLQSL-----------------------PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             EEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCcc-----------------------CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence            666666655432                       223344555666666666666655555566777788888888887


Q ss_pred             CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC-CCCCC
Q 011101          356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD-LPNQR  433 (493)
Q Consensus       356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~~  433 (493)
                      ++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.+.      +++|+.|+++.|.+++ +|..+
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcc
Confidence            766666667777888888888888776666677778888888888876543      4467777777777764 55543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=4.6e-23  Score=196.13  Aligned_cols=190  Identities=21%  Similarity=0.207  Sum_probs=136.2

Q ss_pred             CCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCC
Q 011101          157 CNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK  236 (493)
Q Consensus       157 C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~  236 (493)
                      |..|.|..|..       ..+.+++++++++.    +|..+.  .+|+.|+|++|.+++..+..|.++++|++|+|++|.
T Consensus         4 Cp~~~gC~C~~-------~~~~l~~~~~~l~~----~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   70 (251)
T 3m19_A            4 CETVTGCTCNE-------GKKEVDCQGKSLDS----VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ   70 (251)
T ss_dssp             CHHHHSSEEEG-------GGTEEECTTCCCSS----CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCCceEcCC-------CCeEEecCCCCccc----cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc
Confidence            33888999962       46789999999987    665554  589999999999998888889999999999999999


Q ss_pred             CCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhh
Q 011101          237 LFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSI  315 (493)
Q Consensus       237 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l  315 (493)
                      +++..+..|.++++|++|+|++|.+++..+..+... +|++|+|++|++.+                             
T Consensus        71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------------  121 (251)
T 3m19_A           71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------------------------  121 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------
T ss_pred             CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-----------------------------
Confidence            988888888999999999999999885444444333 67777777666652                             


Q ss_pred             hhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcE
Q 011101          316 GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVN  395 (493)
Q Consensus       316 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  395 (493)
                                        ..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.
T Consensus       122 ------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          122 ------------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             ------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ------------------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence                              12223344556666666666666444445666666666666666666555555666666666


Q ss_pred             EeeeCCcCCCC
Q 011101          396 LSLSYNYFTQV  406 (493)
Q Consensus       396 L~Ls~N~l~~~  406 (493)
                      |+|++|.++..
T Consensus       184 L~l~~N~~~c~  194 (251)
T 3m19_A          184 ITLFGNQFDCS  194 (251)
T ss_dssp             EECCSCCBCTT
T ss_pred             EEeeCCceeCC
Confidence            66666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.3e-22  Score=197.38  Aligned_cols=199  Identities=19%  Similarity=0.114  Sum_probs=149.2

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.+++++++++.    +|..+.  ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+  ...+++|++
T Consensus        10 ~~l~~l~~~~~~l~~----ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTA----LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             TTCCEEECTTSCCSS----CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             CCccEEECCCCCCCc----CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            567778888887776    454442  577788888888877666777788888888888887764322  266777888


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      |+|++|.++ .+|..+... +|++|+|++|++++                       ..+..|..+++|++|++++|+++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-----------------------l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----------------------LPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-----------------------CCSSTTTTCTTCCEEECTTSCCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-----------------------cCHHHHcCCCCCCEEECCCCCCC
Confidence            888887777 566555444 67777777777653                       33345667777888888888888


Q ss_pred             CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101          333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      +..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..+.+|+.|+|++|.+..
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            666667788899999999999998655556778899999999999998 677778888899999999998865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.1e-23  Score=198.96  Aligned_cols=204  Identities=18%  Similarity=0.098  Sum_probs=163.0

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|+++++.+..    ++ .+..+++|++|++++|.+++.  ..+..+++|++|+|++|.+++..+..|.++++|+
T Consensus        40 l~~L~~L~l~~~~i~~----~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS----VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HTTCCEEECTTSCCCC----CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccceeeeeeCCCCccc----cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4679999999999887    33 588999999999999999863  4789999999999999999988888889999999


Q ss_pred             EEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +|+|++|.+++..+..+... +|++|++++|.+.+..+                       ..+..+++|++|++++|.+
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-----------------------GVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------------TTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH-----------------------HHhccCccCCEEECCCCCc
Confidence            99999999996655555554 99999999998874333                       2345566777777777777


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cc
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-EC  410 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~  410 (493)
                      ++..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|.+.+.       +++|+.|+++.|.+++..+ .+
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence            766666677888888888888888877777778888888888888887643       4568888888888887533 44


Q ss_pred             cCC
Q 011101          411 RKL  413 (493)
Q Consensus       411 ~~l  413 (493)
                      +.+
T Consensus       243 ~~~  245 (272)
T 3rfs_A          243 GSV  245 (272)
T ss_dssp             SCB
T ss_pred             ccc
Confidence            443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.2e-22  Score=199.35  Aligned_cols=192  Identities=18%  Similarity=0.232  Sum_probs=99.6

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|+++++++..    ++ .+..+++|++|++++|.+++..+  +..+++|++|+|++|.+++.  ..+..+++|+
T Consensus        40 l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT----IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             cCCcCEEEeeCCCccC----ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            3456777777776665    33 46667777777777777764332  66677777777777776542  2466666677


Q ss_pred             EEEcccccCCCCCCccccc-cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          253 FLDLRFNSFSGPVPAEIFY-LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +|+|++|.+++ ++. +.. .+|++|++++|.+.+.                        +. +..+++|++|++++|.+
T Consensus       111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~------------------------~~-l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI------------------------SP-LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC------------------------GG-GGGCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC------------------------cc-ccCCCCccEEEccCCcC
Confidence            77776666663 332 222 2556666655555421                        11 33344444444444444


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      ++. +. +..+++|++|++++|.+++ ++. +..+++|++|+|++|++++..  .+..+++|+.|+|++|.+++.
T Consensus       164 ~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          164 SDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             CCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            432 11 4444444444444444442 221 344444444444444444322  134444444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=8.1e-25  Score=217.09  Aligned_cols=260  Identities=15%  Similarity=0.152  Sum_probs=198.4

Q ss_pred             CCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCC--CcCcEEEccCCcCCCccCcccCCCCCCCEEEC
Q 011101          155 DVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKL--EDLAIFHANSNNFTKSIPKMTSKLKFLYELDV  232 (493)
Q Consensus       155 ~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l--~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L  232 (493)
                      ..|..|.++.|+.      ..++.+|++++.+..      ..+..+  .+++.|++++|.+.+..+. +..+++|++|+|
T Consensus        34 ~vc~~W~~~~~~~------~~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L  100 (336)
T 2ast_B           34 GVCKRWYRLASDE------SLWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDL  100 (336)
T ss_dssp             SSCHHHHHHHTCS------TTSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEEC
T ss_pred             HHHHHHHHHhcCc------hhheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEc
Confidence            4565788877652      347789999887664      456666  7899999999999877655 567899999999


Q ss_pred             cCCCCCCC-CcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCc-cCCCC-ccccccccccc-hhhcccC-c
Q 011101          233 SNNKLFGG-FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN-KFSQN-LPENIGSTGAL-YVTFANN-E  306 (493)
Q Consensus       233 s~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n-~l~~~-~p~~~~~~~~l-~L~l~~n-~  306 (493)
                      ++|.+++. ++..+..+++|++|+|++|.+++..+..+... +|++|+|++| .+++. ++..+..+..+ +|++++| .
T Consensus       101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence            99998755 77788899999999999999887777666655 8999999999 67653 55566777777 8889988 7


Q ss_pred             CCCC-Cchhhhhhh-hhHHHHhccc--ccc-CCCcccccCCCCCcEEEecCCC-CCCCCcccccCCCCCCEEEcccCC-C
Q 011101          307 FTGP-IPSSIGRAK-YLLEVLFLNN--FFT-GCLPYEIGFLSNSTVFDVGNNR-LTGPIPHSFGCLSSMQYLNLAMNQ-F  379 (493)
Q Consensus       307 l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l  379 (493)
                      +++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|+|++|. +
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence            7753 566778888 9999999998  444 3456677788999999999998 776777788888999999999985 3


Q ss_pred             CCCcchhhcCCCCCcEEeeeCCcCCCCCccccCC-CCCCEEEeeCCcCCCCC
Q 011101          380 YGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKL-IKRKVLDVRMNCILDLP  430 (493)
Q Consensus       380 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~L~~N~l~~lp  430 (493)
                      +......+..+++|+.|++++| ++..  .+..+ .+|+.|++++|.++++.
T Consensus       261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          261 IPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTT
T ss_pred             CHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCcccc
Confidence            3222235778899999999998 4432  22233 23666678999988753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=199.39  Aligned_cols=203  Identities=15%  Similarity=0.130  Sum_probs=164.4

Q ss_pred             cceEEEEcCCCCcCCCCCccchhh--hCCCcCcEEEccCCcCCCccC----cccCCCCCCCEEECcCCCCCCCCcccccC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFL--EKLEDLAIFHANSNNFTKSIP----KMTSKLKFLYELDVSNNKLFGGFPMEVVN  247 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l--~~l~~L~~L~L~~n~i~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  247 (493)
                      .+++.|++++|.+.+   ..+..+  ..+++|++|++++|.+++..+    ..+..+++|++|+|++|.+++..+..|.+
T Consensus        91 ~~L~~L~l~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           91 SRLKELTLEDLKITG---TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             SCCCEEEEESCCCBS---CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             CceeEEEeeCCEecc---chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            459999999999998   677777  899999999999999997544    44567999999999999999888899999


Q ss_pred             CCCCcEEEcccccCCCC--CCccc--ccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCch-hhhhhhhh
Q 011101          248 IKNLTFLDLRFNSFSGP--VPAEI--FYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPS-SIGRAKYL  321 (493)
Q Consensus       248 l~~L~~L~Ls~n~l~~~--~p~~~--~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~-~l~~l~~L  321 (493)
                      +++|++|+|++|++.+.  ++...  ... +|++|+|++|+++. ++.                    .+. .+..+++|
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~--------------------~~~~l~~~l~~L  226 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG--------------------VCAALAAAGVQP  226 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH--------------------HHHHHHHHTCCC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH--------------------HHHHHHhcCCCC
Confidence            99999999999998642  22222  222 78888888888752 111                    111 24667888


Q ss_pred             HHHHhccccccCCCcccccCC---CCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEee
Q 011101          322 LEVLFLNNFFTGCLPYEIGFL---SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL  398 (493)
Q Consensus       322 ~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  398 (493)
                      ++|+|++|.+.+..|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|+|++|+|++. |. +..+++|+.|+|
T Consensus       227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L  301 (310)
T 4glp_A          227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTL  301 (310)
T ss_dssp             SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEEC
T ss_pred             CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEEC
Confidence            899999999988777777776   69999999999999 6787764  7999999999999964 33 677899999999


Q ss_pred             eCCcCCC
Q 011101          399 SYNYFTQ  405 (493)
Q Consensus       399 s~N~l~~  405 (493)
                      ++|.|+.
T Consensus       302 ~~N~l~~  308 (310)
T 4glp_A          302 DGNPFLV  308 (310)
T ss_dssp             SSTTTSC
T ss_pred             cCCCCCC
Confidence            9999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2e-22  Score=190.10  Aligned_cols=195  Identities=16%  Similarity=0.079  Sum_probs=128.5

Q ss_pred             cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCC-CCCCCcccccCCCCCcEEEccc-ccCCCCCCcccccc-ccCEEE
Q 011101          202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNK-LFGGFPMEVVNIKNLTFLDLRF-NSFSGPVPAEIFYL-DLDVLF  278 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~-~L~~L~  278 (493)
                      +|++|++++|++++..+..|.++++|++|++++|. ++...+..|.++++|++|+|++ |.+++..+..+... +|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67788888888776655577777888888888886 7655555777778888888877 77774333444443 777777


Q ss_pred             ccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhH---HHHhccc-cccCCCcccccCCCCCc-EEEecCC
Q 011101          279 LNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL---EVLFLNN-FFTGCLPYEIGFLSNST-VFDVGNN  353 (493)
Q Consensus       279 L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N  353 (493)
                      +++|.+.+ +|.                        +..+.+|+   +|++++| .+++..+..|..+++|+ +|++++|
T Consensus       112 l~~n~l~~-lp~------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          112 IFNTGLKM-FPD------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             EEEECCCS-CCC------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             CCCCCCcc-ccc------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            77777653 221                        22222333   5666666 55544445566777777 7777777


Q ss_pred             CCCCCCcccccCCCCCCEEEcccCC-CCCCcchhhcCC-CCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCC
Q 011101          354 RLTGPIPHSFGCLSSMQYLNLAMNQ-FYGPVPEIVCQL-PKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMN  424 (493)
Q Consensus       354 ~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N  424 (493)
                      +++ .++.......+|++|+|++|+ +++..+..+..+ ++|+.|++++|+|++++..  .+.+|+.|+++++
T Consensus       167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            777 444433333677777777774 765545666777 7777788877777776554  5667777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.8e-21  Score=190.98  Aligned_cols=200  Identities=20%  Similarity=0.263  Sum_probs=169.0

Q ss_pred             hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCE
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDV  276 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~  276 (493)
                      +..+++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+  +..+++|++|+|++|.+++ ++......+|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCE
Confidence            5568899999999999985 44 68999999999999999975443  8999999999999999984 553223339999


Q ss_pred             EEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCC
Q 011101          277 LFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLT  356 (493)
Q Consensus       277 L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  356 (493)
                      |++++|.+.+.                        + .+..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus       112 L~l~~n~l~~~------------------------~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          112 LDLTSTQITDV------------------------T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             EECTTSCCCCC------------------------G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCc------------------------h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            99999988631                        1 25677889999999999986433  889999999999999999


Q ss_pred             CCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCCC
Q 011101          357 GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR  433 (493)
Q Consensus       357 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~  433 (493)
                      + ++. +..+++|++|+|++|++++..+  +..+++|+.|+|++|+|+++++ +..+++|+.|++++|.|+..|..+
T Consensus       165 ~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          165 D-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             C-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             C-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence            5 444 8899999999999999986543  7889999999999999999874 889999999999999999987644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=5.6e-24  Score=215.43  Aligned_cols=232  Identities=18%  Similarity=0.188  Sum_probs=188.5

Q ss_pred             ccceEEEEcCCCCcCCCCCccc----hhhhCCCcCcEEEccCCcC---CCccCccc-------CCCCCCCEEECcCCCCC
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLS----DFLEKLEDLAIFHANSNNF---TKSIPKMT-------SKLKFLYELDVSNNKLF  238 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~----~~l~~l~~L~~L~L~~n~i---~~~~p~~~-------~~l~~L~~L~Ls~n~l~  238 (493)
                      ..+++.|+|++|.++.   ..+    ..+..+++|++|+|++|.+   ++.+|..+       ..+++|++|+|++|.++
T Consensus        31 ~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGT---EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             CSCCCEEECTTSEECH---HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             CCCccEEECCCCCCCH---HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3579999999999987   433    3477899999999999644   44555444       78999999999999998


Q ss_pred             C----CCcccccCCCCCcEEEcccccCCCCCCccccc--------------cccCEEEccCccCC-CCcc---ccccccc
Q 011101          239 G----GFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY--------------LDLDVLFLNNNKFS-QNLP---ENIGSTG  296 (493)
Q Consensus       239 ~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--------------~~L~~L~L~~n~l~-~~~p---~~~~~~~  296 (493)
                      +    .++..+..+++|++|+|++|.++...+..+..              .+|++|+|++|++. +.++   ..+..+.
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            6    46778899999999999999997444333332              58999999999997 3344   3555666


Q ss_pred             cc-hhhcccCcCCC-----CCchhhhhhhhhHHHHhcccccc----CCCcccccCCCCCcEEEecCCCCCCC----Cccc
Q 011101          297 AL-YVTFANNEFTG-----PIPSSIGRAKYLLEVLFLNNFFT----GCLPYEIGFLSNSTVFDVGNNRLTGP----IPHS  362 (493)
Q Consensus       297 ~l-~L~l~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~  362 (493)
                      .+ +|++++|.+..     .++..+..+++|++|+|++|.++    +.++..+..+++|++|+|++|.+++.    ++..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            66 99999999873     33447788999999999999996    56778889999999999999999865    5666


Q ss_pred             cc--CCCCCCEEEcccCCCCC----Ccchhh-cCCCCCcEEeeeCCcCCCCC
Q 011101          363 FG--CLSSMQYLNLAMNQFYG----PVPEIV-CQLPKLVNLSLSYNYFTQVG  407 (493)
Q Consensus       363 l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~  407 (493)
                      +.  .+++|++|+|++|.|++    .++..+ .++++|++|+|++|.+++..
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            63  48999999999999997    477777 56899999999999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=8.6e-23  Score=204.97  Aligned_cols=231  Identities=14%  Similarity=0.142  Sum_probs=183.3

Q ss_pred             ccceEEEEcCCCCcCCCCCccc----hhhhCCC-cCcEEEccCCcCCCccCcccCCC-----CCCCEEECcCCCCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLS----DFLEKLE-DLAIFHANSNNFTKSIPKMTSKL-----KFLYELDVSNNKLFGGFP  242 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~----~~l~~l~-~L~~L~L~~n~i~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~p  242 (493)
                      ..+++.|||++|.+++   ...    ..+..++ +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+
T Consensus        21 ~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             CTTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            3569999999999998   444    6788898 99999999999998766666664     999999999999987766


Q ss_pred             cccc----CC-CCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCcccc----ccccc-cc-hhhcccC
Q 011101          243 MEVV----NI-KNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPEN----IGSTG-AL-YVTFANN  305 (493)
Q Consensus       243 ~~l~----~l-~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~----~~~~~-~l-~L~l~~n  305 (493)
                      ..+.    .+ ++|++|+|++|.+++.....+..      .+|++|+|++|.+.+.....    +.... .+ +|++++|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            6444    44 89999999999998665544432      38999999999998644433    34433 45 9999999


Q ss_pred             cCCCCCchhhhhh-----hhhHHHHhccccccCC----CcccccC-CCCCcEEEecCCCCCCCCc----ccccCCCCCCE
Q 011101          306 EFTGPIPSSIGRA-----KYLLEVLFLNNFFTGC----LPYEIGF-LSNSTVFDVGNNRLTGPIP----HSFGCLSSMQY  371 (493)
Q Consensus       306 ~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~  371 (493)
                      .+++..+..+...     ++|++|+|++|.+.+.    ++..+.. .++|++|+|++|.+++...    ..+..+++|++
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~  257 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT  257 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence            9998887766655     6999999999999863    3445555 4599999999999996544    34567899999


Q ss_pred             EEcccCCCCCCcc-------hhhcCCCCCcEEeeeCCcCCCC
Q 011101          372 LNLAMNQFYGPVP-------EIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       372 L~Ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      |+|++|.+.+...       ..+..+++|+.||+++|+|...
T Consensus       258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            9999999654332       3566788899999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=3.3e-24  Score=221.99  Aligned_cols=254  Identities=15%  Similarity=0.087  Sum_probs=127.6

Q ss_pred             ceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCCccCccc-----CCCCCCCEEECcCCCCCCCC----ccc
Q 011101          175 AVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-----SKLKFLYELDVSNNKLFGGF----PME  244 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~~----p~~  244 (493)
                      +++.|++++|.++... ..++..+..+++|++|++++|.+++.....+     ....+|++|++++|.+++..    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            5777777777776311 0246667777777777777777764322221     22456777777777766432    344


Q ss_pred             ccCCCCCcEEEcccccCCCCCCcccc------ccccCEEEccCccCCCC----ccccccccccc-hhhcccCcCCCCCch
Q 011101          245 VVNIKNLTFLDLRFNSFSGPVPAEIF------YLDLDVLFLNNNKFSQN----LPENIGSTGAL-YVTFANNEFTGPIPS  313 (493)
Q Consensus       245 l~~l~~L~~L~Ls~n~l~~~~p~~~~------~~~L~~L~L~~n~l~~~----~p~~~~~~~~l-~L~l~~n~l~~~~p~  313 (493)
                      +..+++|++|+|++|.+.......+.      ..+|++|++++|.+.+.    ++..+..+..+ +|++++|.+.+....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            45566777777777666533222221      11566666666665542    23333344444 555555554422111


Q ss_pred             hh-----hhhhhhHHHHhccccccCC----CcccccCCCC-----------------------------CcEEEecCCCC
Q 011101          314 SI-----GRAKYLLEVLFLNNFFTGC----LPYEIGFLSN-----------------------------STVFDVGNNRL  355 (493)
Q Consensus       314 ~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~-----------------------------L~~L~Ls~N~l  355 (493)
                      .+     ..+++|++|++++|.++..    ++..+..+++                             |++|+|++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence            11     1234445555555544432    2333334444                             45555555544


Q ss_pred             CCC----CcccccCCCCCCEEEcccCCCCCCcchhhcC-----CCCCcEEeeeCCcCCC-----CCccccCCCCCCEEEe
Q 011101          356 TGP----IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ-----LPKLVNLSLSYNYFTQ-----VGPECRKLIKRKVLDV  421 (493)
Q Consensus       356 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~L  421 (493)
                      ++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|+|++|+|++     ++..+..+++|++|++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l  405 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  405 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence            432    2333444455555555555554333322221     3455555555555552     2333444555555555


Q ss_pred             eCCcCCC
Q 011101          422 RMNCILD  428 (493)
Q Consensus       422 ~~N~l~~  428 (493)
                      ++|.|++
T Consensus       406 ~~N~i~~  412 (461)
T 1z7x_W          406 SNNCLGD  412 (461)
T ss_dssp             CSSSCCH
T ss_pred             CCCCCCH
Confidence            5555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=3.6e-21  Score=183.02  Aligned_cols=179  Identities=21%  Similarity=0.130  Sum_probs=142.1

Q ss_pred             CCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhccc
Q 011101          226 FLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFAN  304 (493)
Q Consensus       226 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~  304 (493)
                      ..++++++++.++ .+|..+.  .+|++|+|++|.+++..+..+... +|++|+|++|.+.+                  
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------   73 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------------------   73 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------------------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------------------
Confidence            4566777777775 4554443  567777777777775555444444 66677766666653                  


Q ss_pred             CcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcc
Q 011101          305 NEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP  384 (493)
Q Consensus       305 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  384 (493)
                           ..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+
T Consensus        74 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           74 -----LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             -----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence                 444556777888888888888887777788899999999999999997666678899999999999999997777


Q ss_pred             hhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCC
Q 011101          385 EIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       385 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      ..+..+++|++|+|++|+|+++++ .+..+++|+.|++++|.++.-.
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            789999999999999999999876 6889999999999999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.5e-21  Score=184.22  Aligned_cols=199  Identities=14%  Similarity=0.110  Sum_probs=159.2

Q ss_pred             CccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCc-CCCccCcccCCCCCCCEEECcC-CCCCCCCcccccCCC
Q 011101          172 KKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNN-FTKSIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIK  249 (493)
Q Consensus       172 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~  249 (493)
                      ...+++.|++++|++++   ..+..+..+++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|.+++
T Consensus        29 ~~~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             CCTTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             CCCcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            44589999999999998   555689999999999999997 8866666899999999999999 999877778899999


Q ss_pred             CCcEEEcccccCCCCCCcccccc-ccC---EEEccCc-cCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhH-H
Q 011101          250 NLTFLDLRFNSFSGPVPAEIFYL-DLD---VLFLNNN-KFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLL-E  323 (493)
Q Consensus       250 ~L~~L~Ls~n~l~~~~p~~~~~~-~L~---~L~L~~n-~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~-~  323 (493)
                      +|++|++++|.+++ +|. +... +|+   +|++++| .+.+..                       +..|..+++|+ +
T Consensus       106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-----------------------~~~~~~l~~L~~~  160 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLT  160 (239)
T ss_dssp             TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-----------------------TTTTTTTBSSEEE
T ss_pred             CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-----------------------cccccchhcceeE
Confidence            99999999999995 776 4433 777   8999888 766322                       23456677777 8


Q ss_pred             HHhccccccCCCcccccCCCCCcEEEecCCC-CCCCCcccccCC-CCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC
Q 011101          324 VLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR-LTGPIPHSFGCL-SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN  401 (493)
Q Consensus       324 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  401 (493)
                      |++++|.++ .++.......+|++|+|++|. +++..+..|..+ ++|++|+|++|++++ +|..  .+.+|+.|+++++
T Consensus       161 L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             EEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            888888887 444443334789999999995 886666778888 899999999999984 4443  5778999998876


Q ss_pred             c
Q 011101          402 Y  402 (493)
Q Consensus       402 ~  402 (493)
                      .
T Consensus       237 ~  237 (239)
T 2xwt_C          237 W  237 (239)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=1e-23  Score=218.26  Aligned_cols=257  Identities=16%  Similarity=0.060  Sum_probs=180.0

Q ss_pred             ccceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCCccCccc-CCCC----CCCEEECcCCCCCC----CCc
Q 011101          173 KKAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKSIPKMT-SKLK----FLYELDVSNNKLFG----GFP  242 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~-~~l~----~L~~L~Ls~n~l~~----~~p  242 (493)
                      ..+++.|++++|+++... ..++..+..+++|++|++++|.++......+ ..+.    +|++|+|++|.++.    .++
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            356888888888877410 0245667788888888888888875333222 2344    68888888888873    456


Q ss_pred             ccccCCCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCc----cccccccccc-hhhcccCcCCCCC
Q 011101          243 MEVVNIKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNL----PENIGSTGAL-YVTFANNEFTGPI  311 (493)
Q Consensus       243 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~----p~~~~~~~~l-~L~l~~n~l~~~~  311 (493)
                      ..+..+++|++|+|++|.+++.....+..      .+|++|++++|.+++..    +..+..+..+ +|++++|.+....
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            77788888888888888886543333322      26888888888887643    4444555666 8888888876544


Q ss_pred             chhhhh-----hhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCCC-----cccccCCCCCCEEEcccC
Q 011101          312 PSSIGR-----AKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGPI-----PHSFGCLSSMQYLNLAMN  377 (493)
Q Consensus       312 p~~l~~-----l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N  377 (493)
                      ...+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|+|++|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            444432     34788888988888864    4666777889999999999887432     222335788999999999


Q ss_pred             CCCCC----cchhhcCCCCCcEEeeeCCcCCCCCc-cc-----cCCCCCCEEEeeCCcCCCC
Q 011101          378 QFYGP----VPEIVCQLPKLVNLSLSYNYFTQVGP-EC-----RKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       378 ~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~-----~~l~~L~~L~L~~N~l~~l  429 (493)
                      .+++.    ++..+..+++|++|+|++|.|++... .+     ...++|++|++++|.|++.
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            88753    56667778899999999998875322 22     2336899999999988753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=2.5e-22  Score=199.08  Aligned_cols=228  Identities=12%  Similarity=0.108  Sum_probs=185.3

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCc-cCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKS-IPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      .+++.|++++|.+.+   ..+. +..+++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus        70 ~~l~~L~l~~n~l~~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQ---PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TTCSEEECTTCEECS---CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ccceEEEcCCccccc---cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            679999999999998   4443 66899999999999999865 778899999999999999999888888899999999


Q ss_pred             EEEcccc-cCCCC-CCcccccc-ccCEEEccCc-cCCCC-ccccccccc-cc-hhhcccC--cCC-CCCchhhhhhhhhH
Q 011101          253 FLDLRFN-SFSGP-VPAEIFYL-DLDVLFLNNN-KFSQN-LPENIGSTG-AL-YVTFANN--EFT-GPIPSSIGRAKYLL  322 (493)
Q Consensus       253 ~L~Ls~n-~l~~~-~p~~~~~~-~L~~L~L~~n-~l~~~-~p~~~~~~~-~l-~L~l~~n--~l~-~~~p~~l~~l~~L~  322 (493)
                      +|+|++| .+++. ++..+... +|++|++++| .+++. ++..+..+. .+ +|++++|  .++ +.++..+..+++|+
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            9999999 67642 45444444 9999999999 88764 566677777 67 9999999  454 45677788899999


Q ss_pred             HHHhcccc-ccCCCcccccCCCCCcEEEecCCC-CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          323 EVLFLNNF-FTGCLPYEIGFLSNSTVFDVGNNR-LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       323 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                      +|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+|++| ++...-..+.  .+|..|++++
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~  302 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINC  302 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESC
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEec
Confidence            99999999 776777889999999999999995 33222236788999999999999 6543333332  3467778999


Q ss_pred             CcCCCCCc
Q 011101          401 NYFTQVGP  408 (493)
Q Consensus       401 N~l~~~~~  408 (493)
                      |++++..+
T Consensus       303 n~l~~~~~  310 (336)
T 2ast_B          303 SHFTTIAR  310 (336)
T ss_dssp             CCSCCTTC
T ss_pred             ccCccccC
Confidence            99999755

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=7.1e-20  Score=195.43  Aligned_cols=248  Identities=22%  Similarity=0.252  Sum_probs=173.8

Q ss_pred             CCCCC-CCCCCCCCCceeec--cCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCC
Q 011101          148 ANTWM-GPDVCNKYKGFVCD--VRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKL  224 (493)
Q Consensus       148 ~~~W~-~~~~C~~w~gv~c~--~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l  224 (493)
                      ...|. ..++| .|.|..|.  ........+++.|++++|+++.    +|..+.  ++|++|++++|+|+. +|.   .+
T Consensus        12 w~~W~~~~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~----lp~~l~--~~L~~L~L~~N~l~~-lp~---~l   80 (622)
T 3g06_A           12 WSAWRRAAPAE-ESRGRAAVVQKMRACLNNGNAVLNVGESGLTT----LPDCLP--AHITTLVIPDNNLTS-LPA---LP   80 (622)
T ss_dssp             HHHHHHTCCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSCCSC----CCSCCC--TTCSEEEECSCCCSC-CCC---CC
T ss_pred             HHHHHhcCCcc-hhccccccCcccccccCCCCcEEEecCCCcCc----cChhhC--CCCcEEEecCCCCCC-CCC---cC
Confidence            45566 34555 88664321  1111112358999999999997    666554  799999999999984 555   57


Q ss_pred             CCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccc-hhhcc
Q 011101          225 KFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFA  303 (493)
Q Consensus       225 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~  303 (493)
                      ++|++|+|++|.|+ .+|.   .+++|++|+|++|.++ .++.  ...+|++|++++|++++ +|..+   ..+ +|+++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~--~l~~L~~L~L~~N~l~~-lp~~l---~~L~~L~Ls  149 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA--LPSGLCKLWIFGNQLTS-LPVLP---PGLQELSVS  149 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC--CCTTCCEEECCSSCCSC-CCCCC---TTCCEEECC
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC--CCCCcCEEECCCCCCCc-CCCCC---CCCCEEECc
Confidence            99999999999997 4555   7899999999999998 4555  34589999999999985 55543   445 89999


Q ss_pred             cCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC-----------------C
Q 011101          304 NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC-----------------L  366 (493)
Q Consensus       304 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----------------l  366 (493)
                      +|.+++ ++..   +.+|+.|++++|.+++ ++   ..+++|+.|++++|.+++ ++..+..                 +
T Consensus       150 ~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~  220 (622)
T 3g06_A          150 DNQLAS-LPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALP  220 (622)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCC
T ss_pred             CCcCCC-cCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCC
Confidence            999985 4443   4578889999999995 55   456889999999999884 4433211                 1


Q ss_pred             CCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCCC
Q 011101          367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQR  433 (493)
Q Consensus       367 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~  433 (493)
                      ++|++|+|++|+|++ +|   ..+++|+.|+|++|+|++++.   .+++|+.|+|++|.|+.+|..+
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l  280 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL  280 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence            445566666666553 33   234566666666666665544   4556666677777666666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.9e-20  Score=169.91  Aligned_cols=176  Identities=15%  Similarity=0.092  Sum_probs=130.7

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|.+|.|....     .....+++.|++++|++++   ..+..+..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus         8 ~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            89999997432     2334578889999988887   555567888889999999988887666667888889999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI  311 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~  311 (493)
                      +|.+++..+..|..+++|++|+|++|.+++..+..+... +|++|+|++|.+.+..+..+..+..+ +|++++|.+.+. 
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-  163 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-  163 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-
Confidence            888886666667888889999999888885444444444 88888888888886555556666666 777777766533 


Q ss_pred             chhhhhhhhhHHHHhccccccCCCcccccCCCC
Q 011101          312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSN  344 (493)
Q Consensus       312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  344 (493)
                            +++|+.|+++.|.++|.+|..++.+..
T Consensus       164 ------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          164 ------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------CCCHHHHHHHHHhCCceeeccCccccC
Confidence                  346677777777777777766655443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.5e-20  Score=198.28  Aligned_cols=189  Identities=22%  Similarity=0.308  Sum_probs=134.4

Q ss_pred             CCCce-eeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCC
Q 011101          159 KYKGF-VCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL  237 (493)
Q Consensus       159 ~w~gv-~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l  237 (493)
                      .|.++ .|..      .+++.|+|++|++++    +|..+  +++|++|+|++|+|+ .+|   ..+++|++|+|++|.|
T Consensus        49 ~~~~l~~C~~------~~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l  112 (571)
T 3cvr_A           49 AVSLLKECLI------NQFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL  112 (571)
T ss_dssp             HHHHHHHHHH------TTCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC
T ss_pred             hhhhcccccc------CCccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC
Confidence            37777 6653      368999999999987    56544  378999999999998 566   4578999999999999


Q ss_pred             CCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhh
Q 011101          238 FGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGR  317 (493)
Q Consensus       238 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~  317 (493)
                      ++ +|. +..  +|++|+|++|.+++ +|.  ...+|++|+|++|.+++ +|.                          .
T Consensus       113 ~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--------------------------~  158 (571)
T 3cvr_A          113 ST-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--------------------------L  158 (571)
T ss_dssp             SC-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--------------------------C
T ss_pred             CC-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--------------------------c
Confidence            76 666 554  89999999999985 666  34488899998888874 332                          2


Q ss_pred             hhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCC-------CEEEcccCCCCCCcchhhcCC
Q 011101          318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM-------QYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                      +++|++|+|++|.+++ +|. |.  ++|+.|+|++|.|+ .+|. |..  +|       ++|+|++|+|+ .+|..+..+
T Consensus       159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            3455566666666664 444 43  67777777777777 5555 443  55       77777777776 456666667


Q ss_pred             CCCcEEeeeCCcCCCC
Q 011101          391 PKLVNLSLSYNYFTQV  406 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~~  406 (493)
                      ++|+.|+|++|.|++.
T Consensus       230 ~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CTTEEEECCSSSCCHH
T ss_pred             CCCCEEEeeCCcCCCc
Confidence            7777777777777664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.6e-20  Score=187.50  Aligned_cols=234  Identities=15%  Similarity=0.106  Sum_probs=112.2

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccC-cccCCCCCCCE-EE
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIP-KMTSKLKFLYE-LD  231 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~-L~  231 (493)
                      .|..|.|....     .....+++.|+|++|+|+.   .-+..|..+++|++|+|++|++.+.++ ..|.++++|++ ++
T Consensus        10 ~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            56666665221     1223455566666666555   222345556666666666666544443 24455555543 34


Q ss_pred             CcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccc-cccCEEEccC-ccCCCCccccccccccchhhcccCcCCC
Q 011101          232 VSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY-LDLDVLFLNN-NKFSQNLPENIGSTGALYVTFANNEFTG  309 (493)
Q Consensus       232 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~-n~l~~~~p~~~~~~~~l~L~l~~n~l~~  309 (493)
                      +++|+++...+..|.++++|++|++++|.+....+..+.. .++..|++.+ +.+....                     
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~---------------------  145 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---------------------  145 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC---------------------
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc---------------------
Confidence            4455555555555555666666666666655322222211 1444555543 2332211                     


Q ss_pred             CCchhhhhh-hhhHHHHhccccccCCCcccccCCCCCcEEEecC-CCCCCCCc-ccccCCCCCCEEEcccCCCCCCcchh
Q 011101          310 PIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGN-NRLTGPIP-HSFGCLSSMQYLNLAMNQFYGPVPEI  386 (493)
Q Consensus       310 ~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~  386 (493)
                        ...+..+ ..++.|++++|+++. ++.......+|++|++++ |.++ .+| +.|..+++|++|+|++|+|+. +|..
T Consensus       146 --~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~  220 (350)
T 4ay9_X          146 --RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY  220 (350)
T ss_dssp             --TTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS
T ss_pred             --ccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cChh
Confidence              1222222 234455555555552 333333444566666653 4444 333 345566666666666666653 3321


Q ss_pred             hcCCCCCcEEeeeCC-cCCCCCccccCCCCCCEEEeeCC
Q 011101          387 VCQLPKLVNLSLSYN-YFTQVGPECRKLIKRKVLDVRMN  424 (493)
Q Consensus       387 l~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~L~~N  424 (493)
                        .+.+|+.|.+.++ .++.++ .+..+++|+.+++.++
T Consensus       221 --~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          221 --GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             --SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             --hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence              1334444444332 233333 4555666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.5e-20  Score=195.58  Aligned_cols=178  Identities=23%  Similarity=0.274  Sum_probs=148.1

Q ss_pred             cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccC
Q 011101          202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNN  281 (493)
Q Consensus       202 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~  281 (493)
                      +|+.|++++|++++ +|..+  +++|++|+|++|.|+ .+|   ..+++|++|+|++|.|++ +|. +.. +|++|+|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence            89999999999986 66655  378999999999997 566   457899999999999985 777 444 899999999


Q ss_pred             ccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcc
Q 011101          282 NKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPH  361 (493)
Q Consensus       282 n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  361 (493)
                      |.+++ +|                       .   .+++|+.|++++|.+++ +|.   .+++|++|+|++|.+++ +|.
T Consensus       130 N~l~~-lp-----------------------~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          130 NQLTM-LP-----------------------E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             SCCSC-CC-----------------------C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             CcCCC-CC-----------------------C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence            98874 22                       2   34678888899999885 665   57899999999999995 777


Q ss_pred             cccCCCCCCEEEcccCCCCCCcchhhcCCCCC-------cEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          362 SFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL-------VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       362 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                       |.  ++|++|+|++|+|+ .+|. +..  +|       +.|+|++|+|+.++..+..+++|+.|+|++|.|++
T Consensus       178 -l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          178 -LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             -hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence             65  89999999999999 6666 554  77       99999999999998888889999999999999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=2.2e-20  Score=186.55  Aligned_cols=199  Identities=17%  Similarity=0.180  Sum_probs=125.2

Q ss_pred             CCccceEEEEcCCCCcCCCCCccc-hhhhCCCcCcE-EEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLS-DFLEKLEDLAI-FHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI  248 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~-~~l~~l~~L~~-L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  248 (493)
                      ....+|+.|+|++|.+.+   .++ ..|..+++|+. +.+.+|+++...+..|..+++|++|++++|.++...+..+...
T Consensus        51 ~~l~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~  127 (350)
T 4ay9_X           51 SGFGDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  127 (350)
T ss_dssp             TTCTTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred             cCCCCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence            456889999999999876   555 45788988775 6677899998778899999999999999999987777677778


Q ss_pred             CCCcEEEccc-ccCCCCCCcc-cccc--ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHH
Q 011101          249 KNLTFLDLRF-NSFSGPVPAE-IFYL--DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEV  324 (493)
Q Consensus       249 ~~L~~L~Ls~-n~l~~~~p~~-~~~~--~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L  324 (493)
                      .++..|++.+ +.+. .++.. +...  .+++|+|++|++....+..+......++++.+|+..+.+|            
T Consensus       128 ~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~------------  194 (350)
T 4ay9_X          128 LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP------------  194 (350)
T ss_dssp             SSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC------------
T ss_pred             chhhhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC------------
Confidence            8899999976 4565 55543 3332  6889999999987433333333233355554322222232            


Q ss_pred             HhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          325 LFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       325 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                                 +..|..+++|++|||++|+|+ .+|..  .+.+|+.|.+.++.--..+|. +..+++|+.+++++
T Consensus       195 -----------~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          195 -----------NDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             -----------TTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             -----------HHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence                       223455555555555555555 33321  123344444333322223442 44555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=8.9e-20  Score=177.33  Aligned_cols=174  Identities=26%  Similarity=0.290  Sum_probs=91.0

Q ss_pred             hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccc-cccC
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFY-LDLD  275 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~  275 (493)
                      +..+++|+.|++++|.++..  ..+..+++|++|++++|.+++..+  +..+++|++|+|++|.+++ ++. +.. .+|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence            34456666666666666533  235666666666666666654332  5666666666666666652 332 222 2555


Q ss_pred             EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCC
Q 011101          276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRL  355 (493)
Q Consensus       276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  355 (493)
                      +|++++|++.+                                               .  ..+..+++|++|++++|++
T Consensus       116 ~L~L~~n~i~~-----------------------------------------------~--~~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A          116 SLSLEHNGISD-----------------------------------------------I--NGLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             EEECTTSCCCC-----------------------------------------------C--GGGGGCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCC-----------------------------------------------C--hhhcCCCCCCEEEccCCcC
Confidence            55555555432                                               1  1233344555555555555


Q ss_pred             CCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101          356 TGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       356 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      ++.  ..+..+++|++|+|++|++++..+  +..+++|+.|++++|+|++++ .+..+++|+.|++++|.++..|
T Consensus       147 ~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          147 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             Ccc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccCCc
Confidence            532  344555555555555555554332  455555555555555555542 3455555555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=9e-20  Score=168.12  Aligned_cols=190  Identities=15%  Similarity=0.087  Sum_probs=148.6

Q ss_pred             eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      -+.+++++++++.    +|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus         9 ~~~v~c~~~~l~~----~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            9 GTTVECYSQGRTS----VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TTEEECCSSCCSS----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCccC----CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            4578899998887    55433  46899999999999977777789999999999999999877667788999999999


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      |++|.+++..+..+... +|++|+|++|++.+..                       +..+..+++|++|++++|.+++.
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------~~~~~~l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP-----------------------DGVFDKLTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------TTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC-----------------------HhHhccCCcCCEEECCCCcccee
Confidence            99999985444444444 8999999888887432                       23355667788888888888866


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      .+..|..+++|++|+|++|.+.+       .+++|++|+++.|+++|.+|.+++.++.    ++..|...+
T Consensus       140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~  199 (208)
T 2o6s_A          140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSG  199 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTC
T ss_pred             CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCC
Confidence            66668889999999999998774       3467899999999999999988876654    444454433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2e-19  Score=191.58  Aligned_cols=191  Identities=20%  Similarity=0.223  Sum_probs=115.0

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      ..+..+++..+.+..   .+  .+..|.+|+.|++++|.+.. ++ .+..+++|++|+|++|.|++..+  +..+++|++
T Consensus        21 ~~l~~l~l~~~~i~~---~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           21 AETIKDNLKKKSVTD---AV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHHTTCSCTTS---EE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHHhccCCCccc---cc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            344455566666555   22  24566777777777777764 32 46777777777777777765433  667777777


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      |+|++|.+.+ ++. +... +|++|+|++|.+.+                        + ..+..+++|+.|+|++|.++
T Consensus        92 L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~~------------------------l-~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           92 LFLDENKIKD-LSS-LKDLKKLKSLSLEHNGISD------------------------I-NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             EECCSSCCCC-CTT-STTCTTCCEEECTTSCCCC------------------------C-GGGGGCTTCSEEECCSSCCC
T ss_pred             EECcCCCCCC-Chh-hccCCCCCEEEecCCCCCC------------------------C-ccccCCCccCEEECCCCccC
Confidence            7777777763 332 2222 66666666666542                        1 12445566666666666666


Q ss_pred             CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101          333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      +.  ..+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.|++.  ..+..+++|+.|+|++|.+++.
T Consensus       145 ~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          145 DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            43  455666666666666666664333  56666666666666666643  2456666666666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=3.1e-20  Score=202.51  Aligned_cols=258  Identities=19%  Similarity=0.206  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCCCCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCc
Q 011101          126 IQLAFKVIQRFKKRITYDPQGIANTWM-GPDVCNKYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLA  204 (493)
Q Consensus       126 ~~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~  204 (493)
                      ...+++++..+......+.+.....|. ....+..|.++.+..      .+++.|+|.++.+..    .+..+....+|+
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~~l~L~~n~~~~----~~~~~l~~l~Ls  199 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST------PLTPKIELFANGKDE----ANQALLQHKKLS  199 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC------CccceEEeeCCCCCc----chhhHhhcCccC
Confidence            344456667776666555455556775 333333788777754      468999999998877    333222222222


Q ss_pred             -----EEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEE
Q 011101          205 -----IFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLF  278 (493)
Q Consensus       205 -----~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~  278 (493)
                           .+++..|.+. ..+..|..+.+|++|+|++|.+. .++..+..+++|++|+|++|.|+ .+|..+..+ +|++|+
T Consensus       200 ~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  276 (727)
T 4b8c_D          200 QYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLD  276 (727)
T ss_dssp             -----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEE
T ss_pred             cccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEe
Confidence                 2223333333 34556667777777777777775 55555666777777777777776 666655544 666666


Q ss_pred             ccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101          279 LNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP  358 (493)
Q Consensus       279 L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  358 (493)
                      |++|.|+                        .+|..|+.+.+|++|+|++|.++ .+|..|+.+++|++|+|++|.|++.
T Consensus       277 Ls~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          277 LSHNRLT------------------------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CTTSCCS------------------------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CcCCcCC------------------------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence            6666665                        44556667777777777777776 6677788888888888888888877


Q ss_pred             CcccccCCCC-CCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC--------cCCCCCc-cccCCCCCCEEEeeCCcCC
Q 011101          359 IPHSFGCLSS-MQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN--------YFTQVGP-ECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       359 ~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~~-~~~~l~~L~~L~L~~N~l~  427 (493)
                      +|..+..+.. +..|+|++|.+++.+|.      .|+.|+++.|        .|.+... .+..+.++....+++|.+.
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred             ChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            7776654322 23467888888877664      3455566665        2222221 3345556666777777664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=9.4e-19  Score=186.44  Aligned_cols=169  Identities=20%  Similarity=0.295  Sum_probs=93.0

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+|+.|++++|.+..    ++ .+..+++|+.|+|++|.+++..+  +..+++|++|+|++|.|++ ++ .+..+++|++
T Consensus        43 ~~L~~L~l~~n~i~~----l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~  113 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS----VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS  113 (605)
T ss_dssp             TTCCCCBCTTCCCCC----CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred             CCCCEEECcCCCCCC----Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence            455666666666554    22 35556666666666666654332  5566666666666666643 22 4556666666


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      |+|++|.+.+ ++......+|+.|+|++|.+.+.                         ..+..+++|+.|+|++|.+.+
T Consensus       114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-------------------------~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-------------------------TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-------------------------GGGGSCTTCSEEECCSSCCCC
T ss_pred             EEecCCCCCC-CccccCCCccCEEECCCCccCCc-------------------------hhhcccCCCCEEECcCCcCCC
Confidence            6666666652 33222222566666666555421                         224445556666666666654


Q ss_pred             CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 011101          334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYG  381 (493)
Q Consensus       334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  381 (493)
                      ..+  +..+++|+.|+|++|.|++ + ..+..+++|+.|+|++|.+++
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             chh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence            433  5566666666666666653 2 245556666666666666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=6.4e-22  Score=209.57  Aligned_cols=190  Identities=18%  Similarity=0.130  Sum_probs=130.4

Q ss_pred             CCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEccccc-------------CCCCCCcccccc-ccCEEE-ccCccCCC
Q 011101          222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNS-------------FSGPVPAEIFYL-DLDVLF-LNNNKFSQ  286 (493)
Q Consensus       222 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~~-~L~~L~-L~~n~l~~  286 (493)
                      ..+++|+.|+|++|.++ .+|..++++++|+.|++++|.             +.+.+|..+... +|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56777888888888874 677788888888888876664             222222222222 344443 3332221 


Q ss_pred             Cccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccC
Q 011101          287 NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC  365 (493)
Q Consensus       287 ~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  365 (493)
                                .+ .+.+.+|.+...     . ...|+.|+|++|.+++ +|. |+.+++|+.|+|++|.|+ .+|..|..
T Consensus       424 ----------~L~~l~l~~n~i~~l-----~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKM-----E-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHH-----H-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ----------hhhhhhhhccccccc-----C-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                      11 223333333210     0 1236678888888885 565 888888888888888888 78888888


Q ss_pred             CCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC--CccccCCCCCCEEEeeCCcCCCCCCCCC
Q 011101          366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV--GPECRKLIKRKVLDVRMNCILDLPNQRS  434 (493)
Q Consensus       366 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~~  434 (493)
                      +++|++|+|++|+|++ +| .+..+++|+.|+|++|+|+++  +..+..+++|+.|+|++|.|+++|....
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence            8888888888888885 56 788888888888888888887  5678888888888888888888876543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.7e-18  Score=168.21  Aligned_cols=171  Identities=21%  Similarity=0.287  Sum_probs=121.4

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++++|.+..    ++ .+..+++|++|++++|++++..+  +.++++|++|++++|.+++ + ..+..+++|+
T Consensus        45 l~~L~~L~l~~~~i~~----~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS----VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHTCCEEECTTSCCCC----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             cCcccEEEccCCCccc----Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            4679999999999987    44 48899999999999999997544  9999999999999999975 3 4589999999


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      +|+|++|.+++ ++......+|++|++++|.+.+.                         ..+                 
T Consensus       116 ~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-------------------------~~l-----------------  152 (291)
T 1h6t_A          116 SLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-------------------------TVL-----------------  152 (291)
T ss_dssp             EEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-------------------------GGG-----------------
T ss_pred             EEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-------------------------hhh-----------------
Confidence            99999999984 44322333888888888887631                         122                 


Q ss_pred             CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101          333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                             ..+++|++|++++|.+++..+  +..+++|++|+|++|.|++ ++ .+..+++|+.|++++|+++..
T Consensus       153 -------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          153 -------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             -------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             -------ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence                   334555555555555553222  5555566666666666553 22 255566666666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=4.6e-18  Score=159.22  Aligned_cols=156  Identities=15%  Similarity=0.094  Sum_probs=120.4

Q ss_pred             CCCCCCCCCCCCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCC
Q 011101          149 NTWMGPDVCNKYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSK  223 (493)
Q Consensus       149 ~~W~~~~~C~~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~  223 (493)
                      ..|.+...| +|.+|.|....     .....+++.|+|++|.+++   ..+..+..+++|++|+|++|+|+...+..|..
T Consensus        11 ~~~~~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           11 AACPSQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             CCCCTTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCCCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence            455677888 99999997432     2345678888888888888   66777888888888888888887665566788


Q ss_pred             CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhh
Q 011101          224 LKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVT  301 (493)
Q Consensus       224 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~  301 (493)
                      +++|++|+|++|.|++..+..|..+++|++|+|++|.++ .+|..+... +|++|+|++|++.+..+..+..+..+ +|+
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            888888888888888766667788888888888888888 677766555 88888888888886555566666666 777


Q ss_pred             cccCcCCC
Q 011101          302 FANNEFTG  309 (493)
Q Consensus       302 l~~n~l~~  309 (493)
                      +++|.+..
T Consensus       166 l~~N~~~c  173 (229)
T 3e6j_A          166 LFGNPWDC  173 (229)
T ss_dssp             CTTSCBCT
T ss_pred             eeCCCccC
Confidence            77777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=3.8e-18  Score=163.29  Aligned_cols=169  Identities=20%  Similarity=0.249  Sum_probs=89.6

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.++++++.+++    ++ .+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+  +..+++|++
T Consensus        19 ~~l~~l~l~~~~i~~----~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTD----LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHTCSCTTS----EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHhcCCCccc----cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            345555666666655    23 35566666666666666653 33 45666666666666666654332  566666666


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccC
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTG  333 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  333 (493)
                      |+|++|.+++ ++.... .+|++|+|++|++++                                               
T Consensus        90 L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-----------------------------------------------  120 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-----------------------------------------------  120 (263)
T ss_dssp             EECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-----------------------------------------------
T ss_pred             EECCCCccCC-cCcccc-CcccEEEccCCccCC-----------------------------------------------
Confidence            6666666652 332222 455555555554431                                               


Q ss_pred             CCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101          334 CLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       334 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                       + ..+..+++|++|+|++|++++ ++ .+..+++|++|+|++|++++.  ..+..+++|+.|++++|.++..
T Consensus       121 -~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          121 -T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             1 123344555555555555553 22 345555555555555555533  3445555555555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.6e-18  Score=173.70  Aligned_cols=174  Identities=23%  Similarity=0.195  Sum_probs=105.5

Q ss_pred             CEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccc-cc-ccCEEEccCccCCCCccccccccccchhhcccC
Q 011101          228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF-YL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANN  305 (493)
Q Consensus       228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n  305 (493)
                      +.++++++.++ .+|..+.  ..++.|+|++|.|++..+..+. .. +|++|+|++|++.+..+..+             
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------------   84 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-------------   84 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-------------
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-------------
Confidence            57888888885 4665543  4588889988888854444443 33 88888888888875444444             


Q ss_pred             cCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcch
Q 011101          306 EFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE  385 (493)
Q Consensus       306 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  385 (493)
                                ..+++|++|+|++|++++..+..|..+.+|++|+|++|.|++..+..|..+++|++|+|++|+|++....
T Consensus        85 ----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           85 ----------VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             ----------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             ----------cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence                      4445555555555555544444555666666666666666655555666666666666666666643333


Q ss_pred             hh---cCCCCCcEEeeeCCcCCCCCc-cccCCCC--CCEEEeeCCcCC
Q 011101          386 IV---CQLPKLVNLSLSYNYFTQVGP-ECRKLIK--RKVLDVRMNCIL  427 (493)
Q Consensus       386 ~l---~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~--L~~L~L~~N~l~  427 (493)
                      .+   ..+++|+.|+|++|+|++++. .+..++.  |+.|+|++|.+.
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            33   345666666666666666543 3444444  355666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=4.5e-18  Score=158.26  Aligned_cols=153  Identities=23%  Similarity=0.129  Sum_probs=117.9

Q ss_pred             cEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +.+++++|.++ .+|..+. ..+++|+|++|.+.+..+                      ...|..+++|++|+|++|.+
T Consensus        14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~----------------------~~~~~~l~~L~~L~L~~N~i   69 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEA----------------------TGIFKKLPQLRKINFSNNKI   69 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECC----------------------CCCGGGCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCc----------------------hhhhccCCCCCEEECCCCcC
Confidence            46777777776 4565432 245677777777664322                      13356777788888888888


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-ccc
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG-PEC  410 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~  410 (493)
                      ++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|+|++++ ..+
T Consensus        70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence            8766677888888999999999988777777888889999999999988777888888889999999999998874 477


Q ss_pred             cCCCCCCEEEeeCCcCCC
Q 011101          411 RKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       411 ~~l~~L~~L~L~~N~l~~  428 (493)
                      ..+++|+.|+|++|.+..
T Consensus       150 ~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTCTTCCEEECCSCCEEC
T ss_pred             cCCCCCCEEEecCcCCcC
Confidence            888889999999988765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=5.6e-18  Score=157.65  Aligned_cols=152  Identities=19%  Similarity=0.158  Sum_probs=120.1

Q ss_pred             cEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       252 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +.++++++.++ .+|..+. .+|++|+|++|.+.+                       ..+..|..+++|++|+|++|.+
T Consensus        14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~-----------------------i~~~~~~~l~~L~~L~Ls~N~i   68 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKV-----------------------IPPGAFSPYKKLRRIDLSNNQI   68 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCE-----------------------ECTTSSTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCC-----------------------cCHhHhhCCCCCCEEECCCCcC
Confidence            46777777777 5665443 467777777777663                       2334556677788888888888


Q ss_pred             cCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cc
Q 011101          332 TGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-EC  410 (493)
Q Consensus       332 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~  410 (493)
                      ++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+++++ .+
T Consensus        69 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           69 SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence            87778888889999999999999985555567888999999999999998888888889999999999999998866 57


Q ss_pred             cCCCCCCEEEeeCCcCCC
Q 011101          411 RKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       411 ~~l~~L~~L~L~~N~l~~  428 (493)
                      ..+++|+.|+|++|.+..
T Consensus       149 ~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTCTTCCEEECCSSCEEC
T ss_pred             hCCCCCCEEEeCCCCcCC
Confidence            888999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=4.3e-18  Score=170.64  Aligned_cols=175  Identities=21%  Similarity=0.152  Sum_probs=115.1

Q ss_pred             EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccC-CCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTS-KLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      +.+++++++++.    +|..+.  ..++.|+|++|+|++..+..|. ++.+|++|+|++|.|++..+..|.++++|++|+
T Consensus        21 ~~l~c~~~~l~~----iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLPN----VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCSS----CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCc----cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            478999999987    665543  4689999999999987777777 899999999999999887778899999999999


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      |++|.+++..+..+... +|++|+|++|++.+.                       .+..|..+.+|++|+|++|.+++.
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-----------------------~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-----------------------DRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------------------CTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE-----------------------CHHHhCCcccCCEEECCCCcCCee
Confidence            99999884444444443 777777777776531                       223344455555555555555532


Q ss_pred             Ccccc---cCCCCCcEEEecCCCCCCCCcccccCCCC--CCEEEcccCCCC
Q 011101          335 LPYEI---GFLSNSTVFDVGNNRLTGPIPHSFGCLSS--MQYLNLAMNQFY  380 (493)
Q Consensus       335 ~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~  380 (493)
                      ....|   ..+++|+.|+|++|.|++..+..+..++.  |+.|+|++|.+.
T Consensus       152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            22222   34555555555555555333334444443  245555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=6.1e-18  Score=157.37  Aligned_cols=153  Identities=25%  Similarity=0.197  Sum_probs=121.9

Q ss_pred             CEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc-cccc-ccCEEEccCccCCCCccccccccccchhhcccC
Q 011101          228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE-IFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANN  305 (493)
Q Consensus       228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n  305 (493)
                      +++++++|.++ .+|..+.  ..+++|+|++|.+++..+.. +... +|++|+|++|.+++..+                
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~----------------   74 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE----------------   74 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT----------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH----------------
Confidence            58999999996 5676553  46799999999999665543 3343 99999999999875333                


Q ss_pred             cCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcch
Q 011101          306 EFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE  385 (493)
Q Consensus       306 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  385 (493)
                             ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+.
T Consensus        75 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           75 -------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             -------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence                   3455666777778888888776677788888899999999998877788888888899999999998877788


Q ss_pred             hhcCCCCCcEEeeeCCcCCCC
Q 011101          386 IVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       386 ~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      .+..+++|+.|+|++|.+...
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECS
T ss_pred             HhcCCCCCCEEEecCcCCcCC
Confidence            888888899999999988764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=5.4e-18  Score=154.87  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             CCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhh
Q 011101          222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVT  301 (493)
Q Consensus       222 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~  301 (493)
                      ..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++                                   
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-----------------------------------   82 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-----------------------------------   82 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-----------------------------------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-----------------------------------
Confidence            45666777777777775 344 4666667777777666544 222                                   


Q ss_pred             cccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCC-CC
Q 011101          302 FANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ-FY  380 (493)
Q Consensus       302 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~  380 (493)
                                  .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|+ ++
T Consensus        83 ------------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~  150 (197)
T 4ezg_A           83 ------------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT  150 (197)
T ss_dssp             ------------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred             ------------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence                        22333444444455555544445556677788888888888886677777888888888888887 55


Q ss_pred             CCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          381 GPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       381 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                       .++ .+..+++|+.|++++|+|+++. .+..+++|+.|++++|+|..
T Consensus       151 -~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          151 -DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             -ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence             444 5777888888888888888765 67778888888888887754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=6.5e-18  Score=157.19  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=121.2

Q ss_pred             CEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCc
Q 011101          228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNE  306 (493)
Q Consensus       228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~  306 (493)
                      +.++++++.++ .+|..+.  .+|++|+|++|.|++..+..+... +|++|+|++|++.+..+                 
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-----------------   73 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-----------------   73 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-----------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-----------------
Confidence            67999999996 5666554  789999999999995555455554 89999999999875433                 


Q ss_pred             CCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchh
Q 011101          307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEI  386 (493)
Q Consensus       307 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  386 (493)
                            ..|..+++|++|+|++|.++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..
T Consensus        74 ------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  147 (220)
T 2v9t_B           74 ------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT  147 (220)
T ss_dssp             ------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence                  44555666777777777777554556778889999999999998777888888899999999999998777777


Q ss_pred             hcCCCCCcEEeeeCCcCCC
Q 011101          387 VCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       387 l~~l~~L~~L~Ls~N~l~~  405 (493)
                      +..+++|+.|+|++|.+..
T Consensus       148 ~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCEEC
T ss_pred             HhCCCCCCEEEeCCCCcCC
Confidence            8888899999999998865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=2.8e-17  Score=153.82  Aligned_cols=154  Identities=26%  Similarity=0.202  Sum_probs=113.0

Q ss_pred             eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      .+.+++++++++.    +|..+.  ++|++|+|++|.|++..+..|..+++|++|+|++|.|+...+..|.++++|++|+
T Consensus        21 ~~~v~c~~~~l~~----ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           21 GTTVDCRSKRHAS----VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TTEEECTTSCCSS----CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEeEccCCCcCc----cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            5678999998887    565443  7889999999999988788888999999999999998766666778888888888


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      |++|.+++..+..+... +|++|+|++|++.                                                .
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------------------------------~  126 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT------------------------------------------------E  126 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------------------------------S
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc------------------------------------------------c
Confidence            88888874333333322 6666666665554                                                2


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV  383 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  383 (493)
                      +|..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+....
T Consensus       127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            3444556677788888888887555566777788888888888877543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=3e-18  Score=163.98  Aligned_cols=173  Identities=20%  Similarity=0.200  Sum_probs=136.9

Q ss_pred             CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEE
Q 011101          199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVL  277 (493)
Q Consensus       199 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L  277 (493)
                      .+.+++.+++++|.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+++ ++. +... +|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEE
Confidence            4566778888888888543  57788899999999998863 44 67888888888888888874 333 3333 67777


Q ss_pred             EccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101          278 FLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG  357 (493)
Q Consensus       278 ~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  357 (493)
                      +|++|++.+                                                ++. +.. .+|++|+|++|++++
T Consensus        91 ~L~~N~l~~------------------------------------------------l~~-~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           91 SVNRNRLKN------------------------------------------------LNG-IPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             ECCSSCCSC------------------------------------------------CTT-CCC-SSCCEEECCSSCCSB
T ss_pred             ECCCCccCC------------------------------------------------cCc-ccc-CcccEEEccCCccCC
Confidence            777776642                                                111 111 789999999999995


Q ss_pred             CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCCC
Q 011101          358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                       ++ .+..+++|++|+|++|+|++. + .+..+++|+.|+|++|+|+++ ..+..+++|+.|++++|.++..|..
T Consensus       121 -~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          121 -TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             -SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             -Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccc
Confidence             44 688999999999999999964 4 688999999999999999998 7788999999999999999988743

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.70  E-value=4.2e-19  Score=189.43  Aligned_cols=254  Identities=16%  Similarity=0.079  Sum_probs=132.8

Q ss_pred             cceEEEEcCCCCcCCCC-CccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCE-----------------------
Q 011101          174 KAVAGVDFNGYRFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYE-----------------------  229 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~-----------------------  229 (493)
                      .+++.|++++|.+++.. -.++..+..+++|++|++++|.+.+ ++..+..+++|++                       
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            56777777777776210 0234445566777777777766543 2233333333333                       


Q ss_pred             ----EECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcc-cccc-c------------------------cCEEEc
Q 011101          230 ----LDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE-IFYL-D------------------------LDVLFL  279 (493)
Q Consensus       230 ----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~-~------------------------L~~L~L  279 (493)
                          |+++++.. ..++..+..+++|++|+|++|.+++..... +... +                        |++|+|
T Consensus       271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence                33333221 334455556667777777777654322211 1111 4                        455555


Q ss_pred             cC-----------ccCCCCcccc-ccccccc-hhhcccCcCCCCCchhhhh-hhhhHHHHhc----cccccCC-----Cc
Q 011101          280 NN-----------NKFSQNLPEN-IGSTGAL-YVTFANNEFTGPIPSSIGR-AKYLLEVLFL----NNFFTGC-----LP  336 (493)
Q Consensus       280 ~~-----------n~l~~~~p~~-~~~~~~l-~L~l~~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----~p  336 (493)
                      ++           |.+++..... ...+..+ +|++..|.+++.....+.. +++|++|+++    .|.+++.     ++
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~  429 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR  429 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence            42           2333211111 1223333 4555555555444444443 5556666664    3444432     22


Q ss_pred             ccccCCCCCcEEEecCCC--CCCCCccccc-CCCCCCEEEcccCCCCC-CcchhhcCCCCCcEEeeeCCcCCCC--Cccc
Q 011101          337 YEIGFLSNSTVFDVGNNR--LTGPIPHSFG-CLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVNLSLSYNYFTQV--GPEC  410 (493)
Q Consensus       337 ~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~--~~~~  410 (493)
                      ..+..+++|++|+|++|.  +++.....+. .+++|++|+|++|.+++ .++..+..+++|++|+|++|.|++.  ...+
T Consensus       430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            224456666666665432  4433333332 36678888888877765 2344456677888888888877643  2233


Q ss_pred             cCCCCCCEEEeeCCcCCCC
Q 011101          411 RKLIKRKVLDVRMNCILDL  429 (493)
Q Consensus       411 ~~l~~L~~L~L~~N~l~~l  429 (493)
                      ..+++|++|+|++|+++..
T Consensus       510 ~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTT
T ss_pred             HhcCccCeeECcCCcCCHH
Confidence            5677888888888876653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=4.2e-19  Score=189.43  Aligned_cols=254  Identities=13%  Similarity=0.050  Sum_probs=150.2

Q ss_pred             ccceEEEEcCCCCcCCCCCc-cchhhhCCCcCcEEEccCCcCCC----ccCcccCCCCCCCEEECcCCCCCCCCcccccC
Q 011101          173 KKAVAGVDFNGYRFNGPDFS-LSDFLEKLEDLAIFHANSNNFTK----SIPKMTSKLKFLYELDVSNNKLFGGFPMEVVN  247 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~i~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  247 (493)
                      ..+++.|+|++|.+++.... +...+..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ ++..+..
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            35788999999988762111 44566788899999999998872    344556678999999999988754 5556666


Q ss_pred             CCCCcEEEcccccC--------------------------CCCCCcccccc-ccCEEEccCccCCCCcc-ccccccccc-
Q 011101          248 IKNLTFLDLRFNSF--------------------------SGPVPAEIFYL-DLDVLFLNNNKFSQNLP-ENIGSTGAL-  298 (493)
Q Consensus       248 l~~L~~L~Ls~n~l--------------------------~~~~p~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~~~~l-  298 (493)
                      +++|++|+++++..                          .+.++..+... +|++|+|++|.+.+... ..+..+..+ 
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            66676666653211                          11334333333 89999999999764333 223344433 


Q ss_pred             hhhcccCcCCCCCchhhhh------------------------------------hhhhHHHHhccccccCCCcccccC-
Q 011101          299 YVTFANNEFTGPIPSSIGR------------------------------------AKYLLEVLFLNNFFTGCLPYEIGF-  341 (493)
Q Consensus       299 ~L~l~~n~l~~~~p~~l~~------------------------------------l~~L~~L~L~~n~l~~~~p~~l~~-  341 (493)
                      +|+++++...+.++..+..                                    +++|++|+++.|.+++.....+.. 
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY  401 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred             EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence            4444422111111122223                                    445555555555554433333333 


Q ss_pred             CCCCcEEEec----CCCCCCC-----CcccccCCCCCCEEEcccCC--CCCCcchhhc-CCCCCcEEeeeCCcCCCC--C
Q 011101          342 LSNSTVFDVG----NNRLTGP-----IPHSFGCLSSMQYLNLAMNQ--FYGPVPEIVC-QLPKLVNLSLSYNYFTQV--G  407 (493)
Q Consensus       342 l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~--~  407 (493)
                      +++|+.|+++    .|.+++.     ++..+..+++|++|+|++|.  +++.....+. .+++|++|+|++|.+++.  .
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            5666666664    4555532     22234456667777776432  4443333333 367788888888887752  2


Q ss_pred             ccccCCCCCCEEEeeCCcCC
Q 011101          408 PECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       408 ~~~~~l~~L~~L~L~~N~l~  427 (493)
                      ..+..+++|++|+|++|.|+
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCB
T ss_pred             HHHhcCcccCeeeccCCCCc
Confidence            23467788888888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=3.4e-17  Score=149.48  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=107.5

Q ss_pred             hhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccC
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLD  275 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~  275 (493)
                      ...+++|++|++++|.++ .++ .+..+++|++|++++|.++.  ...+..+++|++|++++|.+++..+..+... +|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            366789999999999998 455 68999999999999998743  3578899999999999999986556555544 677


Q ss_pred             EEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCC-
Q 011101          276 VLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR-  354 (493)
Q Consensus       276 ~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-  354 (493)
                      +|++++|.+.+.                                               .+..+..+++|++|++++|. 
T Consensus       116 ~L~Ls~n~i~~~-----------------------------------------------~~~~l~~l~~L~~L~L~~n~~  148 (197)
T 4ezg_A          116 LLDISHSAHDDS-----------------------------------------------ILTKINTLPKVNSIDLSYNGA  148 (197)
T ss_dssp             EEECCSSBCBGG-----------------------------------------------GHHHHTTCSSCCEEECCSCTB
T ss_pred             EEEecCCccCcH-----------------------------------------------hHHHHhhCCCCCEEEccCCCC
Confidence            777777766532                                               22333445666666666666 


Q ss_pred             CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC
Q 011101          355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ  405 (493)
Q Consensus       355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  405 (493)
                      ++ .++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+|.+
T Consensus       149 i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          149 IT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            44 444 466666777777777776642 2 45666777777777776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=5.8e-17  Score=176.67  Aligned_cols=196  Identities=19%  Similarity=0.245  Sum_probs=119.9

Q ss_pred             ceEEEEcCCCCcCCCC------CccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCC
Q 011101          175 AVAGVDFNGYRFNGPD------FSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI  248 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~------~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  248 (493)
                      .+..++|+.+.|.+..      ...+..+..+..|+.|+|++|.+. .++..+.++++|++|+|++|.|+ .+|..|.++
T Consensus       192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            4555666666554411      124667888999999999999998 67777779999999999999997 888889999


Q ss_pred             CCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhh-hHHHH
Q 011101          249 KNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKY-LLEVL  325 (493)
Q Consensus       249 ~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~-L~~L~  325 (493)
                      ++|++|+|++|.|+ .+|..+..+ +|++|+|++|.+. .+|..|+.+..+ +|+|++|.+++.+|..+..+.. +..|+
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            99999999999999 788888776 9999999999987 778889998888 9999999999988888876633 34578


Q ss_pred             hccccccCCCcccccCCCCCcEEEecCC--------CCCCCCcccccCCCCCCEEEcccCCCC
Q 011101          326 FLNNFFTGCLPYEIGFLSNSTVFDVGNN--------RLTGPIPHSFGCLSSMQYLNLAMNQFY  380 (493)
Q Consensus       326 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~  380 (493)
                      |++|.+++.+|.      .|+.|++++|        .+.+..+..+..+..+....++.|.+.
T Consensus       348 l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          348 LRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred             hccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            999999987775      4556666666        333333444455666677777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.4e-18  Score=181.00  Aligned_cols=169  Identities=15%  Similarity=0.068  Sum_probs=125.9

Q ss_pred             cCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHH
Q 011101          246 VNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEV  324 (493)
Q Consensus       246 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L  324 (493)
                      ..+++|+.|+|++|.++ .+|..+... +|+.|++++|.....++          ..+..+...+.+|..++.+++|+.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII----------LLMRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH----------HHHHhcccccCCHHHHHHHHhcccC
Confidence            45677888888888886 777777766 77777776654211111          1111122344556666666666666


Q ss_pred             H-hccc-------------cccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCC
Q 011101          325 L-FLNN-------------FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQL  390 (493)
Q Consensus       325 ~-L~~n-------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  390 (493)
                      + ++.|             .+.. ++     ...|+.|+|++|.|++ +|. |..+++|++|+|++|.|+ .+|..++.+
T Consensus       415 ~~l~~n~~~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          415 DPMRAAYLDDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             cchhhcccchhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence            6 4444             3332 11     1359999999999995 776 999999999999999999 789999999


Q ss_pred             CCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCC--CCCCCc
Q 011101          391 PKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL--PNQRSR  435 (493)
Q Consensus       391 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~~~  435 (493)
                      ++|+.|+|++|+|++++ .+..+++|+.|+|++|.|+++  |..+..
T Consensus       486 ~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          486 RCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            99999999999999986 899999999999999999998  665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=1.4e-16  Score=141.45  Aligned_cols=121  Identities=18%  Similarity=0.100  Sum_probs=104.8

Q ss_pred             CCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCc-chhhc
Q 011101          310 PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPV-PEIVC  388 (493)
Q Consensus       310 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~  388 (493)
                      .++..+..+++|++|++++|.+++.  ..+..+++|++|+|++|.+++.++..+..+++|++|+|++|++++.. ...+.
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence            4555567778888899999988865  77889999999999999999778888888999999999999998642 26788


Q ss_pred             CCCCCcEEeeeCCcCCCCCc----cccCCCCCCEEEeeCCcCCCCCCC
Q 011101          389 QLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       389 ~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      .+++|+.|++++|.+++++.    .+..+++|+.|++++|.+..+|+.
T Consensus       118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999999999999999876    688999999999999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=1.8e-16  Score=144.13  Aligned_cols=84  Identities=26%  Similarity=0.294  Sum_probs=34.9

Q ss_pred             hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                      |++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            33333333333333333344444444444444444433333344444444444444444433344444444444444444


Q ss_pred             CcCC
Q 011101          401 NYFT  404 (493)
Q Consensus       401 N~l~  404 (493)
                      |.++
T Consensus       136 N~l~  139 (192)
T 1w8a_A          136 NPFN  139 (192)
T ss_dssp             CCBC
T ss_pred             CCcc
Confidence            4443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=4.8e-16  Score=153.58  Aligned_cols=247  Identities=11%  Similarity=0.055  Sum_probs=131.9

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhC-CCcCcEEEccCCcCC--------------------CccCcccCC--------C
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEK-LEDLAIFHANSNNFT--------------------KSIPKMTSK--------L  224 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~i~--------------------~~~p~~~~~--------l  224 (493)
                      .+++.|+++++ +..   .--..+.. +++|+.|||++|+|.                    ..-...|.+        +
T Consensus        25 ~~l~~L~l~g~-i~~---~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           25 NSITHLTLTGK-LNA---EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHCSEEEEEEE-ECH---HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred             CceeEEEEecc-ccH---HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence            45677777653 221   11123333 667778888777776                    111234555        7


Q ss_pred             CCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc--ccCEEEccCccC----CCCccccccccccc
Q 011101          225 KFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL--DLDVLFLNNNKF----SQNLPENIGSTGAL  298 (493)
Q Consensus       225 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~L~~n~l----~~~~p~~~~~~~~l  298 (493)
                      .+|++|+|.+ .++.....+|.++.+|+.|++++|.+. .++...+..  ++..+.+..+..    .......+..+..+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            7777777777 666555566777777777777777766 333333332  344444333211    10111112122211


Q ss_pred             --hhhcccCcCCCCCchhhh----hhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEE
Q 011101          299 --YVTFANNEFTGPIPSSIG----RAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYL  372 (493)
Q Consensus       299 --~L~l~~n~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  372 (493)
                        .+.+...   +.++..+.    ...++..+.+.++-...........+.+|+.|+|++|+++..-...|.++.+|++|
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence              1111110   01111111    01111111121110000000001136788888888888875555667788888888


Q ss_pred             EcccCCCCCCcchhhcCCCCCc-EEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCCCCC
Q 011101          373 NLAMNQFYGPVPEIVCQLPKLV-NLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       373 ~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      +|.+| ++.+....|.++.+|+ .|++.+ .++.+.. +|..+.+|+.|++++|.++.++.
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            88877 6655566777888888 888877 6776654 67788888888888888887765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=5.7e-15  Score=134.15  Aligned_cols=129  Identities=20%  Similarity=0.241  Sum_probs=88.2

Q ss_pred             EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCc-ccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPK-MTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      +.+++++++++.    +|..+..  +|++|++++|+|++..+. .|..+++|++|+|++|.|++..+..|.++++|++|+
T Consensus        11 ~~l~~s~~~l~~----ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLKE----IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSS----CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcCc----CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            456777777755    5544432  677777777777755443 367777777777777777776677777777777777


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPI  311 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~  311 (493)
                      |++|.+++..+..+... +|++|+|++|++++..+..+..+..+ +|++++|.+.+..
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            77777775555545444 77777777777777667677666666 7777777776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.1e-15  Score=135.68  Aligned_cols=137  Identities=18%  Similarity=0.089  Sum_probs=103.8

Q ss_pred             CCCCcEEEcccccCC-CCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHH
Q 011101          248 IKNLTFLDLRFNSFS-GPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVL  325 (493)
Q Consensus       248 l~~L~~L~Ls~n~l~-~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~  325 (493)
                      .++|++|+|++|.++ +.++..+... +|++|++++|.+.+.                         ..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~   77 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-------------------------SNLPKLPKLKKLE   77 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-------------------------SSCCCCSSCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-------------------------hhhccCCCCCEEE
Confidence            367788888888776 5666665444 777777777776532                         3455566777778


Q ss_pred             hccccccCCCcccccCCCCCcEEEecCCCCCCCC-cccccCCCCCCEEEcccCCCCCCcc---hhhcCCCCCcEEeeeCC
Q 011101          326 FLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPI-PHSFGCLSSMQYLNLAMNQFYGPVP---EIVCQLPKLVNLSLSYN  401 (493)
Q Consensus       326 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N  401 (493)
                      +++|.+.+.++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|
T Consensus        78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            8888877667777777889999999999998532 2678889999999999999986554   47888999999999999


Q ss_pred             cCCCCCcc
Q 011101          402 YFTQVGPE  409 (493)
Q Consensus       402 ~l~~~~~~  409 (493)
                      .+..++.+
T Consensus       158 ~~~~~~~~  165 (168)
T 2ell_A          158 EDQEAPDS  165 (168)
T ss_dssp             TSCBCCSS
T ss_pred             Chhhcccc
Confidence            98887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=2.7e-15  Score=136.41  Aligned_cols=125  Identities=25%  Similarity=0.277  Sum_probs=100.5

Q ss_pred             hhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCC
Q 011101          300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF  379 (493)
Q Consensus       300 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  379 (493)
                      +++++|.++ .+|..+.  .+|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|..+++|++|+|++|+|
T Consensus        15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            344444444 3444332  46778888888887 6678888899999999999999977777888999999999999999


Q ss_pred             CCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCCC
Q 011101          380 YGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       380 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ++..+..|..+++|+.|+|++|+|+.++. .|..+++|+.|++++|.+..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            98777888899999999999999998876 57889999999999998764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=7.3e-15  Score=133.55  Aligned_cols=94  Identities=20%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             chhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCC
Q 011101          312 PSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP  391 (493)
Q Consensus       312 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  391 (493)
                      |..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..++
T Consensus        47 p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (193)
T 2wfh_A           47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS  126 (193)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence            34455555666666666666655556677778888888888888876667788888888888888888865555677788


Q ss_pred             CCcEEeeeCCcCCC
Q 011101          392 KLVNLSLSYNYFTQ  405 (493)
Q Consensus       392 ~L~~L~Ls~N~l~~  405 (493)
                      +|+.|+|++|.+..
T Consensus       127 ~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          127 ALSHLAIGANPLYC  140 (193)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             cccEEEeCCCCeec
Confidence            88888888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=5.7e-17  Score=172.89  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=73.8

Q ss_pred             hhhcccCcCCCCCchhhh-hhhhhHHHHhc--c----ccccCC-----CcccccCCCCCcEEEecCCCCCCCCcccccC-
Q 011101          299 YVTFANNEFTGPIPSSIG-RAKYLLEVLFL--N----NFFTGC-----LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGC-  365 (493)
Q Consensus       299 ~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-  365 (493)
                      +|++..|.+++.....+. .+++|++|+++  +    +.++..     ++..+..+++|++|+|++ .+++.....+.. 
T Consensus       376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~  454 (594)
T 2p1m_B          376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY  454 (594)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred             HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence            445555555543333343 35666777776  2    333311     111245566777777765 555433334433 


Q ss_pred             CCCCCEEEcccCCCCCCcchhh-cCCCCCcEEeeeCCcCCCCCc--cccCCCCCCEEEeeCCcC
Q 011101          366 LSSMQYLNLAMNQFYGPVPEIV-CQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCI  426 (493)
Q Consensus       366 l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l  426 (493)
                      +++|++|+|++|.+++.....+ ..+++|++|+|++|.+++...  .+..+++|+.|++++|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            6777888888777765444444 557778888888887754321  234567788888888766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=2.3e-14  Score=128.17  Aligned_cols=124  Identities=16%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|.++.|....     .....+++.|++++|++++   ..+..+..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            56666665321     1122345555555555554   233334455555555555555554433444555555555555


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS  285 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~  285 (493)
                      +|.+++..+..|..+++|++|+|++|.+++..+..+... +|++|+|++|.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            555544444444455555555555555542222222222 4555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1e-15  Score=133.00  Aligned_cols=106  Identities=19%  Similarity=0.111  Sum_probs=54.5

Q ss_pred             hhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCC-cchhhcCCCCC
Q 011101          315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP-VPEIVCQLPKL  393 (493)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L  393 (493)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            33444445555555554433  4445555555555555555544555444455555555555555532 12445555555


Q ss_pred             cEEeeeCCcCCCCCc----cccCCCCCCEEEee
Q 011101          394 VNLSLSYNYFTQVGP----ECRKLIKRKVLDVR  422 (493)
Q Consensus       394 ~~L~Ls~N~l~~~~~----~~~~l~~L~~L~L~  422 (493)
                      ++|++++|.+++++.    .+..+++|+.|+++
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555555555543    34555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=9.9e-15  Score=130.60  Aligned_cols=112  Identities=15%  Similarity=0.071  Sum_probs=96.1

Q ss_pred             hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEee
Q 011101          319 KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL  398 (493)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  398 (493)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            46788888888888666667788999999999999999666667889999999999999999777777888999999999


Q ss_pred             eCCcCCCCCcc-ccCCCCCCEEEeeCCcCCCCC
Q 011101          399 SYNYFTQVGPE-CRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       399 s~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      ++|+|++++.. +..+++|++|++++|.+....
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999998774 577999999999999988643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=1.1e-14  Score=126.42  Aligned_cols=107  Identities=25%  Similarity=0.314  Sum_probs=53.7

Q ss_pred             cceEEEEcCCCCcC-CCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          174 KAVAGVDFNGYRFN-GPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       174 ~~l~~L~L~~n~l~-~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      .+++.|++++|.++ +   .++..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.++..+..+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            44555555555555 3   3444455555555555555555543  4455555555555555555544454444555555


Q ss_pred             EEEcccccCCCC-CCcccccc-ccCEEEccCccCC
Q 011101          253 FLDLRFNSFSGP-VPAEIFYL-DLDVLFLNNNKFS  285 (493)
Q Consensus       253 ~L~Ls~n~l~~~-~p~~~~~~-~L~~L~L~~n~l~  285 (493)
                      +|++++|.+++. .+..+... +|++|++++|.++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            555555555431 11222222 4444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=5e-16  Score=165.57  Aligned_cols=84  Identities=10%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhh-CCCcCcEEEccCC-cCCCc-cCcccCCCCCCCEEECcCCCCCCCCccccc----
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLE-KLEDLAIFHANSN-NFTKS-IPKMTSKLKFLYELDVSNNKLFGGFPMEVV----  246 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----  246 (493)
                      .+++.|+|+++.+++   .....+. .+++|++|++++| .++.. ++..+.++++|++|+|++|.+++..+..+.    
T Consensus       105 ~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            456777777776665   4444443 5667777777766 34321 333334567777777777766544333332    


Q ss_pred             CCCCCcEEEccccc
Q 011101          247 NIKNLTFLDLRFNS  260 (493)
Q Consensus       247 ~l~~L~~L~Ls~n~  260 (493)
                      .+++|++|+|++|.
T Consensus       182 ~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          182 TYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCCCCEEECTTCC
T ss_pred             cCCcCcEEEecccC
Confidence            45567777777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=3.4e-16  Score=142.97  Aligned_cols=86  Identities=21%  Similarity=0.255  Sum_probs=55.3

Q ss_pred             hhCCCcCcEEEccCCcCCCccCc------ccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccc
Q 011101          197 LEKLEDLAIFHANSNNFTKSIPK------MTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIF  270 (493)
Q Consensus       197 l~~l~~L~~L~L~~n~i~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  270 (493)
                      +.....++.++++.+.+++.++.      .|..+++|++|++++|.+++ ++ .+..+++|++|+|++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45556677777777777766554      66667777777777777754 44 6666777777777777766 4554444


Q ss_pred             cc-ccCEEEccCccCC
Q 011101          271 YL-DLDVLFLNNNKFS  285 (493)
Q Consensus       271 ~~-~L~~L~L~~n~l~  285 (493)
                      .. +|++|++++|++.
T Consensus        91 ~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           91 VADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHCSEEEEEEEECC
T ss_pred             cCCcCCEEECcCCcCC
Confidence            32 5666666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.2e-14  Score=129.97  Aligned_cols=90  Identities=20%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             cccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcch--hhcCCCCCcEEeeeCCcCCCCCcc----cc
Q 011101          338 EIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE--IVCQLPKLVNLSLSYNYFTQVGPE----CR  411 (493)
Q Consensus       338 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~----~~  411 (493)
                      .|..+++|++|+|++|.+++..+..+..+++|++|+|++|+|+ .++.  .+..+++|+.|++++|.++.++..    +.
T Consensus        59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~  137 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY  137 (176)
T ss_dssp             CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH
T ss_pred             ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH
Confidence            4455667777777777777433344466777777777777775 4444  566677777777777777766553    66


Q ss_pred             CCCCCCEEEeeCCcCCC
Q 011101          412 KLIKRKVLDVRMNCILD  428 (493)
Q Consensus       412 ~l~~L~~L~L~~N~l~~  428 (493)
                      .+++|+.||+++|.+..
T Consensus       138 ~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          138 KVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HCTTCSEETTEECCHHH
T ss_pred             HCCccceeCCCcCCHHH
Confidence            67777777777775543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=8.8e-15  Score=144.49  Aligned_cols=242  Identities=9%  Similarity=-0.003  Sum_probs=170.1

Q ss_pred             ccceEEEEcCCCCcC--CCC---C------------ccchhhhC--------CCcCcEEEccCCcCCCccCcccCCCCCC
Q 011101          173 KKAVAGVDFNGYRFN--GPD---F------------SLSDFLEK--------LEDLAIFHANSNNFTKSIPKMTSKLKFL  227 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~--~~~---~------------~~~~~l~~--------l~~L~~L~L~~n~i~~~~p~~~~~l~~L  227 (493)
                      ..+|+.|||++|++.  ...   +            .-...|..        +++|+.|+|.+ +++.+-..+|.+|.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            356888999988887  100   0            11235667        99999999999 8887777889999999


Q ss_pred             CEEECcCCCCCCCCcccccCCCCCcEEEcccccC----CCCCCccccc-cccC-EEEccCccCCCCcccccc----cccc
Q 011101          228 YELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF----SGPVPAEIFY-LDLD-VLFLNNNKFSQNLPENIG----STGA  297 (493)
Q Consensus       228 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l----~~~~p~~~~~-~~L~-~L~L~~n~l~~~~p~~~~----~~~~  297 (493)
                      ++|++++|.++...+.+|.++.++.++.+..+..    ...-...+.. ..|+ .+.+....   .++..+.    ....
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRD  203 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGG
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccc
Confidence            9999999999877788899888888887766322    1111111111 1444 34443322   1222211    0111


Q ss_pred             c-hhhcccCcCCCCCchhh-hhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCC-EEEc
Q 011101          298 L-YVTFANNEFTGPIPSSI-GRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ-YLNL  374 (493)
Q Consensus       298 l-~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L  374 (493)
                      + .+.+.++-.. .....+ ..+.+|+.|+|++|.++..-...|.++.+|+.|+|.+| ++..-...|.++.+|+ .|++
T Consensus       204 ~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          204 INFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             CSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred             cceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence            1 2223322111 111112 23678999999999999766788999999999999998 7766677899999999 9999


Q ss_pred             ccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEe
Q 011101          375 AMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDV  421 (493)
Q Consensus       375 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L  421 (493)
                      .+ .++.+....|.++.+|+.|++++|+++.+.. .|.++++|+.++.
T Consensus       282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            98 7775667889999999999999999999876 7899999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=5.5e-16  Score=141.54  Aligned_cols=63  Identities=19%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             cCCCCCCCEEECcCCCCCCCCcc------cccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC
Q 011101          221 TSKLKFLYELDVSNNKLFGGFPM------EVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS  285 (493)
Q Consensus       221 ~~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~  285 (493)
                      +.....++.++++.+.+++..+.      .|..+++|++|+|++|.+++ ++ .+... +|++|++++|.+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            34445666666666666665554      67777778888887777774 55 33322 6666666666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=2.4e-13  Score=120.86  Aligned_cols=108  Identities=19%  Similarity=0.125  Sum_probs=92.2

Q ss_pred             hHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       321 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                      .+.|++++|.++ .+|..+  ..+|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            356778888887 466555  37899999999999987788899999999999999999977777788999999999999


Q ss_pred             CcCCCCCc-cccCCCCCCEEEeeCCcCCCCCC
Q 011101          401 NYFTQVGP-ECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       401 N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      |+|+++++ .+..+++|+.|+|++|.++....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99999877 58899999999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=3.6e-13  Score=120.18  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             HHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC
Q 011101          322 LEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN  401 (493)
Q Consensus       322 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  401 (493)
                      +.+++++|.+. .+|..+.  .+|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            35667777775 5666553  78999999999999877888999999999999999999766666788999999999999


Q ss_pred             cCCCCCcc-ccCCCCCCEEEeeCCcCCCCCCC
Q 011101          402 YFTQVGPE-CRKLIKRKVLDVRMNCILDLPNQ  432 (493)
Q Consensus       402 ~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~  432 (493)
                      +|+++++. +..+++|+.|+|++|.|...+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            99998774 88899999999999999887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2.5e-13  Score=121.28  Aligned_cols=104  Identities=21%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCC-cCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLE-DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~-~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      .+++.|++++|+++.    ++. +..+. +|++|++++|.+++.  ..|..+++|++|+|++|.|++..+..+..+++|+
T Consensus        19 ~~L~~L~l~~n~l~~----i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV----IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TSCEEEECTTSCCCS----CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCceEEEeeCCCCch----hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            467888888888776    343 34343 788888888888754  5677788888888888887655444457778888


Q ss_pred             EEEcccccCCCCCCc--ccccc-ccCEEEccCccCC
Q 011101          253 FLDLRFNSFSGPVPA--EIFYL-DLDVLFLNNNKFS  285 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~--~~~~~-~L~~L~L~~n~l~  285 (493)
                      +|+|++|.+. .++.  .+... +|++|++++|.+.
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            8888888775 4554  33333 6777777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=1.3e-12  Score=132.41  Aligned_cols=226  Identities=11%  Similarity=0.008  Sum_probs=169.0

Q ss_pred             hhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccccc
Q 011101          195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDL  274 (493)
Q Consensus       195 ~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L  274 (493)
                      .+|... +|+.+.+..+ ++.+-..+|.++ +|+.++|.. .++.....+|.++.+|+.++|++|.++......+...+|
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L  205 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI  205 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence            456664 7999998766 665555677775 699999986 666666678999999999999999988333333444589


Q ss_pred             CEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCC
Q 011101          275 DVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN  353 (493)
Q Consensus       275 ~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  353 (493)
                      +.+.|..+ +......+|.++..+ .+.+..+ +...-..+|.+ .+|+.+.+ .+.++..-...|.++.+|+.+++.+|
T Consensus       206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence            99999854 665556677777666 7777664 44333445555 67888888 44566555678899999999999988


Q ss_pred             CCC-----CCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCCcCC
Q 011101          354 RLT-----GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       354 ~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~  427 (493)
                      .+.     ..-...|.++.+|+.++|.+ .++......|.++.+|+.++|..| ++.+.. +|..+ +|+.+++.+|.+.
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            775     34556788999999999984 576556678889999999999655 777654 67888 9999999999888


Q ss_pred             CCCC
Q 011101          428 DLPN  431 (493)
Q Consensus       428 ~lp~  431 (493)
                      .++.
T Consensus       359 ~l~~  362 (401)
T 4fdw_A          359 QVFE  362 (401)
T ss_dssp             BCCC
T ss_pred             cccc
Confidence            7764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.8e-12  Score=115.10  Aligned_cols=106  Identities=23%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      .+.+++++|+++.    +|..+  .++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus        11 ~~~l~~s~n~l~~----ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           11 GTTVDCSGKSLAS----VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             TTEEECTTSCCSS----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcCc----cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            4678999999987    66555  37899999999999988888999999999999999999877777789999999999


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCCC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQN  287 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~  287 (493)
                      |++|+|++..+..+... +|++|+|++|.+...
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99999995555455554 999999999998743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=2.2e-12  Score=130.56  Aligned_cols=241  Identities=13%  Similarity=0.030  Sum_probs=179.0

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.+++..+ ++.   .-..+|.. .+|+.+.+.. .++..-..+|.+|.+|+.++|++|.++......|. ..+|+.
T Consensus       135 ~~L~~i~l~~~-i~~---I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~  207 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKS---IGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEE  207 (401)
T ss_dssp             CCCSEEECCTT-CCE---ECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSE
T ss_pred             CCccEEEeCCC-ccE---ECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCE
Confidence            35777887765 554   33455666 4799999986 67666667899999999999999999765555666 689999


Q ss_pred             EEcccccCCCCCCcc-cccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccc
Q 011101          254 LDLRFNSFSGPVPAE-IFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFF  331 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~-~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  331 (493)
                      +.|..+ +. .+... +... +|+.+++..| +......+|.+.....+.+ .+.+...-..+|.++.+|+.+.+.+|.+
T Consensus       208 l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          208 VLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             EEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence            999854 65 44443 3344 8999999875 4434445565533336666 4555545567888999999999988876


Q ss_pred             c-----CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCC
Q 011101          332 T-----GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       332 ~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      .     ..-...|.++.+|+.++|. +.++..-...|.++.+|+.|+|..| ++......|.++ +|+.|++++|.+..+
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             cCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence            5     3445788999999999999 4577566678999999999999665 665556788888 999999999998887


Q ss_pred             Cc-cccCCC-CCCEEEeeCCcCCC
Q 011101          407 GP-ECRKLI-KRKVLDVRMNCILD  428 (493)
Q Consensus       407 ~~-~~~~l~-~L~~L~L~~N~l~~  428 (493)
                      .. .|..++ +++.|++..+.+..
T Consensus       361 ~~~~F~~~~~~l~~l~vp~~~~~~  384 (401)
T 4fdw_A          361 FEKVWYGFPDDITVIRVPAESVEK  384 (401)
T ss_dssp             CCSSCCCSCTTCCEEEECGGGHHH
T ss_pred             ccccccCCCCCccEEEeCHHHHHH
Confidence            54 566664 78899988876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=3.6e-12  Score=113.66  Aligned_cols=105  Identities=24%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             eEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 011101          176 VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLD  255 (493)
Q Consensus       176 l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  255 (493)
                      .+.+++++++++.    +|..+.  ++|++|+|++|.|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus        14 ~~~l~~~~n~l~~----iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIRLAS----VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSCCSS----CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCCCc----cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            3679999999986    666553  8999999999999988888999999999999999999876666788999999999


Q ss_pred             cccccCCCCCCcccccc-ccCEEEccCccCCC
Q 011101          256 LRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ  286 (493)
Q Consensus       256 Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~  286 (493)
                      |++|.|++..+..+... +|++|+|++|.+..
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99999995444445544 99999999999873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.2e-11  Score=122.82  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             Hhccc-cccCCCcccccCCCCCcEEEecC-CCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCc
Q 011101          325 LFLNN-FFTGCLPYEIGFLSNSTVFDVGN-NRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY  402 (493)
Q Consensus       325 ~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  402 (493)
                      +++++ .++ .+|. |..+++|++|+|++ |.|++..+..|..+.+|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44444 555 3555 66666777777764 77765555666677777777777777776666666677777777777777


Q ss_pred             CCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          403 FTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       403 l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      |+++++.+.....|+.|+|++|.|..
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCccC
Confidence            77666543333337777777776664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=2.1e-11  Score=120.89  Aligned_cols=103  Identities=18%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             EEcCCC-CcCCCCCccchhhhCCCcCcEEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101          179 VDFNGY-RFNGPDFSLSDFLEKLEDLAIFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL  256 (493)
Q Consensus       179 L~L~~n-~l~~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  256 (493)
                      ++++++ +++.    +|. +..+++|+.|+|++ |.|++..+..|.++.+|++|+|++|+|++..+..|.++++|++|+|
T Consensus        13 v~~~~~n~l~~----ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           13 LRCTRDGALDS----LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             EECCSSCCCTT----TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEcCCCCCCCc----cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            355555 6776    788 99999999999996 9999877788999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccccccCEEEccCccCCC
Q 011101          257 RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ  286 (493)
Q Consensus       257 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  286 (493)
                      ++|+|++..+..+....|++|+|.+|.+..
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            999999544444555589999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=1.1e-13  Score=138.69  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             ccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC----cchhhcCCCCCcEEeeeCCcCCCC
Q 011101          339 IGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP----VPEIVCQLPKLVNLSLSYNYFTQV  406 (493)
Q Consensus       339 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  406 (493)
                      +...++|++|+|++|.|++.    +...+...++|++|+|++|.|++.    +...+...++|++|||++|.|++.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            34556677777777777632    244455666777777777777643    223344557777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=5.2e-13  Score=133.89  Aligned_cols=159  Identities=14%  Similarity=0.054  Sum_probs=107.4

Q ss_pred             CCCCcEEEcccccCCCCCCccccc------cccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhh
Q 011101          248 IKNLTFLDLRFNSFSGPVPAEIFY------LDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYL  321 (493)
Q Consensus       248 l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L  321 (493)
                      +..|++|+|++|.++......+..      .+|++|+|++|.+.......+                      ...+.+|
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l----------------------~~~L~~L  128 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL----------------------LPVFLRA  128 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT----------------------HHHHHTE
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH----------------------HHHHHhc
Confidence            356778888888776432222211      267777777777653221111                      1223455


Q ss_pred             HHHHhccccccCCCcccc-----cCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCCc----chhhc
Q 011101          322 LEVLFLNNFFTGCLPYEI-----GFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGPV----PEIVC  388 (493)
Q Consensus       322 ~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~  388 (493)
                      ++|+|++|.++......+     ....+|++|+|++|.|+..    +...+..+++|++|+|++|.|++..    ...+.
T Consensus       129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence            666666666653322222     2457899999999999742    4445577899999999999997532    45567


Q ss_pred             CCCCCcEEeeeCCcCCCCC-----ccccCCCCCCEEEeeCCcCCC
Q 011101          389 QLPKLVNLSLSYNYFTQVG-----PECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       389 ~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ..++|+.|+|++|.|++..     ..+...++|++|+|++|.|+.
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            7889999999999998642     245667899999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=6.4e-10  Score=110.66  Aligned_cols=83  Identities=16%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             CCCCCcEEEecCCCCCCCCccccc---CCCCCCEEEcccCCCCCCc----chhhcCCCCCcEEeeeCCcCCCCC-ccccC
Q 011101          341 FLSNSTVFDVGNNRLTGPIPHSFG---CLSSMQYLNLAMNQFYGPV----PEIVCQLPKLVNLSLSYNYFTQVG-PECRK  412 (493)
Q Consensus       341 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~  412 (493)
                      .+++|++|+|++|.+.+.....+.   .+++|++|+|+.|.+++..    ...+..+++|+.|+|++|.|+... ..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            467899999988888743332222   4678999999999887643    223345688999999999887632 12322


Q ss_pred             -CCCCCEEEeeCCc
Q 011101          413 -LIKRKVLDVRMNC  425 (493)
Q Consensus       413 -l~~L~~L~L~~N~  425 (493)
                       +  ...++++.|+
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3568888886

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.68  E-value=4.8e-08  Score=98.47  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=128.1

Q ss_pred             hhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccccc
Q 011101          195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDL  274 (493)
Q Consensus       195 ~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L  274 (493)
                      .+|..+.+|+.+.+..+. ...-...|.++.+|+.+++..+ ++......|.++..|+.+.+..+... .....+...+|
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l  232 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV  232 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence            346666777777775443 2233455667777777777655 33344456666777776666554432 11222223366


Q ss_pred             CEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCC
Q 011101          275 DVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN  353 (493)
Q Consensus       275 ~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  353 (493)
                      +.+.+..+. .......+..+..+ .+.+..+... .....+..+..++.+.+..+.+.   ...|..+.+|+.+.+.++
T Consensus       233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred             ceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc
Confidence            666664332 21222233333333 3333333221 22334455555555444443322   245677888888888765


Q ss_pred             CCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCCCCEEEeeCC
Q 011101          354 RLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIKRKVLDVRMN  424 (493)
Q Consensus       354 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N  424 (493)
                       ++..-...|.++.+|+.++|..+ ++.....+|.++.+|+.+++..| ++.+.. +|.++.+|+.+++..+
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence             55344567888888998888654 55445667888888999888776 766644 6788888998888754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=4.4e-09  Score=104.61  Aligned_cols=181  Identities=13%  Similarity=0.097  Sum_probs=107.0

Q ss_pred             CcCcEEEccCCcCCC-c-------cCcccCCCCCCCEEECcCCCCC---------CCCcccccCCCCCcEEEcccccCCC
Q 011101          201 EDLAIFHANSNNFTK-S-------IPKMTSKLKFLYELDVSNNKLF---------GGFPMEVVNIKNLTFLDLRFNSFSG  263 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~-~-------~p~~~~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~  263 (493)
                      ..++.|.+....+.+ .       +..+...+++|+.|.+..+...         +.+...+..+++|+.|+|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            467788887665542 1       1233455778888888665331         123344456677777777766311 


Q ss_pred             CCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCC
Q 011101          264 PVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLS  343 (493)
Q Consensus       264 ~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  343 (493)
                      .++. +...+|+.|+|..|.+...                          .      ++.|.             ...++
T Consensus       186 ~l~~-~~~~~L~~L~L~~~~l~~~--------------------------~------l~~l~-------------~~~lp  219 (362)
T 2ra8_A          186 SIGK-KPRPNLKSLEIISGGLPDS--------------------------V------VEDIL-------------GSDLP  219 (362)
T ss_dssp             BCCS-CBCTTCSEEEEECSBCCHH--------------------------H------HHHHH-------------HSBCT
T ss_pred             eecc-ccCCCCcEEEEecCCCChH--------------------------H------HHHHH-------------HccCC
Confidence            2222 2233666666655444310                          0      01110             11456


Q ss_pred             CCcEEEecC--CCCCCC-----Ccccc--cCCCCCCEEEcccCCCCCCcchhhc---CCCCCcEEeeeCCcCCCC-----
Q 011101          344 NSTVFDVGN--NRLTGP-----IPHSF--GCLSSMQYLNLAMNQFYGPVPEIVC---QLPKLVNLSLSYNYFTQV-----  406 (493)
Q Consensus       344 ~L~~L~Ls~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~-----  406 (493)
                      +|+.|+|+.  |...+.     +...+  ..+++|++|+|++|.+.+.....+.   .+++|++|+|+.|.|++.     
T Consensus       220 ~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L  299 (362)
T 2ra8_A          220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL  299 (362)
T ss_dssp             TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred             CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence            777777753  221111     11222  2478999999999998754444443   478999999999999873     


Q ss_pred             CccccCCCCCCEEEeeCCcCCC
Q 011101          407 GPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       407 ~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ...+..+++|+.|+|++|.|+.
T Consensus       300 ~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          300 LDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HTTHHHHTTCSEEECCSBBCCH
T ss_pred             HhhcccCCcceEEECCCCcCCH
Confidence            2234668999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.62  E-value=2.8e-07  Score=92.81  Aligned_cols=56  Identities=11%  Similarity=-0.039  Sum_probs=33.5

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSN  234 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~  234 (493)
                      .+|+.+.|.. .++.   .-..+|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..
T Consensus        71 ~~L~~i~lp~-~i~~---I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           71 RKVTEIKIPS-TVRE---IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             TTEEEEECCT-TCCE---ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CCceEEEeCC-CccC---cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence            4677777753 3444   33456777777777777644 4433345566666666655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.61  E-value=1.8e-07  Score=94.26  Aligned_cols=85  Identities=7%  Similarity=0.047  Sum_probs=42.7

Q ss_pred             ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCC
Q 011101          337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIK  415 (493)
Q Consensus       337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~  415 (493)
                      ..|.++.+|+.+.+. +.++..-...|.++.+|+.++|..+ ++.....+|.++.+|+.+.|..+ ++.+.. +|.++.+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            344455555555553 2333233344555556666665543 33233445555566666666433 444433 4555666


Q ss_pred             CCEEEeeCC
Q 011101          416 RKVLDVRMN  424 (493)
Q Consensus       416 L~~L~L~~N  424 (493)
                      |+.+++.+|
T Consensus       359 L~~i~~~~~  367 (394)
T 4gt6_A          359 LNNIEYSGS  367 (394)
T ss_dssp             CCEEEESSC
T ss_pred             CCEEEECCc
Confidence            666665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.53  E-value=2.6e-07  Score=93.04  Aligned_cols=108  Identities=11%  Similarity=0.013  Sum_probs=72.1

Q ss_pred             hhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCC
Q 011101          314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKL  393 (493)
Q Consensus       314 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  393 (493)
                      .|.++.+|+.+.+. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++.....+|.++.+|
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            34455566666554 3344344567889999999999865 55455678999999999999755 665667889999999


Q ss_pred             cEEeeeCCcCCCCCccccCCCCCCEEEeeCCcC
Q 011101          394 VNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCI  426 (493)
Q Consensus       394 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l  426 (493)
                      +.+++.++....  ..+..+.+|+.+.+..|.+
T Consensus       360 ~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          360 NNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             CEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            999999886432  3567778899888877654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=9.1e-09  Score=92.35  Aligned_cols=114  Identities=13%  Similarity=0.044  Sum_probs=82.8

Q ss_pred             hhhhhhhhHHHHhccc-cccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC--
Q 011101          314 SIGRAKYLLEVLFLNN-FFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP--  382 (493)
Q Consensus       314 ~l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~--  382 (493)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...++|++|+|++|.|++.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444566777777777 66532    234456678899999999998743    344455667899999999999753  


Q ss_pred             --cchhhcCCCCCcEEee--eCCcCCCC-----CccccCCCCCCEEEeeCCcCC
Q 011101          383 --VPEIVCQLPKLVNLSL--SYNYFTQV-----GPECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       383 --~p~~l~~l~~L~~L~L--s~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~  427 (493)
                        +...+....+|++|+|  ++|.|+..     ...+....+|++|+|++|.|.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3455667788999999  88998863     234566788999999999775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=4.7e-08  Score=92.51  Aligned_cols=79  Identities=20%  Similarity=0.168  Sum_probs=55.8

Q ss_pred             cCCCCCcEEEecCCCCCC--CCcccccCCCCCCEEEcccCCCCCCcchhhcCCC--CCcEEeeeCCcCCCCCc-------
Q 011101          340 GFLSNSTVFDVGNNRLTG--PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLP--KLVNLSLSYNYFTQVGP-------  408 (493)
Q Consensus       340 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~~-------  408 (493)
                      .++++|+.|+|++|+|++  .++..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++..+       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456788888888888886  3445666788888888888888754  2233333  78888888888876321       


Q ss_pred             -cccCCCCCCEEE
Q 011101          409 -ECRKLIKRKVLD  420 (493)
Q Consensus       409 -~~~~l~~L~~L~  420 (493)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             256677887775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.35  E-value=7.3e-08  Score=86.39  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=60.9

Q ss_pred             cceEEEEcCCC-CcCCCC-CccchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----Ccc
Q 011101          174 KAVAGVDFNGY-RFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----FPM  243 (493)
Q Consensus       174 ~~l~~L~L~~n-~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  243 (493)
                      ..++.|+|++| .+.... ..+...+...+.|++|+|++|.|...    +...+...+.|++|+|++|.|...    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            34666777776 665411 01234455566677777777766532    223344456677777777766532    234


Q ss_pred             cccCCCCCcEEEc--ccccCCCCCCccccc-----cccCEEEccCccCC
Q 011101          244 EVVNIKNLTFLDL--RFNSFSGPVPAEIFY-----LDLDVLFLNNNKFS  285 (493)
Q Consensus       244 ~l~~l~~L~~L~L--s~n~l~~~~p~~~~~-----~~L~~L~L~~n~l~  285 (493)
                      .+...++|++|+|  ++|.|.......+..     .+|++|+|++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4555566777777  666665332222211     25666666666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.22  E-value=1.4e-05  Score=79.74  Aligned_cols=93  Identities=8%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCC
Q 011101          336 PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLI  414 (493)
Q Consensus       336 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~  414 (493)
                      ...|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++......|.++.+|+.+.+.++.++.+.. .|.++.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            345666777888877665 44344556677778888887654 443344567778888888888887777654 677788


Q ss_pred             CCCEEEeeCCcCCCCCC
Q 011101          415 KRKVLDVRMNCILDLPN  431 (493)
Q Consensus       415 ~L~~L~L~~N~l~~lp~  431 (493)
                      +|+.+.|..+ ++.+..
T Consensus       311 ~L~~i~lp~~-l~~I~~  326 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQV  326 (379)
T ss_dssp             TCCEEECCTT-CCEECT
T ss_pred             CCCEEEcCcc-ccEEHH
Confidence            8888887644 555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=1.3e-07  Score=89.45  Aligned_cols=106  Identities=23%  Similarity=0.159  Sum_probs=72.7

Q ss_pred             HHHhccccccCCCcc-cccCCCCCcE--EEecCCCCCCCCccc----ccCCCCCCEEEcccCCCCC--CcchhhcCCCCC
Q 011101          323 EVLFLNNFFTGCLPY-EIGFLSNSTV--FDVGNNRLTGPIPHS----FGCLSSMQYLNLAMNQFYG--PVPEIVCQLPKL  393 (493)
Q Consensus       323 ~L~L~~n~l~~~~p~-~l~~l~~L~~--L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L  393 (493)
                      .|...+|..++.+.- .|...+.|+.  ++++.|... .++..    ...+++|++|+|++|+|++  .++..+..+++|
T Consensus       120 ~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L  198 (267)
T 3rw6_A          120 IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL  198 (267)
T ss_dssp             HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTC
T ss_pred             HHHhccchhccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCC
Confidence            344455555544332 2444445554  666777543 22222    2467899999999999997  345667789999


Q ss_pred             cEEeeeCCcCCCCCccccCCC--CCCEEEeeCCcCCC-CC
Q 011101          394 VNLSLSYNYFTQVGPECRKLI--KRKVLDVRMNCILD-LP  430 (493)
Q Consensus       394 ~~L~Ls~N~l~~~~~~~~~l~--~L~~L~L~~N~l~~-lp  430 (493)
                      +.|+|++|+|+++ ..+..+.  +|++|+|++|.+++ +|
T Consensus       199 ~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          199 KILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence            9999999999987 3333444  99999999999975 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=2.9e-06  Score=74.58  Aligned_cols=86  Identities=10%  Similarity=-0.003  Sum_probs=63.9

Q ss_pred             CCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCC-CCCCcchhhcCC----CCCcEEeeeCCc-CCCC-CccccCCCC
Q 011101          343 SNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ-FYGPVPEIVCQL----PKLVNLSLSYNY-FTQV-GPECRKLIK  415 (493)
Q Consensus       343 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~-~~~~~~l~~  415 (493)
                      -.|+.||++++.|+..--..+..+++|++|+|++|. |++..-..+..+    ++|++|+|++|. |++. ...+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468899999988886656667788889999999984 775555556654    368999999874 7763 235677888


Q ss_pred             CCEEEeeCCc-CCC
Q 011101          416 RKVLDVRMNC-ILD  428 (493)
Q Consensus       416 L~~L~L~~N~-l~~  428 (493)
                      |+.|+|+++. |++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            9999998863 443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.1e-06  Score=75.58  Aligned_cols=84  Identities=14%  Similarity=0.109  Sum_probs=59.1

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCc-CCCccCcccCCC----CCCCEEECcCCC-CCCCCcccccC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNN-FTKSIPKMTSKL----KFLYELDVSNNK-LFGGFPMEVVN  247 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~  247 (493)
                      .+|+.||++++.++.   .--..+..+++|++|+|++|. |+..--..++.+    ++|++|+|++|. +|+.--..+..
T Consensus        61 ~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             ceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            468888888888876   344557788888888888884 665433445553    368888888874 66544445667


Q ss_pred             CCCCcEEEccccc
Q 011101          248 IKNLTFLDLRFNS  260 (493)
Q Consensus       248 l~~L~~L~Ls~n~  260 (493)
                      +++|++|+|++|.
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            7888888888775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.94  E-value=0.0001  Score=73.32  Aligned_cols=125  Identities=10%  Similarity=0.025  Sum_probs=81.6

Q ss_pred             ccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCCC
Q 011101          337 YEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLIK  415 (493)
Q Consensus       337 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~  415 (493)
                      ..+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++......+.++.+|+.+.+..+ ++.+.. .|..+.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence            44566778888888655 33244567778899999999776 55455567888899999999654 666544 6889999


Q ss_pred             CCEEEeeCCcCCCCCCC-CCchhhcccccCCCCCCCCCCCcccCCCCCCC
Q 011101          416 RKVLDVRMNCILDLPNQ-RSREECGKFFSESKKCPNERSLTLVPCARNRS  464 (493)
Q Consensus       416 L~~L~L~~N~l~~lp~~-~~~~~~~~~~~~~~~c~~~~~~~~~~C~~~~~  464 (493)
                      |+.+.+.++.++.+++. |....-+.-+..+.........-+.+|.+...
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALST  337 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCE
Confidence            99999999989888653 32222222222233333333344455554443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=4.7e-05  Score=68.17  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             ceEEEEcCCC-CcCCCC-CccchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----Cccc
Q 011101          175 AVAGVDFNGY-RFNGPD-FSLSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----FPME  244 (493)
Q Consensus       175 ~l~~L~L~~n-~l~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~  244 (493)
                      .++.|+|+++ +|.... ..+-..+..-+.|+.|+|++|.|...    +.+.+..-+.|++|+|++|.|...    +...
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            3666666664 554311 01234455556666677766666532    223333445666666666666432    2223


Q ss_pred             ccCCCCCcEEEcccc
Q 011101          245 VVNIKNLTFLDLRFN  259 (493)
Q Consensus       245 l~~l~~L~~L~Ls~n  259 (493)
                      +..-+.|++|+|++|
T Consensus       122 L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTTCCCSEEECCCC
T ss_pred             HhhCCceeEEECCCC
Confidence            344455666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00038  Score=62.21  Aligned_cols=62  Identities=11%  Similarity=0.100  Sum_probs=27.1

Q ss_pred             ccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCCc----chhhcCCCCCcEEeeeC
Q 011101          339 IGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGPV----PEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       339 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~  400 (493)
                      +..-+.|+.|+|++|.|.+.    +.+.+..-+.|++|+|++|.|.+..    -..+..-..|++|+|++
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            33444555555555555421    2222333344555555555554321    12233334455555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.60  E-value=0.0035  Score=52.05  Aligned_cols=55  Identities=27%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             EEEecCCCCC-CCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcC
Q 011101          347 VFDVGNNRLT-GPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYF  403 (493)
Q Consensus       347 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  403 (493)
                      .++.+++.++ ..+|..+.  .+|++|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4445555543 22333222  2355555555555533333444445555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.55  E-value=0.0047  Score=51.31  Aligned_cols=35  Identities=23%  Similarity=0.145  Sum_probs=16.5

Q ss_pred             CCEEECcCCCCCCCCcccccCCCCCcEEEcccccC
Q 011101          227 LYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF  261 (493)
Q Consensus       227 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  261 (493)
                      |++|+|++|+|+...+..|..+.+|++|+|++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444433333444445555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	493
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	1e-06
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	7e-06
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	9e-06
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	1e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	3e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	7e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	2e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	2e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	4e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	4e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	6e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	6e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	7e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	8e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1tzpa_	255	d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase Mep	0.002
d1tzpa_	255	d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase Mep	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.0 bits (198), Expect = 2e-17
 Identities = 67/298 (22%), Positives = 118/298 (39%), Gaps = 32/298 (10%)

Query: 131 KVIQRFKKRITYDPQGIANTWMGPDVCN-KYKGFVCDVRPDIKKKAVAGVDFNGYRFNGP 189
           + + + KK +  +P  +++     D CN  + G +CD   D +   V  +D +G     P
Sbjct: 9   QALLQIKKDLG-NPTTLSSWLPTTDCCNRTWLGVLCD--TDTQTYRVNNLDLSGLNLPKP 65

Query: 190 DFSLSDFLEKLEDLAIFH-ANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNI 248
            + +   L  L  L   +    NN    IP   +KL  L+ L +++  + G  P  +  I
Sbjct: 66  -YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 249 KNLTFLDLRFNSFSGPVPAEIF-YLDLDVLFLNNNKFSQNLPENIGSTGALY--VTFANN 305
           K L  LD  +N+ SG +P  I    +L  +  + N+ S  +P++ GS   L+  +T + N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 306 EFTGPIPSSIGRAKYLLE----------------------VLFLNNFFTGCLPYEIGFLS 343
             TG IP +                                + L          ++G   
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244

Query: 344 NSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN 401
           N    D+ NNR+ G +P     L  +  LN++ N   G +P+    L +    + + N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 231 DVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLP 289
           D+ NN+++G  P  +  +K L  L++ FN+  G +P        DV    NNK     P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 241 FPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLD-LDVLFLNNNKFSQNLPENIGSTGALY 299
              +V   KNL  LDLR N   G +P  +  L  L  L ++ N     +P+         
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

Query: 300 VTFANNEFT--GPIPS 313
             +ANN+     P+P+
Sbjct: 296 SAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 192 SLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFP 242
           +L   L +L+ L   + + NN    IP+    L+       +NNK   G P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (195), Expect = 5e-17
 Identities = 42/231 (18%), Positives = 77/231 (33%), Gaps = 4/231 (1%)

Query: 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261
           D A+    +N  T+        LK L+ L + NNK+    P     +  L  L L  N  
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 262 SG-PVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKY 320
              P        +L V      K  +++   +     + +     + +G    +    K 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFY 380
           L  +   +   T       G   + T   +  N++T     S   L+++  L L+ N   
Sbjct: 152 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 381 GPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
                 +   P L  L L+ N   +V          +V+ +  N I  + +
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 4e-09
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 11/182 (6%)

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNE 306
            +   LDL+ N  +     +   L +L  L L NNK S+  P        L  +  + N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGN--NRLTGPIPHSFG 364
               +P  + +    L      N  T         L+   V ++G    + +G    +F 
Sbjct: 91  LKE-LPEKMPKTLQELR--VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 365 CLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC-RKLIKRKVLDVRM 423
            +  + Y+ +A          +    P L  L L  N  T+V     + L     L +  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 424 NC 425
           N 
Sbjct: 205 NS 206

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
               ++ + D+ NN++T      F  L ++  L L  N+     P     L KL  L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 400 YNYFTQVGPECRKLIKRKVLDVRMNCILDLPN 431
            N   ++  +  K ++   L V  N I  +  
Sbjct: 88  KNQLKELPEKMPKTLQE--LRVHENEITKVRK 117

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 311 IPSSIGRAKYLLEVLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSM 369
           +P  +        +L L NN  T     +   L N     + NN+++   P +F  L  +
Sbjct: 25  VPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 370 QYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDL 429
           + L L+ NQ      ++   L +L       N  T+V       + + ++       L  
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 430 PNQRSREECG 439
               +    G
Sbjct: 139 SGIENGAFQG 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 1/144 (0%)

Query: 288 LPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTV 347
           +P+++       +   NN+ T          K L  ++ +NN  +   P     L     
Sbjct: 25  VPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83

Query: 348 FDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG 407
             +  N+L          L  ++     + +    V   + Q+  +   +          
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 408 PECRKLIKRKVLDVRMNCILDLPN 431
              + + K   + +    I  +P 
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQ 167

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 8/136 (5%)

Query: 200 LEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFN 259
              L   H + N  TK        L  L +L +S N +       + N  +L  L L  N
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 260 SFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-------YVTFANNEFT-GPI 311
                      +  + V++L+NN  S     +    G          V+  +N      I
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 312 PSSIGRAKYLLEVLFL 327
             S  R  Y+   + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 1e-16
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF 258
           KL +L    A +N  +   P        L EL ++ N+L       + ++ NLT LDL  
Sbjct: 195 KLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 259 NSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRA 318
           N  S   P       L  L L  N+ S   P    +         N        S++   
Sbjct: 251 NQISNLAPLSGLT-KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 319 KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ 378
            YL       N  +   P  +  L+        NN+++     S   L+++ +L+   NQ
Sbjct: 310 TYLT---LYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQ 362

Query: 379 FYGPVPEIVCQLPKLVNLSLSYN 401
                P  +  L ++  L L+  
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 39/205 (19%), Positives = 63/205 (30%), Gaps = 13/205 (6%)

Query: 220 MTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFL 279
           + +KL  L  L  +NN++    P+    + NL  L L  N             +L  L L
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI-GTLASLTNLTDLDL 248

Query: 280 NNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEI 339
            NN+ S   P  +     L            I    G        L  N          +
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLS 399
             L   T   +  N ++   P     L+ +Q L  A N+       +   L  +  LS  
Sbjct: 307 KNL---TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-SSL-ANLTNINWLSAG 359

Query: 400 YNYFTQVGPECRKLIKRKVLDVRMN 424
           +N  + +      L +   L +   
Sbjct: 360 HNQISDL-TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 40/249 (16%), Positives = 70/249 (28%), Gaps = 24/249 (9%)

Query: 198 EKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNLTFLD 255
             L +         N T ++ +  + L  +  L      +    G       + NLT ++
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDGVE----YLNNLTQIN 72

Query: 256 LRFNSFSGPVP------------AEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFA 303
              N  +   P                  D+  L    N     L  N  +         
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 304 NNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDV-GNNRLTGPIPHS 362
           N        ++I     L  +  L     G    ++  L+N T  +    +         
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 363 FGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVR 422
              L++++ L    NQ     P  +     L  LSL+ N    +      L     LD+ 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI-GTLASLTNLTDLDLA 249

Query: 423 MNCILDLPN 431
            N I +L  
Sbjct: 250 NNQISNLAP 258

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 5/195 (2%)

Query: 209 NSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAE 268
           +  N T ++P    K      L +S N L+      ++    LT L+L     +      
Sbjct: 18  DKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 269 IFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLN 328
              + L  L L++N+                +  + N  T     ++     L E+    
Sbjct: 75  TLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 329 NFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVC 388
           N      P  +          + NN LT         L ++  L L  N  Y  +P+   
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 389 QLPKLVNLSLSYNYF 403
               L    L  N +
Sbjct: 193 GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 6/204 (2%)

Query: 222 SKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLN 280
           SK+    E++     L    P ++   K+ T L L  N       A +     L  L L+
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 281 NNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIG 340
             + ++   +       L     ++     +P        L  +    N  T      + 
Sbjct: 64  RAELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 341 FLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY 400
            L       +  N L    P        ++ L+LA N        ++  L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 401 NYFTQVGPECRKLIKRKVLDVRMN 424
           N    +              +  N
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 4/179 (2%)

Query: 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261
           D  I H + N               L +L++   +L          +  L  LDL  N  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQL 89

Query: 262 SGPVPAEIFYLDLDVLFLNNNKFSQNLPENI-GSTGALYVTFANNEFTGPIPSSIGRAKY 320
                       L VL ++ N+ +      + G      +    NE     P  +     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 321 LLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF 379
           L ++   NN  T      +  L N     +  N L   IP  F     + +  L  N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 314 SIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLN 373
            + +    LEV       T  LP ++    ++T+  +  N L      +    + +  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 374 LAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPNQ 432
           L   +      ++   LP L  L LS+N    +    + L    VLDV  N +  LP  
Sbjct: 62  LDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 22/243 (9%), Positives = 67/243 (27%), Gaps = 3/243 (1%)

Query: 230 LDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQN-L 288
           LD++   L       +++ + +       +    P+        +  + L+N+    + L
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 289 PENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTV 347
              +     L  ++      + PI +++ +   L+ +             +    S S +
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 348 FDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG 407
            ++  +              +     +      G    +       +           + 
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 408 PECRKLIKRKVLDVRMNCILDLPNQRSREECGKFFSESKKCPNERSLTLVPCARNRSTVN 467
                         ++N +  L   R  +   +   E  + P  ++L +     + +   
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 468 LTE 470
           L E
Sbjct: 244 LKE 246

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 17/224 (7%)

Query: 199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRF 258
           +++ + +  +NS     ++  + S+   L  L +   +L       +    NL  L+L  
Sbjct: 47  RVQHMDL--SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104

Query: 259 NSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGA-----------LYVTFANNEF 307
            S       +        L   N  +  +  E                  L     N + 
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 308 TGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGN-NRLTGPIPHSFGCL 366
           +            +   L  +         E   L+      +     +        G +
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 367 SSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPEC 410
            +++ L +      G +  +   LP   +L ++ ++FT +    
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPT 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 31/194 (15%), Positives = 54/194 (27%), Gaps = 4/194 (2%)

Query: 249 KNLTFLDLRFNSFSGPVPAEIFYLD--LDVLFLNNNKFSQNLPENIGSTGALYVTFANNE 306
                + L  N  S    A          +   +N     +     G      +  ++N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 307 FTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNS-TVFDVGNNRLTGPIPHSFGC 365
               +  +       L  L L+      L   +     +     + +N L      +F  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 366 LSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPE-CRKLIKRKVLDVRMN 424
           L ++ +L L  N+           L  L  L L  N    V P   R L +   L +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 425 CILDLPNQRSREEC 438
            +  LP +      
Sbjct: 212 NLSALPTEALAPLR 225

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 37/206 (17%), Positives = 60/206 (29%), Gaps = 3/206 (1%)

Query: 202 DLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSF 261
                  + N  +          + L  L + +N L          +  L  LDL  N+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 262 SGPVPAEIFY--LDLDVLFLNNNKFSQNLPENIGSTGALYVTF-ANNEFTGPIPSSIGRA 318
              V    F+    L  L L+     +  P       AL   +  +N        +    
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 319 KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQ 378
             L  +    N  +         L +     +  NR+    PH+F  L  +  L L  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 379 FYGPVPEIVCQLPKLVNLSLSYNYFT 404
                 E +  L  L  L L+ N + 
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWV 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 41/234 (17%), Positives = 70/234 (29%), Gaps = 6/234 (2%)

Query: 194 SDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGG-FPMEVVNIKNLT 252
           +       +L I   +SN   +      + L  L +LD+S+N       P     +  L 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 253 FLDL-RFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGP 310
            L L R                L  L+L +N       +     G L ++    N  +  
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 311 IPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQ 370
              +      L  +L   N      P+    L       +  N L+     +   L ++Q
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 371 YLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMN 424
           YL L  N +             L     S +      P+  +L  R +  +  N
Sbjct: 229 YLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQ--RLAGRDLKRLAAN 279

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 195 DFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL 254
                L  L     + N      P     L  L  L +  N L       +  ++ L +L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTG 309
            L  N +     A   +  L     ++++   +LP+ +   G      A N+  G
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL--AGRDLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 352 NNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECR 411
            N  +  I        S++ LN++ N+      E+    P+L  L  S+N+  +V    +
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPELPQ 324

Query: 412 KLIKRKVLDVRMNCILDLPN 431
            L   K L V  N + + P+
Sbjct: 325 NL---KQLHVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 206 FHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPV 265
                N  +  I  +      L EL+VSNNKL    P        L  L   FN  +  V
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPAL---PPRLERLIASFNHLAE-V 319

Query: 266 PAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYV 300
           P      +L  L +  N   +  P+   S   L +
Sbjct: 320 PELPQ--NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 326 FLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE 385
           +  N  +  +        +    +V NN+L   +P     L   + L  + N     VPE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHL-AEVPE 321

Query: 386 IVCQLPKLVNLSLSYNYFTQVGPECRKL 413
           +      L  L + YN   +       +
Sbjct: 322 L---PQNLKQLHVEYNPLREFPDIPESV 346

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 10/126 (7%)

Query: 276 VLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC 334
           VL L +   +     ++     + ++  ++N      P+ +   + L  +   +N     
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 335 LPYEIGFLSNSTVFDVGNNRLTG-PIPHSFGCLSSMQYLNLAMNQFYGP---VPEIVCQL 390
                          + NNRL              +  LNL  N           +   L
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 391 PKLVNL 396
           P + ++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 7/123 (5%)

Query: 254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP 312
           L L     +  V   +  L  +  L L++N+     P  + +   L V  A++     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD 59

Query: 313 SSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP---IPHSFGCLSSM 369
                 +    +L  N          +       + ++  N L             L S+
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 370 QYL 372
             +
Sbjct: 120 SSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 303 ANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHS 362
           A+ + T  +   + +   +  +   +N      P  +  L    V    +N L      +
Sbjct: 6   AHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVA 62

Query: 363 FGCLSSMQYLNLAMNQF-YGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIK 415
                 +Q L L  N+       + +   P+LV L+L  N   Q      +L +
Sbjct: 63  NLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 8/115 (6%)

Query: 324 VLFL-NNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGP 382
           VL L +   T      +  L   T  D+ +NRL    P +   L  ++ L  + N     
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 383 VPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCILDLPNQRSR 435
                    +   L L  N   Q           +  +L+++ N +      + R
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 210 SNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEI 269
           ++     +  +  +L  +  LD+S+N+L    P  +  ++ L  L    N+    V    
Sbjct: 6   AHKDLTVLCHL-EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NVDGVA 62

Query: 270 FYLDLDVLFLNNNKFSQ-NLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLL 322
               L  L L NN+  Q    + + S   L  +    N           R   +L
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 196 FLEKLEDLAIFHA--NSNNFTKSIPKMTSKLKFLYELDVSNNKL--FGGFPMEVVNIKNL 251
               L    I       ++   ++  +   +  L  L++SNN+L         V    NL
Sbjct: 34  SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 93

Query: 252 TFLDLRFNSFSGPVPAEIFY-LDLDVLFLNNNKFSQNLPEN 291
             L+L  N        +    L L+ L+L+ N  S    + 
Sbjct: 94  KILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 13/134 (9%)

Query: 273 DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNF-- 330
           D     L+          ++ +     V    +         I      L  L L+N   
Sbjct: 21  DGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRL 77

Query: 331 -FTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPE---- 385
                +   +    N  + ++  N L             ++ L L  N       +    
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 386 ---IVCQLPKLVNL 396
              I  + PKL+ L
Sbjct: 138 ISAIRERFPKLLRL 151

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 27/237 (11%)

Query: 198 EKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR 257
             L +     A  +N T ++ +  + L  +  L      +     ++   + NL  L+L+
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELK 71

Query: 258 FNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGR 317
            N       A +  L        +    +N+    G      +   + + T   P +   
Sbjct: 72  DNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN 377
              +L            +         + +  +               LS +  L    N
Sbjct: 130 NLQVL------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 378 QFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCILDLPNQ 432
           +     P  +  LP L+ + L  N  + V P      L            I+ L NQ
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLF-----------IVTLTNQ 227

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 203 LAIFHANSNNFT----KSIPKMTSKLKFLYELDVSNNKLFGGFPMEVV-----NIKNLTF 253
           L +      + +     S+         L ELD+SNN L     +++V         L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 254 LDLRFNSFSGPVPAEI 269
           L L    +S  +   +
Sbjct: 431 LVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 322 LEVLFL--NNFFTGCLPYEIGFLSNSTVFDVGNNRLTG----PIPHSFGCLSSMQYLNLA 375
           ++ L +             +  L    V  + +  LT      I  +     ++  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 376 MNQFYGPVPEIVCQL-----PKLVNLSLSYNYFTQVGPEC 410
            N+        V Q       K+  LSL     T  G   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 343 SNSTVFDVGNNRLTG----PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ-----LPKL 393
           S   V  + +  ++      +  +     S++ L+L+ N         + +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 394 VNLSLSYNYFTQVGPE-CRKLIKRK 417
             L L   Y+++   +  + L K K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 197 LEKLEDLAIFHANSNNFT-KSIPKMTSKLKFLYELDVSNNKL----FGGFPMEVVNIKNL 251
           ++ L D+          +     ++   L+    + + +  L           +     L
Sbjct: 4   IQSL-DI-----QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 252 TFLDLRFNSFSGPVPAEIFYLDLDVLFLNNNK 283
             L+LR N         +       L   + K
Sbjct: 58  AELNLRSNELGDVGVHCVL----QGLQTPSCK 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 180 DFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFT----KSIPKMTSKLKFLYELDVSNN 235
           D      +  D   ++ L  L+   +   +    T    K I         L EL++ +N
Sbjct: 8   DIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 236 KLFGGFPMEV-----VNIKNLTFLDLR 257
           +L       V          +  L L+
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 352 NNRLTGPIPH------SFGCLSSMQYLNLAMNQFYGPVPEIVCQ-----LPKLVNLSLSY 400
           +  L+           S      +Q L L  N+        +       +P L+ L L+ 
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 401 NYFTQVGPECRKLIKRKVLDVRMNCILD 428
           N F++      ++  R+V   R    LD
Sbjct: 312 NRFSEEDDVVDEI--REVFSTRGRGELD 337

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 25/199 (12%), Positives = 65/199 (32%), Gaps = 14/199 (7%)

Query: 198 EKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR 257
             L +         N T ++ +  + L  +  L      +     +E   + NLT ++  
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFS 70

Query: 258 FNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGR 317
            N  +         L      ++    +  + +         +T               +
Sbjct: 71  NNQLTDI-----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN 377
               L  L L++     +    G  ++    +  +N++T   P     L++++ L+++ N
Sbjct: 126 NLTNLNRLELSSNTISDISALSGL-TSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 182

Query: 378 QFYGPVPEIVCQLPKLVNL 396
           +       ++ +L  L +L
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 37/224 (16%)

Query: 198 EKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR 257
           +   +    +    + T ++ +  ++L  + ++  +N+ +     ++   + N+T L L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76

Query: 258 FNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGR 317
            N  +   P      +L  L       ++    +         + +         + +  
Sbjct: 77  GNKLTDIKPLA----NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 318 AKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMN 377
              L  +   NN  T      +  L+      + +N+++  +P                 
Sbjct: 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----------------- 173

Query: 378 QFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDV 421
                    +  L KL NL LS N+ + +      L    VL++
Sbjct: 174 ---------LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1e-38  Score=312.33  Aligned_cols=297  Identities=25%  Similarity=0.405  Sum_probs=263.1

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCC-CCCCCC-CCCceeeccCCCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCc
Q 011101          127 QLAFKVIQRFKKRITYDPQGIANTWM-GPDVCN-KYKGFVCDVRPDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLA  204 (493)
Q Consensus       127 ~~~~~~L~~~k~~~~~d~~~~~~~W~-~~~~C~-~w~gv~c~~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~  204 (493)
                      ..+++||.+||+++.++  ..+++|. ++|+|. .|.||.|+..  ....+|+.|||+++++++. ..+|..+++|++|+
T Consensus         5 ~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~--~~~~~v~~L~L~~~~l~g~-~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           5 PQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTD--TQTYRVNNLDLSGLNLPKP-YPIPSSLANLPYLN   79 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCS--SSCCCEEEEEEECCCCSSC-EECCGGGGGCTTCS
T ss_pred             HHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCC--CCcEEEEEEECCCCCCCCC-CCCChHHhcCcccc
Confidence            56889999999999654  3588997 677773 4999999853  3346899999999999872 24789999999999


Q ss_pred             EEEccC-CcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCc
Q 011101          205 IFHANS-NNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNN  282 (493)
Q Consensus       205 ~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n  282 (493)
                      +|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..+... .|+++++++|
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            999997 89999999999999999999999999999899999999999999999999999999888877 9999999999


Q ss_pred             cCCCCccccccccccc--hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCc
Q 011101          283 KFSQNLPENIGSTGAL--YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIP  360 (493)
Q Consensus       283 ~l~~~~p~~~~~~~~l--~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  360 (493)
                      .+.+.+|..+..+..+  .++++.|++++..+..+..+..+ .+++.++...+.++..+..+.+|+.|++++|.+.+.++
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  238 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            9999999998887665  78899999999999888887655 58899999999999999999999999999999997654


Q ss_pred             ccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCc-CCCCC
Q 011101          361 HSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNC-ILDLP  430 (493)
Q Consensus       361 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~-l~~lp  430 (493)
                       .+..+++|++|+|++|+++|.+|..++.+++|++|+|++|+|+|.++.+..+.+|+.+++++|+ +++.|
T Consensus       239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             -ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC
Confidence             6888899999999999999999999999999999999999999866778889999999999996 55543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.4e-28  Score=238.10  Aligned_cols=247  Identities=25%  Similarity=0.330  Sum_probs=217.3

Q ss_pred             CcCcEEEccCCcCCC--ccCcccCCCCCCCEEECcC-CCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCE
Q 011101          201 EDLAIFHANSNNFTK--SIPKMTSKLKFLYELDVSN-NKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDV  276 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~  276 (493)
                      .+++.|+|++|.+++  .+|..++++++|++|+|++ |+++|.+|.+|.++++|++|+|++|++.+..+..+... .|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999999998  4789999999999999996 89999999999999999999999999998777766666 8999


Q ss_pred             EEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhh-HHHHhccccccCCCcccccCCCCCcEEEecCCC
Q 011101          277 LFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYL-LEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNR  354 (493)
Q Consensus       277 L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L-~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  354 (493)
                      +++++|.+.+.+|..++.+..+ ++++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .++++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999999999999999999888 89999999999999999988776 778999999999888888877655 79999999


Q ss_pred             CCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCC-CCccccCCCCCCEEEeeCCcCC-CCCCC
Q 011101          355 LTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQ-VGPECRKLIKRKVLDVRMNCIL-DLPNQ  432 (493)
Q Consensus       355 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~  432 (493)
                      +.+.++..+..+.+|+.|++++|.+.+.++ .+..+++|+.|+|++|+|++ +|..+..+++|++|+|++|+|+ .+|..
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999987655 68889999999999999996 5668999999999999999999 57853


Q ss_pred             --CCchhhcccccCCCCCC
Q 011101          433 --RSREECGKFFSESKKCP  449 (493)
Q Consensus       433 --~~~~~~~~~~~~~~~c~  449 (493)
                        ...++...+.+|...|.
T Consensus       288 ~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEES
T ss_pred             ccCCCCCHHHhCCCccccC
Confidence              23444455666665554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1e-25  Score=218.38  Aligned_cols=226  Identities=19%  Similarity=0.183  Sum_probs=123.4

Q ss_pred             CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEcc
Q 011101          201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLN  280 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~  280 (493)
                      +++++|+|++|+|+...+.+|.++++|++|++++|.++...+..|.++++|++|++++|+++ .++..+. ..++.|++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~-~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-TTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchh-hhhhhhhcc
Confidence            35556666666655433345555666666666666655555555556666666666666555 3443222 255556666


Q ss_pred             CccCCCCccccccccccc-hhhcccCcC--CCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCC
Q 011101          281 NNKFSQNLPENIGSTGAL-YVTFANNEF--TGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTG  357 (493)
Q Consensus       281 ~n~l~~~~p~~~~~~~~l-~L~l~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  357 (493)
                      +|.+.+.....+...... .+++..|..  .......+..+++|+.+++++|.+. .++..  .+++|+.|++++|.+++
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCC
Confidence            655554333333222222 333333322  2223344555555666666666655 23322  24566666666666665


Q ss_pred             CCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCCC
Q 011101          358 PIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       358 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      ..+..|..+..+++|++++|.+++..+..+.++++|++|+|++|+|+.++.++..+++|++|+|++|+|+.++.
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccCh
Confidence            55566666666666666666666555555666666666666666666665556666666666666666666643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3e-25  Score=215.13  Aligned_cols=271  Identities=18%  Similarity=0.152  Sum_probs=218.4

Q ss_pred             CCCceeeccCC-----CCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVRP-----DIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~~-----~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|.+|.|....     .....+++.|+|++|+|+.   ..+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC---cChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            78999997432     2335789999999999998   334579999999999999999998878899999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCC--Cccccccccccc-hhhcccCcCCC
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQ--NLPENIGSTGAL-YVTFANNEFTG  309 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~--~~p~~~~~~~~l-~L~l~~n~l~~  309 (493)
                      +|+++ .++..  ....|+.|++++|.+.+.....+... .+..++...|....  .....+..+..+ ++++++|.+. 
T Consensus        88 ~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            99996 45543  34689999999999984433333323 77788888876542  334456666666 8899999887 


Q ss_pred             CCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcC
Q 011101          310 PIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQ  389 (493)
Q Consensus       310 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  389 (493)
                      .++..+  +++|++|++++|...+..+..|..+..+++|++++|.+.+..+..+..+++|++|+|++|+|+ .+|.++..
T Consensus       164 ~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            445443  568899999999999888899999999999999999999888889999999999999999998 56888999


Q ss_pred             CCCCcEEeeeCCcCCCCCc-c------ccCCCCCCEEEeeCCcCCCCCCCCCchhhc
Q 011101          390 LPKLVNLSLSYNYFTQVGP-E------CRKLIKRKVLDVRMNCILDLPNQRSREECG  439 (493)
Q Consensus       390 l~~L~~L~Ls~N~l~~~~~-~------~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~  439 (493)
                      +++|++|+|++|+|+.+.. .      ...+.+|+.|+|++|.++..+-+...+.|.
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            9999999999999998754 2      345788999999999988655444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=198.19  Aligned_cols=198  Identities=18%  Similarity=0.091  Sum_probs=133.9

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      ..+..+|.++++++.    +|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|.|+. ++ .+..+++|++
T Consensus        10 ~~~~~v~C~~~~L~~----iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA----LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTSCCSS----CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             CCCeEEEccCCCCCe----eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            345667888888876    565443  467788888888876555677778888888888887753 33 3456777777


Q ss_pred             EEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          254 LDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      |+|++|++++ ++..+... +|++|++++|.+.                                               
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~-----------------------------------------------  113 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-----------------------------------------------  113 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCC-----------------------------------------------
T ss_pred             cccccccccc-cccccccccccccccccccccc-----------------------------------------------
Confidence            7777777763 33333322 5555555555543                                               


Q ss_pred             CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccC
Q 011101          333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRK  412 (493)
Q Consensus       333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  412 (493)
                      +.....+..+.++++|++++|.++...+..+..+.+|+.|++++|+|++..+..+..+++|++|+|++|+|+.++..+..
T Consensus       114 ~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~  193 (266)
T d1p9ag_         114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG  193 (266)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCC
Confidence            23334445566777777777777755556666777777778887777766666677777788888888887777777777


Q ss_pred             CCCCCEEEeeCCcCC
Q 011101          413 LIKRKVLDVRMNCIL  427 (493)
Q Consensus       413 l~~L~~L~L~~N~l~  427 (493)
                      +.+|+.|+|++|.+.
T Consensus       194 ~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCCCSEEECCSCCBC
T ss_pred             CCCCCEEEecCCCCC
Confidence            777888888777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.9e-23  Score=197.30  Aligned_cols=221  Identities=17%  Similarity=0.090  Sum_probs=128.7

Q ss_pred             EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcc
Q 011101          178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLR  257 (493)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  257 (493)
                      .++.++.+++.    +|..+.  +++++|+|++|+|+...+..|.++++|++|++++|.+....+..+.++..++.++..
T Consensus        15 ~v~c~~~~L~~----iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          15 TTSCPQQGLQA----VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             EEECCSSCCSS----CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCCc----cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            44566666665    454442  467888888888876555678888888888888888877777777777888887765


Q ss_pred             -cccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCC
Q 011101          258 -FNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCL  335 (493)
Q Consensus       258 -~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  335 (493)
                       .|.++...+..+... +|++|++++|.+.......+....                       +|+.+++++|.+++..
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----------------------~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-----------------------ALQYLYLQDNALQALP  145 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------------------TCCEEECCSSCCCCCC
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhc-----------------------ccchhhhccccccccC
Confidence             444543334444443 788888887777644333333333                       3344444444444333


Q ss_pred             cccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-cccCCC
Q 011101          336 PYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-ECRKLI  414 (493)
Q Consensus       336 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~l~  414 (493)
                      +..|..+.+|+.|++++|++++..+..|..+++|++|++++|++++..|..|..+++|++||+++|+++++++ .+..+.
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence            3444445555555555555554444455555555555555555554445555555555555555555555443 344555


Q ss_pred             CCCEEEeeCCcCC
Q 011101          415 KRKVLDVRMNCIL  427 (493)
Q Consensus       415 ~L~~L~L~~N~l~  427 (493)
                      +|+.|++++|.+.
T Consensus       226 ~L~~L~l~~N~l~  238 (284)
T d1ozna_         226 ALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             ccCEEEecCCCCC
Confidence            5555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.6e-23  Score=195.62  Aligned_cols=222  Identities=17%  Similarity=0.082  Sum_probs=173.2

Q ss_pred             EEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCcc
Q 011101          205 IFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNK  283 (493)
Q Consensus       205 ~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~  283 (493)
                      .++.++++++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....+..+... .++.+....+ 
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~-   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN-   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC-
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc-
Confidence            4566666666 4565443  568888898888876666678888888888888888874443333322 5555544322 


Q ss_pred             CCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccc
Q 011101          284 FSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSF  363 (493)
Q Consensus       284 l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  363 (493)
                                           +.+....+..+.++++|++|++++|.+.......+....+|+.+++++|.+++..+..|
T Consensus        91 ---------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f  149 (284)
T d1ozna_          91 ---------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF  149 (284)
T ss_dssp             ---------------------TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ---------------------cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh
Confidence                                 22233345667888889999999999887667788889999999999999997667889


Q ss_pred             cCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCC-ccccCCCCCCEEEeeCCcCCCCCCC----CCchhh
Q 011101          364 GCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVG-PECRKLIKRKVLDVRMNCILDLPNQ----RSREEC  438 (493)
Q Consensus       364 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~  438 (493)
                      ..+.+|++|+|++|++++..+..+.++++|+.+++++|+++++. ..|..+++|++|++++|.|.+++..    ...+..
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            89999999999999999777888999999999999999999975 4789999999999999999998742    344566


Q ss_pred             cccccCCCCCCCC
Q 011101          439 GKFFSESKKCPNE  451 (493)
Q Consensus       439 ~~~~~~~~~c~~~  451 (493)
                      +.+.+|++.|.+.
T Consensus       230 L~l~~N~l~C~C~  242 (284)
T d1ozna_         230 LRLNDNPWVCDCR  242 (284)
T ss_dssp             EECCSSCEECSGG
T ss_pred             EEecCCCCCCCcc
Confidence            7788999999643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=1.5e-21  Score=194.16  Aligned_cols=147  Identities=25%  Similarity=0.290  Sum_probs=80.0

Q ss_pred             ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEec
Q 011101          273 DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVG  351 (493)
Q Consensus       273 ~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  351 (493)
                      +|++|++++|.+...  ..+..+..+ .+++++|.+++..  .+..+++|++|++++|.+.+..  .+..+..++.++++
T Consensus       220 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~  293 (384)
T d2omza2         220 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELN  293 (384)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccc
Confidence            444444444444321  123333333 4444444444321  1344444444444444444221  23344444555555


Q ss_pred             CCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCCCC
Q 011101          352 NNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       352 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  430 (493)
                      +|.+++ + ..+..+.++++|++++|++++..  .+..+++|++|++++|+|+++. .+..+++|++|++++|+|++++
T Consensus       294 ~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         294 ENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             SSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             cccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            555442 1 23556677777777777777543  2666777777777777777654 5677777777777777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-22  Score=189.29  Aligned_cols=180  Identities=21%  Similarity=0.205  Sum_probs=129.5

Q ss_pred             CCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 011101          171 IKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKN  250 (493)
Q Consensus       171 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  250 (493)
                      ....+++.|+|++|.|++   ..+..|..+++|++|+|++|+|+. ++ .++.+++|++|+|++|+++ ..+..+.++++
T Consensus        28 ~lp~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~  101 (266)
T d1p9ag_          28 DLPKDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA  101 (266)
T ss_dssp             CCCTTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTT
T ss_pred             CcCcCCCEEECcCCcCCC---cCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccc
Confidence            344689999999999998   555779999999999999999984 43 4688999999999999996 45678899999


Q ss_pred             CcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccc
Q 011101          251 LTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNN  329 (493)
Q Consensus       251 L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  329 (493)
                      |++|++++|.+....+..+... ++++|++++|.+...                                          
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l------------------------------------------  139 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL------------------------------------------  139 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC------------------------------------------
T ss_pred             cccccccccccceeecccccccccccccccccccccee------------------------------------------
Confidence            9999999999985444444333 777777777776521                                          


Q ss_pred             cccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCC
Q 011101          330 FFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFT  404 (493)
Q Consensus       330 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  404 (493)
                           .+..+..+.+|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+.
T Consensus       140 -----~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         140 -----PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             -----CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -----ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence                 1223334455666666666666555555566666666666666666 45555556666666666666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=2.2e-20  Score=185.60  Aligned_cols=237  Identities=22%  Similarity=0.297  Sum_probs=170.0

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|++++++|+.    + +.+..+++|++|++++|+|++..  .++++++|++|++++|.+.+..  .+.++++|+.
T Consensus        44 ~~l~~L~l~~~~I~~----l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          44 DQVTTLQADRLGIKS----I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             TTCCEEECCSSCCCC----C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             CCCCEEECCCCCCCC----c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccc
Confidence            568889999988876    3 35788889999999999988643  3888999999999999886543  3788889999


Q ss_pred             EEcccccCCCCCCcc---------------------------------------------------------------cc
Q 011101          254 LDLRFNSFSGPVPAE---------------------------------------------------------------IF  270 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~---------------------------------------------------------------~~  270 (493)
                      |++++|.+++.....                                                               ..
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            998888766321110                                                               00


Q ss_pred             -ccccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEE
Q 011101          271 -YLDLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVF  348 (493)
Q Consensus       271 -~~~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  348 (493)
                       ..+++.+++++|.+.+..+  +.....+ +|++++|.++. + ..+..+++|+.|++++|.+++..  .+..+++|++|
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  268 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL  268 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEe
Confidence             0146666677776665433  2233334 67777777663 2 35667777777777777777533  36677778888


Q ss_pred             EecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCEEEeeCCcCCC
Q 011101          349 DVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       349 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ++++|.+++ ++ .+..+..++.+++++|.+++.  ..+..+.+++.|++++|+|+++. .+..+++|+.|++++|.|++
T Consensus       269 ~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         269 KLGANQISN-IS-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             ECCSSCCCC-CG-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCC
T ss_pred             eccCcccCC-CC-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCC
Confidence            888877773 32 356677778888888877743  34677889999999999999874 47889999999999999988


Q ss_pred             CC
Q 011101          429 LP  430 (493)
Q Consensus       429 lp  430 (493)
                      ++
T Consensus       344 l~  345 (384)
T d2omza2         344 VS  345 (384)
T ss_dssp             CG
T ss_pred             Ch
Confidence            75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.1e-19  Score=167.70  Aligned_cols=207  Identities=17%  Similarity=0.194  Sum_probs=140.4

Q ss_pred             ceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 011101          175 AVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFL  254 (493)
Q Consensus       175 ~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  254 (493)
                      ++..++++.+.+++   .+  .++.+.+|+.|++.+|+|+. + ..+.++++|++|++++|.+++..  .+..+.+|++|
T Consensus        20 ~~~~~~l~~~~~~d---~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l   90 (227)
T d1h6ua2          20 NAIKIAAGKSNVTD---TV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITEL   90 (227)
T ss_dssp             HHHHHHTTCSSTTS---EE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEE
T ss_pred             HHHHHHhCCCCcCC---cC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccc
Confidence            34455666666665   22  34566778888888888874 3 35778888888888888876543  37778888888


Q ss_pred             EcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          255 DLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       255 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      ++++|.++ .++......+|++++++++...+..+                         +.....++.+.++++.+...
T Consensus        91 ~~~~n~~~-~i~~l~~l~~L~~l~l~~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~  144 (227)
T d1h6ua2          91 ELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP-------------------------LAGLSNLQVLYLDLNQITNI  144 (227)
T ss_dssp             ECCSCCCS-CCGGGTTCTTCCEEECTTSCCCCCGG-------------------------GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc-ccccccccccccccccccccccccch-------------------------hccccchhhhhchhhhhchh
Confidence            88888776 45443333378888887777653211                         12223333444555554432


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCC
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLI  414 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~  414 (493)
                        ..+..+.+|++|++++|.+.+.  ..+..+++|++|+|++|++++. + .+..+++|++|+|++|+|++++ .+..++
T Consensus       145 --~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~  217 (227)
T d1h6ua2         145 --SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS-PLANTS  217 (227)
T ss_dssp             --GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG-GGTTCT
T ss_pred             --hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc-ccccCC
Confidence              2355677888888888888732  2377888889999988888753 3 3778888999999999888875 477888


Q ss_pred             CCCEEEeeC
Q 011101          415 KRKVLDVRM  423 (493)
Q Consensus       415 ~L~~L~L~~  423 (493)
                      +|+.|++++
T Consensus       218 ~L~~L~lsn  226 (227)
T d1h6ua2         218 NLFIVTLTN  226 (227)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEEeeC
Confidence            899988874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.1e-18  Score=154.66  Aligned_cols=187  Identities=18%  Similarity=0.228  Sum_probs=148.7

Q ss_pred             ccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 011101          173 KKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLT  252 (493)
Q Consensus       173 ~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  252 (493)
                      ..+++.|++.+|+++.    + ..+.++++|++|++++|.+++..  .+.++.+|++|++++|.++. + ..+.++++|+
T Consensus        40 l~~L~~L~l~~~~i~~----l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~  110 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT----I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (227)
T ss_dssp             HHTCCEEECTTSCCCC----C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             cCCcCEEECCCCCCCc----c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccc
Confidence            4679999999999987    4 35899999999999999998654  38999999999999999864 3 3688999999


Q ss_pred             EEEcccccCCCCCCccccccccCEEEccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          253 FLDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       253 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      +|+++++.+.+ +........++.+.++++.+...                         ..+..+.+|++|++++|.+.
T Consensus       111 ~l~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-------------------------~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2         111 TLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITNI-------------------------SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             EEECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccccc-cchhccccchhhhhchhhhhchh-------------------------hhhccccccccccccccccc
Confidence            99999999873 33333444888888888876532                         12345566777777777776


Q ss_pred             CCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeC
Q 011101          333 GCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSY  400 (493)
Q Consensus       333 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  400 (493)
                      ..  ..+.++++|++|+|++|++++ ++ .+..+++|++|+|++|++++. + .+.++++|+.|++++
T Consensus       165 ~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         165 DL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            43  237788999999999999984 44 478899999999999999854 3 378899999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=8.5e-17  Score=157.08  Aligned_cols=97  Identities=21%  Similarity=0.306  Sum_probs=70.1

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTF  253 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  253 (493)
                      .+++.|||++++++.    +|+.   +++|++|++++|+|+ .+|..   +.+|++|++++|+++ .++. +  .+.|++
T Consensus        38 ~~l~~LdLs~~~L~~----lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS----LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSC----CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCE
T ss_pred             cCCCEEEeCCCCCCC----CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccc
Confidence            357888999988876    6643   467888899999888 55654   457888888888885 3332 1  246888


Q ss_pred             EEcccccCCCCCCccccccccCEEEccCccCCC
Q 011101          254 LDLRFNSFSGPVPAEIFYLDLDVLFLNNNKFSQ  286 (493)
Q Consensus       254 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~  286 (493)
                      |++++|.+. .+|......+|++|++++|.+..
T Consensus       103 L~L~~n~l~-~lp~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         103 LGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             EECCSSCCS-SCCCCTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccc-cccchhhhccceeeccccccccc
Confidence            999888887 66654333488888888887763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.2e-18  Score=156.75  Aligned_cols=223  Identities=13%  Similarity=0.036  Sum_probs=137.2

Q ss_pred             EEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCC-cccccCCCCCcEEE
Q 011101          177 AGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGF-PMEVVNIKNLTFLD  255 (493)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~  255 (493)
                      +.++.++.+++.    +|..+.  +++++|++++|+|+...+..|.++++|++|++++|.+...+ +..|.++.++++|+
T Consensus        11 ~~i~c~~~~l~~----iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVTE----IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCSS----CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCCC----cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            356666666665    554442  57888889888888555556888888999999888876543 44678888888888


Q ss_pred             ccc-ccCCCCCCcccccc-ccCEEEccCccCCCCccc-cccccccchhhcccCcCCCCCchhhhhhhhhHHHHhcccccc
Q 011101          256 LRF-NSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPE-NIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       256 Ls~-n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~-~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  332 (493)
                      +.. |.+....+..+... +|++|++++|.+....+. .+..+..+                       ..+...++.+.
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-----------------------~~~~~~n~~l~  141 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-----------------------LLDIQDNINIH  141 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-----------------------EEEEESCTTCC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccc-----------------------ccccccccccc
Confidence            764 55664444444444 888888888887632211 11112222                       22222223333


Q ss_pred             CCCcccccCC-CCCcEEEecCCCCCCCCcccccCCCCCCEE-EcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc-c
Q 011101          333 GCLPYEIGFL-SNSTVFDVGNNRLTGPIPHSFGCLSSMQYL-NLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP-E  409 (493)
Q Consensus       333 ~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~  409 (493)
                      ......|..+ ..++.|++++|+++. ++.......+++++ ++++|+++...+..|.++++|++|+|++|+|+.++. .
T Consensus       142 ~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         142 TIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             cccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence            2222333333 367788888888884 33333344454444 567777875444557778888888888888887765 4


Q ss_pred             ccCCCCCCEEEeeCCcCCCCCC
Q 011101          410 CRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       410 ~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      +.++.+|+.+++.  .++.+|.
T Consensus       221 ~~~l~~L~~l~~~--~l~~lp~  240 (242)
T d1xwdc1         221 LENLKKLRARSTY--NLKKLPT  240 (242)
T ss_dssp             CTTCCEEESSSEE--SSSCSCC
T ss_pred             HcCCcccccCcCC--CCCcCCC
Confidence            5556666555543  3556653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.7e-17  Score=150.91  Aligned_cols=98  Identities=24%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEee
Q 011101          319 KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL  398 (493)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  398 (493)
                      ++|+.|++++|.+.. + ..+..+.+|+.+++++|.+++  ...+..+++|+++++++|++++. + .+.++++|++|+|
T Consensus       112 ~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~L  185 (210)
T d1h6ta2         112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYL  185 (210)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred             ccccccccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEEC
Confidence            334444444444331 1 235566777888888887773  23456777888888888888753 3 3777888888888


Q ss_pred             eCCcCCCCCccccCCCCCCEEEeeC
Q 011101          399 SYNYFTQVGPECRKLIKRKVLDVRM  423 (493)
Q Consensus       399 s~N~l~~~~~~~~~l~~L~~L~L~~  423 (493)
                      ++|+|++++ .+..+++|++|+|++
T Consensus       186 s~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         186 SKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCCh-hhcCCCCCCEEEccC
Confidence            888887763 577888888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.1e-17  Score=147.76  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             hhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEee
Q 011101          319 KYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSL  398 (493)
Q Consensus       319 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  398 (493)
                      ..++.+++++|.+++  ...+..+++|+++++++|++++ ++ .+..+++|++|+|++|+|++ ++ .+..+++|++|+|
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             ccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence            333444444444432  1234456777888888888874 33 36777888888888888874 44 4777888888887


Q ss_pred             eC
Q 011101          399 SY  400 (493)
Q Consensus       399 s~  400 (493)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.4e-16  Score=141.94  Aligned_cols=76  Identities=25%  Similarity=0.334  Sum_probs=51.2

Q ss_pred             ccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCccccCCCCCCE
Q 011101          339 IGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGPECRKLIKRKV  418 (493)
Q Consensus       339 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~  418 (493)
                      +..+++|+.|++++|++. .++ .+..+.+|++|++++|++++. + .+.++++|++|++++|+|+++ +.+..+++|++
T Consensus       124 ~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~~l~~L~~L~~  198 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-SVLAKLTNLES  198 (199)
T ss_dssp             GTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred             cchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-ccccCCCCCCc
Confidence            445667777777777776 333 466677777777777777643 2 366777777777777777765 34666777766


Q ss_pred             E
Q 011101          419 L  419 (493)
Q Consensus       419 L  419 (493)
                      |
T Consensus       199 L  199 (199)
T d2omxa2         199 L  199 (199)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-17  Score=151.40  Aligned_cols=215  Identities=15%  Similarity=0.066  Sum_probs=140.3

Q ss_pred             CCCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccC-cccCCCCCCCEEEC
Q 011101          159 KYKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIP-KMTSKLKFLYELDV  232 (493)
Q Consensus       159 ~w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~L~L  232 (493)
                      .+..|.|...     +.....+++.|++++|.|+.   ..+..|.++++|++|++++|.+...++ ..|..+.++++|++
T Consensus         9 ~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~---l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             CSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE---ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             cCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc---cChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            6677888632     23334689999999999987   444578999999999999999986553 56889999999998


Q ss_pred             cC-CCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc---ccCEEEccCccCCCCccccccccccchhhcccCcCC
Q 011101          233 SN-NKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL---DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFT  308 (493)
Q Consensus       233 s~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~---~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~  308 (493)
                      .. |.+....+..|.++++|++|++++|.+. ..+......   .+..+...++.+.......+..+.            
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~------------  152 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------  152 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB------------
T ss_pred             cccccccccccccccccccccccccchhhhc-cccccccccccccccccccccccccccccccccccc------------
Confidence            64 6777777788999999999999999997 344332222   455555666666533222222221            


Q ss_pred             CCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEE-EecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhh
Q 011101          309 GPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVF-DVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIV  387 (493)
Q Consensus       309 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  387 (493)
                                ..++.|++++|+++. ++.......+++++ ++++|+++...+..|.++++|++|+|++|+|+...+..+
T Consensus       153 ----------~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         153 ----------FESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             ----------SSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             ----------ccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence                      123344455555553 22222333444444 456667773333456777778888888887774444456


Q ss_pred             cCCCCCcEEeeeC
Q 011101          388 CQLPKLVNLSLSY  400 (493)
Q Consensus       388 ~~l~~L~~L~Ls~  400 (493)
                      .++++|+.|++.+
T Consensus       222 ~~l~~L~~l~~~~  234 (242)
T d1xwdc1         222 ENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCEEESSSEES
T ss_pred             cCCcccccCcCCC
Confidence            6666666655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.9e-16  Score=141.73  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCcc-CcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101          178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSI-PKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL  256 (493)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  256 (493)
                      .++.++++++.    +|..+.  +++++|+|++|+|+..+ ...|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus        12 ~v~Cs~~~L~~----iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          12 TVDCTGRGLKE----IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             EEECTTSCCSS----CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             EEEEeCCCcCc----cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            45555555554    444332  45666666666665432 344556666666666666666555566666666666666


Q ss_pred             ccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccc-hhhcccCcCCCCCchhhhhhhhhHHHHhccccccCC
Q 011101          257 RFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGAL-YVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGC  334 (493)
Q Consensus       257 s~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  334 (493)
                      ++|+++...+..+... +|++|+|++|+|++..+..|..+..+ ++++++|.+..... ...-...++.+.+..+.+...
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeC
Confidence            6666663333333333 66666666666665555555555555 56666665543221 111223455666666665544


Q ss_pred             CcccccCCCCCcEEEecCCCCC
Q 011101          335 LPYEIGFLSNSTVFDVGNNRLT  356 (493)
Q Consensus       335 ~p~~l~~l~~L~~L~Ls~N~l~  356 (493)
                      .|.   .+..++.++|+.|.+.
T Consensus       165 ~p~---~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         165 APS---KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             SST---TTTTSBGGGSCTTTCC
T ss_pred             CCh---hhcCCEeeecCHhhCc
Confidence            443   2344455555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.3e-16  Score=141.21  Aligned_cols=169  Identities=18%  Similarity=0.127  Sum_probs=131.1

Q ss_pred             CCCceeeccC-----CCCCccceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECc
Q 011101          159 KYKGFVCDVR-----PDIKKKAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVS  233 (493)
Q Consensus       159 ~w~gv~c~~~-----~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls  233 (493)
                      .|..|.|+..     +.....+++.|+|++|.|+..  .....|..+++|++|+|++|.+....+..|..+++|++|+|+
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~--~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI--SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSB--CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCccc--ccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            6788888633     233456899999999999761  235668999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCCCCccccccccccchhhcccCcCCCCCc
Q 011101          234 NNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFSQNLPENIGSTGALYVTFANNEFTGPIP  312 (493)
Q Consensus       234 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p  312 (493)
                      +|+|+...+..|.++++|++|+|++|+|++..+..+... +|++|+|++|.+.......+.......+.+..+.+....|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            999998888899999999999999999995555555555 9999999999987544322211111255666677766666


Q ss_pred             hhhhhhhhhHHHHhcccccc
Q 011101          313 SSIGRAKYLLEVLFLNNFFT  332 (493)
Q Consensus       313 ~~l~~l~~L~~L~L~~n~l~  332 (493)
                      ..+   ..++.++|+.|.+.
T Consensus       167 ~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             TTT---TTSBGGGSCTTTCC
T ss_pred             hhh---cCCEeeecCHhhCc
Confidence            544   44566788888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=9.9e-16  Score=137.86  Aligned_cols=162  Identities=17%  Similarity=0.257  Sum_probs=94.5

Q ss_pred             CCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEE
Q 011101          199 KLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLF  278 (493)
Q Consensus       199 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~  278 (493)
                      .+.+|++|++++|.++. + +.+..+++|++|++++|++++..  .+.++++|++|++++|.+. .++..-...+|++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccccccccccccccc
Confidence            34455556666555553 2 23455566666666666654332  2555666666666666554 333211222566666


Q ss_pred             ccCccCCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCC
Q 011101          279 LNNNKFSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGP  358 (493)
Q Consensus       279 L~~n~l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  358 (493)
                      +++|.+...                         ..+..+++|+.|++++|.+.. + ..+..+.+|++|++++|++++ 
T Consensus       113 l~~~~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-  164 (199)
T d2omxa2         113 LFNNQITDI-------------------------DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-  164 (199)
T ss_dssp             CCSSCCCCC-------------------------GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-
T ss_pred             ccccccccc-------------------------cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-
Confidence            655554421                         123344555566666666552 2 246677788888888888874 


Q ss_pred             CcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEE
Q 011101          359 IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNL  396 (493)
Q Consensus       359 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  396 (493)
                      ++ .+.++++|++|++++|++++ ++ .+..+++|++|
T Consensus       165 l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            33 47788888888888888874 33 46777888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.55  E-value=8.3e-14  Score=135.39  Aligned_cols=143  Identities=22%  Similarity=0.199  Sum_probs=99.1

Q ss_pred             CcCcEEEccCCcCCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCccccccccCEEEcc
Q 011101          201 EDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYLDLDVLFLN  280 (493)
Q Consensus       201 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~  280 (493)
                      .++++|+|+++.++ .+|+.   .++|++|+|++|+|+ .+|..   +.+|+.|++++|+++ .++..  ...|++|+++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh--cccccccccc
Confidence            47899999999998 47753   578999999999997 66754   468999999999998 55432  1379999999


Q ss_pred             CccCCCCccccccccccc-hhhcccCcCCCCC------------------chhhhhhhhhHHHHhccccccCCC------
Q 011101          281 NNKFSQNLPENIGSTGAL-YVTFANNEFTGPI------------------PSSIGRAKYLLEVLFLNNFFTGCL------  335 (493)
Q Consensus       281 ~n~l~~~~p~~~~~~~~l-~L~l~~n~l~~~~------------------p~~l~~l~~L~~L~L~~n~l~~~~------  335 (493)
                      +|.+. .+|. ++.+..+ ++++++|.+....                  ...+..+..++.|++++|......      
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             ccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccc
Confidence            99997 4554 4666666 7888887765321                  122344455566666665543210      


Q ss_pred             ------------cccccCCCCCcEEEecCCCCC
Q 011101          336 ------------PYEIGFLSNSTVFDVGNNRLT  356 (493)
Q Consensus       336 ------------p~~l~~l~~L~~L~Ls~N~l~  356 (493)
                                  ...+..++.|+.+++++|...
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence                        112345677888888877655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=3.9e-16  Score=152.83  Aligned_cols=236  Identities=15%  Similarity=0.122  Sum_probs=135.7

Q ss_pred             hhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----------CcccccCCCCCcEEEccccc
Q 011101          195 DFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----------FPMEVVNIKNLTFLDLRFNS  260 (493)
Q Consensus       195 ~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----------~p~~l~~l~~L~~L~Ls~n~  260 (493)
                      ..+.....|+.|+|++|.|...    +...+...++|+.|+++++.+...          +...+..+++|++|+|++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3445555556666665555421    222344555566666655443211          11123344556666666665


Q ss_pred             CCCCCCcccc-----ccccCEEEccCccCCCCccccc-------------cccccc-hhhcccCcCCCC----Cchhhhh
Q 011101          261 FSGPVPAEIF-----YLDLDVLFLNNNKFSQNLPENI-------------GSTGAL-YVTFANNEFTGP----IPSSIGR  317 (493)
Q Consensus       261 l~~~~p~~~~-----~~~L~~L~L~~n~l~~~~p~~~-------------~~~~~l-~L~l~~n~l~~~----~p~~l~~  317 (493)
                      +.......+.     ..+|++|++++|.+.......+             .....+ .+.+++|.+...    +...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            5433211111     1256666666655432111111             011112 445555554422    2233445


Q ss_pred             hhhhHHHHhccccccCC-----CcccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCCcchh--
Q 011101          318 AKYLLEVLFLNNFFTGC-----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGPVPEI--  386 (493)
Q Consensus       318 l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--  386 (493)
                      ...|++|++++|.+...     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.|++.....  
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            56778888888877632     234567789999999999998642    3456678899999999999998543332  


Q ss_pred             --hc--CCCCCcEEeeeCCcCCCC-----Cccc-cCCCCCCEEEeeCCcCCCCC
Q 011101          387 --VC--QLPKLVNLSLSYNYFTQV-----GPEC-RKLIKRKVLDVRMNCILDLP  430 (493)
Q Consensus       387 --l~--~l~~L~~L~Ls~N~l~~~-----~~~~-~~l~~L~~L~L~~N~l~~lp  430 (493)
                        +.  ....|++|++++|+|+..     ...+ .++++|+.|+|++|+|..-.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence              32  246799999999998762     2233 35789999999999997643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.4e-17  Score=162.27  Aligned_cols=86  Identities=14%  Similarity=0.024  Sum_probs=57.3

Q ss_pred             CCCcEEEecCCCCCCCCcc----cccCCCCCCEEEcccCCCCCC----cchhhc-CCCCCcEEeeeCCcCCCC-----Cc
Q 011101          343 SNSTVFDVGNNRLTGPIPH----SFGCLSSMQYLNLAMNQFYGP----VPEIVC-QLPKLVNLSLSYNYFTQV-----GP  408 (493)
Q Consensus       343 ~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~-----~~  408 (493)
                      ..|+.+++++|.++.....    .+....+|++|+|++|+|++.    +...+. ....|++|+|++|.|+..     ..
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            4677777777776643222    233456788888888888643    223332 356788888888888762     22


Q ss_pred             cccCCCCCCEEEeeCCcCCC
Q 011101          409 ECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       409 ~~~~l~~L~~L~L~~N~l~~  428 (493)
                      .+..+++|++|+|++|.|+.
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCH
T ss_pred             HHhcCCCCCEEECCCCcCCH
Confidence            45667888899998888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.2e-14  Score=118.43  Aligned_cols=106  Identities=22%  Similarity=0.257  Sum_probs=86.5

Q ss_pred             HHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCc
Q 011101          323 EVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNY  402 (493)
Q Consensus       323 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  402 (493)
                      .|++++|+++ .++ .+..+.+|++|++++|+|+ .+|..+..+++|++|++++|+|++ ++ .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4678888887 444 4788889999999999998 677788889999999999999984 44 48888999999999999


Q ss_pred             CCCCCc--cccCCCCCCEEEeeCCcCCCCCCCC
Q 011101          403 FTQVGP--ECRKLIKRKVLDVRMNCILDLPNQR  433 (493)
Q Consensus       403 l~~~~~--~~~~l~~L~~L~L~~N~l~~lp~~~  433 (493)
                      |++++.  .+..+++|+.|++++|.|+.++...
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~  109 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  109 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHH
Confidence            988753  5788889999999999988776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=1.1e-15  Score=149.52  Aligned_cols=234  Identities=18%  Similarity=0.154  Sum_probs=164.9

Q ss_pred             cceEEEEcCCCCcCCCCC-ccchhhhCCCcCcEEEccCCcCCCc----------cCcccCCCCCCCEEECcCCCCCCC--
Q 011101          174 KAVAGVDFNGYRFNGPDF-SLSDFLEKLEDLAIFHANSNNFTKS----------IPKMTSKLKFLYELDVSNNKLFGG--  240 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~----------~p~~~~~l~~L~~L~Ls~n~l~~~--  240 (493)
                      ..++.|+|++|.+....+ .+-..+...++|+.|+++++.+...          +...+..+++|++|+|++|.++..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            568899999998865210 1334567789999999998765422          224457789999999999998754  


Q ss_pred             --CcccccCCCCCcEEEcccccCCCCCCccc--------------cccccCEEEccCccCCCCccc----cccccccc-h
Q 011101          241 --FPMEVVNIKNLTFLDLRFNSFSGPVPAEI--------------FYLDLDVLFLNNNKFSQNLPE----NIGSTGAL-Y  299 (493)
Q Consensus       241 --~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--------------~~~~L~~L~L~~n~l~~~~p~----~~~~~~~l-~  299 (493)
                        +...+...++|++|++++|.+.......+              ....|+.|.+++|.+....-.    .+.....+ .
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              23345578999999999998753211111              112789999999988743322    23344445 8


Q ss_pred             hhcccCcCCCC-----CchhhhhhhhhHHHHhccccccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccC-
Q 011101          300 VTFANNEFTGP-----IPSSIGRAKYLLEVLFLNNFFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGC-  365 (493)
Q Consensus       300 L~l~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~-  365 (493)
                      |++++|.+...     +...+..+++|++|++++|.++..    +...+..+++|++|+|++|.|++.    +...+.. 
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            89999987632     233456678899999999998643    345567889999999999999854    2223332 


Q ss_pred             -CCCCCEEEcccCCCCCCc----chhhc-CCCCCcEEeeeCCcCCCCC
Q 011101          366 -LSSMQYLNLAMNQFYGPV----PEIVC-QLPKLVNLSLSYNYFTQVG  407 (493)
Q Consensus       366 -l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~l~~~~  407 (493)
                       ...|++|+|++|+|+...    ...+. ++++|+.|+|++|++....
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence             367999999999997432    33332 5789999999999998753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.3e-13  Score=113.65  Aligned_cols=115  Identities=19%  Similarity=0.216  Sum_probs=89.5

Q ss_pred             hhcccCcCCCCCchhhhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCC
Q 011101          300 VTFANNEFTGPIPSSIGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQF  379 (493)
Q Consensus       300 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  379 (493)
                      |++++|+++ .++ .+..+.+|++|++++|.++ .+|..++.+++|++|++++|.|+ .++ .+..+++|++|++++|+|
T Consensus         3 L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           3 LHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCcc
Confidence            344444444 333 3778888999999999998 57778899999999999999999 455 588999999999999999


Q ss_pred             CCCc-chhhcCCCCCcEEeeeCCcCCCCCc----cccCCCCCCEE
Q 011101          380 YGPV-PEIVCQLPKLVNLSLSYNYFTQVGP----ECRKLIKRKVL  419 (493)
Q Consensus       380 ~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L  419 (493)
                      ++.. ...+..+++|+.|++++|.++....    ....+++|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8543 2567889999999999999987532    23557777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.7e-15  Score=151.36  Aligned_cols=109  Identities=18%  Similarity=0.084  Sum_probs=76.6

Q ss_pred             hhHHHHhccccccCCCcc----cccCCCCCcEEEecCCCCCCC----Cccccc-CCCCCCEEEcccCCCCCC----cchh
Q 011101          320 YLLEVLFLNNFFTGCLPY----EIGFLSNSTVFDVGNNRLTGP----IPHSFG-CLSSMQYLNLAMNQFYGP----VPEI  386 (493)
Q Consensus       320 ~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~  386 (493)
                      .|+.+++++|.++.....    .+....+|++|+|++|.+++.    +...+. ..+.|++|+|++|.|++.    +...
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            455566666665543222    234557899999999999743    333343 457799999999999853    3445


Q ss_pred             hcCCCCCcEEeeeCCcCCCCC-----cccc-CCCCCCEEEeeCCcCCC
Q 011101          387 VCQLPKLVNLSLSYNYFTQVG-----PECR-KLIKRKVLDVRMNCILD  428 (493)
Q Consensus       387 l~~l~~L~~L~Ls~N~l~~~~-----~~~~-~l~~L~~L~L~~N~l~~  428 (493)
                      +..+++|++|||++|+|+...     ..+. ....|+.|++.+|.+..
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            667799999999999998631     1232 34579999999998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.7e-14  Score=123.74  Aligned_cols=81  Identities=22%  Similarity=0.133  Sum_probs=35.9

Q ss_pred             cCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcc-hhhcCCCCCcEEeeeCCcCCCCCc----cccCCC
Q 011101          340 GFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP-EIVCQLPKLVNLSLSYNYFTQVGP----ECRKLI  414 (493)
Q Consensus       340 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~l~  414 (493)
                      ..+++|++|++++|+++...+..+..+++|++|++++|+|+.... ..+..+++|++|++++|.++..+.    .+..++
T Consensus        60 ~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp  139 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP  139 (162)
T ss_dssp             CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred             ccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCC
Confidence            334445555555555543222233344555555555555442111 234444555555555555544432    234445


Q ss_pred             CCCEEE
Q 011101          415 KRKVLD  420 (493)
Q Consensus       415 ~L~~L~  420 (493)
                      +|++||
T Consensus       140 ~L~~LD  145 (162)
T d1a9na_         140 QVRVLD  145 (162)
T ss_dssp             TCSEET
T ss_pred             CcCeeC
Confidence            555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.5e-15  Score=139.21  Aligned_cols=86  Identities=14%  Similarity=0.051  Sum_probs=50.6

Q ss_pred             cCCCCCcEEEecCC-CCCCCCcccccCCCCCCEEEcccC-CCCCCcchhhcCCCCCcEEeeeCCcCCCC-Ccc-ccCCCC
Q 011101          340 GFLSNSTVFDVGNN-RLTGPIPHSFGCLSSMQYLNLAMN-QFYGPVPEIVCQLPKLVNLSLSYNYFTQV-GPE-CRKLIK  415 (493)
Q Consensus       340 ~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~  415 (493)
                      ..+++|++|++++| .+++.....+..+++|++|+|++| .+++.....+..+++|+.|+++++ ++.. ... ...+++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            45667777777764 455555566666777777777774 565555555666777777777766 3321 111 133444


Q ss_pred             CCEEEeeCCcCCCC
Q 011101          416 RKVLDVRMNCILDL  429 (493)
Q Consensus       416 L~~L~L~~N~l~~l  429 (493)
                      |   .+..+.++.+
T Consensus       251 L---~i~~~~ls~~  261 (284)
T d2astb2         251 L---QINCSHFTTI  261 (284)
T ss_dssp             S---EESCCCSCCT
T ss_pred             c---cccCccCCCC
Confidence            4   3455566554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-14  Score=136.94  Aligned_cols=205  Identities=14%  Similarity=0.146  Sum_probs=136.5

Q ss_pred             cceEEEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCcCCCccCcccCCCCCCCEEECcCC-CCCCC-CcccccCCCCC
Q 011101          174 KAVAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKFLYELDVSNN-KLFGG-FPMEVVNIKNL  251 (493)
Q Consensus       174 ~~l~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L  251 (493)
                      .++++||++++.++..  .+...+.++++|++|+++++.+++.....++++++|++|+++++ .++.. +...+.++++|
T Consensus        46 ~~L~~LdLs~~~i~~~--~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVS--TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHH--HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHH--HHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4688888888877651  24455778888888888888887766677788888888888885 45421 11223467888


Q ss_pred             cEEEccccc-CCCC-CCccccc--cccCEEEccCcc--CCCCccccccccccchhhcccCcCCCCCchhhhhhhhhHHHH
Q 011101          252 TFLDLRFNS-FSGP-VPAEIFY--LDLDVLFLNNNK--FSQNLPENIGSTGALYVTFANNEFTGPIPSSIGRAKYLLEVL  325 (493)
Q Consensus       252 ~~L~Ls~n~-l~~~-~p~~~~~--~~L~~L~L~~n~--l~~~~p~~~~~~~~l~L~l~~n~l~~~~p~~l~~l~~L~~L~  325 (493)
                      ++|+|++|. ++.. +...+..  .+|+.|+++++.  ++..                      .+...+.++++|++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~----------------------~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----------------------DLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----------------------HHHHHHHHCTTCSEEE
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccc----------------------cccccccccccccccc
Confidence            888888864 3321 1111221  267788777642  2110                      1112234567888899


Q ss_pred             hccc-cccCCCcccccCCCCCcEEEecCC-CCCCCCcccccCCCCCCEEEcccCCCCC-CcchhhcCCCCCcEEeeeCCc
Q 011101          326 FLNN-FFTGCLPYEIGFLSNSTVFDVGNN-RLTGPIPHSFGCLSSMQYLNLAMNQFYG-PVPEIVCQLPKLVNLSLSYNY  402 (493)
Q Consensus       326 L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~  402 (493)
                      +++| .+++.....+..+++|++|+|++| .+++.....+..+++|++|+++++ +++ .+......+++|   ++..++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~  257 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSH  257 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCC
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCcc
Confidence            9886 466666677888999999999995 677666677888999999999998 443 333323345554   567778


Q ss_pred             CCCC
Q 011101          403 FTQV  406 (493)
Q Consensus       403 l~~~  406 (493)
                      ++.+
T Consensus       258 ls~~  261 (284)
T d2astb2         258 FTTI  261 (284)
T ss_dssp             SCCT
T ss_pred             CCCC
Confidence            8775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-14  Score=121.96  Aligned_cols=114  Identities=17%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             hhhhhhhHHHHhccccccCCCcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCc
Q 011101          315 IGRAKYLLEVLFLNNFFTGCLPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLV  394 (493)
Q Consensus       315 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  394 (493)
                      +.+..+|++|+|++|+++. ++..+..+++|+.|+|++|.|+ .+ +.|..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            3455678889999999984 5666678999999999999999 45 4588999999999999999865555567799999


Q ss_pred             EEeeeCCcCCCCCc--cccCCCCCCEEEeeCCcCCCCCC
Q 011101          395 NLSLSYNYFTQVGP--ECRKLIKRKVLDVRMNCILDLPN  431 (493)
Q Consensus       395 ~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp~  431 (493)
                      .|++++|+|+.+..  .+..+++|++|++++|.++.++.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccc
Confidence            99999999998753  67889999999999999988875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.1e-11  Score=106.27  Aligned_cols=104  Identities=14%  Similarity=0.063  Sum_probs=80.7

Q ss_pred             HHHhccccccCCCcccccCCCCCcEEEecCC-CCCCCCcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCC
Q 011101          323 EVLFLNNFFTGCLPYEIGFLSNSTVFDVGNN-RLTGPIPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYN  401 (493)
Q Consensus       323 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  401 (493)
                      .++.+++.+. ..+..+..+++|++|++++| .++..-+..|.++++|+.|+|++|+|+...+..|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3455566655 45666777888889998766 477555667888889999999999988766778888889999999999


Q ss_pred             cCCCCCccccCCCCCCEEEeeCCcCC
Q 011101          402 YFTQVGPECRKLIKRKVLDVRMNCIL  427 (493)
Q Consensus       402 ~l~~~~~~~~~l~~L~~L~L~~N~l~  427 (493)
                      +|+.++.......+|+.|+|++|.|.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCcccChhhhccccccccccCCCccc
Confidence            99888776555557888999888774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.5e-13  Score=123.12  Aligned_cols=64  Identities=22%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             cccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC
Q 011101          219 KMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS  285 (493)
Q Consensus       219 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~  285 (493)
                      .++..+++|++|+|++|.|+. ++ .+.++++|++|+|++|.++ .++...... +|++|++++|+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            344455555555555555542 22 3555555666666555554 333332222 4555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=2e-13  Score=122.22  Aligned_cols=56  Identities=14%  Similarity=0.235  Sum_probs=38.9

Q ss_pred             CCEEECcCC--CCCCCCcccccCCCCCcEEEcccccCCCCCCcccccc-ccCEEEccCccCC
Q 011101          227 LYELDVSNN--KLFGGFPMEVVNIKNLTFLDLRFNSFSGPVPAEIFYL-DLDVLFLNNNKFS  285 (493)
Q Consensus       227 L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~  285 (493)
                      ++.+++.++  .+ ..++.++..+++|++|+|++|+|+ .++. +... +|++|+|++|.+.
T Consensus        25 ~~~~~l~~~~~~i-~~l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          25 AEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             CSCEECCBCCTTC-CCCHHHHHHTTTCCEEECSEEEES-CCCC-HHHHTTCCEEECCEEEEC
T ss_pred             cceeeeecccCch-hhhhhHHhcccccceeECcccCCC-Cccc-ccCCccccChhhcccccc
Confidence            445555543  23 345677888999999999999988 5543 3333 8888888888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.6e-11  Score=102.88  Aligned_cols=103  Identities=18%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             EEEcCCCCcCCCCCccchhhhCCCcCcEEEccCCc-CCCccCcccCCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEc
Q 011101          178 GVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNN-FTKSIPKMTSKLKFLYELDVSNNKLFGGFPMEVVNIKNLTFLDL  256 (493)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  256 (493)
                      .++++++++..    .+..+..+++|++|++.+|+ ++..-+..|.++++|++|+|++|+|+...+.+|.++++|++|+|
T Consensus        12 ~l~c~~~~~~~----~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          12 GLRCTRDGALD----SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             CEECCSSCCCT----TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             eEEecCCCCcc----CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            35566666665    67778889999999998765 87666678999999999999999999888889999999999999


Q ss_pred             ccccCCCCCCcccc-ccccCEEEccCccCC
Q 011101          257 RFNSFSGPVPAEIF-YLDLDVLFLNNNKFS  285 (493)
Q Consensus       257 s~n~l~~~~p~~~~-~~~L~~L~L~~n~l~  285 (493)
                      ++|+|+ .++...+ ..+|+.|+|++|.+.
T Consensus        88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999 5665544 449999999999885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.3e-08  Score=87.05  Aligned_cols=81  Identities=20%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             cCCCCCcEEEecCCCCCCC--CcccccCCCCCCEEEcccCCCCCCcchhhcCCCCCcEEeeeCCcCCCCCc--------c
Q 011101          340 GFLSNSTVFDVGNNRLTGP--IPHSFGCLSSMQYLNLAMNQFYGPVPEIVCQLPKLVNLSLSYNYFTQVGP--------E  409 (493)
Q Consensus       340 ~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--------~  409 (493)
                      ..+++|++|+|++|+|+..  ++..+..+++|+.|+|++|+|+....-......+|+.|++++|.++....        .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4577888888888888843  23445678888888888888885433334445678888888888876432        1


Q ss_pred             ccCCCCCCEEE
Q 011101          410 CRKLIKRKVLD  420 (493)
Q Consensus       410 ~~~l~~L~~L~  420 (493)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            46688888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.8e-08  Score=84.09  Aligned_cols=86  Identities=17%  Similarity=0.088  Sum_probs=64.7

Q ss_pred             chhhhhhhhhHHHHhccccccCC--CcccccCCCCCcEEEecCCCCCCCCcccccCCCCCCEEEcccCCCCCCcc-----
Q 011101          312 PSSIGRAKYLLEVLFLNNFFTGC--LPYEIGFLSNSTVFDVGNNRLTGPIPHSFGCLSSMQYLNLAMNQFYGPVP-----  384 (493)
Q Consensus       312 p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-----  384 (493)
                      ......+++|++|+|++|+++..  ++..+..+++|+.|+|++|.|+..-.-.+....+|+.|++++|.++....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            34446788899999999999854  23557789999999999999994322233344579999999999986543     


Q ss_pred             --hhhcCCCCCcEEe
Q 011101          385 --EIVCQLPKLVNLS  397 (493)
Q Consensus       385 --~~l~~l~~L~~L~  397 (493)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2356789999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=2.1e-05  Score=66.75  Aligned_cols=64  Identities=13%  Similarity=0.021  Sum_probs=26.9

Q ss_pred             CCCCCCEEEcccCCCCC----CcchhhcCCCCCcEEeeeCCcCCCC-----CccccCCCCCCEEEeeCCcCCC
Q 011101          365 CLSSMQYLNLAMNQFYG----PVPEIVCQLPKLVNLSLSYNYFTQV-----GPECRKLIKRKVLDVRMNCILD  428 (493)
Q Consensus       365 ~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~~  428 (493)
                      ..+.|++|+|++|.+..    .+...+...+.|++|+|++|.|+..     ...+....+|++|++++|.+..
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            33445555555544432    1112223334455555555544431     1123344445555555544443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=2.2e-05  Score=66.72  Aligned_cols=89  Identities=15%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             cceEEEEcCCC-CcCCCCC-ccchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----Ccc
Q 011101          174 KAVAGVDFNGY-RFNGPDF-SLSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----FPM  243 (493)
Q Consensus       174 ~~l~~L~L~~n-~l~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  243 (493)
                      .+++.|+|+++ .++...+ .+-..+...+.|++|+|++|.+...    +...+...+.|++|+|++|.++..    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45777777763 3443100 1223455666777777777777532    223344556677777777776532    222


Q ss_pred             cccCCCCCcEEEcccccCC
Q 011101          244 EVVNIKNLTFLDLRFNSFS  262 (493)
Q Consensus       244 ~l~~l~~L~~L~Ls~n~l~  262 (493)
                      .+...++|++|+|++|.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSC
T ss_pred             HHHhCCcCCEEECCCCcCC
Confidence            3455566777777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.71  E-value=7.6e-05  Score=63.03  Aligned_cols=83  Identities=16%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             cceEEEEcCC-CCcCCCCC-ccchhhhCCCcCcEEEccCCcCCCc----cCcccCCCCCCCEEECcCCCCCCC----Ccc
Q 011101          174 KAVAGVDFNG-YRFNGPDF-SLSDFLEKLEDLAIFHANSNNFTKS----IPKMTSKLKFLYELDVSNNKLFGG----FPM  243 (493)
Q Consensus       174 ~~l~~L~L~~-n~l~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~  243 (493)
                      ..++.|+|++ +.++...+ .+-..+...++|++|++++|.++..    +-..+...+.|+.|++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566666665 34443110 1223345566666777776666532    223344456666666666666422    223


Q ss_pred             cccCCCCCcEEEc
Q 011101          244 EVVNIKNLTFLDL  256 (493)
Q Consensus       244 ~l~~l~~L~~L~L  256 (493)
                      .+...++|+.++|
T Consensus        97 ~l~~~~~L~~l~L  109 (166)
T d1io0a_          97 ALQSNTSLIELRI  109 (166)
T ss_dssp             GGGGCSSCCEEEC
T ss_pred             HHHhCccccEEee
Confidence            4445566665444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.66  E-value=3.7e-05  Score=65.10  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             hhhHHHHhcc-ccccCC----CcccccCCCCCcEEEecCCCCCCC----CcccccCCCCCCEEEcccCCCCCC----cch
Q 011101          319 KYLLEVLFLN-NFFTGC----LPYEIGFLSNSTVFDVGNNRLTGP----IPHSFGCLSSMQYLNLAMNQFYGP----VPE  385 (493)
Q Consensus       319 ~~L~~L~L~~-n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~  385 (493)
                      ++|++|++++ +.++..    +-..+...++|++|+|++|.++..    +...+.....|+.|++++|.++..    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4555555554 233321    223345667788888888887643    223445567888888888877643    224


Q ss_pred             hhcCCCCCcEEee--eCCcCCC-----CCccccCCCCCCEEEeeCCc
Q 011101          386 IVCQLPKLVNLSL--SYNYFTQ-----VGPECRKLIKRKVLDVRMNC  425 (493)
Q Consensus       386 ~l~~l~~L~~L~L--s~N~l~~-----~~~~~~~l~~L~~L~L~~N~  425 (493)
                      .+...++|+.++|  ++|.+..     +...+...++|+.|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            4556677776544  4566654     22245667788888887653