Citrus Sinensis ID: 011118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHcccHHcccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHcc
Coil and Loop (DISEMBL)
meseplivqeqpAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESAsialfgpivghwvDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVIseghppealtKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIrrsmpidmeqstsmpreresllsHDENNAELAEKRWRWKIIDwisnapcvgawQVYLKQEVVLPGVSLALLFFTVLSFGTLMtatlewegiPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQdlvpesdrcvvggvqnSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Flexible Loop (DISEMBL)
MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALaessqrrirrsmpidmeqstsmpreresllsHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Low Complexity Region (SEG)
MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYiigiargisatigiaatiLYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Disordered region (IsUnstruct)
*********EQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPAL***************************************AEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLL****
Disordered Region (DISOPRED)
******************TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIP*************************************************IIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQ*********RCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASV*
Disordered Region (DISEMBL)
MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPID****************HDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Disordered Region (DISPRO)
******I*QEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAES****************************************WRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
F4KGN5	512	Solute carrier family 40	yes	no	0.965	0.929	0.654	0.0
O80905	524	Solute carrier family 40	no	no	0.955	0.898	0.641	0.0
Q5Z922	484	Solute carrier family 40	yes	no	0.943	0.960	0.585	1e-153
Q923U9	570	Solute carrier family 40	yes	no	0.906	0.784	0.299	8e-62
Q9NP59	571	Solute carrier family 40	yes	no	0.902	0.779	0.300	2e-58
Q9I9R3	562	Solute carrier family 40	yes	no	0.922	0.809	0.293	5e-57
Q9JHI9	570	Solute carrier family 40	yes	no	0.732	0.633	0.313	4e-48
Q8W4E7	598	Solute carrier family 40	no	no	0.906	0.747	0.251	9e-23
Q2QNK7	591	Solute carrier family 40	no	no	0.886	0.739	0.243	1e-20
B9FGV7	593	Solute carrier family 40	no	no	0.862	0.716	0.236	9e-17

>sp|F4KGN5|S40A2_ARATH Solute carrier family 40 member 2 OS=Arabidopsis thaliana GN=IREG2 PE=2 SV=1

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/478 (65%), Positives = 378/478 (79%), Gaps = 2/478 (0%)

Query: 12  PAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGP 71
           P++   +   LY+ +FLARWGAR WEFSV LYMI +WP+SL   A+YG VES S  LFGP
Sbjct: 27  PSLPRSMVISLYLGYFLARWGARTWEFSVALYMIYLWPNSLFLTAMYGVVESGSATLFGP 86

Query: 72  IVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNIS 131
           IVG  +D ++YVKVL++WLVTQNLSFIVAG +V+ LL    LKS NF  F  LV+LTN+S
Sbjct: 87  IVGQMIDGMSYVKVLRLWLVTQNLSFIVAGGAVVALLVVPDLKSQNFPVFATLVVLTNLS 146

Query: 132 GAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISF 191
           GA+GV+STLAGT+LIER+WVVV+SEGH P  LT+MNS+IR IDL+ KLL+P ITG IISF
Sbjct: 147 GAIGVLSTLAGTVLIERDWVVVMSEGHSPAVLTRMNSVIRGIDLSSKLLSPVITGLIISF 206

Query: 192 VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRE 251
           VSL+ASA+T A W T+TVW+EYWLF+SVY G+PA+ +S +RR  RS     E++ S    
Sbjct: 207 VSLRASAITFAAWATITVWIEYWLFISVYNGVPAIVQSDERRSLRSSQSQAEETDSASSF 266

Query: 252 RESLLSHDENNAELAEKRWR-WKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVL 310
              LL H+E +    + R R  +I++ IS +  V AW+ YL QE+VLPGVSLALLFFTVL
Sbjct: 267 YVPLL-HEEESYRNTQSRSRILRILERISESSFVSAWRNYLNQEIVLPGVSLALLFFTVL 325

Query: 311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWF 370
           SFGTLMTATLEW+GIP YIIGI RGISA +G+AAT+LYP++QSRIS LRTG+WS WSQW 
Sbjct: 326 SFGTLMTATLEWKGIPTYIIGIGRGISAGVGLAATVLYPLMQSRISPLRTGVWSFWSQWT 385

Query: 371 CLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQN 430
           CLL+CV SIW+    +A+YMLM GVA SRLGLWMFDL+VIQQMQDLVPESDRCVVGGVQN
Sbjct: 386 CLLVCVGSIWVEKEKIASYMLMAGVAASRLGLWMFDLAVIQQMQDLVPESDRCVVGGVQN 445

Query: 431 SLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKL 488
           SLQS +DLMA  +GII+SNP+DFW L LIS   V+LA ILYT HLYRIRKHLFH +K+
Sbjct: 446 SLQSALDLMANLLGIIVSNPKDFWMLTLISFATVSLAGILYTIHLYRIRKHLFHLEKI 503

Vacuolar transporter that is involved in the transport of excess nickel into the vacuole under iron deficiency, increasing cellular tolerance to nickel under iron deficiency stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|O80905|S40A1_ARATH Solute carrier family 40 member 1 OS=Arabidopsis thaliana GN=IREG1 PE=3 SV=1

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/483 (64%), Positives = 377/483 (78%), Gaps = 12/483 (2%)

Query: 12  PAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGP 71
           PA+      YLYV +FLARW AR WEFSV LYMI +WP+SLL AAIYGA+ES S A+FGP
Sbjct: 31  PALRRRFVIYLYVGYFLARWSARTWEFSVALYMIHLWPNSLLLAAIYGAIESGSTAIFGP 90

Query: 72  IVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNIS 131
           IVG WV+ + YVKVL++WL+ QNLS+ +AG +VI LL  S LKS N   F +L++LTN++
Sbjct: 91  IVGQWVEGMDYVKVLRLWLLFQNLSYTIAGGAVIKLLLVSDLKSRNLPVFAILIVLTNLA 150

Query: 132 GAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISF 191
           GA+GV+STLAGTILIER+W VV+SEGHPP  LTKMNS+IR IDL+ KLL+P ITG IISF
Sbjct: 151 GAIGVLSTLAGTILIERDWAVVMSEGHPPAVLTKMNSVIRGIDLSSKLLSPVITGLIISF 210

Query: 192 VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTS---- 247
           VSL+ASA+T A W T+T WVEYWLF+SVY G+PA+  S++RRI RS    +E   +    
Sbjct: 211 VSLKASAITFAAWATITAWVEYWLFISVYSGVPAITRSNERRILRSRTKQVEGRDAPVSV 270

Query: 248 --MPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL 305
             +P   E    +  +   +        I+D +S +  VGAW++Y  QEVVLPGVSLALL
Sbjct: 271 SIVPGTEEGYTGNPPSRTGIL------VILDRMSKSSFVGAWRIYFNQEVVLPGVSLALL 324

Query: 306 FFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSI 365
           FFTVLSFGTLMTATL+WEGIP YIIGI RGISAT+G+AAT++YP++QSR+STLRTGLWS 
Sbjct: 325 FFTVLSFGTLMTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLSTLRTGLWSF 384

Query: 366 WSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVV 425
           WSQW CLL+CV SIW+    +A+YMLM GVA SRLGLWMFDL+VIQQMQDLV ESDRCVV
Sbjct: 385 WSQWSCLLVCVGSIWVKKDKIASYMLMAGVAASRLGLWMFDLAVIQQMQDLVSESDRCVV 444

Query: 426 GGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHF 485
           GGVQNSLQS +DLMAY +GII+SNP+DFW L LIS   V+LA +LYT HLYRIR H+FH 
Sbjct: 445 GGVQNSLQSALDLMAYLLGIIVSNPKDFWILTLISFSTVSLAGMLYTIHLYRIRNHIFHL 504

Query: 486 DKL 488
           +K+
Sbjct: 505 EKI 507

May be involved in iron transport and iron homeostasis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z922|S40A1_ORYSJ Solute carrier family 40 member 1 OS=Oryza sativa subsp. japonica GN=Os06g0560000 PE=2 SV=1

 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/490 (58%), Positives = 363/490 (74%), Gaps = 25/490 (5%)

Query: 3   SEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVE 62
           + PL+        + L   LYV HFLARWGARMWEFSVGLYMI +WP SLL  A+YG VE
Sbjct: 8   AAPLLDGGGGVDDAALLRRLYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVE 67

Query: 63  SASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSS-LKSTNFIAF 121
           ++++A  GPIVG  VD+L Y++VL++WL+ Q  SF+ AGVSV  LL + + L +  F AF
Sbjct: 68  ASAVAALGPIVGAVVDRLAYLQVLRLWLLLQGASFVAAGVSVTALLVYGARLAAAGFPAF 127

Query: 122 VLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA 181
           V LV++TN+SGA+  +STLAGTILIEREWVVVI+ G P   LT +NS+IRRIDL+CKLLA
Sbjct: 128 VALVVVTNVSGALAALSTLAGTILIEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLA 187

Query: 182 PAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPID 241
           P ++GF ISFVS++ASA  LA W    VWV+YWLF+SVY G PAL+E+SQ   RR+   D
Sbjct: 188 PVLSGFFISFVSMEASAAALAAWNLAAVWVQYWLFVSVYAGFPALSETSQISRRRAD-DD 246

Query: 242 MEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVS 301
              + + P++ E L                     W++  PC  +W VY +QEVVLPGV+
Sbjct: 247 EAAAAAQPQKVERL---------------------WMTMLPCWESWAVYARQEVVLPGVA 285

Query: 302 LALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTG 361
           LA L+FTVLSFGTLMTATL+WEGIPAY+I +ARG+SA +GIAAT +YP   +R+STLR G
Sbjct: 286 LAFLYFTVLSFGTLMTATLDWEGIPAYVISLARGVSAAVGIAATWVYPAAHARVSTLRAG 345

Query: 362 LWSIWSQWFCLLICVASIWIHNS--LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPE 419
           LWSIW+QW CLL+CVAS+W   +  L +A+MLM GVA SRLGLWMFDL+V+Q MQD VPE
Sbjct: 346 LWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGGVAASRLGLWMFDLAVMQLMQDGVPE 405

Query: 420 SDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIR 479
           SDRCVVGGVQNSLQS  DL+ Y MGII+S+P+DF +LI++S  +VT AA +YT H+YR+R
Sbjct: 406 SDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFGELIVLSFFLVTCAAAMYTMHVYRVR 465

Query: 480 KHLFHFDKLL 489
           KHLFH D++L
Sbjct: 466 KHLFHLDRIL 475

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q923U9|S40A1_RAT Solute carrier family 40 member 1 OS=Rattus norvegicus GN=Slc40a1 PE=2 SV=2

 Score =  238 bits (607), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 160/534 (29%), Positives = 265/534 (49%), Gaps = 87/534 (16%)

Query: 13  AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
           ++ ++LT+    LY+ H L+ WG RMW F+V ++++ ++ + LL  A+YG V + S+ + 
Sbjct: 16  SLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNGLLLTAVYGLVVAGSVLVL 75

Query: 70  GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNF-------IAFV 122
           G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ ++F    +  N        + ++
Sbjct: 76  GAIIGDWVDKNARLKVAQTSLVVQNVSVILCGI-ILMMVFLHKNELLNMYHGWVLTVCYI 134

Query: 123 LLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAP 182
           L++ + NI+     +++ A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP
Sbjct: 135 LIITIANIAN----LASTATAITIQRDWIVVVA-GENRSRLADMNATIRRIDQLTNILAP 189

Query: 183 AITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDM 242
              G I++F S       ++ W  V++ VEY+L   VY+  PALA  +  ++  S   ++
Sbjct: 190 MAVGQIMTFGSPVIGCGFISGWNLVSMCVEYFLLWKVYQKTPALAVKAALKVEES---EL 246

Query: 243 EQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVG-----------AWQVYL 291
           +Q TS P++ E      E    + EK    + ++      C              W  Y 
Sbjct: 247 KQLTS-PKDTEP--KPLEGTHLMGEKDSNIRELECEQEPTCASQIAEPFRTFRDGWVSYY 303

Query: 292 KQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPIL 351
            Q V L G+ LA L+ TVL F  + T     +G+   I+ +  G SA  GI  T+ +  L
Sbjct: 304 NQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSVLMGASAITGIMGTVAFTWL 363

Query: 352 QSRISTLRTGLWSIWSQWFCLLICVASI--------------------WIHNSLVAAY-- 389
           + +   +RTGL+S  +Q  CL++CV S+                    +IH   V++   
Sbjct: 364 RRKCGLVRTGLFSGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIHEEAVSSTTK 423

Query: 390 --------------------------------MLMVGVATSRLGLWMFDLSVIQQMQDLV 417
                                           +L  GV  +R+GLW FDL+V Q +Q+ V
Sbjct: 424 IPETEMLMSNVSNVVNTVHEMSTKSVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENV 483

Query: 418 PESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILY 471
            ES+R ++ GVQNS+   +DL+ + M I+  NP+ F  L+LISV  V +  ++Y
Sbjct: 484 IESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHLMY 537

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Rattus norvegicus (taxid: 10116)

>sp|Q9NP59|S40A1_HUMAN Solute carrier family 40 member 1 OS=Homo sapiens GN=SLC40A1 PE=1 SV=1

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 250/516 (48%), Gaps = 71/516 (13%)

Query: 22  LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
           LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ + G I+G WVDK  
Sbjct: 28  LYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNA 87

Query: 82  YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIA------FVLLVILTNISGAVG 135
            +KV Q  LV QN+S I+ G+ ++ +        T +        ++L++ + NI+    
Sbjct: 88  RLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYILIITIANIAN--- 144

Query: 136 VISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQ 195
            +++ A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP   G I++F S  
Sbjct: 145 -LASTATAITIQRDWIVVVA-GEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGSPV 202

Query: 196 ASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRS--MPIDMEQSTS-MPRER 252
                ++ W  V++ VEY L   VY+  PALA  +  +   +    +++ + T   P E 
Sbjct: 203 IGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHKDTEPKPLEG 262

Query: 253 ESLLSHDENNAELAEKRWRWKIIDWISNA--PCVGAWQVYLKQEVVLPGVSLALLFFTVL 310
             L+   ++N    E          ++         W  Y  Q V L G+ LA L+ TVL
Sbjct: 263 THLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVL 322

Query: 311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWF 370
            F  + T     +G+   I+ I  G SA  GI  T+ +  L+ +   +RTGL S  +Q  
Sbjct: 323 GFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGLAQLS 382

Query: 371 CLLICVAS---------------------------------------IWIHNS------- 384
           CL++CV S                                       I++ N        
Sbjct: 383 CLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEIYMSNGSNSANIV 442

Query: 385 ---------LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQST 435
                    +++  +L  GV  +R+GLW FDL+V Q +Q+ V ES+R ++ GVQNS+   
Sbjct: 443 PETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYL 502

Query: 436 MDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILY 471
           +DL+ + M I+  NP+ F  L+LISV  V +  I+Y
Sbjct: 503 LDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMY 538

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Homo sapiens (taxid: 9606)

>sp|Q9I9R3|S40A1_DANRE Solute carrier family 40 member 1 OS=Danio rerio GN=slc40a1 PE=2 SV=2

 Score =  222 bits (565), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 155/529 (29%), Positives = 260/529 (49%), Gaps = 74/529 (13%)

Query: 22  LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
           +YV H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ L G I+G WVDK  
Sbjct: 25  IYVGHALSTWGDRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNP 84

Query: 82  YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNF------IAFVLLVILTNISGAVG 135
            +KV Q  LV QN + I+ G  ++ +  F    S+ +        +++++ + NI+    
Sbjct: 85  RLKVAQTSLVVQNSAVILCGALLMAVFQFKQQLSSMYDGWLLTTCYIMVISIANIAN--- 141

Query: 136 VISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQ 195
            +++ A +I I+R+WVVV++ G     L  MN+ +R ID    +LAP + G I++F S  
Sbjct: 142 -LASTAMSITIQRDWVVVVA-GDDRSKLADMNATVRIIDQLTNILAPMLVGQIMAFGSHF 199

Query: 196 ASAMTLAIWTTVTVWVEYWLFMSVYKGIPALA-----ESSQRRIRRSMPIDME-QSTSMP 249
                ++ W   ++ +EY+L   VY+  PALA     + S  +  + + I  E  +T  P
Sbjct: 200 IGCGFISGWNLFSMCLEYFLLWKVYQKTPALAFKAGQKDSDDQELKHLNIQKEIGNTESP 259

Query: 250 RERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV 309
            E   L++  E++    +    +++ + I        W  Y  Q +   G+SLA L+ TV
Sbjct: 260 VEASQLMT--ESSEPKKDTGCCYQMAEPIRTFK--DGWVAYYNQSIFFAGMSLAFLYMTV 315

Query: 310 LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQW 369
           L F  + T     +G+   ++ +  G SA  GI  T+ +  ++ +   +RTG  +  +Q 
Sbjct: 316 LGFDCITTGYAYTQGLNGSVLSLLMGASAVSGICGTVAFTWIRKKCGLIRTGFIAGVTQL 375

Query: 370 FCLLICVASIWIHNS--------------------------------------------- 384
            CL +CVAS++   S                                             
Sbjct: 376 SCLTLCVASVFAPGSPFDLSVSPFEEVLRHLFGDSGSLRESPTFIPTTEPPIQANVTVFE 435

Query: 385 ---LVAAYM----LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD 437
               V +YM    L  GV  +R+GLW FDL+V Q +Q+ V ES+R V+ GVQNS+   +D
Sbjct: 436 EAPPVESYMSVGLLFAGVIAARVGLWSFDLTVTQLIQENVIESERGVINGVQNSMNYLLD 495

Query: 438 LMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYR-IRKHLFHF 485
           L+ + M I+  NP+ F  L++ISV  V +  ++Y    Y+ +   LF F
Sbjct: 496 LLHFIMVILAPNPEAFGLLVIISVSFVAMGHMMYFRFAYKSLGSRLFLF 544

May be involved in iron export and also in transfer of iron between maternal and fetal circulation.

Danio rerio (taxid: 7955)

>sp|Q9JHI9|S40A1_MOUSE Solute carrier family 40 member 1 OS=Mus musculus GN=Slc40a1 PE=1 SV=1

 Score =  192 bits (489), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 207/392 (52%), Gaps = 31/392 (7%)

Query: 13  AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
           ++ ++LT+    LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ + 
Sbjct: 16  SLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVL 75

Query: 70  GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNF------IAFVL 123
           G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ +    +   T +      + ++L
Sbjct: 76  GAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYIL 135

Query: 124 LVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPA 183
           ++ + NI+     +++ A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP 
Sbjct: 136 IITIANIAN----LASTATAITIQRDWIVVVA-GENRSRLADMNATIRRIDQLTNILAPM 190

Query: 184 ITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDME 243
             G I++F S       ++ W  V++ VEY+L   VY+  PALA  +  ++  S   +++
Sbjct: 191 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYFLLWKVYQKTPALAVKAALKVEES---ELK 247

Query: 244 QSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVG-----------AWQVYLK 292
           Q TS P++ E      E    + EK    + ++      C              W  Y  
Sbjct: 248 QLTS-PKDTEP--KPLEGTHLMGEKDSNIRELECEQEPTCASQMAEPFRTFRDGWVSYYN 304

Query: 293 QEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQ 352
           Q V L G+ LA L+ TVL F  + T     +G+   I+ I  G SA  GI  T+ +  L+
Sbjct: 305 QPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLR 364

Query: 353 SRISTLRTGLWSIWSQWFCLLICVASIWIHNS 384
            +   +RTGL+S  +Q  CL++CV S+++  S
Sbjct: 365 RKCGLVRTGLFSGLAQLSCLILCVISVFMPGS 396

May be involved in iron export from duodenal epithelial cell and also in transfer of iron between maternal and fetal circulation. Mediates iron efflux in the presence of a ferroxidase (hephaestin and/or ceruloplasmin).

Mus musculus (taxid: 10090)

>sp|Q8W4E7|S40A3_ARATH Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1

 Score =  108 bits (270), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 224/504 (44%), Gaps = 57/504 (11%)

Query: 2   ESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAV 61
           E E  ++   PA    L   LY +  +     ++W F+    +  ++P SLL  A+ G V
Sbjct: 133 EEEQTVIAATPAHPEGLYV-LYASCLVGNLVEQLWNFAWPSAIAMLYP-SLLPVAVMGFV 190

Query: 62  ESASIALFGPIVGHWVDK----LTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTN 117
              +I   GP+VG ++D      TY+ +  I    Q LS   AG+ +      S+  S+ 
Sbjct: 191 TKLAIIAGGPVVGKFMDYSPRVPTYISLNVIQAAAQVLS---AGMIIHAYTVPSTSASSI 247

Query: 118 FIA---FVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID 174
            +    F LL      +GA+  +  +A  + IER+WVV+++  + P AL + N+++ RID
Sbjct: 248 LLQPWFFALL-----FAGAIDSLCGIASGVAIERDWVVLLAGINRPIALAQANAVLHRID 302

Query: 175 LTCKLLAPAITGFIISF---VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQ 231
           L C++    + G ++S    V+    A TL + +  T+    WL      G+        
Sbjct: 303 LLCEIAGTMLFGILLSKYDPVTCLKFAATLMVGSLPTMTALIWLTNKFSSGV-------- 354

Query: 232 RRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYL 291
                           + R + SL     N+      R     I  I        W+ Y+
Sbjct: 355 ----------------LDRPKCSL-----NSCSAEGSRTNTDSIFDIGMETIKLGWKEYI 393

Query: 292 KQEVVLPGVSLALLFFT-VLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPI 350
           +Q V+   ++  LL+F  VL+ G+LMTA L    +   +IG   G+ A +G+AAT L   
Sbjct: 394 QQPVLPASLAYVLLYFNIVLTPGSLMTAFLTQRCVNPSVIGGFSGLCAVMGVAATFLSAN 453

Query: 351 LQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAA---YMLMVGVATSRLGLWMFDL 407
           L  R+  L+ G   ++ Q   L + VA ++  +SL      +  +  +  SRLG   + +
Sbjct: 454 LVKRVGILKAGAVGLFFQASLLAVAVA-VYCSSSLSHKSPLFFFLSMIVLSRLGHMSYGV 512

Query: 408 SVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLA 467
              Q +Q  +P S   ++G  + S+ S  + +   + I  ++   F  L ++S++ V  A
Sbjct: 513 VGAQILQTGIPSSKANLIGATEISVASLAESLMLGVAIAANDASHFGFLAVLSLLSVVAA 572

Query: 468 AILYTFHLYRI---RKHLFHFDKL 488
           ++++   L      ++ LF FD L
Sbjct: 573 SLIFCRLLRNPTDEQRRLFSFDPL 596

Probable plastid transporter that may play a role in iron chelation, storage or sequestration under limiting iron conditions. In presence of exogenous antibiotics, may allow opportunistic entry of multiple aminoglycoside antibiotics into the chloroplast.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QNK7|S40A2_ORYSJ Solute carrier family 40 member 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os12g0562100 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 210/473 (44%), Gaps = 36/473 (7%)

Query: 22  LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
           LY ++       ++W F+    +  + P SLL  AI G     S+ +  PIVG  +D   
Sbjct: 141 LYASYLFGNLVEQLWNFAWPAALAILHP-SLLPVAIVGFFTKLSVFIGAPIVGKLMDHFP 199

Query: 82  YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLA 141
            + +       Q  + +++   VI  +   +  ST+ +      I    +GA+  ++ LA
Sbjct: 200 RIPMYTGLNAVQVATQLISAAMVIYAMKNVTHASTSAVVLKPWFIALVAAGAIERLAGLA 259

Query: 142 GTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTL 201
             + +ER+WVV+++  + P AL + N+++ R+DL C+ +  ++ G ++S           
Sbjct: 260 LGVAMERDWVVLLAGTNRPVALAQANAVLNRLDLVCETVGASVFGLLLS----------- 308

Query: 202 AIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN 261
                  + +   L +  +  +  L +   R    ++      S+  P E ES+ ++   
Sbjct: 309 KYHPVTCLKIACGLMICSFPVLVVLGQLINRFSCHAL-----DSSRTPSE-ESICAN--- 359

Query: 262 NAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPG-VSLALLFFTV-LSFGTLMTAT 319
              L  ++     +  I N      W  Y KQ+ VLP  V+   L F V L+ G +MTA 
Sbjct: 360 --LLDVRKIVQNGLSAIRNG-----WNEY-KQQTVLPASVATVFLNFNVALAPGAIMTAL 411

Query: 320 LEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI 379
           L   GI   I+G   G+ + +G+ AT +   L  R+  L+ G   +  Q   L + +   
Sbjct: 412 LMHRGISPSIVGAFSGLCSIMGLVATFISSSLVERVGILKAGAAGLIVQASLLSVALVVY 471

Query: 380 WIHN--SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD 437
           W  +        + +  +A SRLG   +D+   Q +Q  VP S   ++GG++ S+ S  +
Sbjct: 472 WTGSISQRTPLLIFLAAIALSRLGHMSYDVVGTQILQTGVPASKANLIGGMEVSISSLAE 531

Query: 438 LMAYTMGIIISNPQDFWKLILISVIVVTLAAILYT---FHLYRIRKHLFHFDK 487
           L+   M II ++   F  L ++SV  V  AA ++     +    ++ LF FD 
Sbjct: 532 LVMLGMAIIANDVSHFGFLAILSVSSVAGAAWMFCQWLGNPTDEQRELFMFDP 584

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B9FGV7|S40A3_ORYSJ Solute carrier family 40 member 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0131500 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 197/474 (41%), Gaps = 49/474 (10%)

Query: 10  EQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
           E PA  + +   LY A        ++W F+    +  + P S+L  A+ G      +   
Sbjct: 140 ETPAYPAAMNA-LYAACLAGNATEQLWNFTWPAAVAVLHPASILPVAVLGFFTKLVVFAA 198

Query: 70  GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVL---LVI 126
           GP+VG  +  L  +   +     Q  + +V   SV T+ +  ++      + +L     +
Sbjct: 199 GPLVGELISSLPRIPAYRSLAAIQTAAHLV---SVATITYAFAVHRAAAASLLLRPWFAV 255

Query: 127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG 186
           L   S AV  ++ +A  I+ ER++VV ++    P AL K N+ + R+DL C+ +  +I  
Sbjct: 256 LV-ASTAVDRLACVALGIIAERDFVVQLAGAGRPVALAKANATLSRVDLLCETVGASIFA 314

Query: 187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQST 246
            ++S    + + +T    + V                             ++P+ +    
Sbjct: 315 LLLS----KNNPLTCIKLSCVISLC-------------------------ALPLLIFLCG 345

Query: 247 SMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCV--GAWQVYLKQEVVLPGVSLAL 304
            M R  + +  H EN    AEK   + I   +  A       W  Y++Q V LP  SLA 
Sbjct: 346 EMNRLADGIFDHSENTTSHAEKTSSFSIRKTVEEAVATVRNGWSEYMRQPV-LP-ASLAY 403

Query: 305 LF--FTV-LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTG 361
           +F  F V L+ G LMT  L  +G+   +IG   G S  +GI AT     L   +  L+ G
Sbjct: 404 VFVCFNVALAPGALMTTFLIHQGVRPSVIGAFGGSSGAVGILATFATARLVKELGILKAG 463

Query: 362 LWSIWSQWFCLLICVASIWIHNSL---VAAYMLMVG-VATSRLGLWMFDLSVIQQMQDLV 417
              + +Q   LL     +++  ++     A    +G +  SR G   +    +Q +Q   
Sbjct: 464 AAGLIAQS-ALLGAAVVVYLTGAVSRRAGALFAFLGLIVASRAGHMAYSAIGLQVVQTGN 522

Query: 418 PESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILY 471
           P S   ++G  + ++ S  +L    + ++ S+   F  L  +S   VT AA +Y
Sbjct: 523 PASKAKLIGATEIAVASLAELAMMAVAVVASDASHFGALAALSATAVTAAAGMY 576


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,153,633
Number of Sequences: 539616
Number of extensions: 6128115
Number of successful extensions: 22258
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 22214
Number of HSP's gapped (non-prelim): 39
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)

May be involved in iron transport and iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
449461749	508	PREDICTED: solute carrier family 40 memb	0.945	0.917	0.751	0.0
449513241	508	PREDICTED: solute carrier family 40 memb	0.945	0.917	0.751	0.0
255571513	506	transporter, putative [Ricinus communis]	0.955	0.930	0.719	0.0
356506502	502	PREDICTED: solute carrier family 40 memb	0.987	0.970	0.701	0.0
356495087	641	PREDICTED: solute carrier family 40 memb	0.963	0.741	0.709	0.0
225439578	497	PREDICTED: solute carrier family 40 memb	0.949	0.941	0.714	0.0
225439580	508	PREDICTED: solute carrier family 40 memb	0.993	0.964	0.699	0.0
297735592	478	unnamed protein product [Vitis vinifera]	0.959	0.989	0.720	0.0
255571511	477	transporter, putative [Ricinus communis]	0.853	0.882	0.760	0.0
297823729	525	predicted protein [Arabidopsis lyrata su	0.973	0.914	0.643	0.0

>gi|449461749|ref|XP_004148604.1| PREDICTED: solute carrier family 40 member 2-like [Cucumis sativus]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/467 (75%), Positives = 405/467 (86%), Gaps = 1/467 (0%)

Query: 22  LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
           LY+ HFLARWGARMWEFSVGLYMISVWP+SLLFAAIYG VESAS A FGPIVG  VDKL 
Sbjct: 25  LYIGHFLARWGARMWEFSVGLYMISVWPNSLLFAAIYGVVESASTAFFGPIVGDLVDKLA 84

Query: 82  YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLA 141
           YVKVL+IWL TQNLS+IVAGV+V+ LLF+S LKS+ F  F+LLVILTNI+GAVG +S+LA
Sbjct: 85  YVKVLKIWLATQNLSYIVAGVTVVALLFYSDLKSSYFTGFILLVILTNIAGAVGALSSLA 144

Query: 142 GTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTL 201
           GTIL+EREWVVVISE HPPE LT +NS +RRIDL CKLL+P I+GFIISF+SL+ASAMTL
Sbjct: 145 GTILVEREWVVVISERHPPEVLTNINSTMRRIDLVCKLLSPVISGFIISFISLKASAMTL 204

Query: 202 AIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN 261
           A+W  ++VW+EYWLF SVY GIPAL ESSQRR+ R    D+ +S+S+ ++ E L+ +D +
Sbjct: 205 AVWNIISVWLEYWLFTSVYDGIPALEESSQRRVSRLALRDVGESSSVSQQIERLIPNDVD 264

Query: 262 NAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLE 321
            A  AE+ W+ K+ +W S  P V AW+VYL+Q+ VLPGV+LALLFFTVLSFGTLMTATLE
Sbjct: 265 -ARSAERSWKVKMFNWFSKVPFVTAWKVYLEQDTVLPGVALALLFFTVLSFGTLMTATLE 323

Query: 322 WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI 381
           WEGIPAYIIGIARG+SATIGIAAT++YPI+QSRI TLRTGLWSIWSQW CLL+CV SIWI
Sbjct: 324 WEGIPAYIIGIARGVSATIGIAATLVYPIVQSRILTLRTGLWSIWSQWTCLLVCVVSIWI 383

Query: 382 HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAY 441
            NSL++AYMLM+GVA SRLGLWMFDL+VIQQMQD VPESDRCVVGG QN+LQSTMDLM Y
Sbjct: 384 QNSLLSAYMLMMGVAVSRLGLWMFDLAVIQQMQDQVPESDRCVVGGAQNALQSTMDLMGY 443

Query: 442 TMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKL 488
            MG+IISNPQDFWKLILIS   VTLAA+LYT HLYRIRKHLFH +KL
Sbjct: 444 VMGVIISNPQDFWKLILISFTAVTLAALLYTIHLYRIRKHLFHMEKL 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513241|ref|XP_004164272.1| PREDICTED: solute carrier family 40 member 2-like [Cucumis sativus]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/467 (75%), Positives = 405/467 (86%), Gaps = 1/467 (0%)

Query: 22  LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
           LY+ HFLARWGARMWEFSVGLYMISVWP+SLLFAAIYG VESAS A FGPIVG  VDKL 
Sbjct: 25  LYIGHFLARWGARMWEFSVGLYMISVWPNSLLFAAIYGVVESASTAFFGPIVGDLVDKLA 84

Query: 82  YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLA 141
           YVKVL+IWL TQNLS+IVAGV+V+ LLF+S LKS+ F  F+LLVILTNI+GAVG +S+LA
Sbjct: 85  YVKVLKIWLATQNLSYIVAGVTVVALLFYSDLKSSYFTGFILLVILTNIAGAVGALSSLA 144

Query: 142 GTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTL 201
           GTIL+EREWVVVISE HPPE LT +NS +RRIDL CKLL+P I+GFIISF+SL+ASAMTL
Sbjct: 145 GTILVEREWVVVISERHPPEVLTNINSTMRRIDLVCKLLSPVISGFIISFISLKASAMTL 204

Query: 202 AIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN 261
           A+W  ++VW+EYWLF SVY GIPAL ESSQRR+ R    D+ +S+S+ ++ E L+ +D +
Sbjct: 205 AVWNIISVWLEYWLFTSVYDGIPALEESSQRRVSRLALGDVGESSSVSQQIERLIPNDVD 264

Query: 262 NAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLE 321
            A  AE+ W+ K+ +W S  P V AW+VYL+Q+ VLPGV+LALLFFTVLSFGTLMTATLE
Sbjct: 265 -ARSAERSWKVKMFNWFSKVPFVTAWKVYLEQDTVLPGVALALLFFTVLSFGTLMTATLE 323

Query: 322 WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI 381
           WEGIPAYIIGIARG+SATIGIAAT++YPI+QSRI TLRTGLWSIWSQW CLL+CV SIWI
Sbjct: 324 WEGIPAYIIGIARGVSATIGIAATLVYPIVQSRILTLRTGLWSIWSQWTCLLVCVVSIWI 383

Query: 382 HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAY 441
            NSL++AYMLM+GVA SRLGLWMFDL+VIQQMQD VPESDRCVVGG QN+LQSTMDLM Y
Sbjct: 384 QNSLLSAYMLMMGVAVSRLGLWMFDLAVIQQMQDQVPESDRCVVGGAQNALQSTMDLMGY 443

Query: 442 TMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKL 488
            MG+IISNPQDFWKLILIS   VTLAA+LYT HLYRIRKHLFH +KL
Sbjct: 444 VMGVIISNPQDFWKLILISFTAVTLAALLYTIHLYRIRKHLFHMEKL 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571513|ref|XP_002526704.1| transporter, putative [Ricinus communis] gi|223534004|gb|EEF35726.1| transporter, putative [Ricinus communis]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/471 (71%), Positives = 402/471 (85%)

Query: 18  LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWV 77
           L T LY+  FLARW +RMWEFSVGLYMI++WP+SL+ AAIYGA ESA+IA+FGP++G W 
Sbjct: 32  LITCLYIGQFLARWDSRMWEFSVGLYMINLWPNSLILAAIYGATESATIAVFGPLIGQWA 91

Query: 78  DKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVI 137
           +KL+YVKVL IWLV QNLSF++AG S+I LL F +LKSTNF AF+ LVILTNISGAVGV+
Sbjct: 92  EKLSYVKVLWIWLVMQNLSFMIAGCSIIVLLVFPTLKSTNFTAFIFLVILTNISGAVGVL 151

Query: 138 STLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQAS 197
           STL GTILIEREW+VVISEGHPP  LTKM+SIIRRIDLTCKLLAP + GFIISFVS++AS
Sbjct: 152 STLGGTILIEREWLVVISEGHPPSVLTKMDSIIRRIDLTCKLLAPLVAGFIISFVSVKAS 211

Query: 198 AMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLS 257
           A TLAIW +  VW+EYWLF SVYKGIPAL ESS+++I R  P ++E+ T++ +E E+L  
Sbjct: 212 ATTLAIWNSTAVWLEYWLFTSVYKGIPALGESSRKKITRLSPSNLEEGTTVTKEPENLHP 271

Query: 258 HDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMT 317
            ++ N  L EK WR ++ +WI+  P VGAW VYL Q+VVLPGV+LALL+FTVLSFGTLMT
Sbjct: 272 QNKENTALVEKGWRRRVSEWIAKGPFVGAWNVYLHQDVVLPGVALALLYFTVLSFGTLMT 331

Query: 318 ATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVA 377
           ATL+W+GIPA++I IARGISATIGIAAT++YPILQSRI TLRTGLWSIWSQW CLL+CV 
Sbjct: 332 ATLKWQGIPAFVIAIARGISATIGIAATVVYPILQSRILTLRTGLWSIWSQWICLLLCVG 391

Query: 378 SIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD 437
           SIW+ N  +AAYMLM GVATSRLGLWMFDLSVIQQMQD VPESDRCVVGGVQNSLQS +D
Sbjct: 392 SIWVQNHHLAAYMLMAGVATSRLGLWMFDLSVIQQMQDHVPESDRCVVGGVQNSLQSFLD 451

Query: 438 LMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKL 488
           L+ Y MGIIISNP+DFW+L L+S   VTLAA+LY+ HL+  RKHLFHF++L
Sbjct: 452 LLGYMMGIIISNPRDFWELTLLSFAAVTLAAVLYSLHLFHARKHLFHFERL 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506502|ref|XP_003522020.1| PREDICTED: solute carrier family 40 member 1-like [Glycine max]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/489 (70%), Positives = 412/489 (84%), Gaps = 2/489 (0%)

Query: 1   MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGA 60
           +  EPL+ Q Q   +S L  +LY+ HFLARWGARMWEFSVGLYMI++WPDSLL+AAIYGA
Sbjct: 7   LRREPLLAQHQETPSS-LINHLYIGHFLARWGARMWEFSVGLYMINIWPDSLLYAAIYGA 65

Query: 61  VESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIA 120
           VESASIALFG I+G WVDKL YVKVLQ+WLVTQNLSF+VAG +V+ LL  SSLK TNF A
Sbjct: 66  VESASIALFGSIIGRWVDKLCYVKVLQLWLVTQNLSFVVAGATVVALLLNSSLKLTNFSA 125

Query: 121 FVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLL 180
           F+L+V+  NI G +GV+STLAGTILIEREW++VISEG PPE LTKMNS+ RRIDLTCKLL
Sbjct: 126 FILMVLTINICGGIGVLSTLAGTILIEREWLLVISEGQPPEFLTKMNSVTRRIDLTCKLL 185

Query: 181 APAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPI 240
           AP +TGFIISFVSL+ASA+TLA+W TV+VWVEYWLF SVYKGIPAL +SSQRR+ R +  
Sbjct: 186 APVVTGFIISFVSLKASAITLALWNTVSVWVEYWLFTSVYKGIPALGQSSQRRMARLLES 245

Query: 241 DMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGV 300
           D E+S     E + LL   + ++EL +++   K+ + IS  P + AW+VYL+QEVVLPG+
Sbjct: 246 DQERSNP-TLEGDRLLPVTDGSSELVDRKCSKKLYEKISEIPYIAAWRVYLQQEVVLPGL 304

Query: 301 SLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRT 360
           +LALLFFTVLSFGTLMTATLEWEGIPAY+IG+ARGISA IGIAATI+YP+LQS IS++RT
Sbjct: 305 ALALLFFTVLSFGTLMTATLEWEGIPAYVIGLARGISALIGIAATIVYPLLQSHISSIRT 364

Query: 361 GLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPES 420
           GLWSIWSQW CLL C+A+IWI N  +++Y+LM  VA SRLGLWMFDLSV+QQMQDLVPES
Sbjct: 365 GLWSIWSQWTCLLPCIAAIWIQNGFLSSYILMGSVAISRLGLWMFDLSVLQQMQDLVPES 424

Query: 421 DRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRK 480
           DR +VGGVQNSLQS MDL+AY MGII+S+P DFWKL L+S + VTLAA LY  H+YR+RK
Sbjct: 425 DRLIVGGVQNSLQSLMDLLAYVMGIILSDPGDFWKLTLLSFLAVTLAAFLYCIHVYRVRK 484

Query: 481 HLFHFDKLL 489
           H+FHFD+++
Sbjct: 485 HIFHFDRVM 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495087|ref|XP_003516412.1| PREDICTED: solute carrier family 40 member 1-like [Glycine max]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/479 (70%), Positives = 406/479 (84%), Gaps = 4/479 (0%)

Query: 9   QEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIAL 68
           QE+P   S L TYLY+ HFLARWGARMWEFSVGLYMI++WP+SLL+AAIYGAVESA+IA+
Sbjct: 16  QEKP---SALITYLYIGHFLARWGARMWEFSVGLYMINIWPESLLYAAIYGAVESAAIAV 72

Query: 69  FGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILT 128
           FGPI+G WVDKL+ V+VL++WLVTQNLSF++AG SV+ LL  SSLKSTNF  F+LLVI+ 
Sbjct: 73  FGPIIGRWVDKLSCVRVLKLWLVTQNLSFVIAGGSVVALLVHSSLKSTNFSIFILLVIII 132

Query: 129 NISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFI 188
           N+ G +GV+STLAGTILIEREW++VISE  PPE LTKMNS+ RRIDL+CKLL P I+GFI
Sbjct: 133 NVCGGIGVLSTLAGTILIEREWLLVISEDQPPELLTKMNSVTRRIDLSCKLLVPVISGFI 192

Query: 189 ISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM 248
           ISFVSL+ASA+TLA+WTTV+VWVEYWLF SVY GIPAL +SSQRR+ R +  DME + + 
Sbjct: 193 ISFVSLKASAITLALWTTVSVWVEYWLFTSVYHGIPALVQSSQRRMERLIQCDMEMN-NQ 251

Query: 249 PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT 308
             E++SLL   ++ +ELA+++ R KI + I   P + AW+VYL+QEVVLPG++LALLFFT
Sbjct: 252 TMEKDSLLPVTDDGSELADRKARKKISERILEIPYIAAWRVYLQQEVVLPGLALALLFFT 311

Query: 309 VLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQ 368
           VLSFGTLMTATLEWEGIP YIIGI+RGISA IGIAAT++YP+LQSRIST+RTGLWSIWSQ
Sbjct: 312 VLSFGTLMTATLEWEGIPEYIIGISRGISAVIGIAATVVYPVLQSRISTIRTGLWSIWSQ 371

Query: 369 WFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGV 428
           W  LL CVA+IWI N  +++Y+LM  VA SRLGLWMFDLSV+QQMQDLV ESDR +VGGV
Sbjct: 372 WSFLLPCVAAIWIQNGFLSSYILMGSVAISRLGLWMFDLSVLQQMQDLVSESDRLIVGGV 431

Query: 429 QNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDK 487
           QNSLQS MDL+AY MGIIIS+P+DFWKL  IS + VTLAA LY  H Y  RKHLFHFD+
Sbjct: 432 QNSLQSLMDLLAYVMGIIISDPRDFWKLTTISFLAVTLAAFLYCIHTYHARKHLFHFDQ 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439578|ref|XP_002265440.1| PREDICTED: solute carrier family 40 member 1 [Vitis vinifera] gi|147811599|emb|CAN63822.1| hypothetical protein VITISV_008777 [Vitis vinifera] gi|297735594|emb|CBI18088.3| unnamed protein product [Vitis vinifera]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/476 (71%), Positives = 395/476 (82%), Gaps = 8/476 (1%)

Query: 14  ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIV 73
           + S L  YLYV HFLARWGARMWEFSVGLYMI++WP+SLL AA+YG VESAS A  GP +
Sbjct: 30  LPSSLIIYLYVGHFLARWGARMWEFSVGLYMINIWPNSLLLAAVYGVVESASTAFLGPSI 89

Query: 74  GHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGA 133
           G W+D+LTYVKVLQ+WL TQNLSF+VAG +V+ LLFFSSLK TN  AF+ +V LTNISGA
Sbjct: 90  GQWLDRLTYVKVLQLWLWTQNLSFVVAGAAVVGLLFFSSLKHTNLAAFITIVALTNISGA 149

Query: 134 VGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS 193
           VGV+STLAG+ILIEREWVVV+SEGHPP+ LT+MNS++RRIDLTCKL AP +TGFIISFVS
Sbjct: 150 VGVLSTLAGSILIEREWVVVMSEGHPPDVLTRMNSVLRRIDLTCKLFAPVVTGFIISFVS 209

Query: 194 LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERE 253
           L+ASAMTLAIW TV+VW++YWL MSVY GIPAL ES+Q+R  +       +STS      
Sbjct: 210 LKASAMTLAIWNTVSVWLQYWLLMSVYNGIPALRESNQKRTSKIAERSAGESTSA----- 264

Query: 254 SLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFG 313
                  N++ LA+  W+ K+I  +    C+ AW VYL+Q+VVL GV+LALL+FTVLSFG
Sbjct: 265 ---CQGVNSSPLADNSWKRKMIKCVWKVLCISAWNVYLRQDVVLSGVALALLYFTVLSFG 321

Query: 314 TLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLL 373
           TLMT  L+WEGIPAY+IGIARGISA IGIAAT +YPILQS ISTLRTGLWSIWSQW  LL
Sbjct: 322 TLMTVALQWEGIPAYVIGIARGISAAIGIAATFVYPILQSHISTLRTGLWSIWSQWAFLL 381

Query: 374 ICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQ 433
           +CVASIWIHN +++AY+ MVGVATSRLGLWMFDLSV QQMQD VPESDRCVVGGVQNSLQ
Sbjct: 382 LCVASIWIHNHIISAYLPMVGVATSRLGLWMFDLSVTQQMQDGVPESDRCVVGGVQNSLQ 441

Query: 434 STMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLL 489
           S +DLMAY MGIIISNPQDFWKL L+S   VT+AA+LYT H YR+RKHLFHF+KLL
Sbjct: 442 SYLDLMAYVMGIIISNPQDFWKLTLLSFSAVTVAALLYTLHTYRVRKHLFHFEKLL 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439580|ref|XP_002265491.1| PREDICTED: solute carrier family 40 member 1-like [Vitis vinifera]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/496 (69%), Positives = 412/496 (83%), Gaps = 6/496 (1%)

Query: 4   EPLIVQEQPAITSF------LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAI 57
           EPL+  E+P  +        L  YLYV HFLARWGARMWEFSVGLYMI++WP+SLL AA+
Sbjct: 9   EPLLPDEEPQPSQHSVLPQSLLMYLYVGHFLARWGARMWEFSVGLYMINIWPNSLLLAAV 68

Query: 58  YGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTN 117
           YG VES S A  GP +G W+D+LTYVKVL++WL  QNLSF+VAGV+V+ LL +S+LK TN
Sbjct: 69  YGVVESGSTAFLGPSIGQWLDRLTYVKVLKLWLWAQNLSFVVAGVAVVGLLVYSNLKYTN 128

Query: 118 FIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC 177
             AF+ LVILTNISGA+GV+STLAGTILIEREWVVVISEGHPP  LTK+NS+IRRIDLTC
Sbjct: 129 LAAFIALVILTNISGAIGVLSTLAGTILIEREWVVVISEGHPPGVLTKLNSVIRRIDLTC 188

Query: 178 KLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRS 237
           KL AP +TG +ISFVSL+ASAMTLAIW T+++W+EYWL  SVY GIPAL+E SQ++I + 
Sbjct: 189 KLFAPVVTGLLISFVSLKASAMTLAIWNTLSIWLEYWLLTSVYNGIPALSERSQKKISKI 248

Query: 238 MPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVL 297
              D  +STS  +E +S  S D  ++ LAE  W+ K+I+W+  A  + AW VYL+Q+VVL
Sbjct: 249 SQGDPGESTSADQEIKSSPSFDGGDSALAENSWKRKMIEWVWKALSISAWTVYLQQDVVL 308

Query: 298 PGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRIST 357
           PG++LALL+FTVLSFGTLMTA LEWEGIPAYIIGI RGISATIGIAAT +YPILQSRIS 
Sbjct: 309 PGLALALLYFTVLSFGTLMTAALEWEGIPAYIIGIGRGISATIGIAATFVYPILQSRISI 368

Query: 358 LRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLV 417
           LRTGLWSIWSQW  LLIC+ASIWI N + +AY+LMVGVATSRLGLWMFDLSVIQQMQD V
Sbjct: 369 LRTGLWSIWSQWAFLLICIASIWIQNHITSAYLLMVGVATSRLGLWMFDLSVIQQMQDHV 428

Query: 418 PESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYR 477
           PESDRCVVGGVQNSLQS +DLMAY MGIIISNPQDFWKL L+S+  VTLAA+LY+ ++YR
Sbjct: 429 PESDRCVVGGVQNSLQSYLDLMAYVMGIIISNPQDFWKLTLLSISAVTLAAVLYSSYIYR 488

Query: 478 IRKHLFHFDKLLASVQ 493
           +RKHLFHF+KL + ++
Sbjct: 489 VRKHLFHFEKLWSRIE 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735592|emb|CBI18086.3| unnamed protein product [Vitis vinifera]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/473 (72%), Positives = 403/473 (85%)

Query: 21  YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL 80
           YLYV HFLARWGARMWEFSVGLYMI++WP+SLL AA+YG VES S A  GP +G W+D+L
Sbjct: 2   YLYVGHFLARWGARMWEFSVGLYMINIWPNSLLLAAVYGVVESGSTAFLGPSIGQWLDRL 61

Query: 81  TYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTL 140
           TYVKVL++WL  QNLSF+VAGV+V+ LL +S+LK TN  AF+ LVILTNISGA+GV+STL
Sbjct: 62  TYVKVLKLWLWAQNLSFVVAGVAVVGLLVYSNLKYTNLAAFIALVILTNISGAIGVLSTL 121

Query: 141 AGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMT 200
           AGTILIEREWVVVISEGHPP  LTK+NS+IRRIDLTCKL AP +TG +ISFVSL+ASAMT
Sbjct: 122 AGTILIEREWVVVISEGHPPGVLTKLNSVIRRIDLTCKLFAPVVTGLLISFVSLKASAMT 181

Query: 201 LAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDE 260
           LAIW T+++W+EYWL  SVY GIPAL+E SQ++I +    D  +STS  +E +S  S D 
Sbjct: 182 LAIWNTLSIWLEYWLLTSVYNGIPALSERSQKKISKISQGDPGESTSADQEIKSSPSFDG 241

Query: 261 NNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATL 320
            ++ LAE  W+ K+I+W+  A  + AW VYL+Q+VVLPG++LALL+FTVLSFGTLMTA L
Sbjct: 242 GDSALAENSWKRKMIEWVWKALSISAWTVYLQQDVVLPGLALALLYFTVLSFGTLMTAAL 301

Query: 321 EWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW 380
           EWEGIPAYIIGI RGISATIGIAAT +YPILQSRIS LRTGLWSIWSQW  LLIC+ASIW
Sbjct: 302 EWEGIPAYIIGIGRGISATIGIAATFVYPILQSRISILRTGLWSIWSQWAFLLICIASIW 361

Query: 381 IHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMA 440
           I N + +AY+LMVGVATSRLGLWMFDLSVIQQMQD VPESDRCVVGGVQNSLQS +DLMA
Sbjct: 362 IQNHITSAYLLMVGVATSRLGLWMFDLSVIQQMQDHVPESDRCVVGGVQNSLQSYLDLMA 421

Query: 441 YTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKLLASVQ 493
           Y MGIIISNPQDFWKL L+S+  VTLAA+LY+ ++YR+RKHLFHF+KL + ++
Sbjct: 422 YVMGIIISNPQDFWKLTLLSISAVTLAAVLYSSYIYRVRKHLFHFEKLWSRIE 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571511|ref|XP_002526703.1| transporter, putative [Ricinus communis] gi|223534003|gb|EEF35725.1| transporter, putative [Ricinus communis]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/421 (76%), Positives = 371/421 (88%)

Query: 33  ARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVT 92
            RMWEFSVGLYMI++WPDSL+ AAIYGA+ESA  ALFGP +G WV++L Y KVL+IWLV 
Sbjct: 14  CRMWEFSVGLYMITLWPDSLILAAIYGAIESAFTALFGPFIGEWVERLAYDKVLRIWLVI 73

Query: 93  QNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVV 152
           QNLSF+VAG +VI L+ FS+LKSTNFIAF+LLV+L NISGAVGV+STLAGTILIEREWVV
Sbjct: 74  QNLSFMVAGCTVILLIAFSTLKSTNFIAFILLVMLINISGAVGVLSTLAGTILIEREWVV 133

Query: 153 VISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVE 212
           VISEGHPP  LT+MNSIIRRIDLTCKLLAP ++GFIISF+S++ASAMTLAIW  + VW+E
Sbjct: 134 VISEGHPPTVLTEMNSIIRRIDLTCKLLAPVVSGFIISFLSVKASAMTLAIWNCIAVWIE 193

Query: 213 YWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRW 272
           YWLF SVY+GIPAL ESS+R+I R +P D+E+++S  RER SLLS +E ++    K WR 
Sbjct: 194 YWLFTSVYQGIPALGESSRRKISRLLPRDLEETSSPSRERLSLLSQNEESSASEGKAWRR 253

Query: 273 KIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGI 332
           K+  W+S APCVGAW+VYL+Q+VVLPGVSLALLFFTVLSFGTLMTATLEWEGIPA++IGI
Sbjct: 254 KLTKWVSKAPCVGAWRVYLQQDVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAFMIGI 313

Query: 333 ARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLM 392
           ARGISA IG+AAT++YP+LQS I TLRTGLWSIWSQW CLL+CVASIW+ N L +AYMLM
Sbjct: 314 ARGISALIGVAATVVYPVLQSHILTLRTGLWSIWSQWTCLLVCVASIWVQNHLFSAYMLM 373

Query: 393 VGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQD 452
            GVATSRLGLWMFDLSVIQQMQD V ES+RCVVGGVQNSLQSTMDL+ Y MGIIISNPQ+
Sbjct: 374 AGVATSRLGLWMFDLSVIQQMQDQVTESNRCVVGGVQNSLQSTMDLLGYAMGIIISNPQN 433

Query: 453 F 453
           F
Sbjct: 434 F 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823729|ref|XP_002879747.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325586|gb|EFH56006.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/480 (64%), Positives = 378/480 (78%)

Query: 9   QEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIAL 68
           Q  P +      YLYV +FLARW AR WEFSV LYMI +WP+SLL AAIYGA+ES S A+
Sbjct: 29  QNPPPLRRRFVIYLYVGYFLARWSARTWEFSVALYMIHLWPNSLLLAAIYGAIESGSTAI 88

Query: 69  FGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILT 128
           FGPIVG WV+ + YVKVL++WL+ QNLS+ +AG +VI LL  S LKS N   F +LV+LT
Sbjct: 89  FGPIVGQWVEGMDYVKVLRLWLLFQNLSYTIAGGAVIKLLLVSDLKSRNLAVFAILVVLT 148

Query: 129 NISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFI 188
           N++GA+GV+STLAGTILIER+W VV+SEGHPP  LT+MNS+IR IDL+ KLL+P ITG I
Sbjct: 149 NVAGAIGVLSTLAGTILIERDWAVVMSEGHPPAVLTRMNSVIRGIDLSSKLLSPVITGLI 208

Query: 189 ISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM 248
           ISFVSL+ASA+T A W T+T WVEYWLF+SVY G+PA+A S++RRI RS    +E + + 
Sbjct: 209 ISFVSLKASAITFAAWATITAWVEYWLFISVYSGVPAIARSNERRILRSRTKQVEGTDAP 268

Query: 249 PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT 308
                +  + + +      +    KI++ +S +  V AW++Y  QEVVLPGVSL LLFFT
Sbjct: 269 VSVSNAPGTEESSTGNPPCRTGIRKILNRVSKSSFVSAWRIYFNQEVVLPGVSLPLLFFT 328

Query: 309 VLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQ 368
           VLSFGTLMTATL+WEGIP YIIGI RGISAT+G+AAT++YP++QSR+STLRTGLWS WSQ
Sbjct: 329 VLSFGTLMTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLSTLRTGLWSFWSQ 388

Query: 369 WFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGV 428
           W CLL+CV SIW+    +A+YMLM GVA SRLGLWMFDLSVIQQMQDLV ESDRCVVGGV
Sbjct: 389 WSCLLVCVGSIWVKKDKIASYMLMAGVAASRLGLWMFDLSVIQQMQDLVSESDRCVVGGV 448

Query: 429 QNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDKL 488
           QNSLQS +DLMAY +GII+SNP+DFW L LIS   V+LA +LYT HLYRIR H+FHF+K+
Sbjct: 449 QNSLQSALDLMAYLLGIIVSNPKDFWILTLISFSTVSLAGMLYTIHLYRIRNHIFHFEKI 508

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
TAIR|locus:2142649	512	IREG2 "iron regulated 2" [Arab	0.971	0.935	0.625	2.2e-162
TAIR|locus:2057222	524	IREG1 "AT2G38460" [Arabidopsis	0.981	0.923	0.614	1.4e-160
UNIPROTKB|F1RXV2	575	Ssc.90898 "Uncharacterized pro	0.750	0.643	0.295	3.7e-62
MGI|MGI:1315204	570	Slc40a1 "solute carrier family	0.744	0.643	0.303	6.1e-62
RGD|620180	570	Slc40a1 "solute carrier family	0.742	0.642	0.299	9.9e-62
UNIPROTKB|A0JNB7	574	SLC40A1 "Uncharacterized prote	0.750	0.644	0.293	3.3e-61
UNIPROTKB|Q9NP59	571	SLC40A1 "Solute carrier family	0.750	0.647	0.295	2.9e-60
UNIPROTKB|F1NWJ7	581	ORMDL1 "Uncharacterized protei	0.748	0.635	0.292	2.9e-60
ZFIN|ZDB-GENE-000511-8	562	slc40a1 "solute carrier family	0.722	0.633	0.289	6.1e-58
UNIPROTKB|E2RFJ3	536	SLC40A1 "Uncharacterized prote	0.705	0.649	0.290	1.3e-57

TAIR|locus:2142649 IREG2 "iron regulated 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
 Identities = 301/481 (62%), Positives = 365/481 (75%)

Query:     9 QEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIAL 68
             +E+P++   +   LY+ +FLARWGAR WEFSV LYMI +WP+SL   A+YG VES S  L
Sbjct:    24 EEEPSLPRSMVISLYLGYFLARWGARTWEFSVALYMIYLWPNSLFLTAMYGVVESGSATL 83

Query:    69 FGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILT 128
             FGPIVG  +D ++YVKVL++WLVTQNLSFIVAG +V+ LL    LKS NF  F  LV+LT
Sbjct:    84 FGPIVGQMIDGMSYVKVLRLWLVTQNLSFIVAGGAVVALLVVPDLKSQNFPVFATLVVLT 143

Query:   129 NISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFI 188
             N+SGA+GV+STLAGT+LIER+WVVV+SEGH P  LT+MNS+IR IDL+ KLL+P ITG I
Sbjct:   144 NLSGAIGVLSTLAGTVLIERDWVVVMSEGHSPAVLTRMNSVIRGIDLSSKLLSPVITGLI 203

Query:   189 ISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM 248
             ISFVSL+ASA+T A W T+TVW+EYWLF+SVY G+PA+ +S +RR  RS     E++ S 
Sbjct:   204 ISFVSLRASAITFAAWATITVWIEYWLFISVYNGVPAIVQSDERRSLRSSQSQAEETDSA 263

Query:   249 PRERESLLSHDENNAELAEKRWR-WKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF 307
                   LL H+E +    + R R  +I++ IS +  V AW+ YL QE+VLPGVSLALLFF
Sbjct:   264 SSFYVPLL-HEEESYRNTQSRSRILRILERISESSFVSAWRNYLNQEIVLPGVSLALLFF 322

Query:   308 TVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTGLWSIWS 367
             TVLSFGTLMTATLEW+GIP Y                  LYP++QSRIS LRTG+WS WS
Sbjct:   323 TVLSFGTLMTATLEWKGIPTYIIGIGRGISAGVGLAATVLYPLMQSRISPLRTGVWSFWS 382

Query:   368 QWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGG 427
             QW CLL+CV SIW+    +A+YMLM GVA SRLGLWMFDL+VIQQMQDLVPESDRCVVGG
Sbjct:   383 QWTCLLVCVGSIWVEKEKIASYMLMAGVAASRLGLWMFDLAVIQQMQDLVPESDRCVVGG 442

Query:   428 VQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDK 487
             VQNSLQS +DLMA  +GII+SNP+DFW L LIS   V+LA ILYT HLYRIRKHLFH +K
Sbjct:   443 VQNSLQSALDLMANLLGIIVSNPKDFWMLTLISFATVSLAGILYTIHLYRIRKHLFHLEK 502

Query:   488 L 488
             +
Sbjct:   503 I 503

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015099 "nickel cation transmembrane transporter activity" evidence=IGI

GO:0006824 "cobalt ion transport" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA;IMP

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=IMP

GO:0015675 "nickel cation transport" evidence=IMP

GO:0055068 "cobalt ion homeostasis" evidence=IMP

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2057222 IREG1 "AT2G38460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1564 (555.6 bits), Expect = 1.4e-160, P = 1.4e-160
 Identities = 300/488 (61%), Positives = 362/488 (74%)

Query:     2 ESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAV 61
             ES+P      PA+      YLYV +FLARW AR WEFSV LYMI +WP+SLL AAIYGA+
Sbjct:    23 ESQPQ--NPPPALRRRFVIYLYVGYFLARWSARTWEFSVALYMIHLWPNSLLLAAIYGAI 80

Query:    62 ESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAF 121
             ES S A+FGPIVG WV+ + YVKVL++WL+ QNLS+ +AG +VI LL  S LKS N   F
Sbjct:    81 ESGSTAIFGPIVGQWVEGMDYVKVLRLWLLFQNLSYTIAGGAVIKLLLVSDLKSRNLPVF 140

Query:   122 VLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA 181
              +L++LTN++GA+GV+STLAGTILIER+W VV+SEGHPP  LTKMNS+IR IDL+ KLL+
Sbjct:   141 AILIVLTNLAGAIGVLSTLAGTILIERDWAVVMSEGHPPAVLTKMNSVIRGIDLSSKLLS 200

Query:   182 PAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPID 241
             P ITG IISFVSL+ASA+T A W T+T WVEYWLF+SVY G+PA+  S++RRI RS    
Sbjct:   201 PVITGLIISFVSLKASAITFAAWATITAWVEYWLFISVYSGVPAITRSNERRILRSRTKQ 260

Query:   242 MEQSTSMPRERESLLSHDENNAELAEKRWRWKII-DWISNAPCVGAWQVYLKQEVVLPGV 300
             +E     P     +   +E        R    +I D +S +  VGAW++Y  QEVVLPGV
Sbjct:   261 VE-GRDAPVSVSIVPGTEEGYTGNPPSRTGILVILDRMSKSSFVGAWRIYFNQEVVLPGV 319

Query:   301 SLALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRT 360
             SLALLFFTVLSFGTLMTATL+WEGIP Y                  +YP++QSR+STLRT
Sbjct:   320 SLALLFFTVLSFGTLMTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLSTLRT 379

Query:   361 GLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPES 420
             GLWS WSQW CLL+CV SIW+    +A+YMLM GVA SRLGLWMFDL+VIQQMQDLV ES
Sbjct:   380 GLWSFWSQWSCLLVCVGSIWVKKDKIASYMLMAGVAASRLGLWMFDLAVIQQMQDLVSES 439

Query:   421 DRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRK 480
             DRCVVGGVQNSLQS +DLMAY +GII+SNP+DFW L LIS   V+LA +LYT HLYRIR 
Sbjct:   440 DRCVVGGVQNSLQSALDLMAYLLGIIVSNPKDFWILTLISFSTVSLAGMLYTIHLYRIRN 499

Query:   481 HLFHFDKL 488
             H+FH +K+
Sbjct:   500 HIFHLEKI 507

GO:0005215 "transporter activity" evidence=ISS

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006824 "cobalt ion transport" evidence=IMP

UNIPROTKB|F1RXV2 Ssc.90898 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 461 (167.3 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
 Identities = 113/383 (29%), Positives = 192/383 (50%)

Query:    13 AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
             ++ ++LT+    LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ + 
Sbjct:    16 SLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVL 75

Query:    70 GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL---VI 126
             G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ +        T +  +VL    ++
Sbjct:    76 GAIIGDWVDKNARLKVAQTSLVIQNVSVILCGIILMMVFLHKDELLTMYHGWVLTSCYIL 135

Query:   127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG 186
             +  I+    + ST A TI I+R+W+VV++ G     L  MN+ IRRID    +LAP   G
Sbjct:   136 IITIANIANLAST-ATTITIQRDWIVVVA-GEDRSKLADMNATIRRIDQLTNILAPMAVG 193

Query:   187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRS--MPIDMEQ 244
              I++F S       ++ W  V++ VEY+L   VY+  PALA  +  ++  +    +++ +
Sbjct:   194 QIMTFGSAVIGCGFISGWNLVSMCVEYFLLWKVYQKTPALAVKAVPKVEETELKQLNLYK 253

Query:   245 STS-MPRERESLLSHDENNAELAEKRWRWKIIDWISNA--PCVGAWQVYLKQEVVLPGVS 301
              T   P E   L+   + +    E          ++         W  Y  Q V L G+ 
Sbjct:   254 ETEPKPLEGTHLMGEKDPDIHELENEQEPSCASQMAEPFRTFRDGWVSYYNQPVFLAGMG 313

Query:   302 LALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTG 361
             LA L+ TVL F  + T     +G+                      +  L+ +   +RTG
Sbjct:   314 LAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAVTGIMGTVAFTWLRRKCGLVRTG 373

Query:   362 LWSIWSQWFCLLICVASIWIHNS 384
             L S ++Q+ CL++CV S+++  S
Sbjct:   374 LISGFAQFSCLILCVISVFMPGS 396

GO:0016021 "integral to membrane" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

MGI|MGI:1315204 Slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Mus musculus (taxid:10090)]

 Score = 460 (167.0 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 117/386 (30%), Positives = 193/386 (50%)

Query:    13 AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
             ++ ++LT+    LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ + 
Sbjct:    16 SLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVL 75

Query:    70 GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLV---I 126
             G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ +    +   T +  +VL V   +
Sbjct:    76 GAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKNELLTMYHGWVLTVCYIL 135

Query:   127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG 186
             +  I+    + ST A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP   G
Sbjct:   136 IITIANIANLAST-ATAITIQRDWIVVVA-GENRSRLADMNATIRRIDQLTNILAPMAVG 193

Query:   187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQST 246
              I++F S       ++ W  V++ VEY+L   VY+  PALA  +  ++  S   +++Q T
Sbjct:   194 QIMTFGSPVIGCGFISGWNLVSMCVEYFLLWKVYQKTPALAVKAALKVEES---ELKQLT 250

Query:   247 S------MPRERESLLSHDENNAELAEKRWRWKIIDWISNA--PCVGAWQVYLKQEVVLP 298
             S       P E   L+   ++N    E          ++         W  Y  Q V L 
Sbjct:   251 SPKDTEPKPLEGTHLMGEKDSNIRELECEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA 310

Query:   299 GVSLALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTL 358
             G+ LA L+ TVL F  + T     +G+                      +  L+ +   +
Sbjct:   311 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV 370

Query:   359 RTGLWSIWSQWFCLLICVASIWIHNS 384
             RTGL+S  +Q  CL++CV S+++  S
Sbjct:   371 RTGLFSGLAQLSCLILCVISVFMPGS 396

GO:0002260 "lymphocyte homeostasis" evidence=IMP

GO:0003158 "endothelium development" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005771 "multivesicular body" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006826 "iron ion transport" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=ISO

GO:0006915 "apoptotic process" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=ISO;IDA

GO:0048536 "spleen development" evidence=IMP

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IMP

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IMP

RGD|620180 Slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 459 (166.6 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 116/387 (29%), Positives = 193/387 (49%)

Query:    13 AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
             ++ ++LT+    LY+ H L+ WG RMW F+V ++++ ++ + LL  A+YG V + S+ + 
Sbjct:    16 SLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNGLLLTAVYGLVVAGSVLVL 75

Query:    70 GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTN----FIAFVLLV 125
             G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ ++F    +  N    ++  V  +
Sbjct:    76 GAIIGDWVDKNARLKVAQTSLVVQNVSVILCGI-ILMMVFLHKNELLNMYHGWVLTVCYI 134

Query:   126 ILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAIT 185
             ++  I+    + ST A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP   
Sbjct:   135 LIITIANIANLAST-ATAITIQRDWIVVVA-GENRSRLADMNATIRRIDQLTNILAPMAV 192

Query:   186 GFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQS 245
             G I++F S       ++ W  V++ VEY+L   VY+  PALA  +  ++  S   +++Q 
Sbjct:   193 GQIMTFGSPVIGCGFISGWNLVSMCVEYFLLWKVYQKTPALAVKAALKVEES---ELKQL 249

Query:   246 TS------MPRERESLLSHDENNAELAEKRWRWKIIDWISNA--PCVGAWQVYLKQEVVL 297
             TS       P E   L+   ++N    E          I+         W  Y  Q V L
Sbjct:   250 TSPKDTEPKPLEGTHLMGEKDSNIRELECEQEPTCASQIAEPFRTFRDGWVSYYNQPVFL 309

Query:   298 PGVSLALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRIST 357
              G+ LA L+ TVL F  + T     +G+                      +  L+ +   
Sbjct:   310 AGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSVLMGASAITGIMGTVAFTWLRRKCGL 369

Query:   358 LRTGLWSIWSQWFCLLICVASIWIHNS 384
             +RTGL+S  +Q  CL++CV S+++  S
Sbjct:   370 VRTGLFSGLAQLSCLILCVISVFMPGS 396

GO:0002260 "lymphocyte homeostasis" evidence=ISO

GO:0003158 "endothelium development" evidence=ISO

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;ISO;NAS

GO:0005771 "multivesicular body" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006826 "iron ion transport" evidence=ISO;NAS

GO:0006879 "cellular iron ion homeostasis" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0034755 "iron ion transmembrane transport" evidence=ISO

GO:0048536 "spleen development" evidence=ISO

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=ISO

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=ISO

UNIPROTKB|A0JNB7 SLC40A1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 450 (163.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 112/382 (29%), Positives = 190/382 (49%)

Query:    13 AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
             ++ ++LT+    LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ + 
Sbjct:    16 SLANYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVL 75

Query:    70 GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL---VI 126
             G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ +    +   T +  +VL    ++
Sbjct:    76 GAIIGDWVDKNARLKVAQTSLVIQNVSVILCGIILMMVFLHKNELLTMYHGWVLTSCYIL 135

Query:   127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG 186
             +  I+    + ST A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP   G
Sbjct:   136 IITIANIANLAST-ATAITIQRDWIVVVAGGDRGR-LADMNATIRRIDQLTNILAPMAVG 193

Query:   187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMP-IDM-EQ 244
              I++F S       ++ W  V++ +EY+L   VY+  PALA  +  +    +  +++ ++
Sbjct:   194 QIMTFGSTVIGCGFISAWNLVSMCMEYFLLWKVYQKTPALAVKAPPKEETELKRLNLYKE 253

Query:   245 STSMPRERESLLSHDENNAELAEKRWRWKIIDWISNA--PCVGAWQVYLKQEVVLPGVSL 302
             S   P E   L+   + +    E          ++         W  Y  Q V L G+ L
Sbjct:   254 SEPKPLEGTHLMGEKDPDIHELEHEQEPSCASQMAEPFRTFRDGWVSYYNQSVFLAGMGL 313

Query:   303 ALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTGL 362
             A L+ TVL F  + T     +G+                      +  L+ R   +RTGL
Sbjct:   314 AFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRRCGLVRTGL 373

Query:   363 WSIWSQWFCLLICVASIWIHNS 384
              S  +Q  CL++CV S+++  S
Sbjct:   374 ISGLAQLSCLILCVISVFMPGS 395

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NP59 SLC40A1 "Solute carrier family 40 member 1" [Homo sapiens (taxid:9606)]

 Score = 443 (161.0 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 113/383 (29%), Positives = 187/383 (48%)

Query:    13 AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
             ++  +LT+    LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ + 
Sbjct:    16 SLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVL 75

Query:    70 GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL---VI 126
             G I+G WVDK   +KV Q  LV QN+S I+ G+ ++ +        T +  +VL    ++
Sbjct:    76 GAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLTSCYIL 135

Query:   127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG 186
             +  I+    + ST A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP   G
Sbjct:   136 IITIANIANLAST-ATAITIQRDWIVVVA-GEDRSKLANMNATIRRIDQLTNILAPMAVG 193

Query:   187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRS--MPIDMEQ 244
              I++F S       ++ W  V++ VEY L   VY+  PALA  +  +   +    +++ +
Sbjct:   194 QIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLNLHK 253

Query:   245 STS-MPRERESLLSHDENNAELAEKRWRWKIIDWISNA--PCVGAWQVYLKQEVVLPGVS 301
              T   P E   L+   ++N    E          ++         W  Y  Q V L G+ 
Sbjct:   254 DTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLAGMG 313

Query:   302 LALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTG 361
             LA L+ TVL F  + T     +G+                      +  L+ +   +RTG
Sbjct:   314 LAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLVRTG 373

Query:   362 LWSIWSQWFCLLICVASIWIHNS 384
             L S  +Q  CL++CV S+++  S
Sbjct:   374 LISGLAQLSCLILCVISVFMPGS 396

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP;TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0005381 "iron ion transmembrane transporter activity" evidence=IMP

GO:0034755 "iron ion transmembrane transport" evidence=IMP

UNIPROTKB|F1NWJ7 ORMDL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 438 (159.2 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 112/383 (29%), Positives = 188/383 (49%)

Query:    13 AITSFLTT---YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALF 69
             A+  + T+    LY+ H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ L 
Sbjct:    17 ALVGYFTSAKFVLYLGHALSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLLL 76

Query:    70 GPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL---VI 126
             G I+G WVDK + +KV Q  LV QN S I+ G+ ++ +  F +   T +  ++L    ++
Sbjct:    77 GAIIGDWVDKNSRLKVAQTSLVVQNASVILCGIILMIIFLFKTQLLTLYHGWLLTMCYIL 136

Query:   127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG 186
             +  I+    + ST A  I I+R+W+VV++ G     L  MN+ IRRID    +LAP   G
Sbjct:   137 VITIANIANLAST-ATAITIQRDWIVVVA-GEDRSKLADMNATIRRIDQLTNILAPMAVG 194

Query:   187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALA-ESSQRRIRRSMPIDMEQS 245
              I++F S       ++ W  +++ VEY L   VY+  P LA + S+        +++++ 
Sbjct:   195 QIMTFGSPMIGCGFISGWNLMSMCVEYLLLWKVYQKTPTLALKCSKVEESELKQLNIKKE 254

Query:   246 TSM-PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCV---GAWQVYLKQEVVLPGVS 301
               M P E   L+   +      ++         I+  P +     W  Y  Q V L G+ 
Sbjct:   255 NDMKPAEGVQLIVEKDVTGFEPQQEKEVGCAARIAE-PFITFRDGWVAYYNQPVFLAGMG 313

Query:   302 LALLFFTVLSFGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTG 361
             LA L+ TVL F  + T     +G+                      +  L+ +   +RTG
Sbjct:   314 LAFLYMTVLGFDCITTGYAYTQGLSGSVLSLLMGASAITGIMGTVAFTWLRRKCGLIRTG 373

Query:   362 LWSIWSQWFCLLICVASIWIHNS 384
             L S  +Q  CL++C  S+++  S
Sbjct:   374 LISGVAQLSCLVLCAISVFMPGS 396

GO:0016021 "integral to membrane" evidence=IEA

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

ZFIN|ZDB-GENE-000511-8 slc40a1 "solute carrier family 40 (iron-regulated transporter), member 1" [Danio rerio (taxid:7955)]

 Score = 423 (154.0 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
 Identities = 108/373 (28%), Positives = 187/373 (50%)

Query:    22 LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
             +YV H L+ WG RMW F+V ++++ ++ +SLL  A+YG V + S+ L G I+G WVDK  
Sbjct:    25 IYVGHALSTWGDRMWNFAVAVFLVELYGNSLLLTAVYGLVVAGSVLLLGAIIGDWVDKNP 84

Query:    82 YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL---VILTNISGAVGVIS 138
              +KV Q  LV QN + I+ G  ++ +  F    S+ +  ++L    +++ +I+    + S
Sbjct:    85 RLKVAQTSLVVQNSAVILCGALLMAVFQFKQQLSSMYDGWLLTTCYIMVISIANIANLAS 144

Query:   139 TLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASA 198
             T A +I I+R+WVVV++ G     L  MN+ +R ID    +LAP + G I++F S     
Sbjct:   145 T-AMSITIQRDWVVVVA-GDDRSKLADMNATVRIIDQLTNILAPMLVGQIMAFGSHFIGC 202

Query:   199 MTLAIWTTVTVWVEYWLFMSVYKGIPALA------ESSQRRIRRSMPIDME-QSTSMPRE 251
               ++ W   ++ +EY+L   VY+  PALA      +S  + ++  + I  E  +T  P E
Sbjct:   203 GFISGWNLFSMCLEYFLLWKVYQKTPALAFKAGQKDSDDQELKH-LNIQKEIGNTESPVE 261

Query:   252 RESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLS 311
                L++  E++    +    +++ + I        W  Y  Q +   G+SLA L+ TVL 
Sbjct:   262 ASQLMT--ESSEPKKDTGCCYQMAEPIRTFK--DGWVAYYNQSIFFAGMSLAFLYMTVLG 317

Query:   312 FGTLMTATLEWEGIPAYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTGLWSIWSQWFC 371
             F  + T     +G+                      +  ++ +   +RTG  +  +Q  C
Sbjct:   318 FDCITTGYAYTQGLNGSVLSLLMGASAVSGICGTVAFTWIRKKCGLIRTGFIAGVTQLSC 377

Query:   372 LLICVASIWIHNS 384
             L +CVAS++   S
Sbjct:   378 LTLCVASVFAPGS 390

GO:0034755 "iron ion transmembrane transport" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA;IMP;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0006826 "iron ion transport" evidence=IMP

GO:0042541 "hemoglobin biosynthetic process" evidence=IMP

GO:0043362 "nucleate erythrocyte maturation" evidence=IMP

GO:0006811 "ion transport" evidence=IEA

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0010039 "response to iron ion" evidence=IDA

GO:0046688 "response to copper ion" evidence=IDA

UNIPROTKB|E2RFJ3 SLC40A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 104/358 (29%), Positives = 176/358 (49%)

Query:    35 MWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQN 94
             MW F+V ++++ ++ +SLL  A+YG V + S+ + G I+G WVDK   +KV Q  LV QN
Sbjct:     1 MWHFAVSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQN 60

Query:    95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLL---VILTNISGAVGVISTLAGTILIEREWV 151
             +S I+ G+ ++ +    +   T +  +VL    +++  I+    + ST A  I I+R+W+
Sbjct:    61 VSVILCGIILMMVFLHKNELLTMYHGWVLTFCYILIITIADVANLAST-ATAITIQRDWI 119

Query:   152 VVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWV 211
             VV++ G   + L  MN+ IRRID    +LAP   G I++F S       ++ W  V++ V
Sbjct:   120 VVVAGGDRSK-LADMNATIRRIDQLTNILAPMAVGQIMTFGSAVIGCGFISGWNLVSMCV 178

Query:   212 EYWLFMSVYKGIPALAESSQRRIRRS--MPIDMEQSTS-MPRERESLLSHDENNAELAEK 268
             EY+L   VY+  PALA  +  ++  +    +++ + T   P E   L+   + N    E 
Sbjct:   179 EYFLLWKVYQKTPALAVKAALKVEEAELKQLNLHKETEPKPLEGTHLMGEKDPNVHELEH 238

Query:   269 RWRWKIIDWISNA--PCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIP 326
                      ++         W  Y  Q V L G+ LA L+ TVL F  + T     +G+ 
Sbjct:   239 EQEPSCASQMAEPFRTFRDGWVSYYNQSVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLS 298

Query:   327 AYXXXXXXXXXXXXXXXXXXLYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS 384
                                  +  L+ +   +RTGL S ++Q  CL++CV S+++  S
Sbjct:   299 GSILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLISGFAQLSCLILCVISVFMPGS 356

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0060345 "spleen trabecula formation" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005771 "multivesicular body" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IEA

GO:0003158 "endothelium development" evidence=IEA

GO:0002260 "lymphocyte homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5Z922	S40A1_ORYSJ	No assigned EC number	0.5857	0.9432	0.9607	yes	no
F4KGN5	S40A2_ARATH	No assigned EC number	0.6548	0.9655	0.9296	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	493
pfam06963	432	pfam06963, FPN1, Ferroportin1 (FPN1)	1e-172
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.003

>gnl|CDD|219242 pfam06963, FPN1, Ferroportin1 (FPN1)

 Score =  491 bits (1266), Expect = e-172
 Identities = 204/447 (45%), Positives = 274/447 (61%), Gaps = 23/447 (5%)

Query: 21  YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL 80
            LYV+HFL+ WG RMWEF+V L+M  ++P SLL AA+YG VES S  + GPIVG  VD+L
Sbjct: 6   RLYVSHFLSTWGDRMWEFAVPLFMAELYPGSLLLAAVYGLVESLSALVLGPIVGQLVDRL 65

Query: 81  TYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTL 140
             +K +++ L+ QNLS  V+G   I L    SL S      + L  +T +  AV  +++ 
Sbjct: 66  PRLKAIRLSLLLQNLSVAVSGALFIALFVVLSLLSQASPLLIPLFAVTVLLAAVAKLAST 125

Query: 141 AGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMT 200
           A T+ IER+WVVVIS G  P  L KMN+ +RRIDL CKLLAP + G ++SFVSL+A+A  
Sbjct: 126 ANTVAIERDWVVVIS-GGLPVVLAKMNATLRRIDLFCKLLAPLLVGLLLSFVSLRAAAGF 184

Query: 201 LAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDE 260
           L +W  V+V VEY+L  SVYK +PAL+  ++ R  R              E       + 
Sbjct: 185 LLVWNLVSVVVEYFLLASVYKSVPALSRKAEVRTSRD-------------EEAGSELQEP 231

Query: 261 NNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATL 320
            N     KR +  +            W+ Y++Q V L   +L+LL+FTVLSFGTLMT  L
Sbjct: 232 ANRPSIVKRVKEYVK------TQRDGWREYVRQPVFLASFALSLLYFTVLSFGTLMTTYL 285

Query: 321 EWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW 380
             +G+   +IG  RG SA  G+A T  YP L+ RI  LRTGLWS+W Q  CL + VAS++
Sbjct: 286 LHQGLSPSVIGGMRGGSAVTGLAGTFAYPFLEKRIGLLRTGLWSLWWQLSCLALAVASVF 345

Query: 381 IHN---SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD 437
           +     S ++A++L  GVA SR+GLW FDL+V Q MQ+ VPES+R VVGGVQNSLQS  D
Sbjct: 346 LPGSPMSALSAFLLFGGVALSRIGLWSFDLAVTQLMQEGVPESERNVVGGVQNSLQSLFD 405

Query: 438 LMAYTMGIIISNPQDFWKLILISVIVV 464
           L+ + + II  +P+ F  L+LIS   V
Sbjct: 406 LLKFALTIIAPDPEHFGYLVLISYGAV 432

This family represents a conserved region approximately 100 residues long within eukaryotic Ferroportin1 (FPN1), a protein that may play a role in iron export from the cell. This family may represent a number of transmembrane regions in Ferroportin1. Length = 432

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 71/413 (17%), Positives = 143/413 (34%), Gaps = 74/413 (17%)

Query: 22  LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT 81
           L++A FLA  G  +   ++ LY+      S     +     S   AL  P+ G   D+  
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 82  YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLA 141
             +VL        +  ++  + ++ LLF S     +    ++L +L  + G     +  A
Sbjct: 61  RRRVL-------LIGLLLFALGLLLLLFAS-----SLWLLLVLRVLQGLGGGALFPAAAA 108

Query: 142 GTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTL 201
                      +I++  PPE   +   ++         L P + G + S    +A+ + L
Sbjct: 109 -----------LIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 202 AIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN 261
           AI   +   +   L             + +                              
Sbjct: 158 AILALLAAVLAALLLPRPPPESKRPKPAEEAP---------------------------- 189

Query: 262 NAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLE 321
                              AP V AW++ L+  V+   ++L L  F   +  T +    E
Sbjct: 190 -------------------APLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQE 230

Query: 322 WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI 381
             G+ A + G+  G++  +G    +L   L  R+   R  L ++      L++    + +
Sbjct: 231 VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLAL----LLLILAALGLAL 286

Query: 382 HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQS 434
            +   ++  L+V +     G  +   ++   + DL P+ +R    G+ N+  S
Sbjct: 287 LSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGS 339

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	100.0
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
PRK10489	417	enterobactin exporter EntS; Provisional	99.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.88
TIGR00900	365	2A0121 H+ Antiporter protein.	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.76
PRK09874	408	drug efflux system protein MdtG; Provisional	99.75
PRK05122	399	major facilitator superfamily transporter; Provisi	99.73
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.72
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.72
PRK12382	392	putative transporter; Provisional	99.68
PRK12307	426	putative sialic acid transporter; Provisional	99.66
TIGR00893	399	2A0114 d-galactonate transporter.	99.65
PRK15011	393	sugar efflux transporter B; Provisional	99.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.64
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.64
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.63
TIGR00901	356	2A0125 AmpG-related permease.	99.63
TIGR00891	405	2A0112 putative sialic acid transporter.	99.62
PRK03545	390	putative arabinose transporter; Provisional	99.62
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.62
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
PRK11902	402	ampG muropeptide transporter; Reviewed	99.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.58
PRK11043	401	putative transporter; Provisional	99.58
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.57
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.57
PRK10091	382	MFS transport protein AraJ; Provisional	99.56
PRK10054	395	putative transporter; Provisional	99.56
PRK10504	471	putative transporter; Provisional	99.55
PRK03893	496	putative sialic acid transporter; Provisional	99.55
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.54
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.53
PRK11663	434	regulatory protein UhpC; Provisional	99.52
TIGR00895	398	2A0115 benzoate transport.	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.49
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.49
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.47
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.47
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.45
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.45
PRK09528	420	lacY galactoside permease; Reviewed	99.45
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.44
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.38
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.34
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.34
PRK03699	394	putative transporter; Provisional	99.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.33
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.32
PRK03633	381	putative MFS family transporter protein; Provision	99.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.26
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.22
PRK10429	473	melibiose:sodium symporter; Provisional	99.22
PRK09848	448	glucuronide transporter; Provisional	99.21
PRK10642	490	proline/glycine betaine transporter; Provisional	99.21
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.19
PF13347	428	MFS_2: MFS/sugar transport protein	99.18
PRK10133	438	L-fucose transporter; Provisional	99.18
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.18
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.17
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.13
PRK09952	438	shikimate transporter; Provisional	99.12
PRK09669	444	putative symporter YagG; Provisional	99.11
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.08
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.05
TIGR00898	505	2A0119 cation transport protein.	99.03
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.02
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.02
PLN00028	476	nitrate transmembrane transporter; Provisional	98.99
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.95
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.91
PRK11462	460	putative transporter; Provisional	98.87
KOG2615	451	consensus Permease of the major facilitator superf	98.8
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.75
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.72
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.66
COG2211	467	MelB Na+/melibiose symporter and related transport	98.66
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.65
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.6
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.59
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.41
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.31
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.14
TIGR00805	633	oat sodium-independent organic anion transporter.	98.1
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.1
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.07
TIGR00900	365	2A0121 H+ Antiporter protein.	98.07
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.02
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.99
PRK10489	417	enterobactin exporter EntS; Provisional	97.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.96
TIGR00893	399	2A0114 d-galactonate transporter.	97.94
PRK11663	434	regulatory protein UhpC; Provisional	97.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.88
TIGR00895	398	2A0115 benzoate transport.	97.87
KOG0569	485	consensus Permease of the major facilitator superf	97.85
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.79
PRK10054	395	putative transporter; Provisional	97.77
PRK05122	399	major facilitator superfamily transporter; Provisi	97.77
PRK03633	381	putative MFS family transporter protein; Provision	97.77
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.76
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.75
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.73
PRK12382	392	putative transporter; Provisional	97.72
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.71
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.7
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.69
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.68
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.66
TIGR00891	405	2A0112 putative sialic acid transporter.	97.65
PRK10091	382	MFS transport protein AraJ; Provisional	97.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.61
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.61
KOG2532	466	consensus Permease of the major facilitator superf	97.58
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.56
PRK10504	471	putative transporter; Provisional	97.55
PRK03699	394	putative transporter; Provisional	97.54
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.52
PRK03893	496	putative sialic acid transporter; Provisional	97.48
PRK11902	402	ampG muropeptide transporter; Reviewed	97.46
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.45
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.45
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.44
PRK12307	426	putative sialic acid transporter; Provisional	97.43
PRK03545	390	putative arabinose transporter; Provisional	97.43
KOG2533	495	consensus Permease of the major facilitator superf	97.42
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.41
PRK09528	420	lacY galactoside permease; Reviewed	97.41
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.4
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.38
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.38
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.35
PRK09705	393	cynX putative cyanate transporter; Provisional	97.34
PLN00028	476	nitrate transmembrane transporter; Provisional	97.31
TIGR00901	356	2A0125 AmpG-related permease.	97.3
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.29
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.29
PRK11043	401	putative transporter; Provisional	97.26
PRK09874	408	drug efflux system protein MdtG; Provisional	97.25
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.23
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.23
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.18
PRK10133	438	L-fucose transporter; Provisional	97.18
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.12
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.09
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.07
PRK11010	491	ampG muropeptide transporter; Validated	97.04
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.03
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.02
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.0
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.93
PRK15011	393	sugar efflux transporter B; Provisional	96.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.91
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.88
PTZ00207	591	hypothetical protein; Provisional	96.85
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.81
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.8
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.66
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.55
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.53
KOG0254	513	consensus Predicted transporter (major facilitator	96.49
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.42
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.36
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.35
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.32
PRK09952	438	shikimate transporter; Provisional	96.31
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.31
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.3
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.28
TIGR00898	505	2A0119 cation transport protein.	96.25
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.24
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.08
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.05
PRK15075	434	citrate-proton symporter; Provisional	96.03
PF13347	428	MFS_2: MFS/sugar transport protein	95.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.79
PRK10642	490	proline/glycine betaine transporter; Provisional	95.75
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.62
KOG0254	513	consensus Predicted transporter (major facilitator	95.47
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.47
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.38
KOG2532	466	consensus Permease of the major facilitator superf	95.01
KOG0569	485	consensus Permease of the major facilitator superf	94.99
PRK09848	448	glucuronide transporter; Provisional	94.89
TIGR00805	633	oat sodium-independent organic anion transporter.	94.65
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.61
PF12832	77	MFS_1_like: MFS_1 like family	94.52
PRK10429	473	melibiose:sodium symporter; Provisional	94.38
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	92.99
PRK09669	444	putative symporter YagG; Provisional	92.6
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	92.51
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	91.89
KOG2563	480	consensus Permease of the major facilitator superf	91.06
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	90.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	90.72
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	90.68
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	89.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	89.87
KOG2325	488	consensus Predicted transporter/transmembrane prot	88.9
COG0477	338	ProP Permeases of the major facilitator superfamil	88.36
TIGR00788	468	fbt folate/biopterin transporter. The only functio	87.81
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	87.74
COG4262	508	Predicted spermidine synthase with an N-terminal m	86.12
COG2270	438	Permeases of the major facilitator superfamily [Ge	85.8
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	85.64
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	84.71
PTZ00207	591	hypothetical protein; Provisional	84.53
PRK11462	460	putative transporter; Provisional	84.46
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	84.06
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	83.49
KOG1330	493	consensus Sugar transporter/spinster transmembrane	83.01
KOG3762	618	consensus Predicted transporter [General function	82.25
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	81.71

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=100.00  E-value=2.7e-108  Score=863.91  Aligned_cols=428  Identities=45%  Similarity=0.786  Sum_probs=378.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |..++||+||++|+||||||||++|+++++++|+|++|+|+||++++++.++|||.+|+|+||+||+|+++.+++.||++
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      |++||+++++++........+...+..++++.+++||++++++++++++|||||||+|+++|+ ++|+++||+||||||+
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~-~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDP-GALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCCh-hhHHHHHHHHHHHHHH
Confidence            999999876655432222111223345555666789999999999999999999999997776 8999999999999999


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      ||++||+++|+++++.|+.+++.++++||.+|+++||+++++||+++|+|++|++++++++.+ +.++            
T Consensus       161 ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~-~~~~------------  227 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSS-DEES------------  227 (432)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccc-cccc------------
Confidence            999999999999999999999999999999999999999999999999999764444221100 0000            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGI  336 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~  336 (493)
                      +.++..    ++++.+++.+.+.+  +++||+.|+|||+|+|++++++||||||+||++|++|++++|+|+..+|++||+
T Consensus       228 ~~~~~~----~~~~~~~~~~~~~~--~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~  301 (432)
T PF06963_consen  228 SSESSS----DPSILKRLWNPLRT--IIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGL  301 (432)
T ss_pred             cccccc----hhhHHHHHHHHHHH--HhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHH
Confidence            000000    11122222222222  589999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHhhhchhhhhhhhhhhhh
Q 011118          337 SATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN---SLVAAYMLMVGVATSRLGLWMFDLSVIQQM  413 (493)
Q Consensus       337 ~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~---~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~  413 (493)
                      ||++|++||++||+++||+|++|+|+|++++|+.|+.+|+.++|.++   +.++.++|+.|+++||+|||+||++++|++
T Consensus       302 gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~  381 (432)
T PF06963_consen  302 GAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIM  381 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence            99999999999999999999999999999999999999999999866   578999999999999999999999999999


Q ss_pred             hccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 011118          414 QDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVV  464 (493)
Q Consensus       414 Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V  464 (493)
                      ||.|||++||+++|+|+|+|++|||++|+++|++|+|++|++++++|+++|
T Consensus       382 Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~lv~iS~~~V  432 (432)
T PF06963_consen  382 QENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWLVLISVAAV  432 (432)
T ss_pred             cccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChHHHhhheeC
Confidence            999999999999999999999999999999999999999999999999875

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-88  Score=677.63  Aligned_cols=467  Identities=53%  Similarity=0.851  Sum_probs=402.6

Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHH
Q 011118            8 VQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQ   87 (493)
Q Consensus         8 ~~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~   87 (493)
                      ++.++..+++...+||.+|++++||||||+|++.+|++.++|+|++.+|+||++++.+.+++||.+|.|+|+.+|+|+++
T Consensus        18 ~~~~~~~ls~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~   97 (503)
T KOG2601|consen   18 EGSAEGLLSSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQ   97 (503)
T ss_pred             cccccccccceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHH
Confidence            33444567778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhh
Q 011118           88 IWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMN  167 (493)
Q Consensus        88 ~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~N  167 (493)
                      .+.+.||++++++.++++.++..++.+....++|..|+++++..+++.++++.|.++.+|||||+++.++++|+.+++||
T Consensus        98 ~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mn  177 (503)
T KOG2601|consen   98 TWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMN  177 (503)
T ss_pred             HHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcc
Confidence            99999999999998887666654455666777999999999999999999999999999999999998877778999999


Q ss_pred             hHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccC
Q 011118          168 SIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTS  247 (493)
Q Consensus       168 a~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~  247 (493)
                      |.+|+||+.+|+++|+..|++++++|.+.++.++++||++|+.+||+++..||+.+|.|+.|+.++..+.+.+..+.- +
T Consensus       178 atir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~ey~ll~~vy~g~palavs~~~k~~rs~~~q~~~~-~  256 (503)
T KOG2601|consen  178 ATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWVEYWLLISVYIGVPALAVSKGRKNLRSKESQVELR-D  256 (503)
T ss_pred             hhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHHHHHHHHHHHhCCcHHhhhcchhhhhhhhheeeee-c
Confidence            999999999999999999999999999999999999999999999999999999999999765444333222111110 0


Q ss_pred             Ccc--ccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhhhhhHHHHHHHHcCC
Q 011118          248 MPR--ERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGI  325 (493)
Q Consensus       248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~f~~l~~~yl~~~gl  325 (493)
                      +..  ....+.++.-........+ .-.+..+...++.+++|+.|+.||+++++.+++++|+|+++|+.+|++|+.+.|.
T Consensus       257 ~~~s~~v~~~~s~~~~~~~~~~~~-~~~~l~~~~~~sF~~~w~~y~nq~vvl~g~slallf~tvl~f~~L~t~~~~~~G~  335 (503)
T KOG2601|consen  257 CQSSFPVAGTHSEGFMTNLASRYG-ILVILPRFSISSFRSAWRVYFNQEVVLPGVSLALLFFTVLGFGVLMTATLFWPGS  335 (503)
T ss_pred             CCcccccccccceeeeccccccCc-cccccchhhhHHHHhHHHhhccCeeeehhhHHHHHHHHHHhhheeeeeeeecCCC
Confidence            000  0000000000000000000 0001111222336899999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhh
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMF  405 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~f  405 (493)
                      |-..+|+.|++++..|+.+|+.+|.+.+|.++.|+|.|+.|.|+.            -+..++++|++|++.+|+|||+|
T Consensus       336 p~~i~gi~~g~Sa~tg~~~tv~~~~~~~~~nl~rtg~ws~~sq~s------------v~~isv~ll~agVaaaR~GLW~f  403 (503)
T KOG2601|consen  336 PMYIIGIGRGISAGTGLAATVHYPLMQSRTNLLRTGLWSFWSQDS------------VSKISVYLLFAGVAAARLGLWMF  403 (503)
T ss_pred             CceehhhccCcchhhhhhhhhhcccccCccCCCcceehhhccccc------------chhHHHHHHHHHHHHHHhhHHhc
Confidence            999999999999999999999999999999999999999987764            36788999999999999999999


Q ss_pred             hhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 011118          406 DLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHF  485 (493)
Q Consensus       406 Dl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rghl~h~  485 (493)
                      |++++|++||+|||++|+.++|+|+|+|+.+|+++++++|++|.|.+|+.+.++|+.+|..|+.+|.+|+.|.|.|.+|+
T Consensus       404 DlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilvIi~pnp~~F~iltliS~~fVs~g~m~y~~~l~q~~~~~~hl  483 (503)
T KOG2601|consen  404 DLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDILVIIVPNPKDFGILTLISFSFVSLGHMFYTFYLAQIRSHNFHL  483 (503)
T ss_pred             cHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEEEEecCccceeeeeeehhhHhhhhhhhhhhhhhhccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 011118          486 DKL  488 (493)
Q Consensus       486 ~~~  488 (493)
                      ++.
T Consensus       484 ~~~  486 (503)
T KOG2601|consen  484 EKI  486 (503)
T ss_pred             hcC
Confidence            653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=3.7e-34  Score=310.20  Aligned_cols=387  Identities=16%  Similarity=0.146  Sum_probs=289.9

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQ   93 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q   93 (493)
                      ...|+|+++|.++++|++||.|..+|.+|++.++ ++|...+|+.+.++++|.++|+++.|.++||++|||+|+.+++.+
T Consensus         7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~   85 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLR   85 (524)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            4457999999999999999999999999987766 679999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhH
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRI  173 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrri  173 (493)
                      .+..++.+.+   ....   ....    +.+++++++.|+.+.+..++.+..     +|.++++   ++|.++|+....+
T Consensus        86 ~~~~~~L~~l---~~~~---~~~~----~~Ll~~~fl~g~~~a~~~PA~~A~-----ip~lV~~---~~L~~A~al~s~~  147 (524)
T PF05977_consen   86 ALVALLLAVL---AFFG---LLSP----WLLLILTFLLGIGSAFFNPAWQAI-----IPELVPK---EDLPAANALNSIS  147 (524)
T ss_pred             HHHHHHHHHH---HHhC---cCCH----HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhccH---hhHHHHHHHHHHH
Confidence            7653322221   1110   1122    233344557799999999998888     8999886   6899999999999


Q ss_pred             HHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccc
Q 011118          174 DLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERE  253 (493)
Q Consensus       174 Dl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (493)
                      ..++.++||.++|.+++.+|...+.    ..|++||++...++.++.   |+..           +++ .+         
T Consensus       148 ~niar~iGPalgG~Lva~~G~~~~f----~inalsfl~~i~~l~~~~---~~~~-----------~~~-~~---------  199 (524)
T PF05977_consen  148 FNIARIIGPALGGILVAFFGAAAAF----LINALSFLISILALLRWK---PPPP-----------PSS-LP---------  199 (524)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcc---cccc-----------ccc-cc---------
Confidence            9999999999999999999965554    889999999877776551   1100           000 00         


Q ss_pred             cccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHHH
Q 011118          254 SLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIG  331 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~iG  331 (493)
                                   +    +++.++     +++|+|+..++|.++..+..+.+++.. -.+..++..|.++ .|.++..+|
T Consensus       200 -------------~----e~~~~~-----l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yG  257 (524)
T PF05977_consen  200 -------------R----ERFFSA-----LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYG  257 (524)
T ss_pred             -------------h----hhhhhh-----HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHH
Confidence                         0    111222     689999999999999888877776433 3466778888884 899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          332 IARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       332 ~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      ++.+..++|+++|+++.+++.+|++..|....+...    ...+.+.. +.+..+..    +...++..++.-..+...+
T Consensus       258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~----~a~~~~~lal~~~~~~~----~~~l~l~G~~~~~~~~~~~  329 (524)
T PF05977_consen  258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLL----FALALLLLALSPSFWLA----LIALFLAGAAWIIANSSLN  329 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHH----HHHHHHHHhcchHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999877655444321    11111111 12212221    2223333444456678888


Q ss_pred             hhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          411 QQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYR  477 (493)
Q Consensus       411 ~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~  477 (493)
                      .++|+.+|++.|||++++..++.++. ++++++.|.+...-+.-..+.+.+++.+.++.+.+...+++
T Consensus       330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~  397 (524)
T PF05977_consen  330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQ  397 (524)
T ss_pred             HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999888887 99999999999887777777665555545444444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=1.2e-20  Score=197.67  Aligned_cols=385  Identities=15%  Similarity=0.038  Sum_probs=246.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |+++.++.+++++..||.+..++.+... .-++.|....+.......++..+++|+.|.+.||++|||++..+++.+.+.
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~   81 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLG   81 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHH
Confidence            5899999999999999999999999874 455667778899999999999999999999999999999999999877654


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      .+. +    . ...      +.   ....   .+.|..+....++ ..++-+||+    ++   +++.++|+.+......
T Consensus        82 ~~~-~----~-~~~------~~---~~~r---~l~G~~~a~~~pa-~~a~i~~~~----~~---~~~~~a~~~~~~~~~~  135 (393)
T PRK11195         82 CLL-M----L-FGI------HP---LLAY---GLVGIGAAAYSPA-KYGILTELL----PG---EKLVKANGWMEGSTIA  135 (393)
T ss_pred             HHH-H----H-HHH------HH---HHHH---HHHHHHHHHHHHH-HHHHHHHHc----CH---HHHHHHHHHHHHHHHH
Confidence            211 1    1 111      11   1111   2346667777777 444445665    43   6799999999999999


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      +.++||.++|.+.+.. .....    ..+.+.++...+...    ..|+.+++   +     + ..+.            
T Consensus       136 ~~~~Gp~lgG~l~~~~-~~~~~----~i~~~~~~~~~~~~~----~l~~~~~~---~-----~-~~~~------------  185 (393)
T PRK11195        136 AILLGTVLGGALADPH-AEAAL----AVCALIYLLAALFNL----FIPRLGAR---R-----P-GQSW------------  185 (393)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHh----cCCCCccc---c-----c-ccCC------------
Confidence            9999999999998853 32222    455555544433222    34432100   0     0 0000            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIAR  334 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r  334 (493)
                          +     .    ++..++     .+++++..+++|.++..+....++ +........+..|+.+ .|+++.+.|.+.
T Consensus       186 ----~-----~----~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~  247 (393)
T PRK11195        186 ----N-----P----IALLRD-----FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQ  247 (393)
T ss_pred             ----C-----H----HHHHHH-----HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Confidence                0     0    000111     245566667888877766555333 3323344455667774 899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQ  414 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Q  414 (493)
                      +..++++++|+++.+++.+|.+..+....+..   .... .....+.+ +   .........+..+|...++...++.+|
T Consensus       248 ~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~---~~~~-~~~~~~~~-~---~~~~~~~~~~~G~~~g~~~~~~~~~~q  319 (393)
T PRK11195        248 AVVAIGIAVGAGAAARLVTLETVLRVLPAGIL---MGLV-VLLMALQH-S---LLPAYPLLILIGALGGFFVVPMNALLQ  319 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccchHHHHHH---HHHH-HHHHHHHh-H---HHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            99999999999999999998886665443322   1110 11111111 1   122223333445566677888999999


Q ss_pred             ccCCCCc-chhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhh
Q 011118          415 DLVPESD-RCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFDK  487 (493)
Q Consensus       415 e~vp~~~-rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rghl~h~~~  487 (493)
                      +..|++. +|++.++.+..+++. .++.-+.+.+ ..-+-....++...+.+ ...++-..| |..|.+.-++|.
T Consensus       320 ~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~  391 (393)
T PRK11195        320 HRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLL-VALAMALLW-RWHRRNQRQFDS  391 (393)
T ss_pred             hhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHH-HHHHHHHHH-HHHHhccccccC
Confidence            9877765 899999999999999 5555555544 33344444443333333 444444455 333333344443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.88  E-value=1.8e-20  Score=196.61  Aligned_cols=395  Identities=14%  Similarity=0.089  Sum_probs=253.6

Q ss_pred             CCCCCcccccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc
Q 011118            1 MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL   80 (493)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~   80 (493)
                      ||.|+-...-+.-...|.++.++++++++..|+.+..+++|+++.+.. .+....+.......++.++.++..|.+.||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~   79 (417)
T PRK10489          1 MNKQSWLLDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMT-GSTLQVGLSVTLTGGAMFIGLMVGGVLADRY   79 (417)
T ss_pred             CcHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence            444444322222233468889999999999999999999999877764 5778899999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCCh
Q 011118           81 TYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPP  160 (493)
Q Consensus        81 ~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~  160 (493)
                      +|||++..+.+...+........    ..   ....++..+   ++...+.|....+..++.+..     ++.++++   
T Consensus        80 g~~~~l~~~~~~~~~~~~~~~~~----~~---~~~~~~~~l---~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~---  141 (417)
T PRK10489         80 DRKKLILLARGTCGLGFIGLALN----AF---LPEPSLLAI---YLLGLWDGFFGSLGVTALLAA-----TPALVGR---  141 (417)
T ss_pred             CCceEEEehHHHHHHHHHHHHHH----HH---cCCCcHHHH---HHHHHHHHHHHHHHHHHHhhh-----hhhccCH---
Confidence            99999888765544432211110    01   011122121   112223344444444443333     3333343   


Q ss_pred             hhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCc
Q 011118          161 EALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPI  240 (493)
Q Consensus       161 ~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~  240 (493)
                      ++..+.|+.......++.++||.++|.+....+.+....    .+.+..++-.+++.    +.|+.+++           
T Consensus       142 ~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~----~~~~~~~~~~~~~~----~l~~~~~~-----------  202 (417)
T PRK10489        142 ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG----LAAAGTFITLLPLL----RLPALPPP-----------  202 (417)
T ss_pred             HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHH----hCCCCCCC-----------
Confidence            568899999999999999999999999988777665543    23333333333322    34432100           


Q ss_pred             ccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhhhhhHHHHHH
Q 011118          241 DMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATL  320 (493)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~f~~l~~~yl  320 (493)
                      +.++                . ..  .    +    +     ..++++..+++|.++..+...+.++...++......|+
T Consensus       203 ~~~~----------------~-~~--~----~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  250 (417)
T PRK10489        203 PQPR----------------E-HP--L----R----S-----LLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALA  250 (417)
T ss_pred             Cccc----------------c-cc--h----H----H-----HHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHH
Confidence            0000                0 00  0    0    0     23455666788877766655544433345566777888


Q ss_pred             HH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhh
Q 011118          321 EW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSR  399 (493)
Q Consensus       321 ~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR  399 (493)
                      ++ .|+++...|.+.+..+++++.|+++.+++.+|.+..|....+..    +...+.......++..   ....+.....
T Consensus       251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~g  323 (417)
T PRK10489        251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL----GSFLAVGLFGLMPMWI---LAVLCLALFG  323 (417)
T ss_pred             HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH----HHHHHHHHHHccchHH---HHHHHHHHHH
Confidence            87 89999999999999999999999999999988765555443332    1222222121111211   1222233333


Q ss_pred             chhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Q 011118          400 LGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYT  472 (493)
Q Consensus       400 ~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~  472 (493)
                      +|.-..+.....++|+.+|++.||+++|+.++.+++. .++..+.+.+....+......+...+....+..++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            4444556777789999999999999999999988866 899999999988777666666666555555554444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.88  E-value=3.4e-20  Score=218.29  Aligned_cols=364  Identities=12%  Similarity=0.071  Sum_probs=240.5

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSL-----LFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIW   89 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sl-----l~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~   89 (493)
                      ..++++++|.++++|.+||.+..++++.++.....++.     ...++...+..++.++++|++|.++||++||++++..
T Consensus         9 ~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~   88 (1140)
T PRK06814          9 KSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKIL   88 (1140)
T ss_pred             hccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHH
Confidence            45789999999999999999999998876654444443     5678888889999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhH
Q 011118           90 LVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSI  169 (493)
Q Consensus        90 ~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~  169 (493)
                      +.+..+..+++..   . ..    . .+   +..+++...+.|..+.++.++.+. +-+||+    .+   +++.++|+.
T Consensus        89 ~~~~~~~~~~~~~---~-~~----~-~s---~~~l~~~~~l~gi~~a~~~p~~~a-~l~~~~----~~---~~~~~a~~~  148 (1140)
T PRK06814         89 KFAEIGIAALAIY---G-FH----L-NS---VPLLFAALFLMGIHSALFGPIKYS-ILPDHL----NK---DELLGANAL  148 (1140)
T ss_pred             HHHHHHHHHHHHH---H-HH----H-hh---HHHHHHHHHHHHHHHHhhchHHHH-hhHhhc----Cc---cccchhhHH
Confidence            7655544322111   1 11    0 11   122333344567888888888444 446665    44   579999999


Q ss_pred             HHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCc
Q 011118          170 IRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMP  249 (493)
Q Consensus       170 mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      +.....++.++||.++|+++...|........    ++..+....+..    .+|+....   +     + + ..     
T Consensus       149 ~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~---~-----~-~-~~-----  205 (1140)
T PRK06814        149 VEAGTFIAILLGTIIGGLATISGNFVILVALL----MGIAVLGWLASL----FIPKTGNA---A-----P-D-LK-----  205 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHHHHHHh----hCCCCCCC---C-----C-C-Ce-----
Confidence            99999999999999999999988765554211    122222111211    23321100   0     0 0 00     


Q ss_pred             cccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHH-HHHhhhhhhHHHHHHHH-cCCCc
Q 011118          250 RERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL-FFTVLSFGTLMTATLEW-EGIPA  327 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalL-y~tVL~f~~l~~~yl~~-~gls~  327 (493)
                      .          . ..         ..++     ..+++++..++|.++.......+ ++....+...+..|+++ .|.++
T Consensus       206 ~----------~-~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~  260 (1140)
T PRK06814        206 I----------D-RN---------IIRS-----TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDE  260 (1140)
T ss_pred             e----------c-cc---------hHHH-----HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch
Confidence            0          0 00         0011     24577777888877766555433 34334566678899986 79999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHH-HHHH---------------HHhhcchHHHHHHH
Q 011118          328 YIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLL-ICVA---------------SIWIHNSLVAAYML  391 (493)
Q Consensus       328 ~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~-~~v~---------------~~~~~~~~~s~~~l  391 (493)
                      ...|.+.++-++++++|.++.+++.++.+..+...++...-.++.. .+..               .++...+   ...+
T Consensus       261 ~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  337 (1140)
T PRK06814        261 NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRI  337 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHH
Confidence            9999999999999999999999999877654433333221111111 1110               0010011   1222


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      ..+.++..+|...+......++|+.+|+++|||+.|+.+..++++ .++..+.+.+...
T Consensus       338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444456677788899999999999999999999999999987 8888888877643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.84  E-value=2.5e-18  Score=174.13  Aligned_cols=358  Identities=18%  Similarity=0.139  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFI   98 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~   98 (493)
                      ++.++.+++++.+|+.+...++|+++.+ ...|....++......++.++++++.|.+.||++|||++..+.+...+...
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVA   79 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHH
Confidence            3568899999999999999999998876 567888999999999999999999999999999999999888654443311


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHH
Q 011118           99 VAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCK  178 (493)
Q Consensus        99 ~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~  178 (493)
                      +     .. ... .....+...+   ++...+.|.......++. .+.-.||.    ++   ++..+.|+..+.....+.
T Consensus        80 ~-----~~-~~~-~~~~~~~~~~---~~~~~l~g~~~~~~~~~~-~~~~~~~~----~~---~~~~~~~~~~~~~~~~g~  141 (365)
T TIGR00900        80 V-----LP-FVA-LLGGLNIWQV---YVLAGILAIAQAFFTPAY-QAMLPDLV----PE---EQLTQANSLSQAVRSLFY  141 (365)
T ss_pred             H-----HH-HHH-HcCCCcHHHH---HHHHHHHHHHHHHHHHHH-HHHHHhcC----CH---HHHHHHHhHHHHHHHHHH
Confidence            1     11 111 0011122221   111223455555555553 33344554    33   578999999999999999


Q ss_pred             hhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccccc
Q 011118          179 LLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSH  258 (493)
Q Consensus       179 l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (493)
                      ++||.++|.+.+..|.+....    .+.+..++...++..+  +.|+.+++           +.++     .        
T Consensus       142 ~~g~~l~~~l~~~~g~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~~-----~--------  191 (365)
T TIGR00900       142 IVGPGIGGLMYATLGIKWAIW----VDAVGFAISALLIVSV--RIPELAAS-----------EIQA-----L--------  191 (365)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHhc--ccccCCCc-----------cccc-----c--------
Confidence            999999999999888776653    3333333333333322  22321100           0000     0        


Q ss_pred             ccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhh-hHHHHHHHH-cCCCchHHHHHHH
Q 011118          259 DENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFG-TLMTATLEW-EGIPAYIIGIARG  335 (493)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~-~l~~~yl~~-~gls~~~iG~~r~  335 (493)
                          .++..    +    +     ..++++..+++|.++..+....++... .+.. ..++.|.++ .|.++...|.+.+
T Consensus       192 ----~~~~~----~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (365)
T TIGR00900       192 ----SNAVL----R----D-----TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLA  254 (365)
T ss_pred             ----chhHH----H----H-----HHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHH
Confidence                00000    0    1     234555566788777666666555333 3333 566667775 7999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhc
Q 011118          336 ISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQD  415 (493)
Q Consensus       336 ~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe  415 (493)
                      ..++++++++++.+++.||.|..+....+....   ........+.++   +...+....++..+|.-........++|+
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  328 (365)
T TIGR00900       255 AFGLGALLGALLLGLLGRYFKRMALMTGAIFVI---GLAILVVGLTPP---NFPLFLVLWFAIGVGYGPINVPQGTLLQR  328 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH---HHHHHHHHhhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999776655443211   111111122221   12233333444445555668888999999


Q ss_pred             cCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          416 LVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       416 ~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      .+|+++||++.|+.++.+++. .++..+.+.+..
T Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       329 RVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988 667777776653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.76  E-value=1.8e-15  Score=177.96  Aligned_cols=359  Identities=14%  Similarity=0.078  Sum_probs=224.9

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPD--SLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLV   91 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~--sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~   91 (493)
                      ...+.|+.++.+++++..+|++...++..++...+..  +....++...+..++.++++++.|.+.||++||+++..+.+
T Consensus         6 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~   85 (1146)
T PRK08633          6 LKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKL   85 (1146)
T ss_pred             hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHH
Confidence            4557899999999999999999988888877665543  44557888888999999999999999999999999998886


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHH
Q 011118           92 TQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIR  171 (493)
Q Consensus        92 ~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mr  171 (493)
                      +..+..++...+    ..    . .+   +..+++...+.|....+..++.. ++-.||+    .+   +++.++|+...
T Consensus        86 ~~~~~~~~~~~~----~~----~-~~---~~~l~~~r~l~G~~~~~~~~~~~-~~i~~~~----~~---~~r~~~~~~~~  145 (1146)
T PRK08633         86 FEVGLTLLIVLA----YY----L-GW---FWLAFAVTFLLGAQSAIYSPAKY-GIIPELV----GK---ENLSRANGLLE  145 (1146)
T ss_pred             HHHHHHHHHHHH----HH----H-cc---HHHHHHHHHHHHHHHHhhchHHH-hhhHHhc----Cc---ccchhhhhHHH
Confidence            665553221111    11    0 11   12222223345666666666643 3344554    33   56899999999


Q ss_pred             hHHHHHHhhhhHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccc
Q 011118          172 RIDLTCKLLAPAITGFIISF--------VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDME  243 (493)
Q Consensus       172 riDl~~~l~gP~~~G~l~~~--------~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~  243 (493)
                      ....++.++||.++|.+...        .+......+  .......++-.++..    ..|+..+.++..       + +
T Consensus       146 ~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------~-~  211 (1146)
T PRK08633        146 AFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAG--LVLLAVAVLGLIFAY----RLPKVPAAAPEV-------F-D  211 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccchHHHH--HHHHHHHHHHHHHHh----cCcCCCCCCccc-------c-c
Confidence            99999999999999999875        221111111  111111111111111    234322100000       0 0


Q ss_pred             cccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHH-
Q 011118          244 QSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLE-  321 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~-  321 (493)
                      .               +....  .    +    +     ..++++..+++|.++..+....++ +....+...+..|+. 
T Consensus       212 ~---------------~~~~~--~----~----~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (1146)
T PRK08633        212 K---------------KKYLF--P----K----L-----LWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKE  261 (1146)
T ss_pred             c---------------ccccc--H----H----H-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            0               00000  0    0    0     234455566777766555444333 333345556777877 


Q ss_pred             HcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHhhh
Q 011118          322 WEGIPAY-IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVAS-IWIHNSLVAAYMLMVGVATSR  399 (493)
Q Consensus       322 ~~gls~~-~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~-~~~~~~~~s~~~l~~gi~~SR  399 (493)
                      ..|+++. ..|++.+..++++++|+++.+++.+|.+..+...++..    +...+.+. .+.+    +...++.+.++..
T Consensus       262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~g  333 (1146)
T PRK08633        262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL----GLALSLFLLPTAP----SLASVLVLFFLFG  333 (1146)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH----HHHHHHHHHHHhh----hHHHHHHHHHHHH
Confidence            4899999 99999999999999999999999999986655444432    11111111 1222    2223333344445


Q ss_pred             chhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          400 LGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       400 ~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                      ++.-++......++|+.+|+++||++.|+.+.++++...+...++
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            566666778889999999999999999999999887754433333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.75  E-value=1.8e-14  Score=149.62  Aligned_cols=362  Identities=13%  Similarity=0.029  Sum_probs=211.4

Q ss_pred             cccccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--Cch--HHHHHHHHHHHHHHHhhhccceeeecccc
Q 011118            6 LIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWP--DSL--LFAAIYGAVESASIALFGPIVGHWVDKLT   81 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~--~sl--l~~sv~gl~~~l~~llfg~~vG~~vDr~~   81 (493)
                      +.|.|++..-+|.+..+|.+.+++.+++-++...+|.++.+..-  ++.  ...+.......+...+++|..|.+.||++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g   82 (408)
T PRK09874          3 PCENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG   82 (408)
T ss_pred             CCcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence            45667888788899999999999999999999999998877421  111  23466666777888999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChh
Q 011118           82 YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPE  161 (493)
Q Consensus        82 R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~  161 (493)
                      ||+++..+.+...+.    +.+  ....      .++..+.+..   .+.|......... ... -.||.    ++   +
T Consensus        83 ~r~~~~~~~~~~~~~----~~~--~~~~------~~~~~~~~~~---~~~g~~~~~~~~~-~~~-~~~~~----~~---~  138 (408)
T PRK09874         83 RKIMLLRSALGMGIV----MVL--MGLA------QNIWQFLILR---ALLGLLGGFVPNA-NAL-IATQV----PR---N  138 (408)
T ss_pred             cHHHHHHHHHHHHHH----HHH--HHHH------hhHHHHHHHH---HHHHHhhhhHHhH-HHH-HHHhc----CH---h
Confidence            999988775433322    111  1111      1222222111   1223333333222 222 23443    22   4


Q ss_pred             hhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcc
Q 011118          162 ALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPID  241 (493)
Q Consensus       162 ~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~  241 (493)
                      +..+.|+..........++||.++|.+.+..+.+.+..+..+...+..+.-..       ..|+...          +.+
T Consensus       139 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----------~~~  201 (408)
T PRK09874        139 KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF-------CIRENFQ----------PVS  201 (408)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-------HhccCcc----------ccc
Confidence            57888999999999999999999999988778766654333333333222111       1121000          000


Q ss_pred             cccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeeccc-chHHHHHHHHHHHHh-hhhhhHHHHH
Q 011118          242 MEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQE-VVLPGVSLALLFFTV-LSFGTLMTAT  319 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~-v~la~~alalLy~tV-L~f~~l~~~y  319 (493)
                      .++                  ..+ .    +            +.++ .+++| .++..+...+.+... -.+...+..|
T Consensus       202 ~~~------------------~~~-~----~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
T PRK09874        202 KKE------------------MLH-M----R------------EVVT-SLKNPKLVLSLFVTTLIIQVATGSIAPILTLY  245 (408)
T ss_pred             chh------------------hhH-H----H------------HHHH-hCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000                  000 0    0            1111 12333 333333333333222 2355667778


Q ss_pred             HHHcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011118          320 LEWEGIPAY----IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGV  395 (493)
Q Consensus       320 l~~~gls~~----~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi  395 (493)
                      ..+.+.+..    ..|.+.++.+++++++....+++.+|+|..|...++.....+   ..+...+.+. .+..   ....
T Consensus       246 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~---~~~~  318 (408)
T PRK09874        246 VRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVL---LLIPMSFVQT-PLQL---GILR  318 (408)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH---HHHHHHHhcc-HHHH---HHHH
Confidence            876543333    345666666777888888899999999987776655542211   1111122221 1211   1112


Q ss_pred             HhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC
Q 011118          396 ATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       396 ~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                      ++..++.-.+-.....++|+..|++++|++.|...+.+++. .++..+.+.+...-+
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g  375 (408)
T PRK09874        319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG  375 (408)
T ss_pred             HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            22223333446667788899999999999999999998877 677777777765433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.73  E-value=1.8e-14  Score=149.92  Aligned_cols=383  Identities=14%  Similarity=0.153  Sum_probs=221.7

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQN   94 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~   94 (493)
                      .++++..++++++++..|..|-....|+++.+-++.|....+....+..++..+++++.|.++||++|||++..+++.-.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            44788999999999999999999999998888888889999999999999999999999999999999999999875544


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHH
Q 011118           95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID  174 (493)
Q Consensus        95 ~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriD  174 (493)
                      ++    +..... ... . .......+..+++.-.+.|+......++....+ .||+    ++   ++..++++....-.
T Consensus        93 ~~----~~~~~~-~~~-~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-~~~~----~~---~~r~~~~~~~~~~~  157 (399)
T PRK05122         93 LS----GLLYLL-AGL-L-AAWPVLSLLLLLLGRLLLGIGESLAGTGSILWG-IGRV----GA---LHTGRVISWNGIAT  157 (399)
T ss_pred             HH----HHHHHH-hhh-h-hccchhHHHHHHHHHHHHHhhHHhhcchHHHHH-Hhhc----Ch---hhhccchhhhhhhh
Confidence            43    111011 110 0 110111222233233345666666655543332 3443    33   45678888887778


Q ss_pred             HHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          175 LTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       175 l~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      ..+.++||.++|.+....|.+....+.    .+..++-.++   + ...|+.+           +++ ++          
T Consensus       158 ~~g~~~g~~l~~~l~~~~g~~~~~~~~----~~~~~~~~~~---~-~~~~~~~-----------~~~-~~----------  207 (399)
T PRK05122        158 YGALAIGAPLGVLLYHWGGLAGLGLLI----MLLALLGLLL---A-RPRPAVP-----------PVK-GE----------  207 (399)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHH----HHHHHHHHHH---H-hcCCCCC-----------CCC-cc----------
Confidence            888999999999999887865433211    1111111111   1 1222110           000 00          


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIAR  334 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r  334 (493)
                                  .++. ++            .++.++...     ..+.+..+........+..|.+++|++.  .+...
T Consensus       208 ------------~~~~-~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  255 (399)
T PRK05122        208 ------------RLPF-RR------------VLGRVWPYG-----MGLALASIGFGTIATFITLYYAARGWDG--AALAL  255 (399)
T ss_pred             ------------chhH-HH------------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHccccc--chHHH
Confidence                        0000 00            001011111     1111111111123334556777777743  35555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQ  414 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Q  414 (493)
                      +.-.++++.+.+..+++.+|+|..|....+...    ...+........+.+.   +..+.++..+|.-..........+
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~l~G~~~~~~~~~~~~~~~  328 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLV----EILGLLLLWLAPSPWM---ALIGAALTGFGFSLVFPALGVEAV  328 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH----HHHHHHHHHHhccHHH---HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            666778889999999999999987766555432    2222221111112111   122223333333334455556777


Q ss_pred             ccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011118          415 DLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLF  483 (493)
Q Consensus       415 e~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rghl~  483 (493)
                      +.+|+++||++.|+.++.+++. .++..+.+.+...-+ +........+.... +.+...+.++.++|.+
T Consensus       329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  396 (399)
T PRK05122        329 KRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALL-GLALTWLLYRRAPRAV  396 (399)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHH-HHHHHHHhcccccccC
Confidence            8899999999999999888877 677788887765544 33333333222222 3344445566777765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.72  E-value=1.8e-14  Score=151.37  Aligned_cols=354  Identities=10%  Similarity=0.058  Sum_probs=218.6

Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHH
Q 011118            8 VQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQ   87 (493)
Q Consensus         8 ~~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~   87 (493)
                      ..|..++|+   ..++.+.++...|--+---..|.++....+-|...++.......++.+++++..|.+.||++||+++.
T Consensus         4 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~   80 (400)
T PRK11646          4 VSQARNLGK---YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIV   80 (400)
T ss_pred             CcccccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHH
Confidence            455666666   66778888999998887777788888888889999999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhh
Q 011118           88 IWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMN  167 (493)
Q Consensus        88 ~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~N  167 (493)
                      .+++...+...       .+..    ....|..+    +...+.|+...++.++.+.. -.||+    ++   +++.+.+
T Consensus        81 ~~~~~~~~~~~-------~~~~----~~~~~~l~----~~~~l~g~~~~~~~~~~~~~-~~~~~----~~---~~~~~a~  137 (400)
T PRK11646         81 TGMLMRAAGFA-------TMAI----AHEPWLLW----LSCILSGLGGTLFDPPRTAL-VIKLI----RP---HQRGRFF  137 (400)
T ss_pred             HHHHHHHHHHH-------HHHH----hccHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHhc----CH---HHHHHHH
Confidence            88865555421       1111    11112111    11223455555555553333 23443    32   6789999


Q ss_pred             hHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccC
Q 011118          168 SIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTS  247 (493)
Q Consensus       168 a~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~  247 (493)
                      +..+..+..+..+||.++|.+. ..|.+....+    +++..++..++....   .|+..+    +     +   .+   
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~----~~~~~~~~~i~~~~~---~~~~~~----~-----~---~~---  194 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT----GAVLFVLAAAFNAWL---LPAYKL----S-----T---VR---  194 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH----HHHHHHHHHHHHHHh---CCcccc----c-----c---cc---
Confidence            9999999999999999999998 4676655433    333333332222211   232110    0     0   00   


Q ss_pred             CccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHHcCCC
Q 011118          248 MPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEWEGIP  326 (493)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~~gls  326 (493)
                                      .  +               ..++++..+++|.++........+ +........+..|+++.+.+
T Consensus       195 ----------------~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  241 (400)
T PRK11646        195 ----------------T--P---------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGS  241 (400)
T ss_pred             ----------------h--h---------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCC
Confidence                            0  0               123344445666555433332222 22223334566788877678


Q ss_pred             chHHHHHHHHHHHHHHHHH-HHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhh
Q 011118          327 AYIIGIARGISATIGIAAT-ILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWM  404 (493)
Q Consensus       327 ~~~iG~~r~~~av~GllgT-~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~  404 (493)
                      +..+|.+.++.++.++.+. .+.++..||.+..|....+..    ....+.... +.+ ...   .+....++..+|.-.
T Consensus       242 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~~~~~~~l~~~~-~~~---~~~~~~~l~~~g~~~  313 (400)
T PRK11646        242 PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLL----IMSLSMFPIGMVS-NLQ---QLFTLICLFYIGSII  313 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH----HHHHHHHHHHHhh-hHH---HHHHHHHHHHHHHHH
Confidence            8999999888777776544 444555566765554333322    111111111 122 111   111222233345556


Q ss_pred             hhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC
Q 011118          405 FDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       405 fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                      .+.....+.|+.+|+++||++.|..+...+.. .++..+.|.+....+
T Consensus       314 ~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        314 AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            67788899999999999999999999888777 788888888877653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.72  E-value=9.4e-16  Score=154.71  Aligned_cols=345  Identities=20%  Similarity=0.235  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAG  101 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~  101 (493)
                      |+.+.+++..++.+...+.|..+.+-++-|....+.......++..+++++.|.+.||++|||++..+.+...+. .+  
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~-~~--   77 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG-SL--   77 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH-HH--
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH-HH--
Confidence            578899999999999999997667777778888999999999999999999999999999999998887665555 11  


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhh
Q 011118          102 VSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA  181 (493)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~g  181 (493)
                         +. .+    ....+ .+.   +...+.|.......++.. ++-.||.    ++   ++..+.|+.+......+.++|
T Consensus        78 ---~~-~~----~~~~~-~~~---~~~~l~g~~~~~~~~~~~-~~i~~~~----~~---~~~~~~~~~~~~~~~~g~~~g  137 (352)
T PF07690_consen   78 ---LL-AF----ASNFW-LLL---IARFLLGIGSGFFSPASN-ALIADWF----PP---EERGRAFGILSAGFSLGSILG  137 (352)
T ss_dssp             ---HH-HH----HCCHH-HHH---HHHHHHHHHHHHHHHHHH-HHHHHCC----CT---CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---Hh-hh----hhhHH-HHh---hhcccccccccccccccc-ccccccc----hh---hhhhhccccccchhhhhhhcc
Confidence               11 11    01222 222   122244556566665533 3345665    33   468999999999999999999


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccc
Q 011118          182 PAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN  261 (493)
Q Consensus       182 P~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (493)
                      |.++|.+.+..|.+....+.++...++.+.-..       ..|+.+.+++++         ++     .         +.
T Consensus       138 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~-------~~~~~~~~~~~~---------~~-----~---------~~  187 (352)
T PF07690_consen  138 PLLGGFLISYFGWRWAFLISAILSLIAAILFIL-------FLPEPPPPRERE---------SP-----K---------ES  187 (352)
T ss_dssp             HHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC-------CC---STTTT-----------SS-----T---------TT
T ss_pred             cchhhhhhhccccccccccccchhhhhhhhHhh-------hhhhcccccccc---------cc-----c---------cc
Confidence            999999998777666654444444444331111       112111000000         00     0         00


Q ss_pred             hhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHH-HcCCC-chHHHHHHHHHH
Q 011118          262 NAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLE-WEGIP-AYIIGIARGISA  338 (493)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~-~~gls-~~~iG~~r~~~a  338 (493)
                      .... .        ++     ..++|+...++|.++..+...+++ +..-.+...+..|+. ..|++ +...|.+.++..
T Consensus       188 ~~~~-~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  253 (352)
T PF07690_consen  188 ESKK-P--------KP-----LKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFG  253 (352)
T ss_dssp             T--H-H--------HC-----CCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHH
T ss_pred             cccc-c--------cc-----cccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHH
Confidence            0000 0        01     345678888888776333333333 233456777788855 68999 899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCC
Q 011118          339 TIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVP  418 (493)
Q Consensus       339 v~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp  418 (493)
                      +.++.+.++.+++.+|+|..+...+...    +...+...........+........++..++.-..+.....+.|+.+|
T Consensus       254 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  329 (352)
T PF07690_consen  254 IVGIIGSLLAGRLSDRFGRRRRLLIAIL----LLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVP  329 (352)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999997666554443    222222222111111111222223333445555669999999999999


Q ss_pred             CCcchhHHHHHHHHHHhhH
Q 011118          419 ESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       419 ~~~rG~v~gv~~sl~~~f~  437 (493)
                      +++||++.|+.++.+++..
T Consensus       330 ~~~~g~~~g~~~~~~~~~~  348 (352)
T PF07690_consen  330 PEYRGTAFGLFNSIGSLGG  348 (352)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK12382 putative transporter; Provisional

Probab=99.68  E-value=1.8e-13  Score=142.25  Aligned_cols=359  Identities=14%  Similarity=0.089  Sum_probs=209.5

Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHH
Q 011118            9 QEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQI   88 (493)
Q Consensus         9 ~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~   88 (493)
                      .|+++.-++.+..++.+++++..+..+..=.+|+++.+-++-|....++......++..+++|+.|.++||++|||++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (392)
T PRK12382          7 TETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ   86 (392)
T ss_pred             CcCCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence            45566666788889999999999988887778877777777788999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhh
Q 011118           89 WLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNS  168 (493)
Q Consensus        89 ~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na  168 (493)
                      +.+...++    +.........   .......+..+++.-.+.|+......++.. +.-.||+    ++   ++..+.++
T Consensus        87 ~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~----~~---~~r~~a~~  151 (392)
T PRK12382         87 GMLACGLA----GLAYLLAAIL---PVSAPFKFALLVVGRLILGFGESQLLTGAL-TWGLGLV----GP---KHSGKVMS  151 (392)
T ss_pred             HHHHHHHH----HHHHHhhhcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhC----Cc---cccchhhh
Confidence            87543322    1110110100   000111222222222344555554444432 2223444    33   45788888


Q ss_pred             HHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCC
Q 011118          169 IIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM  248 (493)
Q Consensus       169 ~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      .+......+.++||.++|.+....|.....    ....+..+...++    +.+.|+.+           ++  ++    
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~----~~~~~~~~~~~~~----~~~~~~~~-----------~~--~~----  206 (392)
T PRK12382        152 WNGMAMYGALAAGAPLGLLLHSHFGFAALA----LTTMVLPLLAWAF----NGTVRKVP-----------AH--AG----  206 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHH----HHHHHHHHHHHHH----HHhccCCC-----------CC--cc----
Confidence            888888889999999999998877765322    2222222211111    12233211           00  00    


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhhhhhHHHHHHHHcCCCch
Q 011118          249 PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATLEWEGIPAY  328 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~f~~l~~~yl~~~gls~~  328 (493)
                       +          .. +  .    ++            .++..++     ..+...+..+...........|+.+.|.++.
T Consensus       207 -~----------~~-~--~----~~------------~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  251 (392)
T PRK12382        207 -E----------RP-S--L----WS------------VVGLIWK-----PGLGLALQGVGFAVIGTFVSLYFASKGWAMA  251 (392)
T ss_pred             -c----------Cc-h--H----HH------------HHHHHHH-----hHHHHHHHHHHHhHHHHHHHHHHHhcCCchh
Confidence             0          00 0  0    00            0111111     1111111111111223344567777777654


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhh
Q 011118          329 IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       329 ~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~  408 (493)
                        |......+++++.+.+..+++.+|+|..|...++.....+..   +.....+.. +   .+..+.++..+|.-.....
T Consensus       252 --~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~---~~~~~~~~~-~---~~~~~~~l~g~~~~~~~~~  322 (392)
T PRK12382        252 --GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGL---LLLWLAPTA-W---VALAGAALTGAGCSLIFPA  322 (392)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHH---HHHHHcccH-H---HHHHHHHHHHHHHHhHHHH
Confidence              445556677788999999999999998887766554322211   111122221 1   1112222222333333445


Q ss_pred             hhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC
Q 011118          409 VIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                      .....++..|+++||+.+|+.++..++. .++..+.+.+.+.-+
T Consensus       323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g  366 (392)
T PRK12382        323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG  366 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6667788899999999999999988877 788888888876544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.66  E-value=2.3e-13  Score=142.73  Aligned_cols=369  Identities=11%  Similarity=0.044  Sum_probs=216.4

Q ss_pred             cCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHH
Q 011118           10 EQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIW   89 (493)
Q Consensus        10 ~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~   89 (493)
                      |.+..+.+.+...+.+.++...+.-+..++.|.+. +-++-|....+.......++.++.+++.|.+.||++||+++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         11 EITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIK-ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            33444456677888999998888888888888855 44555777888888889999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhH
Q 011118           90 LVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSI  169 (493)
Q Consensus        90 ~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~  169 (493)
                      .+.-.+...    +  ....      .++..+..   .-.+.|.......+..... --||.    ++   ++..+.++.
T Consensus        90 ~~~~~~~~~----~--~~~~------~~~~~l~~---~r~l~G~g~g~~~~~~~~~-~~~~~----~~---~~r~~~~~~  146 (426)
T PRK12307         90 IVAYSVGTG----L--SGLA------SGVIMLTL---SRFIVGMGMAGEYACASTY-AVESW----PK---HLKSKASAF  146 (426)
T ss_pred             HHHHHHHHH----H--HHHH------hHHHHHHH---HHHHHHHHHhhHHHHHHHH-HHHhC----CH---hHhhHhhhH
Confidence            755444311    1  1011      11111111   1122333333222222222 22333    22   457788888


Q ss_pred             HHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCc
Q 011118          170 IRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMP  249 (493)
Q Consensus       170 mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      ....-.+..+++|.+.+.+.+..|.+....    .+....+.-.+    +....|+-.+..+++.+   .    +. +  
T Consensus       147 ~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~----i~~~~~~~~~~----~~~~~p~~~~~~~~~~~---~----~~-~--  208 (426)
T PRK12307        147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFF----VGLLPVLLVIY----IRARAPESKEWEEAKLS---G----KG-K--  208 (426)
T ss_pred             HHHHHhHHHHHHHHHHHHHcccCCHHHHHH----HHHHHHHHHHH----HHHHCCCChHHHHhhhh---c----cc-c--
Confidence            777777778888888887777677666543    23333332221    12234542211111000   0    00 0  


Q ss_pred             cccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh----hhhhhHHHHHHHHcCC
Q 011118          250 RERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV----LSFGTLMTATLEWEGI  325 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV----L~f~~l~~~yl~~~gl  325 (493)
                                +....  .    +    .     ...+++..+++|.++.......+++..    ......+..|+.+.|.
T Consensus       209 ----------~~~~~--~----~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  263 (426)
T PRK12307        209 ----------HSQSA--W----S----V-----FSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGF  263 (426)
T ss_pred             ----------ccccc--h----h----h-----hhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                      00000  0    0    0     112344455666665544433333222    1245567888888999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHhhhchhhh
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN-SLVAAYMLMVGVATSRLGLWM  404 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~-~~~s~~~l~~gi~~SR~GLw~  404 (493)
                      ++...|.+.+..++++++|+.+.+++.+|+|..+....+.....   .........+. ........+.+......|.  
T Consensus       264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  338 (426)
T PRK12307        264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSF---LFIFPLFRIPQDNYLLLGACLFGLMATNVGV--  338 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHHHHHHHHccccHHHHHHHHHHHHHhcccH--
Confidence            99999999999999999999999999999997776555543211   11111111221 1111222223332222232  


Q ss_pred             hhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC
Q 011118          405 FDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       405 fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                       ......+.||.+|++.||++.|...++.++. .++..+.+.+...-+
T Consensus       339 -~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        339 -GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             -hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence             2334567899999999999999998888877 667777777765544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.65  E-value=2.4e-13  Score=138.08  Aligned_cols=379  Identities=14%  Similarity=0.098  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011118           34 RMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSL  113 (493)
Q Consensus        34 r~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~  113 (493)
                      .+..++.|. +.+-++-|....+.......+..++.+++.|.+.||++||+++..+.+...+.    +.+  ....    
T Consensus        11 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~----~~~--~~~~----   79 (399)
T TIGR00893        11 ANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF----TGL--QAFA----   79 (399)
T ss_pred             HhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHH----HHH--HHHH----
Confidence            566777787 44556667788889999999999999999999999999999988776433332    111  1111    


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhh
Q 011118          114 KSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS  193 (493)
Q Consensus       114 ~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s  193 (493)
                        .++..+.+.   ..+.|.......++.... -.||.    ++   ++..+.++........+.++||.++|.+.+..+
T Consensus        80 --~~~~~~~~~---~~l~g~~~~~~~~~~~~~-~~~~~----~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  146 (399)
T TIGR00893        80 --GAYVSLYIL---RVLLGAAEAPFFPGIILI-VASWF----PA---SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS  146 (399)
T ss_pred             --cCHHHHHHH---HHHHHHHHHhhhhHHHHH-HHHhC----CH---HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence              122222111   123344444444443332 33443    32   568899999999999999999999999988777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHH
Q 011118          194 LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWK  273 (493)
Q Consensus       194 ~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (493)
                      .+......++...+..++    ....   .|+.+++++..+++.+..+.+.    .      ..+.+...+         
T Consensus       147 ~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~---------  200 (399)
T TIGR00893       147 WQWAFIIEGVLGIIWGVL----WLKF---IPDPPQKAKWLTEEEKYIVVGG----L------LAEQQGKGP---------  200 (399)
T ss_pred             chHHHHHHHHHHHHHHHH----hhhe---ecCCCCccccCCHHHHhhcchh----h------ccccccccc---------
Confidence            666554333332222222    1111   1221111000000000000000    0      000000000         


Q ss_pred             HHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          274 IIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPIL  351 (493)
Q Consensus       274 ~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l  351 (493)
                           . +...+.++..+++|.++..+...+++ +....+...+..|+.+ .|.++...|...+...+++++|.++.+++
T Consensus       201 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (399)
T TIGR00893       201 -----S-TPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRL  274 (399)
T ss_pred             -----c-CCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                 0 00123344456667666555555444 3334566677888875 79999999999999999999999999999


Q ss_pred             HhhhchhhhhHHHH--HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHH
Q 011118          352 QSRISTLRTGLWSI--WSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQ  429 (493)
Q Consensus       352 ~~riGl~r~g~~~~--~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~  429 (493)
                      .+|+|-.+......  ..-..++..+......+. .......+......-.+ ..+......+.+|.+|+++||+..|+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (399)
T TIGR00893       275 SDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY-VNIPYAALALVALGFFG-LGAGAIGWALISDNAPGNIAGLTGGLI  352 (399)
T ss_pred             HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhc-hhhhhHHHHHHHhhcChhHHHHHHHHH
Confidence            99998664111110  000011111222111110 01111111111111122 225778889999999999999999999


Q ss_pred             HHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Q 011118          430 NSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAIL  470 (493)
Q Consensus       430 ~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l  470 (493)
                      +...++. -++..+.+.+....+.+.............+..+
T Consensus       353 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       353 NSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             HHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence            9998877 6777788887766554544444443333333333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.65  E-value=3.9e-12  Score=132.93  Aligned_cols=362  Identities=11%  Similarity=0.093  Sum_probs=205.5

Q ss_pred             CCCCCcccccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc
Q 011118            1 MESEPLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL   80 (493)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~   80 (493)
                      |.|+|....-+.=  +...+.++++.+++..+..+.....|.++.+-+.-|.-..+.......+...+++++.|.+.||+
T Consensus         1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~   78 (393)
T PRK15011          1 MHNSPAVSSAKSF--DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKR   78 (393)
T ss_pred             CCCCcccccchhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5666665544333  34678899999999999999999999999888887888888776666777888899999999999


Q ss_pred             chhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCC
Q 011118           81 TYVKV-LQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHP  159 (493)
Q Consensus        81 ~R~~v-~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~  159 (493)
                      .|||. +..+.+.-    ++.+.+ +. +.      .++..+   +++..+.+..+....+. ..++-+||.    ++++
T Consensus        79 g~r~~~~~~~~~~~----~~~~~~-~~-~~------~~~~~l---~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~  138 (393)
T PRK15011         79 GDRKSLIVFCCLLG----VLACTL-FA-WN------RNYFVL---LFVGVFLSSFGSTANPQ-MFALAREHA----DKTG  138 (393)
T ss_pred             cchhHHHHHHHHHH----HHHHHH-HH-Hh------hHHHHH---HHHHHHHHHHHHhhHHH-HHHHHHHHh----hhcc
Confidence            87765 44554221    111111 11 11      111111   11112233344444433 344446665    2211


Q ss_pred             hhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCC
Q 011118          160 PEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMP  239 (493)
Q Consensus       160 ~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~  239 (493)
                       .+....|+.++..-.++.++||.++|.+....|.+......    ++..++-.+.+..   ..|+.++++        +
T Consensus       139 -~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~----~~~~~~~~~~~~~---~~~~~~~~~--------~  202 (393)
T PRK15011        139 -REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSA----AVAFIVCGVMVWL---FLPSMRKEL--------P  202 (393)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHHh---hcCccCCCC--------c
Confidence             23456788888888899999999999999888887655322    2222222222221   234322100        0


Q ss_pred             cccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHH
Q 011118          240 IDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTA  318 (493)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~  318 (493)
                       + ++     .             +  .    +    .     .++      +.+.....+..+.+.+.. -.+...+..
T Consensus       203 -~-~~-----~-------------~--~----~----~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~  241 (393)
T PRK15011        203 -L-AT-----G-------------T--L----E----A-----PRR------NRRDTLLLFVICTLMWGTNSLYIINMPL  241 (393)
T ss_pred             -c-cc-----c-------------c--c----c----c-----ccc------ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0 00     0             0  0    0    0     000      011112222222222222 224446777


Q ss_pred             HHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 011118          319 TLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVAT  397 (493)
Q Consensus       319 yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~  397 (493)
                      |++ +.|+++...|.+.+...+.++.+.++.+++.+|+|..|....+..   .+..........+.+.......+.+.+.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~  318 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAV---AGVCFYAGMLMAHSPAILLGLQLLNAIY  318 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            887 479999999999998888889999999999999998776544432   1111111111222222211111111111


Q ss_pred             hhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          398 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       398 SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                        .|.-  .-....+.||..|+ +||+.++..++..++. -++..+.+++...
T Consensus       319 --~g~~--~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~  366 (393)
T PRK15011        319 --IGIL--GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI  366 (393)
T ss_pred             --HHHH--HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1111  11223556888886 5999999987777665 7777888887654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.64  E-value=9.6e-13  Score=137.10  Aligned_cols=376  Identities=12%  Similarity=-0.002  Sum_probs=218.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      .....+...++..+.......+.|.+..+ +.-|....+.......+..++.+++.|.+.||++|||++..+.+.-.+. 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~-   93 (406)
T PRK11551         16 TIGLCFLVALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLF-   93 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-
Confidence            34556778888888888899999986554 5668888999999999999999999999999999999988876432222 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                         +.  .. ..    . .++..+...   ..+.|.......+. ..++-.||.    ++   ++..+.++.........
T Consensus        94 ---~~--~~-~~----~-~~~~~~~~~---~~l~G~~~~~~~~~-~~~~~~~~~----~~---~~r~~~~~~~~~~~~~g  151 (406)
T PRK11551         94 ---SL--AT-AQ----A-WDFPSLLVA---RLLTGVGLGGALPN-LIALTSEAV----GP---RLRGTAVSLMYCGVPFG  151 (406)
T ss_pred             ---HH--HH-HH----h-ccHHHHHHH---HHHHHhhHHHHHHH-HHHHHHHHc----CH---HHHHHHHHHHHHHHHHH
Confidence               11  11 11    1 122221111   12334333333333 233344554    22   56788899988888999


Q ss_pred             HhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccc
Q 011118          178 KLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLS  257 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (493)
                      ..++|.+++.+....+.+....+..+...+..    .++..   ..|+..++.+++ +   +   ++             
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~l~~~~~~~~~~-~---~---~~-------------  204 (406)
T PRK11551        152 GALASVIGVLAAGDAAWRHIFYVGGVGPLLLV----PLLMR---WLPESRAFAQAA-G---A---GK-------------  204 (406)
T ss_pred             HHHHHHHHHHHccccCHHHHHHHHHHHHHHHH----HHHHH---hCCCChhHHhcc-C---c---ch-------------
Confidence            99999999888776666554432222222211    11111   234322110000 0   0   00             


Q ss_pred             cccchhHHHHHHHHHHHHhhhccccccccceeeecccchHH-HHHHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHH
Q 011118          258 HDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLP-GVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGI  336 (493)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la-~~alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~  336 (493)
                           +   .+...+...++      .       +.+..+. .+.....+.....+...+..|+.++|+++...|...+.
T Consensus       205 -----~---~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~  263 (406)
T PRK11551        205 -----Q---RAPVLRALFGE------G-------RATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIA  263 (406)
T ss_pred             -----h---hhhhHHHHhhh------h-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHH
Confidence                 0   00000110000      0       0011111 11111111111223345677888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhc
Q 011118          337 SATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVAS-IWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQD  415 (493)
Q Consensus       337 ~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~-~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe  415 (493)
                      ..++++.|.++.+++.+|+|..|.-......    ...+... ...+ ......   ...++..++.-........+.||
T Consensus       264 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~  335 (406)
T PRK11551        264 FNIGGALGSLLIGALMDRLRPRRVVLLIYAG----ILASLAALAAAP-SFAGML---LAGFAAGLFVVGGQSVLYALAPL  335 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHhcC-cHHHHH---HHHHHHHHHHHhHHHHHHHHHHH
Confidence            9999999999999999999977765543321    1111111 1122 111111   11122222222345566778999


Q ss_pred             cCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 011118          416 LVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTF  473 (493)
Q Consensus       416 ~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~  473 (493)
                      .+|+++||++.|+.++..++. .++..+.+.+................+...+..+...
T Consensus       336 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        336 FYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888 7888888888876555555555555555544444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.64  E-value=8.6e-13  Score=137.92  Aligned_cols=359  Identities=13%  Similarity=0.118  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHH
Q 011118           21 YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVA  100 (493)
Q Consensus        21 ~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s  100 (493)
                      .+..+++++..+..+..-..|.+ .+-++-|....+.......+...+..++.|.+.||++|||++..+.+.-.+.    
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~----   91 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAV-VEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT----   91 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH----
Confidence            35566667777888888888874 4556667777777777888888999999999999999999988776332222    


Q ss_pred             HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhh
Q 011118          101 GVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLL  180 (493)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~  180 (493)
                      +..   ....     .++..+..   ...+.|+......+..... -.|+.    ++   ++..+.++.+...-.....+
T Consensus        92 ~~~---~~~~-----~~~~~l~~---~~~l~G~~~~~~~~~~~~~-i~~~~----~~---~~~~~~~~~~~~~~~~~~~~  152 (406)
T PRK15402         92 CLA---ILLA-----QSIEQFTL---LRFLQGIGLCFIGAVGYAA-IQESF----EE---ADAIKITALMANVALLAPLL  152 (406)
T ss_pred             HHH---HHHH-----ccHHHHHH---HHHHHHhHhhhHHHHHHHH-HHHHh----Ch---hHHHHHHHHHHHHHHHHHHH
Confidence            111   1110     12212111   1123343333333332333 23454    22   45667788888888888899


Q ss_pred             hhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccccccc
Q 011118          181 APAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDE  260 (493)
Q Consensus       181 gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (493)
                      ||.+++.+.+..+.+.+..+..+.-.++..    ..   +...|+-.++   +         ++                
T Consensus       153 g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~---~---------~~----------------  197 (406)
T PRK15402        153 GPLVGAALIHVLPWRGMFVLFAALAALSFF----GL---WRAMPETAGR---V---------GE----------------  197 (406)
T ss_pred             HHHHHHHHHHccCccHHHHHHHHHHHHHHH----HH---HHhCCCCCcc---c---------cc----------------
Confidence            999999999887877666444444333332    11   1123431100   0         00                


Q ss_pred             chhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHH-HHHHHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHH
Q 011118          261 NNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLE-WEGIPAYIIGIARGISA  338 (493)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~a  338 (493)
                      +...       ++         ..++++..+++|.++...... +.++....+....+.|+. ..|+++.+.|.......
T Consensus       198 ~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~  261 (406)
T PRK15402        198 KLSL-------KE---------LGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVF  261 (406)
T ss_pred             cccH-------HH---------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHH
Confidence            0000       00         123344456677655443333 332333445556677776 48999999999888888


Q ss_pred             HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccC
Q 011118          339 TIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLV  417 (493)
Q Consensus       339 v~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~v  417 (493)
                      ++.+.|.++.+++.+|+|..|.-..+...+.+.+....... ..+.+   ...++.+.++-.+|.-..........+. .
T Consensus       262 ~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~  337 (406)
T PRK15402        262 GALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHA---YLWLTAGLSLYAFGIGLANAGLYRLTLF-S  337 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccccc---HHHHHHHHHHHHHHHHHHhhhHHHHHhh-h
Confidence            88899999999999999987765555432211111111111 11111   1112233333333433334444444443 3


Q ss_pred             CCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHH
Q 011118          418 PESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLIL  458 (493)
Q Consensus       418 p~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~  458 (493)
                      ++++||++++..+..+.+. .++..+.+.+....+.......
T Consensus       338 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~  379 (406)
T PRK15402        338 SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLF  379 (406)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHH
Confidence            5589999999999999888 8888999998887776665554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.63  E-value=2.3e-12  Score=134.03  Aligned_cols=350  Identities=15%  Similarity=0.148  Sum_probs=202.1

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHH
Q 011118           16 SFLTTYLYVAHFLARWGARMWEFSVGLY--MISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQ   93 (493)
Q Consensus        16 ~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~--lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q   93 (493)
                      .|+++.++..-+++..+.-...+..|.+  +..-++-|....+.......++.++..++.|.+.||++|||++..+.+.-
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            3477777777777766665555444432  33445667778888888899999999999999999999999988775433


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhH
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRI  173 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrri  173 (493)
                      .+..    .  .. ..    . .+...+...   ..+.|.......+... .+-+|+.    ++   +++.+.|+...-.
T Consensus        84 ~~~~----~--~~-~~----~-~~~~~l~~~---~~~~g~~~~~~~~~~~-~~~~~~~----~~---~~~~~~~~~~~~~  140 (394)
T PRK11652         84 ILGT----L--VA-LF----A-HSLTVLIAA---SAIQGLGTGVGGVMAR-TLPRDLY----EG---TQLRHANSLLNMG  140 (394)
T ss_pred             HHHH----H--HH-HH----H-ccHHHHHHH---HHHHHhhhhHHHHHHH-HHHHHhc----CH---HHHHHHHHHHHHH
Confidence            2221    1  11 11    1 122222111   1222333322232222 2234544    22   5688899998888


Q ss_pred             HHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccc
Q 011118          174 DLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERE  253 (493)
Q Consensus       174 Dl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (493)
                      -....++||.++|.+.+..|.+....+..++..+..+.   .    +...||..++             ++         
T Consensus       141 ~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~---~----~~~~~~~~~~-------------~~---------  191 (394)
T PRK11652        141 ILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS---M----ARWMPETRPA-------------DA---------  191 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---H----HHhCCccCcc-------------cc---------
Confidence            88899999999999988778776654433333322111   1    1123431100             00         


Q ss_pred             cccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHHH
Q 011118          254 SLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIG  331 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~iG  331 (493)
                             ...   +               .+++++..+++|.++..+...+.++.. ..+......|..+ .|+++...|
T Consensus       192 -------~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  246 (394)
T PRK11652        192 -------RRT---R---------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVS  246 (394)
T ss_pred             -------chh---H---------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHH
Confidence                   000   0               012233344566665544444333322 2344445557775 899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118          332 IARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN--SLVAAYMLMVGVATSRLGLWMFDLSV  409 (493)
Q Consensus       332 ~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~--~~~s~~~l~~gi~~SR~GLw~fDl~~  409 (493)
                      ++.....++.++|+++.+++.+|.+  |....+..    +...+....+.+.  ...+...+..+.++.-+|.-......
T Consensus       247 ~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        247 ILFILPIPAAFFGAWFAGRPNKRFS--TLMWQSVI----CCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998  33333322    1111111111110  00111222333344444444566777


Q ss_pred             hhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          410 IQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       410 ~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      +...|+..|+ ++|+.+++.++.+++. -++..+.+.+...
T Consensus       321 ~~~~~~~~~~-~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        321 TSGAMEPFPY-LAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            8888888874 7899999998887766 6666666666433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.63  E-value=2.2e-13  Score=139.60  Aligned_cols=325  Identities=13%  Similarity=0.029  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc-----chhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011118           35 MWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL-----TYVKV-LQIWLVTQNLSFIVAGVSVITLL  108 (493)
Q Consensus        35 ~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~-----~R~~v-~~~~~~~q~~~v~~s~~~~~~~l  108 (493)
                      +..+++|.++.+. .-|....+.+.+. .++..+ .+..|.++||+     +|||. +..+.+.-.++    ..  .+..
T Consensus         6 ~~~~~~~~~~~~~-g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~----~~--~l~~   76 (356)
T TIGR00901         6 LVGNTLPYWLRSK-NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSL----LL--ILSF   76 (356)
T ss_pred             hHHhHHHHHHHHc-CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHH----HH--HHHc
Confidence            3457788877765 5577788888765 677765 99999999998     47675 45444322222    11  1111


Q ss_pred             hhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHH
Q 011118          109 FFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFI  188 (493)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l  188 (493)
                      .++  ...-+..+    .+..+.+......+++.+..     ++.++++   +++.+.|+....--....+++|.+++.+
T Consensus        77 ~~~--~~~l~~l~----~~~~~~~~~~~~~~~~~~a~-----~~~~~~~---~~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        77 LVP--STDLPLLA----GLAFLIAFFSATQDIALDAW-----RLEILSD---EELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             CCc--chhHHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHhCCH---hhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110  11111122    11122334444445554433     3344433   5688999998888999999999999999


Q ss_pred             HHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccccccc
Q 011118          189 ISFVS--------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDE  260 (493)
Q Consensus       189 ~~~~s--------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (493)
                      .+..|        .+...    .++++..++-.+. ...  ..||..++             ++.               
T Consensus       143 ~~~~g~~~~~~~~wr~~f----~i~ai~~l~~~~~-~~~--~~~e~~~~-------------~~~---------------  187 (356)
T TIGR00901       143 ASPEFANTGLITLWGYIF----FWTALLILPGLLV-TLF--LAKEPQED-------------ASV---------------  187 (356)
T ss_pred             hhhcccccccccccHHHH----HHHHHHHHHHHHH-HHH--hccCCCcc-------------ccc---------------
Confidence            98877        55555    3344444442222 211  12321100             000               


Q ss_pred             chhHHHHHHHHHHHHhhhccccccccceeeecccc---hHHHHHHHHHH-HHhhhhhhHHHHHHHHcCCCchHHHHHHHH
Q 011118          261 NNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEV---VLPGVSLALLF-FTVLSFGTLMTATLEWEGIPAYIIGIARGI  336 (493)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v---~la~~alalLy-~tVL~f~~l~~~yl~~~gls~~~iG~~r~~  336 (493)
                      ....  .    ++         .+++++..+++|.   ++..+...+++ +..-.....++.|+.+.|+++.++|.+.++
T Consensus       188 ~~~~--~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~  252 (356)
T TIGR00901       188 PKPL--T----QA---------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKI  252 (356)
T ss_pred             chhH--H----HH---------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence            0000  0    00         1223344455554   33333333444 333345667888988899999999988876


Q ss_pred             -HHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchH-------HHHHHHHHHHHhhhchhhhhhhh
Q 011118          337 -SATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSL-------VAAYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       337 -~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~-------~s~~~l~~gi~~SR~GLw~fDl~  408 (493)
                       +.+.+++|.++.+++.+|+|..|...++...+.+..   ....+.....       .....+....++..++.-.+...
T Consensus       253 ~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  329 (356)
T TIGR00901       253 NGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN---AGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVA  329 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence             457889999999999999998887665554322211   1111211000       12233344455556666778999


Q ss_pred             hhhhhhccCCCCcchhHHHHHHHHHHh
Q 011118          409 VIQQMQDLVPESDRCVVGGVQNSLQST  435 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv~~sl~~~  435 (493)
                      ...++||.+|+++||++.|..++++++
T Consensus       330 ~~~~~~~~~p~~~~g~~~g~~~~~~~~  356 (356)
T TIGR00901       330 FVAFLSKLSNPKFGATQMALLSSLSAL  356 (356)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence            999999999999999999999988763

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.62  E-value=8.4e-13  Score=135.99  Aligned_cols=375  Identities=11%  Similarity=0.069  Sum_probs=213.1

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      +.+...+.+++++..+.-+..+..|.+. .-++-|....+.......+...+.+++.|.+.||++||+++..+.+...+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   90 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVA-GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5678889999999999999999999854 455667788898888899999999999999999999999988775333222


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.+  ....      .++..+   ++...+.|+......+..... -.||.    ++   ++..+.++.......+
T Consensus        91 ----~~~--~~~~------~~~~~l---~~~~~l~G~~~~~~~~~~~~~-i~~~~----~~---~~~~~~~~~~~~~~~~  147 (405)
T TIGR00891        91 ----TLA--CGFA------PGYITM---FIARLVIGIGMGGEYGSSAAY-VIESW----PK---HLRNKASGLLISGYAV  147 (405)
T ss_pred             ----HHH--HHHh------ccHHHH---HHHHHHHHhhhhhhhHHHHHH-HHHhC----Ch---hhhhHHHHHHHHHHHH
Confidence                111  1111      112111   112223344444443332222 23554    22   5678899999999999


Q ss_pred             HHhhhhHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          177 CKLLAPAITGFIISFVS--LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s--~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      +.++||.+++.+....+  .+....    ...+..+.-.+.    +.+.||.++.+++++++  + +..+  + .+    
T Consensus       148 g~~~~~~l~~~l~~~~~~~w~~~f~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~-~~~~--~-~~----  209 (405)
T TIGR00891       148 GAVVAAQVYSLVVPVWGDGWRALFF----ISILPIIFALWL----RKNIPEAEDWKEKHAGK--A-LVRT--M-VD----  209 (405)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHH----HHHHHHHHHHHH----HHhCCCChhHHHHhhhh--h-hhhh--H-HH----
Confidence            99999999999988765  443331    222222222111    22455532211111000  0 0000  0 00    


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhcccccccccee-eecc-cchHHHHHHH-HHHHHhhhhhhHHHHHHH-HcCCCchHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQV-YLKQ-EVVLPGVSLA-LLFFTVLSFGTLMTATLE-WEGIPAYII  330 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-y~~q-~v~la~~ala-lLy~tVL~f~~l~~~yl~-~~gls~~~i  330 (493)
                           +....  + ...+...++     ....++. ..+. +.+....... +.++...+....++.|++ +.|+++.+.
T Consensus       210 -----~~~~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  276 (405)
T TIGR00891       210 -----ILYGG--E-HRIANIVMT-----LAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTV  276 (405)
T ss_pred             -----HHhcc--c-hhhhhhhhh-----hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHH
Confidence                 00000  0 000000000     0000000 0111 1121111111 222222345566788887 479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHHHHHhhhchhhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVA--AYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s--~~~l~~gi~~SR~GLw~fDl~  408 (493)
                      |.+.+...+++++|+++.+++.+|+|..|.-..+...   +...+......+.+.+.  ...++.+...  .+.+   ..
T Consensus       277 ~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~  348 (405)
T TIGR00891       277 ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA---GQLLIIPVFAIGANVAVLGLGLFFQQMLV--QGIW---GI  348 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH---HHHHHHHHHHhCCchHHHHHHHHHHHHHH--ccch---hh
Confidence            9999999999999999999999999987765544431   11111111111222111  1112222211  1222   23


Q ss_pred             hhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCch
Q 011118          409 VIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFW  454 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~  454 (493)
                      ...++||.+|+++||+++|+.+++.++. .++..+.+.+...-+.+.
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~  395 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG  395 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4467899999999999999999988877 888888888887655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.62  E-value=2.7e-12  Score=133.65  Aligned_cols=350  Identities=12%  Similarity=0.042  Sum_probs=201.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHH
Q 011118           26 HFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVI  105 (493)
Q Consensus        26 ~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~  105 (493)
                      .++-.-++++-.-..|.+ .+-++-|....+.......+...+++++.|.+.||++|||++..+.+.-    ++++..  
T Consensus        18 ~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~----~~~~~~--   90 (390)
T PRK03545         18 AFIFNTTEFVPVGLLSDI-AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF----IASHVL--   90 (390)
T ss_pred             HHHHHhHHHHHHcchHHH-HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHHHHH--
Confidence            333334444433345664 4556778888888888888888899999999999999999998875322    222221  


Q ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHH
Q 011118          106 TLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAIT  185 (493)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~  185 (493)
                      . ..    . .++..+.+.   -.+.|.......+.....+ -||.    ++   ++..+.++.+..-...+.++||.++
T Consensus        91 ~-~~----~-~~~~~l~~~---r~~~G~~~~~~~~~~~~~i-~~~~----~~---~~r~~~~g~~~~~~~~g~~ig~~l~  153 (390)
T PRK03545         91 S-AL----A-WNFTVLLIS---RIGIAFAHAIFWSITASLA-IRVA----PA---GKKAQALSLLATGTALAMVLGLPLG  153 (390)
T ss_pred             H-HH----h-ccHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHhC----Ch---hhhhhHHHHHHHHHHHHHHHHhhHH
Confidence            1 11    1 111111111   1223433333333322222 2343    33   5678999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHH
Q 011118          186 GFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAEL  265 (493)
Q Consensus       186 G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (493)
                      +.+.+..|.+.......+...+..    .+..   ...|+.++            + ++                  .+ 
T Consensus       154 ~~l~~~~gw~~~f~~~~~~~~l~~----~~~~---~~~~~~~~------------~-~~------------------~~-  194 (390)
T PRK03545        154 RVIGQYLGWRTTFLAIGGGALITL----LLLI---KLLPLLPS------------E-HS------------------GS-  194 (390)
T ss_pred             HHHHHHhcHHHHHHHHHHHHHHHH----HHHH---HhCCCCCC------------C-Cc------------------ch-
Confidence            999998888776644333332222    1111   12332110            0 00                  00 


Q ss_pred             HHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHH
Q 011118          266 AEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIA  343 (493)
Q Consensus       266 ~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~Gll  343 (493)
                       .                 ++++..+++|.++..+....++ +...+..+.+..|+.+ .|+++...|.+.+..+++++.
T Consensus       195 -~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~  256 (390)
T PRK03545        195 -L-----------------KSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGII  256 (390)
T ss_pred             -H-----------------HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence             0                 0112234556555444443333 2222333455667775 699999999999999999999


Q ss_pred             HHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcc
Q 011118          344 ATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDR  422 (493)
Q Consensus       344 gT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~r  422 (493)
                      |+++.+++.+|.|.. ...++..    +...+.... ....+.+   .+....++..++...+.......+|+..| ++|
T Consensus       257 g~~~~g~l~dr~~~~-~~~~~~~----~~~~~~~~l~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~  327 (390)
T PRK03545        257 GSVLFSRLGNRHPSG-FLLIAIA----LLLVCLLLLLPAANSEW---HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DAT  327 (390)
T ss_pred             HHHHHHHHhhccchh-HHHHHHH----HHHHHHHHHHHHhchHH---HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcH
Confidence            999999999999843 3222221    111221111 1111211   11222223333444455666677887766 588


Q ss_pred             hhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 011118          423 CVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVT  465 (493)
Q Consensus       423 G~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~  465 (493)
                      |++.|..+++.++- .++..+.+.+...-+............+.
T Consensus       328 ~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~  371 (390)
T PRK03545        328 DVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALA  371 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            99999988887655 88999999888665544444444444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.62  E-value=3.2e-12  Score=134.03  Aligned_cols=333  Identities=12%  Similarity=0.050  Sum_probs=197.5

Q ss_pred             HHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 011118           45 ISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL  124 (493)
Q Consensus        45 v~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l  124 (493)
                      .+-++-|...++....+..+...+.+++.|.+.||.+|||++..+.+...+.    +.+  . ..    . .+...+   
T Consensus        47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~----~~~--~-~~----~-~~~~~l---  111 (394)
T PRK10213         47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS----CLL--V-SF----A-NSFSLL---  111 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH----HHH--H-HH----H-ChHHHH---
Confidence            3445667777788777888889999999999999999999999998665443    111  1 11    1 111111   


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHH
Q 011118          125 VILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIW  204 (493)
Q Consensus       125 ~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~  204 (493)
                      ++.-.+.|.......+.... +-.||+    ++   ++..+.|+.+...-.++.++||.+++.+.+..|.+....+....
T Consensus       112 ~~~r~l~G~~~g~~~~~~~~-~i~~~~----~~---~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l  183 (394)
T PRK10213        112 LIGRACLGLALGGFWAMSAS-LTMRLV----PP---RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM  183 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHHH-HHHHHc----CH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            11122334444444433232 335665    33   56889999999999999999999999999988887766433322


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhcccccc
Q 011118          205 TTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCV  284 (493)
Q Consensus       205 n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  284 (493)
                      ..+       ++..++...|+.++            +.++                  .   .                 
T Consensus       184 ~~~-------~~l~~~~~~p~~~~------------~~~~------------------~---~-----------------  206 (394)
T PRK10213        184 GVL-------CIFWIIKSLPSLPG------------EPSH------------------Q---K-----------------  206 (394)
T ss_pred             HHH-------HHHHHHHHCCCCCc------------cccc------------------c---h-----------------
Confidence            222       11122233453210            0000                  0   0                 


Q ss_pred             ccceeeecccchHHHHHHHHH-HHHhhhhhh-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH
Q 011118          285 GAWQVYLKQEVVLPGVSLALL-FFTVLSFGT-LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL  362 (493)
Q Consensus       285 ~g~~~y~~q~v~la~~alalL-y~tVL~f~~-l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~  362 (493)
                      +.++..+++|.++..+...++ +....++.. +.+.|.++.|+++...|.+....+++++.|.++.+++.+|.+ .+...
T Consensus       207 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~  285 (394)
T PRK10213        207 QNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALA  285 (394)
T ss_pred             hHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHH
Confidence            001112356655554433322 222223322 235566678999999999999999999999999999999943 23222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHH
Q 011118          363 WSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAY  441 (493)
Q Consensus       363 ~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~  441 (493)
                      +....  .....+++..+.+ +.+   .+....++..+|.-.+....++.+|+.+| ++++++++...+..++. .++..
T Consensus       286 ~~~~~--~~~~~~~l~~~~~-~~~---~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~  358 (394)
T PRK10213        286 GAPLV--LAVSALVLTLWGS-DKI---VATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAA  358 (394)
T ss_pred             HHHHH--HHHHHHHHHHHhh-hHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence            22210  0111111212222 111   12223333445556778888889999998 45788888887777766 89999


Q ss_pred             HHHHhccCCCCchHHHHHHHHHHH
Q 011118          442 TMGIIISNPQDFWKLILISVIVVT  465 (493)
Q Consensus       442 ~~~ii~~~p~~F~~l~~~S~~~V~  465 (493)
                      +.|.+...-+.....+...+..+.
T Consensus       359 l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        359 IGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHhccChhhHHHHHHHHHHH
Confidence            999998765444444444333333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.62  E-value=1.5e-12  Score=133.93  Aligned_cols=371  Identities=16%  Similarity=0.154  Sum_probs=199.1

Q ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011118           30 RWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLF  109 (493)
Q Consensus        30 ~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~  109 (493)
                      .++..+|.-..|.+..+ ++-|....+.......+...+.+++.|.+.||++||+++..+.+...+..    ..  . ..
T Consensus         4 ~~~~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~----~~--~-~~   75 (377)
T PRK11102          4 PLAIDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAA----VA--C-AL   75 (377)
T ss_pred             chHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHH----HH--H-HH
Confidence            45667788888887665 56677888888888889999999999999999999999887764444431    11  1 11


Q ss_pred             hcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHH
Q 011118          110 FSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFII  189 (493)
Q Consensus       110 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~  189 (493)
                      .     .++..+...   ..+.|.......+... +.-.||.    ++   ++..+.++........+.+++|.++|.+.
T Consensus        76 ~-----~~~~~~~~~---~~l~g~~~~~~~~~~~-~~~~~~~----~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         76 A-----QTIDQLIYM---RFLHGLAAAAASVVIN-ALMRDMF----PK---EEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             H-----ccHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHhc----CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0     111111111   1223333333333322 2233443    32   56788888888888999999999999998


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHH
Q 011118          190 SFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKR  269 (493)
Q Consensus       190 ~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (493)
                      +..+.+...........+..+.-    ..   ..|+..++  ++     +   ++     .          + ... .  
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~--~~-----~---~~-----~----------~-~~~-~--  183 (377)
T PRK11102        140 VWFSWHAIFWVLALAAILAAALV----FF---FIPETLPK--ER-----R---QP-----F----------H-LRT-T--  183 (377)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHH----HH---hCCccCcc--cc-----c---CC-----C----------C-hHH-H--
Confidence            87777665543333333332221    11   22321100  00     0   00     0          0 000 0  


Q ss_pred             HHHHHHhhhccccccccceeeecccchHHHHHHHHHHHH-hhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHH
Q 011118          270 WRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT-VLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATIL  347 (493)
Q Consensus       270 ~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~t-VL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~  347 (493)
                                    .+.++..+++|.++.......+++. ...+-.....|.. ..|+++...|.+.++.+++++.+.++
T Consensus       184 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~  249 (377)
T PRK11102        184 --------------IRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTII  249 (377)
T ss_pred             --------------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                          1112223445544433333333222 1222222233444 57999999999999999999999999


Q ss_pred             HHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHH
Q 011118          348 YPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGG  427 (493)
Q Consensus       348 ~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~g  427 (493)
                      .+++.+|+|..|.-.++...+.++..........+...+.   +..+....-.+.-........+.||..| +++|++++
T Consensus       250 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~  325 (377)
T PRK11102        250 NSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWA---LVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASS  325 (377)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHH
Confidence            9999999998877666655332221111111111111111   1111111111122223334456777766 78999999


Q ss_pred             HHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011118          428 VQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRK  480 (493)
Q Consensus       428 v~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rg  480 (493)
                      ..++.....  +..+..++.....+..+......+.......++..+.+|.++
T Consensus       326 ~~~~~~~~~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (377)
T PRK11102        326 LAGTLRFGI--GAIVGALLSLAPFTSAWPMVWSMAFCSILSILFYLYASRPKK  376 (377)
T ss_pred             HHHHHHHHH--HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            987776544  333444433333333333333333333333444445454443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=2.7e-12  Score=128.59  Aligned_cols=338  Identities=17%  Similarity=0.161  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHH
Q 011118           20 TYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIV   99 (493)
Q Consensus        20 ~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~   99 (493)
                      ..+..+.++..+++.++....|.+..+. +.+....+.......+..++.+++.|.+.||.+|||.+..+.+...+....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDL-GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            4567889999999999999999987664 667788899999999999999999999999999999888887655554211


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHh
Q 011118          100 AGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKL  179 (493)
Q Consensus       100 s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l  179 (493)
                            . ...     .++..+.   +...+.|.......+. ..+.-.||.    ++   ++..+.++........+..
T Consensus        81 ------~-~~~-----~~~~~~~---~~~~l~g~~~~~~~~~-~~~~~~~~~----~~---~~~~~~~~~~~~~~~~g~~  137 (352)
T cd06174          81 ------L-AFA-----SSLWLLL---VGRFLLGLGGGALYPA-AAALIAEWF----PP---KERGRALGLFSAGFGLGAL  137 (352)
T ss_pred             ------H-HHh-----ccHHHHH---HHHHHHHcccccccHh-HHHHHHHhC----Cc---cchhhhhhHHHHHHHHHHH
Confidence                  1 110     1221211   1122334444444444 333344454    33   4678999999999999999


Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccc
Q 011118          180 LAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHD  259 (493)
Q Consensus       180 ~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (493)
                      +||.+++.+.+..+.+....+......++.+.-..+.                                           
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  174 (352)
T cd06174         138 LGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence            9999999999877766555433333333322211110                                           


Q ss_pred             cchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHHc-CCCchHHHHHHHHH
Q 011118          260 ENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEWE-GIPAYIIGIARGIS  337 (493)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~~-gls~~~iG~~r~~~  337 (493)
                                                        |.++.......++ +..-.+...+..|.++. |.++...|.+.+..
T Consensus       175 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (352)
T cd06174         175 ----------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLF  220 (352)
T ss_pred             ----------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                                              1111222222222 22334556677787765 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchhh-hhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhcc
Q 011118          338 ATIGIAATILYPILQSRISTLR-TGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDL  416 (493)
Q Consensus       338 av~GllgT~~~~~l~~riGl~r-~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~  416 (493)
                      .++++.+.++.+++.+|+|..+ ...++...   +....+...+.+.    ...+..+..+..++.-........+.||.
T Consensus       221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  293 (352)
T cd06174         221 GLGGILGALLGGLLSDRLGRRRLLLLIGLLL---AALGLLLLALAPS----LALLLVALLLLGFGLGFAFPALLTLASEL  293 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHhcc----HHHHHHHHHHHHHHHhccchhHHHHHHhh
Confidence            9999999999999999999777 55544431   1111122122221    12223334444455566688999999999


Q ss_pred             CCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 011118          417 VPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVT  465 (493)
Q Consensus       417 vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~  465 (493)
                      +|+++||+..|+.+..++.. -++..+.+.+.+..+......+.+...+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence            99999999999999999998 77777777877655544444444444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.59  E-value=4.4e-12  Score=132.83  Aligned_cols=383  Identities=11%  Similarity=0.027  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc-----chh-HHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL-----TYV-KVLQIWLVT   92 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~-----~R~-~v~~~~~~~   92 (493)
                      +..||..|.+   .-.....++|.++-+. +-|.-..+....+.. + .++.+..|.++||+     +|| +.+..+++.
T Consensus         4 ~~~l~~~~~~---~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~-~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~   77 (402)
T PRK11902          4 MLLLGFASGL---PLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQ-A-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVG   77 (402)
T ss_pred             HHHHHHHHhh---hHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH-H-HHHHHHHHHHHHcccccCCCcchhHHHHHHHH
Confidence            5566666654   4567788999999876 668888888866554 3 68899999999999     454 577777644


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHh
Q 011118           93 QNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRR  172 (493)
Q Consensus        93 q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrr  172 (493)
                      -.++..    .  +.+.+   ...+...+   +++..+.+......+++.+.. --||+    ++   ++..+.|+....
T Consensus        78 ~~l~~~----~--l~~~~---~~~~~~~l---~~~~~~~~~~~~~~~~~~~al-~~~~~----~~---~~r~~~~~~~~~  137 (402)
T PRK11902         78 LAASIA----A--MAFCP---PHAALWPL---AGLAVLVAFLSASQDIVFDAY-STDVL----HP---EERGAGAAVKVL  137 (402)
T ss_pred             HHHHHH----H--HHhcC---ccchHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHhc----Ch---hhhhHHHHHHHH
Confidence            433311    1  11111   11122111   111122344445455553333 23343    33   567899999887


Q ss_pred             HHHHHHhhhhHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccc
Q 011118          173 IDLTCKLLAPAITGFIISF-VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRE  251 (493)
Q Consensus       173 iDl~~~l~gP~~~G~l~~~-~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
                      --..+.++||.+++.+.+. .|.+....+.++.-.+..+    .  ..  ..||...+   +       + ++       
T Consensus       138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l----~--~~--~~~e~~~~---~-------~-~~-------  191 (402)
T PRK11902        138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL----T--TL--WAPEPEVP---A-------R-PP-------  191 (402)
T ss_pred             HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH----H--HH--hcCCCccc---c-------c-cc-------
Confidence            7888999999999999885 4776665444443332222    1  11  23432110   0       0 00       


Q ss_pred             cccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHH-hhhhhhHHHHHHH-HcCCCchH
Q 011118          252 RESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT-VLSFGTLMTATLE-WEGIPAYI  329 (493)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~t-VL~f~~l~~~yl~-~~gls~~~  329 (493)
                               . ..  .    ++         ..++++..++||.++..+...+++.. ...+....+.|+. +.|+++..
T Consensus       192 ---------~-~~--~----~~---------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~  246 (402)
T PRK11902        192 ---------R-SL--G----EA---------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGE  246 (402)
T ss_pred             ---------c-hh--H----HH---------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH
Confidence                     0 00  0    00         13455667888988877776666532 2222233444555 58999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHhhhchhhhhhh
Q 011118          330 IGIARGI-SATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAY-MLMVGVATSRLGLWMFDL  407 (493)
Q Consensus       330 iG~~r~~-~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~-~l~~gi~~SR~GLw~fDl  407 (493)
                      +|.+.+. +.++++.|+++.+++.+|+|..|...++...+.++........+.+.+.+... ..+...+...++......
T Consensus       247 ~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  326 (402)
T PRK11902        247 VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVA  326 (402)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999865 56678999999999999999888765555433222211111112222222111 111111344566667788


Q ss_pred             hhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q 011118          408 SVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHFD  486 (493)
Q Consensus       408 ~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rghl~h~~  486 (493)
                      ....+.|+..|.++++..+++. ++...  .+..+.|.+...   +++-.....+++++...+..  .+|.++|+-|.|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~  397 (402)
T PRK11902        327 LLMALCNRSFSATQYALLSALA-SVGRV--YVGPTSGYLVEA---YGWPGFYLMTVVIALPGLAL--LWLMRGTIGRYE  397 (402)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHH-HHHHH--HHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHH--HHHHhhhccccc
Confidence            8999999999988776644443 33332  234456666543   44443333333332222111  244556655554

>TIGR00897 2A0118 polyol permease family

Probab=99.58  E-value=2.6e-12  Score=134.69  Aligned_cols=368  Identities=12%  Similarity=0.058  Sum_probs=209.2

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHH
Q 011118           16 SFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNL   95 (493)
Q Consensus        16 ~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~   95 (493)
                      +|+....|.+.++..+++-+.....|.++.+ ++-|....+.....-.+...+++++.|++.||++|||++..+.+.-.+
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~   90 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV   90 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            4688999999999999999877777777754 566778888888888899999999999999999999999888754433


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      .    ..+ .....   ....++..+..+.   .+.|.......+... +...||+    ++   ++..+.|+.....-.
T Consensus        91 ~----~~~-~~~~~---~~~~~~~~l~~~~---~i~G~g~~~~~~~~~-~~~~~~~----~~---~~~g~~~g~~~~~~~  151 (402)
T TIGR00897        91 G----HAA-FIVFG---LGHANYPLILLFY---GIRGLGYPLFAYSFL-VWVVYNT----KQ---DNLSSAVGWFWAVYS  151 (402)
T ss_pred             H----HHH-HHHHh---ccCccHHHHHHHH---HHHHcchHHHHhHHH-HHHHHhC----CH---HHHHHHHHHHHHHHH
Confidence            3    111 11011   0111222221222   122222222222222 2223443    22   567889998888777


Q ss_pred             HHH-hhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          176 TCK-LLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       176 ~~~-l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      .+. +.||.++|.+.+..|.....+....   .....  ..+....  .++..+          |++.++     +    
T Consensus       152 ~g~~~~g~~~~~~l~~~~g~~~~~~~~~~---~~~~~--~~~~~~~--~~~~~~----------~~~~~~-----~----  205 (402)
T TIGR00897       152 IGIGVFGSYYSSYAIPAFGEMNTLWSALA---FVLTG--GVIALFS--NKDIFT----------PQHMQT-----R----  205 (402)
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHH---HHHHH--HHHHHhc--cCCCCC----------cccccC-----C----
Confidence            775 6899999998877664322211111   11111  1111111  111000          000000     0    


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHHcCCCchHHHHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEWEGIPAYIIGIA  333 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~~gls~~~iG~~  333 (493)
                           +.  .  +         +     ..++++..+++|.++......... ....++...++.|+++.|+++...+.+
T Consensus       206 -----~~--~--~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~  262 (402)
T TIGR00897       206 -----EK--F--S---------E-----LGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQI  262 (402)
T ss_pred             -----cc--h--h---------h-----HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHH
Confidence                 00  0  0         0     122344456677666544433332 333455667788988899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhHH-HHHHHHHHHHHHHHHHhh----cchHHH--HHHHHHHHHhhhchhhhhh
Q 011118          334 RGISATIGIAATILYPILQSRISTLRTGLW-SIWSQWFCLLICVASIWI----HNSLVA--AYMLMVGVATSRLGLWMFD  406 (493)
Q Consensus       334 r~~~av~GllgT~~~~~l~~riGl~r~g~~-~~~~q~~~L~~~v~~~~~----~~~~~s--~~~l~~gi~~SR~GLw~fD  406 (493)
                      .+...++++.|++..+++.+|+|..|.-.+ +..   .+...+....+.    ....+.  ...++.|+.     ...+ 
T Consensus       263 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~-----~~~~-  333 (402)
T TIGR00897       263 WGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGV---GCGIFTLALYYIPQHFGHSFAVALIIAIALGIF-----LAGY-  333 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH-----HHHH-
Confidence            999999999999999999999996554321 111   111111111111    111111  222233332     2222 


Q ss_pred             hhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHH
Q 011118          407 LSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVI  462 (493)
Q Consensus       407 l~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~  462 (493)
                      ....+..++. ++++||+..|+.++..++. -++.++.+.+....+-....++.+..
T Consensus       334 ~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       334 VPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             HHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            2334566664 5568999999999888877 67777788877665444443434333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.58  E-value=9.1e-12  Score=127.52  Aligned_cols=344  Identities=13%  Similarity=0.080  Sum_probs=193.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHH-HHHHHHHHHHHHH
Q 011118           23 YVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQI-WLVTQNLSFIVAG  101 (493)
Q Consensus        23 ~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~-~~~~q~~~v~~s~  101 (493)
                      ....++...+..++....|+++.+-++-|....+.......+..++.+|+.|.+.||++|||.+.. +.+.-    ++++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~----~~~~   78 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLA----ALAC   78 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH----HHHH
Confidence            356788889999999999999888788888888888888888899999999999999988876544 32111    1111


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhh
Q 011118          102 VSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA  181 (493)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~g  181 (493)
                      .   +...    . .++..+   ++...+.+.......+. ..++-+||.    ++++ ......|+.++.....+.++|
T Consensus        79 ~---~~~~----~-~~~~~l---~~~~~~~g~~~~~~~p~-~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~g~~ig  141 (375)
T TIGR00899        79 L---LFAW----N-RNYFLL---LVLGVLLSSFASTANPQ-LFALAREHA----DRTG-REAVMFSSVMRAQISLAWVIG  141 (375)
T ss_pred             H---HHHh----c-chHHHH---HHHHHHHHhhhhhhHHH-HHHHHHHHh----hhcc-hhhHHHHHHHHHHHhHHHHHh
Confidence            1   1111    1 122111   11111223233333333 223345554    2211 122233777887788999999


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccc
Q 011118          182 PAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN  261 (493)
Q Consensus       182 P~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (493)
                      |.++|.+.+..|.+....+    +++..++-..+....   .|+.+++   +     +++ ++     +           
T Consensus       142 ~~~~~~l~~~~~~~~~f~~----~~~~~~~~~~~~~~~---~~~~~~~---~-----~~~-~~-----~-----------  189 (375)
T TIGR00899       142 PPLAFWLALGFGFTVMFLT----AALAFVLCGVLVWLF---LPSYPRG---A-----PGA-LT-----R-----------  189 (375)
T ss_pred             hhHHHHHHHhcccHHHHHH----HHHHHHHHHHHHHHh---CCCcccC---c-----ccc-cC-----c-----------
Confidence            9999999988887766533    333222222222222   3432110   0     000 00     0           


Q ss_pred             hhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHH-HHHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHH
Q 011118          262 NAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL-FFTVLSFGTLMTATLE-WEGIPAYIIGIARGISAT  339 (493)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalL-y~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av  339 (493)
                       .   +                   ++..+++|.++..+...++ +...-.+...+..|+. +.|.++...|.+.+....
T Consensus       190 -~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~  246 (375)
T TIGR00899       190 -L---E-------------------VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAG  246 (375)
T ss_pred             -c---h-------------------hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             0   0                   0001233334333332222 2212223445566776 589999999999998888


Q ss_pred             HHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCC
Q 011118          340 IGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPE  419 (493)
Q Consensus       340 ~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~  419 (493)
                      .++.+..+.+++.+|+|..|...++...   +..........+ +.+...   ...++..++.-........+.||..|+
T Consensus       247 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~---~~~~~~g~~~g~~~~~~~~~~~~~~~~  319 (375)
T TIGR00899       247 LEIPFMLLAGYLIKRFGKRRLMLLAALA---GVAFYTGLAADN-SLWALL---MLQLLNAIFIGILAGIGMLYFQDLMPG  319 (375)
T ss_pred             HHHHHHHhHHHHHHHhcchhHHHHHHHH---HHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            8899999999999999977765544331   111111111122 222111   111111222222234555678888876


Q ss_pred             CcchhHHHHHHHHHHhh-HHHHHHHHHhccCC
Q 011118          420 SDRCVVGGVQNSLQSTM-DLMAYTMGIIISNP  450 (493)
Q Consensus       420 ~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p  450 (493)
                       ++|+.+|..++..++. -++..+.+.+...-
T Consensus       320 -~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~  350 (375)
T TIGR00899       320 -RAGAATTLYTNTGRVGWIIAGSVGGILAERW  350 (375)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             5679999988887766 66777777776543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11043 putative transporter; Provisional

Probab=99.58  E-value=2.3e-11  Score=126.82  Aligned_cols=349  Identities=15%  Similarity=0.084  Sum_probs=197.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH--HHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLY--MISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~--lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      .+.+.....++..+.-.++...|.+  +.+-+.-|....+....+-.++..+.+++.|.+.||++||+++..+.+.-.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   84 (401)
T PRK11043          5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG   84 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence            3344455555666666777777765  44555668888899998899999999999999999999999987776433222


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.+  . ..    . .++..+....   .+.|.......+. ..+...||.    ++   ++..+.++....+-..
T Consensus        85 ----~~~--~-~~----~-~~~~~l~~~~---~l~G~~~~~~~~~-~~~~~~~~~----~~---~~~~~~~~~~~~~~~~  141 (401)
T PRK11043         85 ----SLG--M-LW----V-ESAAQLLVLR---FVQAVGVCSAAVI-WQALVIDRY----PA---QKANRVFATIMPLVAL  141 (401)
T ss_pred             ----HHH--H-HH----h-cCHHHHHHHH---HHHHhhhHHHHHH-HHHHHHHhc----Cc---HHHHHHHHHHHHHHHH
Confidence                111  1 11    0 1221211111   1222222222222 233445665    22   4567777788788888


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      +..+||.++|.+.+..|.+.......+...+..+.    ..    ..|+..+   ++         ++            
T Consensus       142 ~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~----~~----~~~~~~~---~~---------~~------------  189 (401)
T PRK11043        142 SPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP----TL----RLKPSKK---AR---------KQ------------  189 (401)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH----HH----HcCCCCC---cc---------cc------------
Confidence            99999999999998888776655444444443322    11    1221000   00         00            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHH-HHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSL-ALLFFTVLSFGTLMTATLEWEGIPAYIIGIARG  335 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~al-alLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~  335 (493)
                          +  +  +                +++++..+++|.++..+.. .........+......|+++.|+++...|....
T Consensus       190 ----~--~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~  245 (401)
T PRK11043        190 ----S--Q--D----------------ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYV  245 (401)
T ss_pred             ----c--h--H----------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHH
Confidence                0  0  0                0111122334433322211 111111223444556677778999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhh
Q 011118          336 ISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQ  414 (493)
Q Consensus       336 ~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Q  414 (493)
                      ..+++.+.|.++.+++.+|+|..|.-.+......++.......... +...+...   .+....-++....-........
T Consensus       246 ~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  322 (401)
T PRK11043        246 PQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLL---IPFCVMAAANGAIYPIVVAQAL  322 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999999997765544443222222221111111 11222111   1111112233333344444444


Q ss_pred             ccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCC
Q 011118          415 DLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNP  450 (493)
Q Consensus       415 e~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p  450 (493)
                      +..| +++|++.|+.++++.+. ..+.++.+.+....
T Consensus       323 ~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        323 RPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             hhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            4455 47999999999999887 88888888776543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.57  E-value=6.8e-12  Score=130.46  Aligned_cols=349  Identities=13%  Similarity=0.064  Sum_probs=207.3

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHH-HHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQ-IWLVTQ   93 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~-~~~~~q   93 (493)
                      |.+.+...|.+.+++   -.+..=.+|+++.+ +..|...++..-.+-.+..++.++..|.++||.+|++..+ ...   
T Consensus         5 ~~~~~~~~~~~~~~~---~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~---   77 (382)
T PRK11128          5 PTRWLALSYFGYFFA---YGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLA---   77 (382)
T ss_pred             ccHHHHHHHHHHHHH---HHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHH---
Confidence            344556566666543   34555556677755 5778999999999999999999999999999998853322 111   


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhH
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRI  173 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrri  173 (493)
                      ...    ++..+.....   ...-|..+.    ...+.+.......++.... -.||.         ++..+.+++.|-.
T Consensus        78 ~~~----~~~~~~~~~~---~~~~~~l~i----~~~l~g~~~~~~~~~~~a~-~~~~~---------~~~~~a~~~~~~~  136 (382)
T PRK11128         78 LLT----LLFAVAFWFG---AHSFWLLFV----AIGLFNLFFSPLVPLTDAL-ANTWQ---------KQIGLDYGKVRLW  136 (382)
T ss_pred             HHH----HHHHHHHHHh---cccHHHHHH----HHHHHHHHHcccccHHHHH-HHHHH---------hhccCCcchHHHH
Confidence            111    1110111111   112222221    1122343343344443333 33562         2345667777777


Q ss_pred             HHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccc
Q 011118          174 DLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERE  253 (493)
Q Consensus       174 Dl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (493)
                      ......+||.++|.+.+..|.+....+.+    +....-.+++  +  ..|+..           |.+.++     +   
T Consensus       137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~----~~~~~~~~~~--~--~~~~~~-----------~~~~~~-----~---  189 (382)
T PRK11128        137 GSIAFVIGSALTGKLVSWFGEQAILWILT----AGVASMLLGQ--L--LRPTIM-----------PQGESR-----Q---  189 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHH----HHHHHHHHHH--H--ccCCCC-----------Cccccc-----c---
Confidence            78999999999999999889876553322    2222211111  1  223211           000000     0   


Q ss_pred             cccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHHcCCCchHHHH
Q 011118          254 SLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEWEGIPAYIIGI  332 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~~gls~~~iG~  332 (493)
                             +  .  .         +     ..++++..+++|.++..+...+++. ...++.+.+..|+.+.|+++..+|.
T Consensus       190 -------~--~--~---------~-----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~  244 (382)
T PRK11128        190 -------Q--E--S---------A-----GWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGY  244 (382)
T ss_pred             -------c--c--c---------c-----ccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHH
Confidence                   0  0  0         0     1234555677888777666555553 3334666777899889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHhhhchhhhhhhhhhh
Q 011118          333 ARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVAS-IWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQ  411 (493)
Q Consensus       333 ~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~-~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~  411 (493)
                      +.+.+.++++.+.+..+++.+|.|..+.-..+..    +...+... .+.+++ +   .+....++..++.-.+.....+
T Consensus       245 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~----~~~~~~~~~~~~~~~-~---~~~~~~~l~g~~~~~~~~~~~~  316 (382)
T PRK11128        245 LWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAI----CGVVRWGLMGSTTAL-P---WLIVIQILHCGTFTVCHLAAMR  316 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HHHHHHHHHHhhhhH-H---HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877554443    22222111 122211 1   1222333333443445778888


Q ss_pred             hhhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHHhccCCCC
Q 011118          412 QMQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGIIISNPQD  452 (493)
Q Consensus       412 l~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~ii~~~p~~  452 (493)
                      +.|+. |++++|+..+..+++++..  .++..+.|.+.+.-+.
T Consensus       317 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        317 YIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            88886 6777899999887776555  6888999988866543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.57  E-value=1.6e-11  Score=126.02  Aligned_cols=350  Identities=13%  Similarity=0.094  Sum_probs=201.5

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      ....+...-++..++..+..-+.|.+..+ ++.|....+.......+..++.++..|.+.||++||+++..+.+.-.+. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~-   83 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS-   83 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH-
Confidence            34444455566778888888888886544 5667778888888888999999999999999999999988765333222 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                         +.   ....    . .++..+...   ..+.|.......++.. ++-.||.    ++   ++..+.++.........
T Consensus        84 ---~~---~~~~----~-~~~~~~~~~---~~l~g~~~~~~~~~~~-~~~~~~~----~~---~~~~~~~~~~~~~~~~g  141 (385)
T TIGR00710        84 ---SL---GLAL----S-NNIETLLVL---RFVQAFGASAGSVISQ-ALVRDIY----PG---EELSRIYSILMPVLALA  141 (385)
T ss_pred             ---HH---HHHH----H-ccHHHHHHH---HHHHHcchhHHHHHHH-HHHHHhc----Cc---HHHHHHHHHHHHHHHHH
Confidence               11   1111    0 112121111   1223434444444422 3335565    22   56789999999999999


Q ss_pred             HhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccc
Q 011118          178 KLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLS  257 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (493)
                      ..+||.++|.+.+..+.+....+..+.-.+..+.    ..   ...|+.+++           +.++             
T Consensus       142 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~-----------~~~~-------------  190 (385)
T TIGR00710       142 PAVAPLLGGYILVWLSWHAIFAFLSLAGILLSAL----IF---FILPETLPY-----------EARI-------------  190 (385)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH----HH---HhCCCCCCC-----------cccC-------------
Confidence            9999999999998888776654333333332221    11   123321100           0000             


Q ss_pred             cccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHH-HHHHHhhhhhhHHHHHHH-HcCCCchHHHHHHH
Q 011118          258 HDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLE-WEGIPAYIIGIARG  335 (493)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~-~~gls~~~iG~~r~  335 (493)
                         .  .++.                .+.++..+++|.++...... +.+.....+......|+. ..|+++...|.+.+
T Consensus       191 ---~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  249 (385)
T TIGR00710       191 ---Q--ISTY----------------FETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFA  249 (385)
T ss_pred             ---C--HHHH----------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHH
Confidence               0  0000                01112223445444333322 222223334444455666 58999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhc
Q 011118          336 ISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQD  415 (493)
Q Consensus       336 ~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe  415 (493)
                      ...++++.|.++.+++.+|+|..|.-.++.....+...........+.+.  ...+........+|....-........|
T Consensus       250 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~  327 (385)
T TIGR00710       250 LNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS--WAMIIGPMMFVGIGNSMISSIAMAYALE  327 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999987766554432221111111111111111  1122222223334444344445555556


Q ss_pred             cCCCCcchhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118          416 LVPESDRCVVGGVQNSLQSTM-DLMAYTMGII  446 (493)
Q Consensus       416 ~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii  446 (493)
                      ..| +++|+++++.++.++.. .+.....+..
T Consensus       328 ~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       328 DFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             cCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            555 67999999999988776 6666666644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.56  E-value=1.3e-11  Score=128.33  Aligned_cols=375  Identities=11%  Similarity=0.066  Sum_probs=216.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      +.+..+..+.++...++.+..-.+|.+..+ ++-|.-..+.......+..++..+..|.+.||.+||+++..+.+...+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG   81 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            467778888888888888888888886554 4556677888888889999999999999999999999998887554433


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      ..       ++..    ...-+..+..-    .+.|.......+.... +-.||.    ++   ++..+.++.+...-.+
T Consensus        82 ~~-------l~~~----~~~~~~l~~~r----~l~G~~~~~~~~~~~~-~~~~~~----~~---~~~~~~~~~~~~~~~~  138 (382)
T PRK10091         82 NA-------MFTL----SSSYLMLAIGR----LVSGFPHGAFFGVGAI-VLSKII----KP---GKVTAAVAGMVSGMTV  138 (382)
T ss_pred             HH-------HHHH----hCcHHHHHHHH----HHHHhhhHHHHHHHHH-HHHHhC----Ch---HHhhHHHHHHHHHHHH
Confidence            11       1111    11112222111    1233333332223222 233554    32   4566778887777788


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      ...+||.++|.+.+..|.+.+.........+..+.       .+...|+.+++         +   +.            
T Consensus       139 g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~-------~~~~lp~~~~~---------~---~~------------  187 (382)
T PRK10091        139 ANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS-------IYFWVPDIRDE---------A---KG------------  187 (382)
T ss_pred             HHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH-------HHHhCCCCCcc---------c---cc------------
Confidence            88999999999988888877765444444433321       12234542200         0   00            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHH-HHHhhhhhhHHHHHHH-HcCCCchHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL-FFTVLSFGTLMTATLE-WEGIPAYIIGIAR  334 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalL-y~tVL~f~~l~~~yl~-~~gls~~~iG~~r  334 (493)
                            ..  .+.                 ++ .+++|.++..+....+ +.....+.+....|.. ..|+++...|.+.
T Consensus       188 ------~~--~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~  241 (382)
T PRK10091        188 ------GL--REQ-----------------FH-FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIM  241 (382)
T ss_pred             ------CH--HHH-----------------HH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                  00  000                 00 0122322222222221 2222222233345666 4799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhh-hhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLS-VIQQM  413 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~-~~~l~  413 (493)
                      ...++++++|.++.+++.+|+|..|...++.....+..   +.........+.   ......+...|....... .....
T Consensus       242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~  315 (382)
T PRK10091        242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLAL---LMLFFFGGMKTA---SLIFAFICCAGLFALSAPLQILLL  315 (382)
T ss_pred             HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHH---HHHHHHHhhHHH---HHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999998777665554222111   111111111111   112222333444444433 23466


Q ss_pred             hccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011118          414 QDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIR  479 (493)
Q Consensus       414 Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~R  479 (493)
                      |+..|++.+|+..+ +...+-+..++..+.|.+...-..+......+.+.+..+......+.+++|
T Consensus       316 ~~~~~~~~~~~~~~-~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (382)
T PRK10091        316 QNAKGGELLGAAGG-QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKR  380 (382)
T ss_pred             HhCCcchHHHHHHH-HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            77777777877654 333444448888888988876555666666665555555555555544443

>PRK10054 putative transporter; Provisional

Probab=99.56  E-value=1.2e-11  Score=129.79  Aligned_cols=353  Identities=11%  Similarity=0.075  Sum_probs=210.7

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |+++.+..+.++...|..+..--.|.++.+.++-|...++.......+..++++++.|.+.||.+||+++..+.+...+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~   86 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG   86 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence            47889999999999999998888888888888888889999888888999999999999999999999988776544333


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.. +. ..+      ++..+..+.   .+.++....+.++.     ..|+....++   ++..+.++..+.....
T Consensus        87 ----~~~-~~-~~~------~~~~~~~~~---~~~g~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~g~~~~~~~l  143 (395)
T PRK10054         87 ----FIA-IP-LVN------NVTLVVLFF---ALINCAYSVFSTVL-----KAWFADNLSS---TSKTKIFSLNYTMLNI  143 (395)
T ss_pred             ----HHH-HH-HHh------HHHHHHHHH---HHHHHHHHHHHHHH-----HHHHHHhcCH---hHHHHHHHHHHHHHHH
Confidence                111 11 111      111111111   12233222322221     2234333332   5688899999999999


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      ...+||.++|.+.. .+.+....+.    ++..++...++...   .|+.+           |++.++            
T Consensus       144 g~~igp~l~~~l~~-~g~~~~f~~~----~~~~~i~~i~~~~~---~~~~~-----------~~~~~~------------  192 (395)
T PRK10054        144 GWTVGPPLGTLLVM-QSINLPFWLA----AICSAFPLVFIQIW---VQRSE-----------KAIATE------------  192 (395)
T ss_pred             HHHHHHHHHHHHHH-hccCcHHHHH----HHHHHHHHHHHHHH---Hhccc-----------cccccc------------
Confidence            99999999999876 4654443222    22222222222221   12111           000000            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHH---HHcCCCchHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATL---EWEGIPAYIIGI  332 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl---~~~gls~~~iG~  332 (493)
                          .     ++.  .+             .+..+++|.++......+++ +..-.+......|+   .+.+.++..+|.
T Consensus       193 ----~-----~~~--~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  248 (395)
T PRK10054        193 ----T-----GSV--WS-------------PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAV  248 (395)
T ss_pred             ----h-----hhh--hh-------------hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHH
Confidence                0     000  00             02234666665544444332 22112222333444   346778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHhhhchhhhhhhhhhh
Q 011118          333 ARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW-IHNSLVAAYMLMVGVATSRLGLWMFDLSVIQ  411 (493)
Q Consensus       333 ~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~-~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~  411 (493)
                      +....++..+...+..+++.+|.+..+.-.++..    +...+..... ...+   ...+....++..+|....-.+...
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        249 VLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTL----CFVIGLVGFIFSGNS---LLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHhhhhheeeehhHHHHHHccCCchhHHHHHHH----HHHHHHHHHHHcchH---HHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999888888777888888888876654443332    1122221111 1111   122223344455666665667778


Q ss_pred             hhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCch
Q 011118          412 QMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFW  454 (493)
Q Consensus       412 l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~  454 (493)
                      ++++.+|++.||+..++++...-+.-++.++.|.+...-+.+.
T Consensus       322 ~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~  364 (395)
T PRK10054        322 LIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTLPPWS  364 (395)
T ss_pred             HHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence            8999999999999999876433344888888888887654433

>PRK10504 putative transporter; Provisional

Probab=99.55  E-value=1.1e-11  Score=131.98  Aligned_cols=397  Identities=11%  Similarity=0.055  Sum_probs=223.7

Q ss_pred             cCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHH
Q 011118           10 EQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIW   89 (493)
Q Consensus        10 ~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~   89 (493)
                      .+++.+++.++.++.+.++......+.....|.++.+ ++.|....+.......+...+..+..|.+.||++|||++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~   81 (471)
T PRK10504          3 DLPDSVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTA   81 (471)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            3445566788999999999999988999999998766 566777777777777788888999999999999999998766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhH
Q 011118           90 LVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSI  169 (493)
Q Consensus        90 ~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~  169 (493)
                      .+.-.+.    +.   .+..    . .+...+.+.   -.+.|.......+..... -.||.    ++   ++..+.++.
T Consensus        82 ~~~~~~~----~~---~~~~----~-~~~~~l~~~---~~l~g~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~  138 (471)
T PRK10504         82 IVLFTLG----SL---FCAL----S-GTLNELLLA---RVLQGVGGAMMVPVGRLT-VMKIV----PR---EQYMAAMTF  138 (471)
T ss_pred             HHHHHHH----HH---HHHH----h-CCHHHHHHH---HHHHHhhhHHHHHHHHHH-HHHHc----CH---HHHHHHHHH
Confidence            4332221    11   1111    1 111111111   112233333333232222 23444    22   567888999


Q ss_pred             HHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccc-cccC-
Q 011118          170 IRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDME-QSTS-  247 (493)
Q Consensus       170 mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~-~~~~-  247 (493)
                      .+....+...+||.++|.+.+..|++...........+..+.-    ..   ..|+...++ ++.   +..... .... 
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~----~~---~~~~~~~~~-~r~---~~~~~~~~~~~~  207 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT----LM---LMPNYTMQT-RRF---DLSGFLLLAVGM  207 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH----HH---hCCCccccC-CCC---ChHHHHHHHHHH
Confidence            9988899999999999999998887766644434444333221    11   223211100 000   000000 0000 


Q ss_pred             Ccccccccccccc-chhHHHHHH--------HHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhh-hhhhHHH
Q 011118          248 MPRERESLLSHDE-NNAELAEKR--------WRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVL-SFGTLMT  317 (493)
Q Consensus       248 ~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL-~f~~l~~  317 (493)
                      ..... ....++. +-.......        ......++-...+-.-.++ .+++|.++..+...+++.... ......+
T Consensus       208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  285 (471)
T PRK10504        208 ATLTL-ALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTP  285 (471)
T ss_pred             HHHHH-HHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000 0000000 000000000        0000000000000011222 478888888877777664433 3445666


Q ss_pred             HHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 011118          318 ATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVA  396 (493)
Q Consensus       318 ~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~  396 (493)
                      -|.++ +|.++...|+......++++.+..+.+++.+|+|..|...++...   ....+....+.+.... ...+....+
T Consensus       286 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~  361 (471)
T PRK10504        286 VFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLG---LALVSLLFMLVALLGW-YYLLPFVLF  361 (471)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH---HHHHHHHHHhcccccc-HHHHHHHHH
Confidence            77774 899999999999999999999999999999999987776554431   1111122222221111 111111222


Q ss_pred             hhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          397 TSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       397 ~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      +..+|........+.+.++.+|++++|+.+|+.+..+++. .++..+.+.+.
T Consensus       362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2224444445667788889999999999999998888777 66666655553

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.55  E-value=1.8e-11  Score=130.99  Aligned_cols=389  Identities=10%  Similarity=0.002  Sum_probs=209.2

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQ   93 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q   93 (493)
                      .+.+.+..++++.+++.+...+.....|.+. +-++-|....+.....-.+..++.+++.|.+.||++||+++..+.+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3446778899999999998888888888854 455667777777777788888899999999999999999887776443


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhH
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRI  173 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrri  173 (493)
                      .+.    +.+  . ..    . .+...+..   ...+.|............. -.|+.    ++   ++..+.++.+...
T Consensus        96 ~~~----~~~--~-~~----~-~~~~~l~~---~~~l~G~~~~~~~~~~~~~-~~~~~----~~---~~r~~~~~~~~~~  152 (496)
T PRK03893         96 SVG----TLA--C-GF----A-PGYWTLFI---ARLVIGMGMAGEYGSSATY-VIESW----PK---HLRNKASGFLISG  152 (496)
T ss_pred             HHH----HHH--H-HH----H-hHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHc----CH---HHHHHHHHHHHHH
Confidence            332    111  1 11    1 11212111   1123343333333222222 12333    22   5678888888888


Q ss_pred             HHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccc
Q 011118          174 DLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERE  253 (493)
Q Consensus       174 Dl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (493)
                      -.+..+++|.+.+.+.+..|.+....    ..++....- ++   .+...|+..+.++++++   +   ++. .  +..+
T Consensus       153 ~~~g~~~~~~~~~~l~~~~~w~~~f~----~~~~~~~~~-~~---~~~~~p~~~~~~~~~~~---~---~~~-~--~~~~  215 (496)
T PRK03893        153 FSIGAVVAAQVYSLVVPVWGWRALFF----IGILPIIFA-LW---LRKNLPEAEDWKEKHAG---K---APV-R--TMVD  215 (496)
T ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHH----HHHHHHHHH-HH---HHHhCCCchhhhhhccc---c---ccc-h--hHHH
Confidence            88999999999999998877765542    223332221 11   12244543211110000   0   000 0  0000


Q ss_pred             cccccccchhHHHHHHHHHH-HHhhhccccccccce-------------e-----e-ecccchHHHHHHHHHH-HH-hhh
Q 011118          254 SLLSHDENNAELAEKRWRWK-IIDWISNAPCVGAWQ-------------V-----Y-LKQEVVLPGVSLALLF-FT-VLS  311 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~-------------~-----y-~~q~v~la~~alalLy-~t-VL~  311 (493)
                      .....+...... ....... ............+|.             .     . .+.|.+. .+.....+ +. ..+
T Consensus       216 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  293 (496)
T PRK03893        216 ILYRGEHRIINI-LLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGV-MLMVVVLFAFLYSWP  293 (496)
T ss_pred             HHhcchhHHHHH-HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHHhccch
Confidence            000000000000 0000000 000000000000000             0     0 0111111 11111111 11 123


Q ss_pred             hhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHH
Q 011118          312 FGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAY  389 (493)
Q Consensus       312 f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~  389 (493)
                      ....+..|++ ..|+++...|.+.+...+++++|+++++++.+|+|..+....+.....   ......... ....+...
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  370 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQ---LLIIPVFAIGGANVWVLG  370 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH---HHHHHHhhccccHHHHHH
Confidence            4567888997 689999999999999999999999999999999997776554433111   111111111 11212111


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                      .........-.|   .......++|+.+|+++||+.+|++.+..++. .++.++.+.+...-+
T Consensus       371 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        371 LLLFFQQMLGQG---ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             HHHHHHHHHhcc---cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence            111111111122   23455678999999999999999999999887 777888888876644

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.54  E-value=1.5e-12  Score=132.34  Aligned_cols=361  Identities=11%  Similarity=0.042  Sum_probs=200.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHH
Q 011118           25 AHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSV  104 (493)
Q Consensus        25 s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~  104 (493)
                      +.++.......+.++.|. +.+-+.-|....+.......+...+..++.|.+.||++||+++..+.+...+..    .  
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~----~--   75 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN----L--   75 (379)
T ss_pred             hhhHHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHH----H--
Confidence            345555666777888887 455667788888999999999999999999999999999999888764444331    1  


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhh-H
Q 011118          105 ITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAP-A  183 (493)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP-~  183 (493)
                       +....     .+...+.+   .-.+.|.......+... ++-.||.    ++   ++..+.++..........+++| +
T Consensus        76 -~~~~~-----~~~~~~~~---~~~~~g~~~~~~~~~~~-~~~~~~~----~~---~~r~~~~~~~~~~~~~g~~~~~~~  138 (379)
T TIGR00881        76 -FFGFS-----TSLWVMAA---LWALNGIFQGMGWPPCG-RTVTKWF----SR---SERGTWVSFWNCSHNVGGGLLPPL  138 (379)
T ss_pred             -HHHHh-----hhHHHHHH---HHHHHHhhccccCCchH-HHHHHhc----CH---hhheeeEeehhccchhHHHHHHHH
Confidence             11110     12112111   11233444444443323 2334554    22   4577888888888899999999 5


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchh
Q 011118          184 ITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNA  263 (493)
Q Consensus       184 ~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (493)
                      +++.+....+.+....+..+...+..++   +..    ..|+.+++++.++.+  +   ++. ++.+       + +...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~--~---~~~-~~~~-------~-~~~~  197 (379)
T TIGR00881       139 VLFGIAELYSWHWVFIVPGIIAIIVSLI---CFL----LLRDSPQSCGLPPAE--E---MPN-EEPD-------G-DAEK  197 (379)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHH---Hhe----eeCCCccccccCccc--c---Ccc-cccc-------c-cccc
Confidence            6666666666555443322222222211   111    122211111000000  0   000 0000       0 0000


Q ss_pred             HHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHH-HHHHHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHH
Q 011118          264 ELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIG  341 (493)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~G  341 (493)
                      .+.++.       +     ....++..+++|.++...... +.++...++...+..|+.+ .|+++...|...+...+++
T Consensus       198 ~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  265 (379)
T TIGR00881       198 KEEELT-------K-----KQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGG  265 (379)
T ss_pred             cccccc-------c-----hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence            000000       0     012233445666555443333 3344445677778888875 7999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cc-hHHH--HHHHHHHHHhhhchhhhhhhhhhhhhhccC
Q 011118          342 IAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HN-SLVA--AYMLMVGVATSRLGLWMFDLSVIQQMQDLV  417 (493)
Q Consensus       342 llgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~-~~~s--~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~v  417 (493)
                      +.|.++.+++.+|.+..|........- .....++...+. +. ....  ...+..|     +...........+.+|.+
T Consensus       266 ~~~~~~~g~l~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~  339 (379)
T TIGR00881       266 LVGTLLAGWLSDKLFNGRRGPLAVFFM-ALIIVSLLVYWLNPAANPLMDLICLFALG-----FLVYGPQMLIGVIASELA  339 (379)
T ss_pred             chhHHHHHHHHHHHcCCcchHHHHHHH-HHHHHHHHHHhcCcchhHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHhc
Confidence            999999999999865444332222110 111112222222 11 1111  1122222     222333444556789999


Q ss_pred             CCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          418 PESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       418 p~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      |+++||+..|+.++.+++. .++..+.+.+..
T Consensus       340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            9999999999999988887 666677776654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.53  E-value=5.5e-11  Score=125.53  Aligned_cols=377  Identities=14%  Similarity=0.122  Sum_probs=207.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011118           27 FLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVIT  106 (493)
Q Consensus        27 ~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~  106 (493)
                      +.+....-+..=++|- +..-+..+.-..+..-..-.+...+..++.|.+.||.+||+++..+.+...+.    +.   .
T Consensus        26 ~~~~~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~----~~---~   97 (413)
T PRK15403         26 FAAYLTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA----CA---A   97 (413)
T ss_pred             HHHHHHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH----HH---H
Confidence            3344444455555555 34445556555565555556777788889999999999999998876433332    11   1


Q ss_pred             HHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHH
Q 011118          107 LLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITG  186 (493)
Q Consensus       107 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G  186 (493)
                      ...    . .++..+.+.   -.+.|+.+....+... +.-+||.    ++   ++..+.++.+...-.++.++||.++|
T Consensus        98 ~~~----a-~~~~~l~~~---r~l~Gi~~~~~~~~~~-~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~g~~lg~  161 (413)
T PRK15403         98 TLF----T-TSMTQFLIA---RFIQGTSICFIATVGY-VTVQEAF----GQ---TKGIKLMAIITSIVLVAPIIGPLSGA  161 (413)
T ss_pred             HHH----c-CCHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHhc----CH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111    1 122121111   1223444433333322 4456665    22   46788889888888999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHH
Q 011118          187 FIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELA  266 (493)
Q Consensus       187 ~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (493)
                      .+.+..|++.......+...+..+    +..   ...||-.+   ++       +.+.                  ..  
T Consensus       162 ~l~~~~gw~~~f~~~~~~~~i~~~----~~~---~~lp~~~~---~~-------~~~~------------------~~--  204 (413)
T PRK15403        162 ALMHFVHWKVLFAIIAVMGLIAFV----GLL---LAMPETVK---RG-------AVPF------------------SA--  204 (413)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHH----HHH---HhCCCCcc---cc-------CCCC------------------Ch--
Confidence            999888887776544444333322    211   12343110   00       0000                  00  


Q ss_pred             HHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHH
Q 011118          267 EKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAA  344 (493)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~Gllg  344 (493)
                           ++         ..++++..++||.++.......++ ....++....+.|+.+ .|+++...|........+++.|
T Consensus       205 -----~~---------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~  270 (413)
T PRK15403        205 -----KS---------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVA  270 (413)
T ss_pred             -----HH---------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence                 00         123344456777777655444333 3445566667778886 5999999999887777788888


Q ss_pred             HHHHHHHHhhhchhhhhHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhh--hhhhccCCCCc
Q 011118          345 TILYPILQSRISTLRTGLWSIWSQWFCL-LICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVI--QQMQDLVPESD  421 (493)
Q Consensus       345 T~~~~~l~~riGl~r~g~~~~~~q~~~L-~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~--~l~Qe~vp~~~  421 (493)
                      +.+..++.++.+-.|........+.+.. .......+.+...   ..+..+.++.-+|.........  .+.|..+|   
T Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~---~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~---  344 (413)
T PRK15403        271 NAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVW---LWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLP---  344 (413)
T ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccH---HHHHHHHHHHHHHHHHHhHHHHHHHhccCCCC---
Confidence            8888887765543343221111111111 1111111122221   1123344444445444444444  56666665   


Q ss_pred             chhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 011118          422 RCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHLFHF  485 (493)
Q Consensus       422 rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rghl~h~  485 (493)
                      +|+++|+.+.++.+. .++..+.+.+...-..-.+.. ..+.........+....+++|+|-.|-
T Consensus       345 ~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (413)
T PRK15403        345 KGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHL-LAVVAGVIVVFTLAGLLNRVRQHQAAE  408 (413)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            699999999999888 888888887755533333322 222222333333334456677876663

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.52  E-value=3e-11  Score=128.12  Aligned_cols=396  Identities=12%  Similarity=0.048  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAG  101 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~  101 (493)
                      +..+.++............|.+..+ ++-|...++.....-.++..+.+++.|.+.||++||+++..+.+.-.+.    +
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~----~  102 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII----N  102 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH----H
Confidence            4555555544444667778876554 6678888899999999999999999999999999999987765322211    1


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhh
Q 011118          102 VSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA  181 (493)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~g  181 (493)
                      .   +...     ..++..+.+.   -.+.|.......+... ++-.||.    ++   ++..+..+.+...-....+++
T Consensus       103 ~---~~~~-----~~~~~~l~~~---~~l~g~~~g~~~~~~~-~~~~~~~----~~---~~rg~~~~~~~~~~~~g~~~~  163 (434)
T PRK11663        103 I---LFGF-----SSSLWAFALL---WVLNAFFQGWGWPVCA-KLLTAWY----SR---TERGGWWAIWNTAHNVGGALI  163 (434)
T ss_pred             H---HHHH-----HhHHHHHHHH---HHHHHHHHHccchHHH-HHHHHhC----CH---HHHHHHHHHHHHHHHHHHHHH
Confidence            1   1111     0111111111   1122333333333322 3334565    22   457888888888889999999


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccc
Q 011118          182 PAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDEN  261 (493)
Q Consensus       182 P~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (493)
                      |.+.|.+....|.+....+.++...+..+.   ...    ..|+.++..+.      |+..++.++. .     ..+++.
T Consensus       164 ~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~---~~~----~~~~~p~~~~~------~~~~~~~~~~-~-----~~~~~~  224 (434)
T PRK11663        164 PLVVGAIALHYGWRYGMMIAGIIAIVVGLF---LCW----RLRDKPQAMGL------PSVGEWRHDA-L-----ELAQQQ  224 (434)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHH---HHH----HcCCCHhhcCC------CCcccccccc-c-----ccchhc
Confidence            999999998888776654433333322211   111    12221110000      0000000000 0     000000


Q ss_pred             hhHHHHHHHHHHHHhhhccccccccce-eeecccchHHHHHHH-HHHHHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHH
Q 011118          262 NAELAEKRWRWKIIDWISNAPCVGAWQ-VYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLE-WEGIPAYIIGIARGISA  338 (493)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~a  338 (493)
                        .++..+             .++-++ ..+++|.+....... +.|+...++...+..|++ +.|+++...+...+.-.
T Consensus       225 --~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~  289 (434)
T PRK11663        225 --EGAGLS-------------RKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFE  289 (434)
T ss_pred             --cccCCC-------------hhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence              000000             011111 124555444433322 333333345567788886 57999999999999889


Q ss_pred             HHHHHHHHHHHHHHhhhch-hhhhHHHHHHHHHHHHHHHHHH-hhcc-hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhc
Q 011118          339 TIGIAATILYPILQSRIST-LRTGLWSIWSQWFCLLICVASI-WIHN-SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQD  415 (493)
Q Consensus       339 v~GllgT~~~~~l~~riGl-~r~g~~~~~~q~~~L~~~v~~~-~~~~-~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe  415 (493)
                      ++++.|.++.+++.+|++- .|....-..  .++...+.... ..+. +......++.++...-.|.   -.....+..|
T Consensus       290 ~~~~~g~~~~g~l~dr~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~  364 (434)
T PRK11663        290 LGGFIGALVAGWGSDKLFNGNRGPMNLIF--AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGP---QMLIGMAAAE  364 (434)
T ss_pred             HHHHHHHHHHhhhHHHhccCCccHHHHHH--HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhH---HHHHHHHHHh
Confidence            9999999999999999831 222111000  01111111111 1111 1111111111111111111   1111234577


Q ss_pred             cCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011118          416 LVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKHL  482 (493)
Q Consensus       416 ~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rghl  482 (493)
                      ..|+++||++.|+.+++.++. -++..+.+.+....+ ......+..+....++ +...+..|.|.|.
T Consensus       365 ~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~  430 (434)
T PRK11663        365 CSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISA-LLLLPFLNAQAPR  430 (434)
T ss_pred             cccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHH-HHHHHHHhhhchh
Confidence            889999999999999998887 566777787776544 3333333322222222 3334445566654

>TIGR00895 2A0115 benzoate transport

Probab=99.51  E-value=4.1e-12  Score=130.19  Aligned_cols=367  Identities=11%  Similarity=0.044  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAG  101 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~  101 (493)
                      .+...+....+...+.+..|.+.. -++-+....+.......+..++.+++.|.+.||++||+++..+.+...+.    +
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~----~   96 (398)
T TIGR00895        22 SFLIMLMDGYDLAAMGFAAPAISA-EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF----T   96 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH----H
Confidence            344455555555566667777544 35557777888888888999999999999999999999988876443333    1


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhh
Q 011118          102 VSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA  181 (493)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~g  181 (493)
                      .   .+...     .++..+.+.   ..+.|.......+.. .+.-.||.    ++   ++..+.++...........+|
T Consensus        97 ~---~~~~~-----~~~~~~~~~---~~~~g~~~~~~~~~~-~~~~~~~~----~~---~~r~~~~~~~~~~~~~g~~~~  157 (398)
T TIGR00895        97 L---LCALA-----TNVTQLLIL---RFLAGLGLGGLMPNL-NALVSEYA----PK---RFRGTAVGLMFCGYPIGAAVG  157 (398)
T ss_pred             H---HHHHc-----cchHHHHHH---HHHHhcccccchhhH-HHHHHHHc----CH---HhhchhHhhHhhHHHHHHHHH
Confidence            1   11110     122222111   112233333333332 22333444    22   457888999999999999999


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccC---CCcccccccCCcccccccccc
Q 011118          182 PAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRS---MPIDMEQSTSMPRERESLLSH  258 (493)
Q Consensus       182 P~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  258 (493)
                      |.++|.+.+..|.+....+.++...+..++-    ..   ..|+..+..++++++.   ..++..+....+.  ++..++
T Consensus       158 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  228 (398)
T TIGR00895       158 GFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL----MR---FLPESIDFLVSKRPETVRRIVNAIAPQMQAEA--QSALPE  228 (398)
T ss_pred             HHHHHHHhhcccceeehhhhhhHHHHHHHHH----HH---hCCCCChHHHhcCHHHHHHHHHHHHHhccccc--cccccc
Confidence            9999999887776554432222222222221    11   1222211000000000   0000000000000  000000


Q ss_pred             ccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH----HHhhhhhhHHHHHHHHcCCCchHHHHHH
Q 011118          259 DENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF----FTVLSFGTLMTATLEWEGIPAYIIGIAR  334 (493)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy----~tVL~f~~l~~~yl~~~gls~~~iG~~r  334 (493)
                       +.......    +            +.++..++++..+....+.+.+    +........+..|.++.|+++...|.+.
T Consensus       229 -~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  291 (398)
T TIGR00895       229 -QKATQGTK----R------------SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGG  291 (398)
T ss_pred             -cccccchh----h------------HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence             00000000    0            1111112222222222222222    1122233344445557899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQ  414 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Q  414 (493)
                      +...+++++|.++.+++.+|+|..+.......    +...+....+...+..   .+....++..++.-........+.+
T Consensus       292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~  364 (398)
T TIGR00895       292 ALFNFGGVIGSIIFGWLADRLGPRVTALLLLL----GAVFAVLVGSTLFSPT---LLLLLGAIAGFFVNGGQSGLYALMA  364 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH----HHHHHHHHHHHhhCHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999996533222111    1111111111111111   1112223333444455677889999


Q ss_pred             ccCCCCcchhHHHHHHHHHHhh-HHHHHHHHH
Q 011118          415 DLVPESDRCVVGGVQNSLQSTM-DLMAYTMGI  445 (493)
Q Consensus       415 e~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~i  445 (493)
                      +.+|+++||+..|+..+..++. .++.++.|.
T Consensus       365 ~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       365 LFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999988777 555555554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.49  E-value=1.8e-10  Score=120.58  Aligned_cols=369  Identities=12%  Similarity=0.037  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHhhHHHHH----HHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEF----SVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~F----a~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      +...-.+....+|.+..    +.|.+.. -++-|.-.++.....-.+...+..++.|.+.||++||+++..+...-.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~   88 (393)
T PRK09705         10 MLLVLVLIGLNMRPLLTSVGPLLPQLRQ-ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGA   88 (393)
T ss_pred             HHHHHHHHHHHcchhhhccchhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHH
Confidence            33445666666665444    4565443 345577778888888888999999999999999999999988874433331


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                      .       ....     ..++..+..   .-.+.|.......+. ...+-+||.+        ++..++++.........
T Consensus        89 ~-------~~~~-----a~~~~~ll~---~r~l~Gig~~~~~~~-~~~~~~~~~~--------~~~~~~~g~~~~~~~~g  144 (393)
T PRK09705         89 L-------MREL-----YPQSALLLS---SALLGGVGIGIIQAV-MPSVIKRRFQ--------QRTPLVMGLWSAALMGG  144 (393)
T ss_pred             H-------HHHH-----CcchHHHHH---HHHHHHhHHHHHhhh-hhHHHHHHcc--------ccchhHHHHHHHHHHHH
Confidence            1       1111     112222211   122334444444433 2334566752        23467788777767777


Q ss_pred             HhhhhHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          178 KLLAPAITGFIISFV-SLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~-s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      -.+||.+++.+.+.. +.+.+..+..+...+..+    ......++.|+               +.++.           
T Consensus       145 ~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------------~~~~~-----------  194 (393)
T PRK09705        145 GGLGAAITPWLVQHSETWYQTLAWWALPAVVALF----AWWWQSAREVA---------------SSHKT-----------  194 (393)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----HHHHHhcCCCc---------------cccCC-----------
Confidence            888888888887764 555544332222222211    11111111110               00000           


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccch-HHHHHHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVV-LPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARG  335 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~-la~~alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~  335 (493)
                          .  .  .               ..    ..+++|.+ ...+...+.++...++...+..|+.++|+++...|...+
T Consensus       195 ----~--~--~---------------~~----~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~  247 (393)
T PRK09705        195 ----T--T--T---------------PV----RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLA  247 (393)
T ss_pred             ----C--c--C---------------Cc----ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHH
Confidence                0  0  0               00    01122322 222222222233334555677888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhc
Q 011118          336 ISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQD  415 (493)
Q Consensus       336 ~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe  415 (493)
                      +.++++++|.++.+++.+|+|..+....+...   +........+.+........++.|+.   .|.. +..+.....|+
T Consensus       248 ~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~l~g~g---~g~~-~~~~~~~~~~~  320 (393)
T PRK09705        248 LMTLGQAAGALLMPAMARHQDRRKLLMLALVL---QLVGFCGFIWLPLQLPVLWAMVCGLG---LGGA-FPLCLLLALDH  320 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHH---HHHHHHHHHHccchHHHHHHHHHHHh---ccch-HHHHHHHHHhh
Confidence            99999999999999999999977766655432   22221222223322222222233332   2211 22344455666


Q ss_pred             cCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011118          416 LVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIR  479 (493)
Q Consensus       416 ~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~R  479 (493)
                      ..|++++|+++|+.+++.+.. .++..+.+.+...-+.+.....+.......+......+..+.|
T Consensus       321 ~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        321 SVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            667789999999999999887 7788888888887766666555555444444444444433333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.49  E-value=9.3e-11  Score=121.90  Aligned_cols=273  Identities=14%  Similarity=0.055  Sum_probs=163.6

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |-.+..+..-.....|..++--+.|.+..+ ++.|...++.....-.+..++..++.|.+.||++|||++..+.+.-.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~   81 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA   81 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence            445667778888999999999999997665 4557777787777788888899999999999999999887765332222


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.+  . ..    . .+...+...   -.+.|.......+... +.-+||.    ++   ++..+.++.......+
T Consensus        82 ----~~~--~-~~----~-~~~~~~~~~---~~l~g~~~~~~~~~~~-~~i~~~~----~~---~~r~~~~~~~~~~~~i  138 (392)
T PRK10473         82 ----SLL--C-SL----A-ETSSLFLAG---RFLQGIGAGCCYVVAF-AILRDTL----DD---RRRAKVLSLLNGITCI  138 (392)
T ss_pred             ----HHH--H-HH----h-CcHHHHHHH---HHHHHhhhhHHHHHHH-HHHHHHc----CH---HHHHHHHHHHHHHHHH
Confidence                211  1 11    1 111111111   1123333333332222 2234444    22   5678889998888889


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      +.+++|.+++.+.+..|.+....+..+...+..+.-+   .    ..||.+++  ++         ++            
T Consensus       139 ~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~---~----~~~~~~~~--~~---------~~------------  188 (392)
T PRK10473        139 IPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL---F----ILKETRPA--RA---------PA------------  188 (392)
T ss_pred             HHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH---H----HcCCCCCc--cc---------CC------------
Confidence            9999999999988777776655444443333332211   1    12321100  00         00            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHH-HcCCCchHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLE-WEGIPAYIIGIAR  334 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~-~~gls~~~iG~~r  334 (493)
                          +...  .    ++             .+..+++|.++.......+. .....+......|.. +.|+++...|.+.
T Consensus       189 ----~~~~--~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  245 (392)
T PRK10473        189 ----ASSK--P----RE-------------NSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIM  245 (392)
T ss_pred             ----ccch--H----HH-------------HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHH
Confidence                0000  0    00             00113444444333333222 222333333444555 5799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      ...+++++++.+..+++.+|+|..|...++..
T Consensus       246 ~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        246 ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999998776655543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=9.1e-11  Score=125.07  Aligned_cols=402  Identities=10%  Similarity=0.044  Sum_probs=202.1

Q ss_pred             hhHHHHHHHHHHHHHhhHHH----HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMW----EFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVT   92 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~----~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~   92 (493)
                      +.-+.++.+.++...+..+.    .++.|.+ ... .-|....+.......+...+.+++.|.+.||++||+++..+.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            34456677777776665544    4566653 344 56778888888889999999999999999999999998887643


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHh
Q 011118           93 QNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRR  172 (493)
Q Consensus        93 q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrr  172 (493)
                      -.+.    +.+ .. +.+  ....++..+..+.   .+.|..+....+.....+ -||.    .+   ++..+.++....
T Consensus       103 ~~i~----~~~-~~-~~~--~~~~~~~~~~~~~---~l~gi~~g~~~~~~~~~~-~~~~----~~---~~r~~~~~~~~~  163 (452)
T PRK11273        103 AAAV----MLF-MG-FVP--WATSSIAVMFVLL---FLCGWFQGMGWPPCGRTM-VHWW----SQ---KERGGIVSVWNC  163 (452)
T ss_pred             HHHH----HHH-HH-hhh--cccccHHHHHHHH---HHHHHHHhccchHHHHHH-HHhC----Ch---HHHHHHHHHHHH
Confidence            3332    111 11 111  0111221111111   123434443333222222 2343    22   456777777655


Q ss_pred             HHHHHH-hhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-hhhhhhccCCCcccccccCCcc
Q 011118          173 IDLTCK-LLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAE-SSQRRIRRSMPIDMEQSTSMPR  250 (493)
Q Consensus       173 iDl~~~-l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~-~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                      .-.++- +.+|+..+.+....+.+.+..+.+..-.+..   .+.+..+ ++.|+-.. +++++.++ +.   ++.    .
T Consensus       164 ~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~---~l~~~~~-~~~~~~~~~~~~~~~~~-~~---~~~----~  231 (452)
T PRK11273        164 AHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA---LFAFAMM-RDTPQSCGLPPIEEYKN-DY---PDD----Y  231 (452)
T ss_pred             HHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHHHHc-cCCHhhcCCCChhhhhh-cc---ccc----c
Confidence            555554 5667654444333355544433222222222   2222211 12221100 00000000 00   000    0


Q ss_pred             ccccccccccchhHHHHHHHHHHHHhhhccccccccce-eeecccchHHHHHHH-HHHHHhhhhhhHHHHHHHH-cCCCc
Q 011118          251 ERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQ-VYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLEW-EGIPA  327 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~~-~gls~  327 (493)
                            .+++..    +++             ..+.++ ..+++|.++...... +.|....++....+.|+.+ .|+++
T Consensus       232 ------~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~  288 (452)
T PRK11273        232 ------NEKHEQ----ELT-------------AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  288 (452)
T ss_pred             ------ccccCC----Ccc-------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence                  000000    000             011111 124566665544443 3344445677788999986 79999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-c-chHHH--HHHHHHHHHhhhchhh
Q 011118          328 YIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-H-NSLVA--AYMLMVGVATSRLGLW  403 (493)
Q Consensus       328 ~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~-~~~~s--~~~l~~gi~~SR~GLw  403 (493)
                      ...|......+++++.|+++++++.+|++..|-....+.. ..+...+....+. + ...+.  ..++..|..     .+
T Consensus       289 ~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~  362 (452)
T PRK11273        289 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF-MTLVTIATIVYWLNPAGNPTVDMACMIVIGFL-----IY  362 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHH-----HH
Confidence            9999999999999999999999999999544422111111 0122222222222 1 11111  122222221     11


Q ss_pred             hhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HH-HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011118          404 MFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DL-MAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKH  481 (493)
Q Consensus       404 ~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l-~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rgh  481 (493)
                      ........+.+|..|+++||+.+|..++..++. .+ +..+.+.+....+.-....+....++. +.+....+.+-+|+|
T Consensus       363 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~  441 (452)
T PRK11273        363 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL-AVILLIVVMIGEKRH  441 (452)
T ss_pred             hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHH-HHHHHHHHhccccch
Confidence            111122335678999999999999999887776 44 467888877665532333333333333 333444444434444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.47  E-value=6e-11  Score=126.26  Aligned_cols=394  Identities=11%  Similarity=-0.010  Sum_probs=221.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      .+..+..+.++..++..+...+.|.+..+ ++.|....+.......++.++..+..|.+.||++||+++..+.+...+. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~-   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG-   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH-
Confidence            45667889999999999999999997655 5557777888888889999999999999999999999998886544333 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                         +.   .+..     ..++..+....   .+.|.......+..... -.||.    ++   ++..+.++.......+.
T Consensus        81 ---~~---~~~~-----~~~~~~l~~~~---~~~G~~~~~~~~~~~~~-i~~~~----~~---~~r~~~~~~~~~~~~~g  138 (485)
T TIGR00711        81 ---SL---LCGV-----APNLELMIIFR---VIQGFGGGPLIPLSFST-LLNIY----PP---EKRGRAMAIWGLTVLVA  138 (485)
T ss_pred             ---HH---HHhC-----cCCHHHHHHHH---HHHHhhhhhHHHHHHHH-HHHHC----CH---HHHHHHHHHHHHHHHHH
Confidence               11   1111     11222222211   22344444444332322 24454    22   56788888888889999


Q ss_pred             HhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccC---Ccccccc
Q 011118          178 KLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTS---MPRERES  254 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  254 (493)
                      ..+||.++|.+.+..|.+...........+..+.    ...   ..|+.+++++++.|.  .+.......   .....++
T Consensus       139 ~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~d~--~g~~l~~~~~~~~~~~~~~  209 (485)
T TIGR00711       139 PALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV----AFF---ILPRDKPAASENFDF--LGLLLLSVGLGSLLYGLSE  209 (485)
T ss_pred             hhhhhccHhHhccCcCceehhhhhhHHHHHHHHH----HHH---HcCCccccccCCCcH--HHHHHHHHHHHHHHHHHhh
Confidence            9999999999988777665543333333332221    111   123211100000000  000000000   0000000


Q ss_pred             ccccccchhHHHHHH-------HHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCC
Q 011118          255 LLSHDENNAELAEKR-------WRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGI  325 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gl  325 (493)
                      ...++...+......       ......++.+++.....++ .+++|.+........++ +...+....+..|+.+ .|+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~  288 (485)
T TIGR00711       210 GPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLR-LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGY  288 (485)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            000000000000000       0000001111100111222 35666665554444333 4444555677788885 899


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHhhhchhhh
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW-IHNSLVAAYMLMVGVATSRLGLWM  404 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~-~~~~~~s~~~l~~gi~~SR~GLw~  404 (493)
                      ++...|.......++.+++..+.+++.+|+|..+...++..    +...+..... ...+..+...+....++..+|.-.
T Consensus       289 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~  364 (485)
T TIGR00711       289 TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI----LYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGC  364 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH----HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997666554443    2222211111 101111111112223334455555


Q ss_pred             hhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          405 FDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       405 fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      +........|+.+|+++||+.+|+.+...++. .++..+.+.+..+
T Consensus       365 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       365 FFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677788889999999999999999998877 6666776766543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.47  E-value=7.3e-11  Score=126.24  Aligned_cols=385  Identities=10%  Similarity=0.023  Sum_probs=201.7

Q ss_pred             CcccccCCCcchhhHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHHHHhhhccceeeecccc
Q 011118            5 PLIVQEQPAITSFLTTYLYVAHFLARWGARMWEFSVGLYMI---SVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT   81 (493)
Q Consensus         5 ~~~~~~~~~~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv---~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~   81 (493)
                      |....|+++.++..-|.++.+.++.....-.+.++.+.++.   ..+..|.-..+.....-.+...+.+|..|.++||++
T Consensus         3 ~~~~~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g   82 (455)
T TIGR00892         3 PALPPEGPPPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFG   82 (455)
T ss_pred             CCCCCCCCCCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence            33444555544433456666666554333233333333332   344445556666655555666788899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChh
Q 011118           82 YVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPE  161 (493)
Q Consensus        82 R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~  161 (493)
                      ||+++..+.+.-.+.    +++  ....     ..-+..+...   ..+.|.......+... ++-.||.    +    +
T Consensus        83 ~r~~l~~~~~~~~~~----~~~--~~~~-----~~~~~l~~~~---~~l~G~~~~~~~~~~~-~~~~~~~----~----~  139 (455)
T TIGR00892        83 CRPVVIAGGLLASLG----MIL--ASFS-----SNVIELYLTA---GFITGLGLAFNFQPSL-TMLGKYF----Y----R  139 (455)
T ss_pred             chHHHHhhHHHHHHH----HHH--HHHh-----hhHHHHHHHH---HHHHHhcchhhhhHHH-HHHHHHH----H----h
Confidence            999988776433322    221  1011     1111111111   0122322222222222 2334575    2    2


Q ss_pred             hhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcc
Q 011118          162 ALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPID  241 (493)
Q Consensus       162 ~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~  241 (493)
                      +..+.++.....-.+...++|.++|.+....|.+.+..+.++.-++..+.    ...+ ++.|...++.+.+.+   + .
T Consensus       140 ~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~----~~~~-~~~~~~~~~~~~~~~---~-~  210 (455)
T TIGR00892       140 RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVC----GALM-RPVGPSQRVSKSKSK---E-G  210 (455)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH----HHHh-CCCCccccccccccc---c-c
Confidence            34667777777777788899999999999888877765444433332221    1111 111111000000000   0 0


Q ss_pred             cccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccc--cceeeecccchHHHHHHHHHHHHh-hhhhhHHHH
Q 011118          242 MEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVG--AWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTA  318 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~  318 (493)
                      .++.               +..++.++   .+..++     ..+  .++ ++++|.++..+....+.+.. ......+..
T Consensus       211 ~~~~---------------~~~~~~~~---~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  266 (455)
T TIGR00892       211 LPPD---------------GSTKKLSK---KSTAEK-----INRFLDFS-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVP  266 (455)
T ss_pred             CCCC---------------Cccccccc---cchhhh-----hhhhcchH-HhcCchHHHHHHHHHHHHHHccchHHHHHH
Confidence            0000               00000000   000000     111  122 56788777655544444322 334456677


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhhhhHHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHH
Q 011118          319 TLEWEGIPAYIIGIARGISATIGIAATILYPILQSRI--STLRTGLWSIWSQWFCLLICV-ASIWIHNSLVAAYMLMVGV  395 (493)
Q Consensus       319 yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri--Gl~r~g~~~~~~q~~~L~~~v-~~~~~~~~~~s~~~l~~gi  395 (493)
                      |+.+.|+++...|.+.++.+++++.+....+++.+|.  +..|.-.++...  ++...+. .....+ ..+..   ....
T Consensus       267 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~-~~~~~---~i~~  340 (455)
T TIGR00892       267 YAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL--LFNGLTHLLCALAG-DYTGL---VIYC  340 (455)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH--HHHHHHHHHHHHhc-hHHHH---HHHH
Confidence            8888999999999999999999999999999988763  333333222210  1111111 111122 12211   1122


Q ss_pred             HhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC
Q 011118          396 ATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       396 ~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                      .+..++......+..++.++.+|++++|+..|+.++.+++. .++..+.+.+....+
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            22223444557778889999999999999999999998888 677777777766544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.47  E-value=2.3e-10  Score=123.70  Aligned_cols=386  Identities=11%  Similarity=0.061  Sum_probs=225.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      ....+..+.++......+-..+.|-+..++ +.|.-.++.....-.+...++.++.|.+.||++||+++..+.+.-.+. 
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l-~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~-   84 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTL-GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA-   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-
Confidence            456688899999999999999999976554 556677777777778888888899999999999999998887544333 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                         +..  . ..    . .++..+.+.   -.+.|+......++....+.+++.    +  + ++..+.++.+.......
T Consensus        85 ---~~~--~-~~----a-~~~~~li~~---r~l~G~g~~~~~~~~~~~l~~~~~----~--~-~~r~~~~g~~~~~~~~g  143 (495)
T PRK14995         85 ---SLA--A-AF----S-PTASWLIAT---RALLAIGAAMIVPATLAGIRATFT----E--E-KQRNMALGVWAAVGSGG  143 (495)
T ss_pred             ---HHH--H-HH----c-CCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcC----C--H-HHHHHHHHHHHHHHHHH
Confidence               111  1 11    1 122222211   123344444444443444334442    1  2 67899999999999999


Q ss_pred             HhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCC-------cc
Q 011118          178 KLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM-------PR  250 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~-------~~  250 (493)
                      ..+||.++|.+.+..|.+....    .|..-.++-..+...   ..|+-+++  ++ +   +.|.......       ..
T Consensus       144 ~~~gp~lgg~l~~~~gwr~~f~----i~~~~~~~~~~l~~~---~l~~~~~~--~~-~---~~d~~g~~~~~~~~~~l~~  210 (495)
T PRK14995        144 AAFGPLVGGILLEHFYWGSVFL----INVPIVLVVMGLTAR---YVPRQAGR--RD-Q---PLNLGHALMLIVAILLLVY  210 (495)
T ss_pred             HHHHHHHHHHhhccCChHHHHH----HHHHHHHHHHHHHHH---hCCCCCCC--CC-C---CCChHhHHHHHHHHHHHHH
Confidence            9999999999999888776653    344333332222222   23431110  00 0   0000000000       00


Q ss_pred             ccccccccccchhHHHHH-------HHHHHHHhhhc-cccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHH
Q 011118          251 ERESLLSHDENNAELAEK-------RWRWKIIDWIS-NAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLE  321 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~-~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~  321 (493)
                      ... ....+...+....-       .......++.+ ++. .-.++ .+++|.+.......+..+ ...++...+..|+.
T Consensus       211 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p-~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq  287 (495)
T PRK14995        211 SAK-TALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRP-MIDMR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQ  287 (495)
T ss_pred             HHH-hccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcCHH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000 00000000000000       00000011111 011 11122 367788877776665553 33456667777888


Q ss_pred             H-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhhh
Q 011118          322 W-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATSR  399 (493)
Q Consensus       322 ~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~SR  399 (493)
                      . +|+++.+.|.......++..+++.+.+++.+|+|..+.-..+.....+  ......... ..+.+.   .....++..
T Consensus       288 ~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~---~~~~~~l~G  362 (495)
T PRK14995        288 FVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSAL--SFYGLAMTDFSTQQWQ---AWGLMALLG  362 (495)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH--HHHHHHHhcCCCchHH---HHHHHHHHH
Confidence            5 899999999999999999999999999999999975544433331111  111111111 112221   123344455


Q ss_pred             chhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          400 LGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       400 ~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      +|.-......+...|+.+|++++|+.+++.+...++. .++.-+.+.++
T Consensus       363 ~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        363 FSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666667778889999999999999999999888777 66766666654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.45  E-value=4.1e-10  Score=117.23  Aligned_cols=349  Identities=12%  Similarity=0.039  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHH
Q 011118           20 TYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIV   99 (493)
Q Consensus        20 ~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~   99 (493)
                      +.++.+.+.--.+..+..=-.|.++.+ +.-|...++.....-.+...+.++..|.+.||++|++..+...     . ..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-----~-~~   79 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLL-----A-LA   79 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-----H-HH
Confidence            345555555555555555556677765 4668888888888888899999999999999998855432221     1 11


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHh
Q 011118          100 AGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKL  179 (493)
Q Consensus       100 s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l  179 (493)
                      +... ...+..   ..++...+....   .+.+....-..+... ++-+||.         ++..+.-+.+|..-.++-+
T Consensus        80 ~~l~-~~~~~~---~~~~~~~l~~~~---~l~~~~~~~~~p~~~-al~~~~~---------~~~~~~~g~~~~~~slG~~  142 (382)
T TIGR00902        80 SAIF-AAAFSA---GAHNAWLLFIAI---GLFALFFSAGMPIGD-ALANTWQ---------KQFGLDYGKVRLIGSAAFI  142 (382)
T ss_pred             HHHH-HHHHHH---hhhhHHHHHHHH---HHHHHHHccchhHHH-HHHHHHH---------HHcCCCccHHHHHHHHHHH
Confidence            1110 110110   111221111111   112222222222212 2224551         2335566778888889999


Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccc
Q 011118          180 LAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHD  259 (493)
Q Consensus       180 ~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (493)
                      +||.++|.+.+..|.+.........    ...  ..+...  ..|+.+++   +     +   ++.    +         
T Consensus       143 ~g~~l~g~l~~~~g~~~~f~~~~~~----~~~--~~~~~~--~~~~~~~~---~-----~---~~~----~---------  190 (382)
T TIGR00902       143 IGSALFGGLIGMFDEQNILAILTAG----LAF--MLIGFL--IKPTIPPK---D-----A---IPE----D---------  190 (382)
T ss_pred             HHHHHHHHHHHHcChhHHHHHHHHH----HHH--HHHHHH--cCCCCCCC---c-----c---ccc----c---------
Confidence            9999999999988876654322111    111  111111  12221100   0     0   000    0         


Q ss_pred             cchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHHcCCCchHHHHHHHHHH
Q 011118          260 ENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEWEGIPAYIIGIARGISA  338 (493)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~~gls~~~iG~~r~~~a  338 (493)
                      +.     .               ..+.++..+|+|.++..+...+++. ....+.+....|+++.|+++..+|.+.++++
T Consensus       191 ~~-----~---------------~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~  250 (382)
T TIGR00902       191 ES-----Q---------------GDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGV  250 (382)
T ss_pred             cc-----c---------------cchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHH
Confidence            00     0               0111233457777766666665543 3345667778899899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCC
Q 011118          339 TIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVP  418 (493)
Q Consensus       339 v~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp  418 (493)
                      +.++.+.+..+++.||+|..+.-.++.....+...   ...+.+ +.+.   +.....+-.+..-.+-.+..+++|+. |
T Consensus       251 ~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~---~~~~~~-~~~~---~~~~q~l~g~~~~~~~~~~~~~i~~~-~  322 (382)
T TIGR00902       251 LAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWA---IIGAIE-AFPL---IFLLQILHCGTFAVCHLAAMRYIAAQ-P  322 (382)
T ss_pred             HHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHH---HHHhHh-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            99999999999999999988876655542221111   111122 1111   11122222233334567788899988 9


Q ss_pred             CCcchhHHHHHHHHHHhh--HHHHHHHHHhccCCCC
Q 011118          419 ESDRCVVGGVQNSLQSTM--DLMAYTMGIIISNPQD  452 (493)
Q Consensus       419 ~~~rG~v~gv~~sl~~~f--~l~~~~~~ii~~~p~~  452 (493)
                      +++|++..|+.+++.+..  -++..+.|.+...-+.
T Consensus       323 ~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~  358 (382)
T TIGR00902       323 GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA  358 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            999999999887665554  5678888888876653

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.45  E-value=2.3e-10  Score=116.07  Aligned_cols=333  Identities=12%  Similarity=0.014  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011118           35 MWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLK  114 (493)
Q Consensus        35 ~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~  114 (493)
                      .|....|.+..+ ++-|....+.......+...+..++.|.+.||++||+++..+.+...+.    +.  .....     
T Consensus        21 ~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~----~~--~~~~~-----   88 (377)
T TIGR00890        21 TWTLLAPPLGRY-FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG----FT--FYAIA-----   88 (377)
T ss_pred             hhhhHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH----HH--HHHHH-----
Confidence            455566664443 4557888899999999999999999999999999999988776433332    11  11111     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhh
Q 011118          115 STNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSL  194 (493)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~  194 (493)
                       .++..+....   .+.|............. -.+|.    +    ++..++++.....-....+++|.+.+.+.+..|.
T Consensus        89 -~~~~~~~~~~---~~~g~~~~~~~~~~~~~-~~~~~----~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  155 (377)
T TIGR00890        89 -DSLAALYLTY---GLASAGVGIAYGIALNT-AVKWF----P----DKRGLASGIIIGGYGLGSFILSPLITSVINLEGV  155 (377)
T ss_pred             -HHHHHHHHHH---HHHhHHHHHHHHhHHHH-HHHHc----C----cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccH
Confidence             1222221111   12222222221111222 23454    2    2346667777666666665555555555565666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHH
Q 011118          195 QASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKI  274 (493)
Q Consensus       195 ~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (493)
                      +....+..+...+..+.-+.++     +.|+.+    ++ +   + + ++                . .+ +++      
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~-----~~~~~~----~~-~---~-~-~~----------------~-~~-~~~------  196 (377)
T TIGR00890       156 PAAFIYMGIIFLLVIVLGAFLI-----GYPPGQ----LI-K---T-N-IE----------------V-SV-KDY------  196 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhe-----ecCchh----cc-c---c-C-cc----------------c-ch-hhh------
Confidence            6655444443333333222211     112100    00 0   0 0 00                0 00 000      


Q ss_pred             HhhhccccccccceeeecccchHHHHHHH-HHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011118          275 IDWISNAPCVGAWQVYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQS  353 (493)
Q Consensus       275 ~~~l~~~~~~~g~~~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~  353 (493)
                                 .++..+++|.++...... +.++......+....|.++.|.++...+.+.+...++++.++++.+++.+
T Consensus       197 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  265 (377)
T TIGR00890       197 -----------TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSD  265 (377)
T ss_pred             -----------hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       011122334333222222 22222233444556677788999999999999999999999999999999


Q ss_pred             hhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHH-H--HHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHH
Q 011118          354 RISTLRTGLWSIWSQWFCLLICVASIWIHNSLVA-A--YMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQN  430 (493)
Q Consensus       354 riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s-~--~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~  430 (493)
                      |+|..+...++.....   ...+...+.+..... .  ..++.+..   .|  ........+.+|..|+++||+..|..+
T Consensus       266 r~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~---~g--~~~~~~~~~~~~~~~~~~~~~~~g~~~  337 (377)
T TIGR00890       266 KIGRQKTMSIVFGISA---VGMAAMLFIPMLNDVLFLATVALVFFT---WG--GTISLFPSLVSDIFGPANSAANYGFLY  337 (377)
T ss_pred             HHhhhhhhhHHHHHHH---HHHHHHHHcccchhHHHHHHHHHHHHH---hc--cchhccHHHHHHHhhhhhhhhHhHHHH
Confidence            9997666554443111   111111222211111 1  11112221   11  112334567889999999999999999


Q ss_pred             HHHHhh-HHHHHHHHHhccCC
Q 011118          431 SLQSTM-DLMAYTMGIIISNP  450 (493)
Q Consensus       431 sl~~~f-~l~~~~~~ii~~~p  450 (493)
                      +.+++. -++.++.+.+...-
T Consensus       338 ~~~~~g~~~~~~~~g~l~~~~  358 (377)
T TIGR00890       338 TAKAVAGIFGGLIASHALTEI  358 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            988887 67777777776543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.45  E-value=1e-10  Score=123.12  Aligned_cols=364  Identities=11%  Similarity=0.004  Sum_probs=190.5

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHH
Q 011118           16 SFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNL   95 (493)
Q Consensus        16 ~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~   95 (493)
                      ++.++.++...++-..+--++.=-.|.++.+-++-|....++......+...+++++.|.+.||.+|||++..+..+-.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            35788888888888887777777777777776777999999999999999999999999999999999998665422111


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      .    ... ........ .......+. .+    +.+.....+..+.... -.+|....    . ++....-...|....
T Consensus        89 ~----~~~-~~~~~~~~-~~~~~~~~~-~~----~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~g~~~g~~~~~~~  151 (420)
T PRK09528         89 L----FGP-FFIYVFAP-LLQYNILLG-AI----VGGIYLGFGFLAGAGA-IEAYIERV----S-RRSGFEYGRARMWGS  151 (420)
T ss_pred             H----HHH-HHHHHHHH-HHHHHHHHH-HH----HHHHHhhhhhccchhh-hhhHHHHH----H-hhccccchhhHHhhh
Confidence            1    000 00000000 000000110 11    0111111111111112 23343111    1 122223356677788


Q ss_pred             HHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccc
Q 011118          176 TCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESL  255 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      ++..+||.++|.+... +.+....    ...+..++-....   +...|+.+++.+.+ +   +   ++.          
T Consensus       152 ~g~~i~~~~~g~l~~~-~~~~~f~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~---~---~~~----------  206 (420)
T PRK09528        152 LGWALCAFIAGILFNI-NPQINFW----LGSGSALILLVLL---FFAKPDAPSTAKVA-N---A---LGA----------  206 (420)
T ss_pred             HHHHHHHHHHHHHHhc-CchHhHH----HHHHHHHHHHHHH---hcccccccchhhhc-c---c---hhc----------
Confidence            8999999999999763 4433222    1222222211111   11222211100000 0   0   000          


Q ss_pred             cccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHH----HcCCCchHH
Q 011118          256 LSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLE----WEGIPAYII  330 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~----~~gls~~~i  330 (493)
                          +....  .                .+.++..++||.++..+...+.. +..-.++..+..|+.    +.+.+...+
T Consensus       207 ----~~~~~--~----------------~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (420)
T PRK09528        207 ----NASAV--S----------------LKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVF  264 (420)
T ss_pred             ----ccccc--c----------------HHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH
Confidence                00000  0                01112234555544333222222 111123334555554    347788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICV-ASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSV  409 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v-~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~  409 (493)
                      |.+.++..+....+.+..+++.+|+|..|...++...    ...+. ...+.+++ +...   ....+..++.-.+..+.
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l----~~~~~~l~~~~~~~-~~~~---~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTI----MAVRIIGSGFATGP-LEVS---ILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHH----HHHHHHHHHhcccH-HHHH---HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988765544431    11111 11223322 2111   11222223333445566


Q ss_pred             hhhhhccCCCCcchhHHHH-HHHHHHhh-HHHHHHHHHhccCCC
Q 011118          410 IQQMQDLVPESDRCVVGGV-QNSLQSTM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       410 ~~l~Qe~vp~~~rG~v~gv-~~sl~~~f-~l~~~~~~ii~~~p~  451 (493)
                      .+++++..|++.+++..++ .++...+- -++..+.|.+.+..+
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G  380 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG  380 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7889999999999987655 33333333 566777777766543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.44  E-value=2.9e-10  Score=116.13  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=88.9

Q ss_pred             hhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHH--HHHHhhcchHH
Q 011118          310 LSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLIC--VASIWIHNSLV  386 (493)
Q Consensus       310 L~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~--v~~~~~~~~~~  386 (493)
                      ..+...+..|.+ ..|.++...|.......++++++..+.+++.+|+|..|.......   ++...+  ....+...+  
T Consensus       236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~--  310 (394)
T TIGR00883       236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV---LAALLAVPLLMALLDSG--  310 (394)
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH---HHHHHHHHHHHHHhcCC--
Confidence            345566778885 589999999999999999999999999999999997665443322   111111  111111111  


Q ss_pred             HHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHH-hh-HHHHHHHHHhccCCCC
Q 011118          387 AAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQS-TM-DLMAYTMGIIISNPQD  452 (493)
Q Consensus       387 s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~-~f-~l~~~~~~ii~~~p~~  452 (493)
                      +...+.....+..++.-.+....+.+++|.+|+++||+..|....+.+ .. -++.++.+.+...-+.
T Consensus       311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~  378 (394)
T TIGR00883       311 SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD  378 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence            111122222333344445567778999999999999999998655544 33 3667777777665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.40  E-value=6.3e-10  Score=116.94  Aligned_cols=350  Identities=15%  Similarity=0.106  Sum_probs=191.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc----ch-hHHHHHHHHHHHHHHHH
Q 011118           25 AHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL----TY-VKVLQIWLVTQNLSFIV   99 (493)
Q Consensus        25 s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~----~R-~~v~~~~~~~q~~~v~~   99 (493)
                      +++..+.-..+...-.+.++...+.-|...++..-....+...+..|.+|.+.||.    .| |+.+..+.+.-    ++
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~----~i   82 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF----SI   82 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH----HH
Confidence            44555555666665566667777777888889999999999999999999999984    33 44554443211    22


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHh
Q 011118          100 AGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKL  179 (493)
Q Consensus       100 s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l  179 (493)
                      ++.+  +...++........++....   .+.+....+.++.....     .+.++.+ + ++.+++|+.-+....+..+
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~al-----~~~~~~~-~-~~R~~~~~~~~~~~~~g~~  150 (437)
T TIGR00792        83 VLVL--LFTTPDFSATGKLVYAYITY---ILLGLFYSFVNIPYWSL-----VPAITLD-P-RERESLSTFRRFGATLGGL  150 (437)
T ss_pred             HHHH--HHhCCCCCcchHHHHHHHHH---HHHHHHHHhhcccHhhC-----cccccCC-H-HHHHHHHHHHHHHHHHHHH
Confidence            2221  11222110111111211111   12334444444432222     4555443 3 5678888887777777777


Q ss_pred             hhhHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccc
Q 011118          180 LAPAITGFIISFV-------SLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRER  252 (493)
Q Consensus       180 ~gP~~~G~l~~~~-------s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
                      +++.+++.+....       +.+....+.++.-.+..+   ++    +...||..+   +.     + + ++     +  
T Consensus       151 l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~---~~----~~~~~e~~~---~~-----~-~-~~-----~--  206 (437)
T TIGR00792       151 LVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI---IC----FFGTKERYS---EI-----P-K-NI-----E--  206 (437)
T ss_pred             HHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH---HH----HcCCEecCC---CC-----C-c-cc-----c--
Confidence            7777777776533       333333322222222221   11    112332110   00     0 0 00     0  


Q ss_pred             ccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHH
Q 011118          253 ESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYII  330 (493)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~i  330 (493)
                             ++.+                   .++.++..+++|.++..+...+++... ..+.....-|.+. .| ++...
T Consensus       207 -------~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  259 (437)
T TIGR00792       207 -------KKLS-------------------LKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELF  259 (437)
T ss_pred             -------cCCC-------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHH
Confidence                   0000                   123344456777777666555555332 2233344445443 45 56778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      +.+.++..+++++++.+.+++.+|+|..++-.++...   +....+...+.+.+.   ..+....++..+|.-.......
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILL---MVLGYLIFFFAGSNL---PLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH---HHHHHHHHHHcchhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999987776655432   111111212222121   1222233333455555566677


Q ss_pred             hhhhccCC-------CCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          411 QQMQDLVP-------ESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       411 ~l~Qe~vp-------~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      .++++.+|       ++.+|+.+|+.+..+++. .++..+.+.+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777765       456899999998888877 67777777664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.38  E-value=9.1e-11  Score=122.69  Aligned_cols=386  Identities=10%  Similarity=-0.044  Sum_probs=184.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           25 AHFLARWGARMWEFSVGLYMISVWP-------DSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        25 s~~lS~~Gdr~~~Fa~~L~lv~l~~-------~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      +.++..++.-....+.|.......-       .+....+.......+...+.+++.|.+.||++||+++..+.+...+. 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~-  114 (481)
T TIGR00879        36 GGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIG-  114 (481)
T ss_pred             HHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHH-
Confidence            3344444555555566654444322       22567788888899999999999999999999999988876544333 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                         +.+  .....   ...+...+...   -.+.|.......+... +.-.||.    .+   ++..+.++.....-.+.
T Consensus       115 ---~~~--~~~~~---~~~~~~~~~~~---r~l~G~~~~~~~~~~~-~~i~~~~----~~---~~r~~~~~~~~~~~~~G  175 (481)
T TIGR00879       115 ---AIL--MGLAA---FALSVEMLIVG---RVLLGIGVGIASALVP-MYLSEIA----PK---ALRGALTSLYQLAITFG  175 (481)
T ss_pred             ---HHH--HHHhc---cccchHHHHHH---HHHHHhhhhHHHhHHH-HHHHccC----Ch---hhhhhhhhHHHHHHHHH
Confidence               221  11111   11111111111   1223333333333322 2334555    22   45677788887778888


Q ss_pred             HhhhhHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCC-CcccccccCCccccc
Q 011118          178 KLLAPAIT---GFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSM-PIDMEQSTSMPRERE  253 (493)
Q Consensus       178 ~l~gP~~~---G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (493)
                      .+++|.++   +......+.+....+....-.+..    .+..    ..|+.......+..+++ .+...+..+.     
T Consensus       176 ~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~----~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----  242 (481)
T TIGR00879       176 ILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF----LGLF----FLPESPRWLVGKGRVEEARKSLARLRGT-----  242 (481)
T ss_pred             HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH----HHHh----cCCCChHHHHHcCChHHHHHHHHHHhCC-----
Confidence            88888888   555455666655433222211111    1111    12321110000000000 0000000000     


Q ss_pred             cccccccchhHHHHHHHHHHHHhhhccccccccceeeec------ccchHHHHHHHHHHHHhh-hhhhHHHHHHHHcCCC
Q 011118          254 SLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLK------QEVVLPGVSLALLFFTVL-SFGTLMTATLEWEGIP  326 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~------q~v~la~~alalLy~tVL-~f~~l~~~yl~~~gls  326 (493)
                         .+++....+..+....+...+...  ....|+..++      .+.+...+...+.++... .+......++.+.|++
T Consensus       243 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  317 (481)
T TIGR00879       243 ---SGEDKELLDELELIDIKRSIEKRS--VQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVS  317 (481)
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHhh--ccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCC
Confidence               000000000000000000000000  0111222222      222222222222222211 1233344455578999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHhhhch
Q 011118          327 AYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSL-----VAAYMLMVGVATSRLG  401 (493)
Q Consensus       327 ~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~-----~s~~~l~~gi~~SR~G  401 (493)
                      +...+.......++++.++++.+++.+|+|..+...++.....++........+...+.     ....+........-+|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (481)
T TIGR00879       318 TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA  397 (481)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHH
Confidence            98889999999999999999999999999977766555442222221111111111110     1111111111111111


Q ss_pred             hhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          402 LWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       402 Lw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                       .++......+.+|..|+++||+..|+.+...++. -++..+.+.+...
T Consensus       398 -~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       398 -MGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             -ccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1223444556689999999999999999988887 4555566666554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.34  E-value=1e-08  Score=106.72  Aligned_cols=347  Identities=14%  Similarity=0.010  Sum_probs=181.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHHHHhhhccceee-ecccchhHHHHHHHHHHHHHHHHHHHH
Q 011118           27 FLARWGARMWEFSVGLYMISVWPDSLLFAAIYG--AVESASIALFGPIVGHW-VDKLTYVKVLQIWLVTQNLSFIVAGVS  103 (493)
Q Consensus        27 ~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~g--l~~~l~~llfg~~vG~~-vDr~~R~~v~~~~~~~q~~~v~~s~~~  103 (493)
                      +.+=..-.++.-.+|.++.+. .-|.-..++++  ..-.....+.+|+++++ .||.+|||..+..  .|.+. ++ +..
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~--~~~~~-~~-~~~   85 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLP--MQCLV-SA-CLA   85 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHH--HHHHH-HH-HHH
Confidence            444455677888889988876 45777778875  34488888999999774 7888888875444  23322 11 111


Q ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhH
Q 011118          104 VITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPA  183 (493)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~  183 (493)
                       .+.... . ......++..+..   +.+......+++.+.. ..||.    ++   ++....|+...---....++|+.
T Consensus        86 -~~~~~~-~-~~~~~~~~~~~~~---~~~~~~a~~d~~~d~~-~~~~~----~~---~~~~~~~~~~~~g~~lG~~~g~~  151 (390)
T TIGR02718        86 -SLALVG-P-DVAGAGWAVGLLA---CASLASATQDIATDGM-AAEHF----NG---RTLAKGNAVQIAGVMIGFFGGGA  151 (390)
T ss_pred             -HHHcCC-c-chhhHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHhC----CH---hhhhHHHHHHHHHHHHHHHHHHH
Confidence             111111 1 1111112211111   1112222223322211 11121    11   34455555543333455566666


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchh
Q 011118          184 ITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNA  263 (493)
Q Consensus       184 ~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (493)
                      ..|.+.+..|.+....+.++...+..+.-+    .   ..|+..+    +     +   ++     +            .
T Consensus       152 ~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~----~---~~~~~~~----~-----~---~~-----~------------~  195 (390)
T TIGR02718       152 GTLVLFGKFGQRPAFLLVACVPLASLVCVL----W---LKDRAVA----S-----P---EA-----P------------L  195 (390)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH----H---cCCCCcC----c-----c---cc-----c------------h
Confidence            666777778877766555554444333311    1   1111000    0     0   00     0            0


Q ss_pred             HHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHH-hhhhhhHHHHHHHHcCCCchHHHHHHHHHH-HHH
Q 011118          264 ELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT-VLSFGTLMTATLEWEGIPAYIIGIARGISA-TIG  341 (493)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~t-VL~f~~l~~~yl~~~gls~~~iG~~r~~~a-v~G  341 (493)
                      .  .                ...++..+|+|.++..+...+++.. .....+....|++++|+++..+|...+... +.+
T Consensus       196 ~--~----------------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~  257 (390)
T TIGR02718       196 A--R----------------RASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTV  257 (390)
T ss_pred             h--h----------------HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHH
Confidence            0  0                0112234566767766666666643 334445667889999999999999998876 467


Q ss_pred             HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHH-H-HhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhh-hhccCC
Q 011118          342 IAATILYPILQSRISTLRTGLWSIWSQWFCLLICVA-S-IWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQ-MQDLVP  418 (493)
Q Consensus       342 llgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~-~-~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l-~Qe~vp  418 (493)
                      +.|.++.+++.+|+|..|...++...+.+....... . .+..........   ...+..++.-......... ++...|
T Consensus       258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~  334 (390)
T TIGR02718       258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS---CSAFGSLITGITSVAIYTAFMRFAGD  334 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            788999999999999888776655433211111111 1 111111111111   1111111111112222333 333334


Q ss_pred             CCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          419 ESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       419 ~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      ++++|+..+..+++.++. -++..+.|.+...
T Consensus       335 ~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~  366 (390)
T TIGR02718       335 GDQAGTDVTAVQSTRDLGELIASSIAGYLTDR  366 (390)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999998887 7777888877653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.34  E-value=2.5e-09  Score=113.22  Aligned_cols=184  Identities=14%  Similarity=0.060  Sum_probs=110.5

Q ss_pred             eecccchHHHHHHHHHHHHhh-hhhhHHHHHHHHcCCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Q 011118          290 YLKQEVVLPGVSLALLFFTVL-SFGTLMTATLEWEGIPA--------YIIGIARGISATIGIAATILYPILQSRISTLRT  360 (493)
Q Consensus       290 y~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~~gls~--------~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~  360 (493)
                      ..|+|.+...+...++..... ........|..+.|.++        ...|...++..+.++.+.+..+++.+|+|..+.
T Consensus       204 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~  283 (418)
T TIGR00889       204 LFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV  283 (418)
T ss_pred             HhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            345665554444444432221 22234456776666554        788999999999999999999999999998877


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHH-HHHhh-HH
Q 011118          361 GLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNS-LQSTM-DL  438 (493)
Q Consensus       361 g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~s-l~~~f-~l  438 (493)
                      ..++.....++.  ++. ....+.......+..+.++..++.-.+..+...++.|..|+++||+..|..+. .+.+. -+
T Consensus       284 l~~~~~~~~v~~--~l~-~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       284 MLLSLVAWALRF--GFF-AYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHHHHH--HHH-HHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            666554221111  111 11111122223333334444444445577888899999999999999999974 44434 67


Q ss_pred             HHHHHHHhccCCCC---chH--HHHHHHHHHHHHHHHHHHHHH
Q 011118          439 MAYTMGIIISNPQD---FWK--LILISVIVVTLAAILYTFHLY  476 (493)
Q Consensus       439 ~~~~~~ii~~~p~~---F~~--l~~~S~~~V~~~~~l~~~~~~  476 (493)
                      +..+.|.+.+..+.   ++|  .+.+.......+..++..+.+
T Consensus       361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77888888776443   333  344444444444444444444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03699 putative transporter; Provisional

Probab=99.33  E-value=1e-08  Score=107.11  Aligned_cols=361  Identities=12%  Similarity=0.058  Sum_probs=193.8

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |.++..+.+.++...-..+.....|-+.. -++-|....+.......+...+..++.|.+.||++|||++..+.+...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45667777777776666667777777554 45657778888888888889999999999999999999988776443332


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.+  . ..    . .++..+....   .+.|.......+.....+ -||.    ++   ++....+......-..
T Consensus        86 ----~~l--~-~~----~-~~~~~~~~~~---~l~G~~~g~~~~~~~~~i-~~~~----~~---~~r~~~~~~~~~~~~~  142 (394)
T PRK03699         86 ----VAG--L-MF----S-HSLALFSIAM---FVLGVVSGITMSIGTFLI-THVY----EG---KQRGSRLLFTDSFFSM  142 (394)
T ss_pred             ----HHH--H-HH----c-chHHHHHHHH---HHHHHhhHhhccchhHHh-hhhc----cc---chHHHHHHHHHHHHHH
Confidence                111  1 11    1 1222221111   122333332222222221 1222    22   2233444444444456


Q ss_pred             HHhhhhHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccc
Q 011118          177 CKLLAPAITGFIIS-FVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESL  255 (493)
Q Consensus       177 ~~l~gP~~~G~l~~-~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      .-.++|.+.+.++. ..|.+....+..+...+..+    +.  .+.+.|++.++   +     +   ++           
T Consensus       143 g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~----~~--~~~~~p~~~~~---~-----~---~~-----------  194 (394)
T PRK03699        143 AGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI----LT--LFSEFPALGKH---A-----P---KA-----------  194 (394)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----HH--HhcCCcccccc---C-----c---cc-----------
Confidence            67888999888765 45777665443443333221    11  12233432100   0     0   00           


Q ss_pred             cccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHHHHH
Q 011118          256 LSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIGIA  333 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~iG~~  333 (493)
                           +..   +               .++.|     +|.++......++|+.. .++.+.+..|+++ .|+++.+.|.+
T Consensus       195 -----~~~---~---------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~  246 (394)
T PRK03699        195 -----DKP---V---------------AKEKW-----GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNL  246 (394)
T ss_pred             -----cCc---c---------------ccccC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHH
Confidence                 000   0               01112     12233222233444322 3566778889975 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHhhhchhhhhhhhhhhh
Q 011118          334 RGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS-LVAAYMLMVGVATSRLGLWMFDLSVIQQ  412 (493)
Q Consensus       334 r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~-~~s~~~l~~gi~~SR~GLw~fDl~~~~l  412 (493)
                      .+.-.+++.+|.++.+++.+|+|..|........   +..........+.. ......+..|....  +.+   .....+
T Consensus       247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~---~~~~~~  318 (394)
T PRK03699        247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGL---ALVLMYLFVNTDDPSHLLYAILGLGFFSS--AIY---TTIITL  318 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH---HHHHHHHHHHcCCchHHHHHHHHHHHHHH--HHH---HHHHHH
Confidence            9998889999999999999999987765543321   11111111122222 22223333333211  111   222334


Q ss_pred             hhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHH
Q 011118          413 MQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTL  466 (493)
Q Consensus       413 ~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~  466 (493)
                      ..+..|++ +++..|...+..++. -++..+.+.+....+............+.+
T Consensus       319 ~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (394)
T PRK03699        319 GSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV  372 (394)
T ss_pred             HHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence            44445544 556666666655555 567777787777666555555444444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.33  E-value=2.6e-09  Score=111.49  Aligned_cols=363  Identities=11%  Similarity=0.001  Sum_probs=193.6

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |+++++...+++=..+--++.=-.|.++.+.++-+...+++....-.+...+.+++.|.+.||.+|||.+..+.+.-.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            57788878888888887777777788888878888899999999999999999999999999999999998775443221


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +..+......   .......+....+...+.+.......++.     .+|++...+    ++ .+.....|.....
T Consensus        82 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~----~~-~~~~g~~~~~~~~  144 (396)
T TIGR00882        82 ----FAPFFIYVFG---PLLQSNILVGAIVGGLYLGFVFSAGAGAI-----EAYIEKVSR----NS-NFEYGKARMFGCV  144 (396)
T ss_pred             ----HHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhccchhhH-----HHHHHHhhh----hc-ccccchhhhhccc
Confidence                1110111110   00000011111111111222222222221     233322111    11 1233467777789


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      +..+||.++|.+.+ .+.+.......+.-.+..+.    ...   ..|+..++  ++.+     +..+.           
T Consensus       145 g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~----~~~---~~~~~~~~--~~~~-----~~~~~-----------  198 (396)
T TIGR00882       145 GWALCASIAGILFS-IDPQIVFWLGSGFALILMLL----LMF---AKPKAPSS--ATVA-----NALGA-----------  198 (396)
T ss_pred             HHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHH----HHH---hCCCCchh--hhhh-----ccccc-----------
Confidence            99999999998876 46554433222322322211    111   12322111  0000     00000           


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH----cCCCchHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW----EGIPAYIIG  331 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~----~gls~~~iG  331 (493)
                       +++...   .                 +.++..+++|.++..+...+.. ...-.++..+..|+++    .|.+...+|
T Consensus       199 -~~~~~~---~-----------------~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g  257 (396)
T TIGR00882       199 -NASAFS---L-----------------KLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFG  257 (396)
T ss_pred             -ccCCCC---H-----------------HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence             000000   0                 0112233455443322222222 1222344456677664    366778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          332 IARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVAS-IWIHNSLVAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       332 ~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~-~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      ...+++++.+..+....+++.+|+|..|.-.++..    +....... .+.+.+....    ....+..++.-.......
T Consensus       258 ~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~----l~~l~~~~~~~~~~~~~~~----~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       258 YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGT----IMSVRIIGSSFATTALEVV----ILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH----HHHHHHHHHHhcCChHHHH----HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876655443    11212221 2222222111    112222222222233455


Q ss_pred             hhhhccCCCCcchhHHHH-HHHHHHh-hHHHHHHHHHhccCCC
Q 011118          411 QQMQDLVPESDRCVVGGV-QNSLQST-MDLMAYTMGIIISNPQ  451 (493)
Q Consensus       411 ~l~Qe~vp~~~rG~v~gv-~~sl~~~-f~l~~~~~~ii~~~p~  451 (493)
                      ++.++..|++.+++..+. .++...+ .-++..+.|.+...-+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G  372 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG  372 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence            677888888888886665 3333333 3777788888876543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.32  E-value=9.6e-10  Score=112.35  Aligned_cols=346  Identities=13%  Similarity=0.003  Sum_probs=187.8

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |.++..+...+++-.+.-++....|.++.+-++-|....+.......+..++.+++.|.+.||++||+++..+.+.-.+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIP   80 (366)
T ss_pred             CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            35667888888888888888888886677777888889999999999999999999999999999999988776433332


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.+  ....    .. ++..+....   .+.|..+....++ . ..-.||.    ++   ++..+.++.....-..
T Consensus        81 ----~~~--~~~~----~~-~~~~~~~~~---~~~g~~~~~~~~~-~-~~~~~~~----~~---~~r~~~~~~~~~~~~~  137 (366)
T TIGR00886        81 ----CLW--AGLA----VQ-SYSVLLLLR---LFIGIAGGSFASC-M-PWISFFF----PK---KIQGTALGLAAGWGNM  137 (366)
T ss_pred             ----HHH--HHHH----hh-hHHHHHHHH---HHHHHhchhhHhH-H-HHHHHhc----CH---hhhhHHHHHHHHHhHH
Confidence                111  1111    10 222221111   1223333333322 2 2234554    22   4567788887777778


Q ss_pred             HHhhhhHHHHHHHHhh----------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccc
Q 011118          177 CKLLAPAITGFIISFV----------SLQASA-MTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQS  245 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~----------s~~~a~-~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~  245 (493)
                      +..++|.+++.+....          +.+... ....+...+..+    ++.....+.|+-.  +++++.  +.+  ++ 
T Consensus       138 g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~--~~~--~~-  206 (366)
T TIGR00886       138 GGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL----LIFFVGADTPPGK--PATGKL--SFK--GA-  206 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH----HHHHhcccCCccc--ccchhc--ccc--cc-
Confidence            8888888888776532          233222 111122221111    1111111222100  000000  000  00 


Q ss_pred             cCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-c
Q 011118          246 TSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-E  323 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~  323 (493)
                          .      .. ... +  .                .+.++..+++|.++.......++ ....++.+.+..|+++ .
T Consensus       207 ----~------~~-~~~-~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T TIGR00886       207 ----R------WS-VGT-G--A----------------LGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQF  256 (366)
T ss_pred             ----c------cc-ccc-h--h----------------HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                0      00 000 0  0                00111123445444333333333 3334566777788885 7


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHh--hcc--hH-HHHHHHHHHHHhh
Q 011118          324 GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW--IHN--SL-VAAYMLMVGVATS  398 (493)
Q Consensus       324 gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~--~~~--~~-~s~~~l~~gi~~S  398 (493)
                      |+++...|.+.....+.++.|+.+.+++.+|+|..|....+...    ...+.....  ..+  +. .....+....+..
T Consensus       257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (366)
T TIGR00886       257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG----VAMGAFLVVLGLVSPLSLAVFIVLFVALFFFS  332 (366)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH----HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999977665544431    111111111  111  11 1112222222222


Q ss_pred             hchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHh
Q 011118          399 RLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQST  435 (493)
Q Consensus       399 R~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~  435 (493)
                      ..+..    ....+..+..| +++|+++|+.+++.++
T Consensus       333 g~~~~----~~~~~~~~~~~-~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       333 GAGNG----STFALVPHIFR-RATGAVSGLVGAIGNL  364 (366)
T ss_pred             ccccc----hhhhcchhhch-hhcccHHHHHHHhccC
Confidence            22222    23334445455 6999999998887653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.32  E-value=3.5e-09  Score=113.36  Aligned_cols=369  Identities=11%  Similarity=0.064  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHH
Q 011118           21 YLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVA  100 (493)
Q Consensus        21 ~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s  100 (493)
                      .+..+.++..........+.|.+.. -++-|....+.....-.+...+..++.|.+.||++||+++..+.+.-.+...+ 
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~-  110 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMIS-TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLG-  110 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHH-
Confidence            3445555555566667788887554 45567788888888889999999999999999999999987765333222111 


Q ss_pred             HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhh
Q 011118          101 GVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLL  180 (493)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~  180 (493)
                          ..++.. . ...+...   +++.-.+.|..+....++ ...+-.||.+    +   ++..++++.....-.+..++
T Consensus       111 ----~~~~~~-~-~~~~~~~---l~~~r~l~G~~~~~~~~~-~~~~i~~~~~----~---~~rg~a~gi~~~~~~lG~~l  173 (467)
T PRK09556        111 ----FGASLG-S-GSVSLGL---MIALWALSGFFQSTGGPC-SYSTITRWTP----R---RKRGRFLGFWNISHNLGGAG  173 (467)
T ss_pred             ----HHHHHh-c-ccchHHH---HHHHHHHHHHHHhccchH-HHHHHHHHcC----c---cceeeeEEeeecccchhhhH
Confidence                111100 0 1112222   222222345555555555 3345678873    3   34566677665555566666


Q ss_pred             hhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccc
Q 011118          181 APAITGFIISFV---SLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLS  257 (493)
Q Consensus       181 gP~~~G~l~~~~---s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (493)
                      ||.+...+....   +.+....+.++   ++.++-..+ ..+.+..|+-.   +..+    ++  +..++ ..      .
T Consensus       174 ~~~i~~~~~~~~~~~~~~~~f~~~g~---~~~~~~i~~-~~~~~~~p~~~---~~~~----~~--~~~~~-~~------~  233 (467)
T PRK09556        174 AGGVALWGANYFFDGHVIGMFIFPSI---IALIIGFIG-LRYGSDSPEEL---GWGK----AE--EIFGE-PI------S  233 (467)
T ss_pred             HHHHHHHHHHhhccCcchhHHHHHHH---HHHHHHHHH-HHhCCCChhhc---CCCC----hh--hcccC-cc------c
Confidence            666665554432   11111111111   122221111 11112223211   0000    00  00000 00      0


Q ss_pred             cccchhHHHHHHHHHHHHhhhccccccccc-eeeecccchHHHHHHH-HHHHHhhhhhhHHHHHHHH-cCCCchHHHHHH
Q 011118          258 HDENNAELAEKRWRWKIIDWISNAPCVGAW-QVYLKQEVVLPGVSLA-LLFFTVLSFGTLMTATLEW-EGIPAYIIGIAR  334 (493)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~y~~q~v~la~~ala-lLy~tVL~f~~l~~~yl~~-~gls~~~iG~~r  334 (493)
                      +++...+..+.+             ..+.+ +..+++|.+....... +.|....++...++.|+++ .|+++.+.+...
T Consensus       234 ~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~  300 (467)
T PRK09556        234 EEDKETESTDMT-------------KWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTF  300 (467)
T ss_pred             hhhhccccccCc-------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            000000000000             00111 1135666555444333 3333334566778889985 899999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHhhhchhhhhhhhhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLV--AAYMLMVGVATSRLGLWMFDLSVIQQ  412 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~--s~~~l~~gi~~SR~GLw~fDl~~~~l  412 (493)
                      ....+++++|..+.+++..|+|..|...........++  .........+..  .+..+..|...  .|..   ......
T Consensus       301 ~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~---~~~~~~  373 (467)
T PRK09556        301 TLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF--TLGVYQHATSEYMYLASLFALGFLV--FGPQ---LLIGVA  373 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH--HHHHHHhcCcHHHHHHHHHHHHHHH--hhHH---HHHHHH
Confidence            88889999999999999999997665443332111111  111111111221  12333333221  1111   112235


Q ss_pred             hhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHHhcc
Q 011118          413 MQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGIIIS  448 (493)
Q Consensus       413 ~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~ii~~  448 (493)
                      ..|..|+++||+++|+.+...++.  -+...+.|.+..
T Consensus       374 ~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        374 AVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            568999999999999999998863  577788888876

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.29  E-value=1.1e-08  Score=106.32  Aligned_cols=341  Identities=10%  Similarity=0.040  Sum_probs=188.9

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHH
Q 011118           16 SFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNL   95 (493)
Q Consensus        16 ~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~   95 (493)
                      +++...+..++++...+..+..-..|.++.+. +-|...++.......+...+..+..|.+.||.+|||++..+.+.-.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~   83 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE-HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999988865 56888889999989999999999999999999999998776533222


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      .    +..  . ..    . .++..+...   -.+.|.......+.....+-+++     .+   ++..+..+.....-.
T Consensus        84 ~----~~~--~-~~----~-~~~~~l~~~---~~l~G~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~  140 (381)
T PRK03633         84 G----CAG--L-GL----M-VGFWSWLAW---RFVAGIGCAMIWVVVESALMCSG-----TS---RNRGRLLAAYMMVYY  140 (381)
T ss_pred             H----HHH--H-HH----h-ccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhC-----CH---HHHHHHHHHHHHHHH
Confidence            2    111  1 11    1 122222111   12334333333333333322222     12   344555565555566


Q ss_pred             HHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccc
Q 011118          176 TCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESL  255 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      ....+||.+.+.+.+......... . ..  +...    .+.-++.+.|+..           +++ ++           
T Consensus       141 ~g~~~g~~~~~~l~~~~~~~~~~~-~-~~--~~~~----~~~~~~~~~~~~~-----------~~~-~~-----------  189 (381)
T PRK03633        141 LGTVLGQLLVSKVSTELMSVLPWV-T-GL--VLAA----ILPLLFTRILNQQ-----------AEN-HD-----------  189 (381)
T ss_pred             HHHHHHHHHHhcccccccchHHHH-H-HH--HHHH----HHHHHHhcccCCC-----------CCC-CC-----------
Confidence            677777777777655321111100 0 00  0000    0001111222100           000 00           


Q ss_pred             cccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHHcCCCchHHHHHH
Q 011118          256 LSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEWEGIPAYIIGIAR  334 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~~gls~~~iG~~r  334 (493)
                           ...   .    ++                .+++|.++..+...+.+. ....+.+.+..|++++|+++...|.+.
T Consensus       190 -----~~~---~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~  241 (381)
T PRK03633        190 -----STS---I----WP----------------MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWM  241 (381)
T ss_pred             -----CCC---H----HH----------------HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence                 000   0    00                123333333222222221 112233456778888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQ  414 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Q  414 (493)
                      +...++++.+.+..+++.+|+|..+....+.....++.   .. .. +........++.|..     -...-.+.+....
T Consensus       242 ~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~---~~-~~-~~~~~~~~~~l~g~~-----~~~~~p~~~~~~~  311 (381)
T PRK03633        242 ALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGS---IA-ML-SQAAMAPALFILGAA-----GFTLYPVAMAWAC  311 (381)
T ss_pred             HHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHH---HH-Hh-hhHHHHHHHHHHHHH-----HHhHHHHHHHHHH
Confidence            99999999999999999999998766554443222111   11 11 111111111222221     1122355666677


Q ss_pred             ccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          415 DLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       415 e~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      |.+|+++++..++......++- -++..+.|.+...
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~  347 (381)
T PRK03633        312 EKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN  347 (381)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889988888777776554443 5666677766554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.28  E-value=3.1e-08  Score=104.94  Aligned_cols=346  Identities=12%  Similarity=0.070  Sum_probs=169.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCc--hHH----HHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           23 YVAHFLARWGARMWEFSVGLYMISVWPDS--LLF----AAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        23 ~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~s--ll~----~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      +.+.++.-..-.++.++.|.+..+.+|.+  ...    .+++ ....+...+.+...|.+.||++|||++..+.+.-.+.
T Consensus        28 ~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         28 SSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVF-AAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            34577777777788888888777776532  221    1233 2344555588889999999999999998887544333


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.+  ..+.++. ...+......+++.=.+.|.......+... ..-.||.|    +   ++..+.++....--..
T Consensus       107 ----~~~--~~~~~~~-~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~-~~i~e~~p----~---~~rg~~~~~~~~~~~~  171 (432)
T PRK10406        107 ----SLV--IACLPGY-ETIGTWAPALLLLARLFQGLSVGGEYGTSA-TYMSEVAV----E---GRKGFYASFQYVTLIG  171 (432)
T ss_pred             ----HHH--HhhcCCc-hhHHHHHHHHHHHHHHHHHhhhhhhHhhHH-HHHHHhCC----C---CcccHHHHHHHHHHHH
Confidence                111  1111111 000011111122122233433332222322 22345653    2   2223344444433445


Q ss_pred             HHhhhhHHHHHHHH--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCC
Q 011118          177 CKLLAPAITGFIIS--------FVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM  248 (493)
Q Consensus       177 ~~l~gP~~~G~l~~--------~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      ..+++|.+.+.+..        ..|.+....+.++...+.     +++   +...||..+.++++          .    
T Consensus       172 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-----~~~---~~~~~e~~~~~~~~----------~----  229 (432)
T PRK10406        172 GQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-----LWL---RRQLDETSQQETRA----------L----  229 (432)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-----HHH---HhcCCCCchHHHhh----------h----
Confidence            55566655444432        345555543222222221     111   22344422100000          0    


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchH-HHHHHHHH-HHHhhhhhhHHHHHHHH-cCC
Q 011118          249 PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVL-PGVSLALL-FFTVLSFGTLMTATLEW-EGI  325 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~l-a~~alalL-y~tVL~f~~l~~~yl~~-~gl  325 (493)
                                      + +                ...++..++++.+. ..+...+. ++...++..-+..|+.+ .|+
T Consensus       230 ----------------~-~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~  276 (432)
T PRK10406        230 ----------------K-E----------------AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM  276 (432)
T ss_pred             ----------------c-c----------------cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                            0 0                00112222333222 22222222 22222345567778874 799


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hh---cchHHHHHHHHHHHHhhhch
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WI---HNSLVAAYMLMVGVATSRLG  401 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~---~~~~~s~~~l~~gi~~SR~G  401 (493)
                      +....+...++..+.+.++..+.+++.+|+|..|...+...   .+...+.... ..   ..+.....++..+...  .|
T Consensus       277 s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  351 (432)
T PRK10406        277 HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGS---LAALFTVPILSALQNVSSPYAAFGLVMCALLI--VS  351 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH--HH
Confidence            99999999998888888888899999999997665543332   1111111111 11   1111111111111111  11


Q ss_pred             hhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHHh
Q 011118          402 LWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGII  446 (493)
Q Consensus       402 Lw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~ii  446 (493)
                      .  +......+.+|..|++.||+..|+.+++.+..  ....++.+++
T Consensus       352 ~--~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        352 F--YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             H--HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence            1  12234567899999999999999999886652  3333444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=8.9e-09  Score=109.27  Aligned_cols=372  Identities=11%  Similarity=0.059  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHHHhhHH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHH
Q 011118           20 TYLYVAHFLARWGARM----WEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNL   95 (493)
Q Consensus        20 ~~L~~s~~lS~~Gdr~----~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~   95 (493)
                      +..+.+.++......+    +-+..|.+. + .+-|....+.......+...+..+..|.+.||.+||+.+..+.+...+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-E-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHH-H-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            3344444444444333    455667543 4 366777888888888899999999999999999999988776543333


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      .    +.+  ....+ . ...++..+   ++.-.+.|.......+.....+. ||.    ++   ++..+.++.....-.
T Consensus       104 ~----~~~--~~~~~-~-~~~~~~~l---~~~~~l~g~~~g~~~~~~~~~i~-~~~----~~---~~rg~~~~~~~~~~~  164 (438)
T TIGR00712       104 V----MLL--MGFVP-W-ATSSIAIM---FVLLFLNGWFQGMGWPPCGRTMV-HWW----SQ---SERGTIVSIWNCAHN  164 (438)
T ss_pred             H----HHH--Hhccc-c-ccchHHHH---HHHHHHHHHHhhcchHHHHHHHH-Hhc----Cc---ccchhHHHHHHHHHH
Confidence            2    111  11111 0 01111111   11111223333333222222222 454    22   356778888777778


Q ss_pred             HHHhhhhHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          176 TCKLLAPAITGFIIS-FVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~-~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      ....++|.+.+.++. ..+.+.+.....+..++..++-++++    ++.|+-.+.++.++.+   .+.++      .   
T Consensus       165 ~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~------~---  228 (438)
T TIGR00712       165 IGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMM----RDTPQSCGLPPIEEYR---NDYPD------D---  228 (438)
T ss_pred             hHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc----cCCHHhcCCCCchhcc---ccccc------c---
Confidence            888888887776554 34666665544455554443322221    1222110000000000   00000      0   


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGI  332 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~  332 (493)
                           ....++.+.+ .++..           ++..+++|.++........+ ....++....+.|+++ .|+++...|.
T Consensus       229 -----~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~  291 (438)
T TIGR00712       229 -----YNEKAEQELT-AKEIF-----------MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSW  291 (438)
T ss_pred             -----cccccccccc-hHHHH-----------HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHH
Confidence                 0000000000 00000           11235677666665554443 3334566678889986 7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhc--chHHH--HHHHHHHHHhhhchhhhhhhh
Q 011118          333 ARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIH--NSLVA--AYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       333 ~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~--~~~~s--~~~l~~gi~~SR~GLw~fDl~  408 (493)
                      ...+-.+.+++|+++.+++.+|++..|....+...-.. ...++...+..  ...+.  ..++..|.     +.++--..
T Consensus       292 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~  365 (438)
T TIGR00712       292 AYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTL-VTIAVIVYWMNPAGNPLVDMICMIVIGF-----LIYGPVML  365 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHH-----HHccHHHH
Confidence            99998999999999999999999754433322211001 11112222221  11121  11222222     22222222


Q ss_pred             hhhhhhccCCCCcchhHHHHHHHHHHhh-H-HHHHHHHHhccCCC
Q 011118          409 VIQQMQDLVPESDRCVVGGVQNSLQSTM-D-LMAYTMGIIISNPQ  451 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~-l~~~~~~ii~~~p~  451 (493)
                      .....+|..|+++||+..|+.++..+.. . .+.++.+.+....+
T Consensus       366 ~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g  410 (438)
T TIGR00712       366 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  410 (438)
T ss_pred             HHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence            2335678899999999999998887764 3 46688887776544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.27  E-value=2.3e-08  Score=108.21  Aligned_cols=352  Identities=12%  Similarity=0.018  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc-----chhHH-HHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL-----TYVKV-LQIWLVTQNL   95 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~-----~R~~v-~~~~~~~q~~   95 (493)
                      ++.-.+.+-...-+..-..|.++.+. .-++-..+...+ ...+. ++.+..|.++||+     +|||. +..+.   ..
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~-~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~---i~   90 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSL-VGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQ---LL   90 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHH---HH
Confidence            33333444445557777788876654 446666666533 23332 5788999999998     77775 44443   22


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      . +++... .. ...   ...+...+..+.   .+.+......+++ ..+.--||.    ++   ++..+.|+...-.-.
T Consensus        91 ~-~~~~~~-~a-~~~---~~~~l~~l~~~~---~l~~~~~a~~~i~-~~a~~~~~~----~~---~~rg~~~~i~~~g~~  153 (491)
T PRK11010         91 L-LVAIAA-MG-FLE---PGTQLRWLAALA---VVIAFCSASQDIV-FDAWKTDVL----PA---EERGAGAAISVLGYR  153 (491)
T ss_pred             H-HHHHHH-HH-HcC---CcchHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHhc----Ch---hhhHHHHHHHHHHHH
Confidence            2 111111 11 111   112222222221   1223334444444 334455665    22   467888999988888


Q ss_pred             HHHhhhhHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          176 TCKLLAPAITGFIIS-FVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~-~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      +..++||.+.+.+.+ ..|.+....+.++...+.++.    ..    ..||..++  ++     +   ++          
T Consensus       154 lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~----~~----~~~e~~~~--~~-----~---~~----------  205 (491)
T PRK11010        154 LAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA----TL----LAPEPTDT--IP-----V---PK----------  205 (491)
T ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH----HH----hcCCCccc--cc-----c---cc----------
Confidence            899999999999988 468777665444443333221    11    12332100  00     0   00          


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHH-HcCCCchHHHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLE-WEGIPAYIIGI  332 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~-~~gls~~~iG~  332 (493)
                            .. .  + .             ..+.++.++++|..+..+...++|. ........+..|+. ..|+++..+|.
T Consensus       206 ------~~-~--~-~-------------~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~  262 (491)
T PRK11010        206 ------TL-E--Q-A-------------VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGL  262 (491)
T ss_pred             ------ch-h--h-h-------------HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence                  00 0  0 0             0111222334444443344444443 22233445667776 58999999999


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhh
Q 011118          333 AR-GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQ  411 (493)
Q Consensus       333 ~r-~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~  411 (493)
                      .. ..+.++++.|+++.+++.+|+|..|....+...+.++..........+.+.....   ..+.+..+..-........
T Consensus       263 ~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~---~~~~l~~~~~g~~~~~~~a  339 (491)
T PRK11010        263 VNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG---AAVFFENLCGGMGTAAFVA  339 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            98 5888999999999999999999877665544433322211111111221221111   1111111110111233467


Q ss_pred             hhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCC
Q 011118          412 QMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNP  450 (493)
Q Consensus       412 l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p  450 (493)
                      +.++.+|++.+|+..|..+++.++. -++..+.|.+...-
T Consensus       340 ~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~  379 (491)
T PRK11010        340 LLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH  379 (491)
T ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7788889999999999888888776 44666777776543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=5.3e-08  Score=103.23  Aligned_cols=361  Identities=9%  Similarity=0.010  Sum_probs=181.3

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchH----HHHHHHHHH-HHHHHhhhccceeeecccchhHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLL----FAAIYGAVE-SASIALFGPIVGHWVDKLTYVKVLQIWLV   91 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll----~~sv~gl~~-~l~~llfg~~vG~~vDr~~R~~v~~~~~~   91 (493)
                      +..-.++.+.++....-....++.|.+..+..+...-    ..+++.+.. .+...+.+.+.|.+.||++|||++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            3455667777777777778888999877777554322    122222222 22223446778999999999999988764


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHH
Q 011118           92 TQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIR  171 (493)
Q Consensus        92 ~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mr  171 (493)
                      .-.+.    +.+  ..+.++. ...+......+++.-.+.|.......++. ...-.||.|    +   ++..+.++...
T Consensus        95 ~~~~~----~~l--~~~~~~~-~~~~~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p----~---~~rg~~~~~~~  159 (434)
T PRK15075         95 IMASG----TLL--IAFVPGY-ATIGLAAPLLVLLGRLLQGFSAGVELGGV-SVYLAEIAT----P---GRKGFYTSWQS  159 (434)
T ss_pred             HHHHH----HHH--HHhCCcH-HHHHHHHHHHHHHHHHHhhccccccHHHH-HHHHHhhCC----c---ccchHHHHHHH
Confidence            33222    221  1111110 00000000011111122233332222221 233446653    3   45677788877


Q ss_pred             hHHHHHHhhhhHHHHHHHH--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccc
Q 011118          172 RIDLTCKLLAPAITGFIIS--------FVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDME  243 (493)
Q Consensus       172 riDl~~~l~gP~~~G~l~~--------~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~  243 (493)
                      ......-.+||.+++.+..        ..|.+....+    +.+..++    +..+++..||-.+..+++     +   +
T Consensus       160 ~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~----~~~~~~~----~~~~~~~~~e~~~~~~~~-----~---~  223 (434)
T PRK15075        160 ASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLI----GCLIVPF----IFLIRRSLEETEEFLARK-----H---R  223 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHH----HHHHHHH----HHHHHHhcCCCHHHHHhh-----h---c
Confidence            7788888889988888743        3455544422    2221111    111222333211000000     0   0


Q ss_pred             cccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeeccc-chHHHHHHHHHH-HHhhhhhhHHHHHHH
Q 011118          244 QSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQE-VVLPGVSLALLF-FTVLSFGTLMTATLE  321 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~-v~la~~alalLy-~tVL~f~~l~~~yl~  321 (493)
                      +                      +               ..+-++...+++ .+..++...... .........++.|++
T Consensus       224 ~----------------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  266 (434)
T PRK15075        224 P----------------------S---------------MREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGK  266 (434)
T ss_pred             c----------------------c---------------cccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                      0               000001011111 122222211111 112234455788888


Q ss_pred             H-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch-HHHH--HHHHHHHHh
Q 011118          322 W-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS-LVAA--YMLMVGVAT  397 (493)
Q Consensus       322 ~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~-~~s~--~~l~~gi~~  397 (493)
                      + .|+++.+.+.+.....++++.++.+.+++.+|+|..|.-.++......+..+ ........+ ....  ..++.+.. 
T Consensus       267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-  344 (434)
T PRK15075        267 TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYP-ALSWLVAAPSFARMLAVELWLSFL-  344 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HHHHHHcCCchHHHHHHHHHHHHH-
Confidence            6 7999999998888888999999999999999999766554433211111110 111111111 1111  11222222 


Q ss_pred             hhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHHhccCCC
Q 011118          398 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGIIISNPQ  451 (493)
Q Consensus       398 SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~ii~~~p~  451 (493)
                        .|  .+......+.+|..|+++||+..|...++....  -++.++.+.+....+
T Consensus       345 --~g--~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        345 --YG--SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             --HH--HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence              22  334445567899999999999999876655532  445666666665544

>TIGR00896 CynX cyanate transporter

Probab=99.22  E-value=1.1e-08  Score=104.88  Aligned_cols=325  Identities=13%  Similarity=0.001  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011118           36 WEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKS  115 (493)
Q Consensus        36 ~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~  115 (493)
                      +.-.+|.+ .+-++-|....+.......+...+.+++.|.+.||++|||++..+.+...+.    ..   ....     .
T Consensus        19 ~~~~lp~l-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~----~~---~~~~-----~   85 (355)
T TIGR00896        19 VGPLLPQI-RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAG----IL---IRSA-----P   85 (355)
T ss_pred             CcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHH----HH---HHHh-----c
Confidence            33456664 4455668888899999999999999999999999999999988776432222    11   1111     1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhh--
Q 011118          116 TNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS--  193 (493)
Q Consensus       116 ~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s--  193 (493)
                      ..+..+    +...+.|........+.. .+-+||.+        ++..+.++.....-..+..+||.+++.+.+..+  
T Consensus        86 ~~~~l~----~~~~~~g~g~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~  152 (355)
T TIGR00896        86 GTALLF----AGTALIGVGIAIINVLLP-SLIKRDFP--------QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGH  152 (355)
T ss_pred             cHHHHH----HHHHHHHHHHHHHhccch-HHHHHhCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            111111    111122322222222212 22244531        345677777777777888889999888877543  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHH
Q 011118          194 LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWK  273 (493)
Q Consensus       194 ~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (493)
                      .+.......+...+.      .+.    ..|+.+++         +++.++                      .      
T Consensus       153 w~~~f~~~~~~~~~~------~~~----~~~~~~~~---------~~~~~~----------------------~------  185 (355)
T TIGR00896       153 WQQALAWWALPALLA------LLA----WIPQVRRR---------VAANQT----------------------T------  185 (355)
T ss_pred             HHHHHHHHHHHHHHH------HHH----Hhhhhccc---------cCCCCC----------------------C------
Confidence            333322222211111      111    12221100         000000                      0      


Q ss_pred             HHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          274 IIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQ  352 (493)
Q Consensus       274 ~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~  352 (493)
                               ....++..+++|.++.......++ +...++...+..|+++.|.++...|.+.++..+++++|++..+++.
T Consensus       186 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~  256 (355)
T TIGR00896       186 ---------TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALA  256 (355)
T ss_pred             ---------CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence                     001223334566555433333333 2233455667788888999999999999999999999999999999


Q ss_pred             hhhchhh-hhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhh-hhhhhccCCCCcchhHHHHHH
Q 011118          353 SRISTLR-TGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSV-IQQMQDLVPESDRCVVGGVQN  430 (493)
Q Consensus       353 ~riGl~r-~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~-~~l~Qe~vp~~~rG~v~gv~~  430 (493)
                      +|++-.| ...++.....++.   +...+.+.........     +..+|.-..-... ..+.|+..+++++|+..|..+
T Consensus       257 dr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  328 (355)
T TIGR00896       257 RRVKDQRGIVAVLAVLQLVGL---CGLLFAPMHGLWAWAL-----VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQ  328 (355)
T ss_pred             hhhccchHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHH-----HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            9996443 4444433221111   1112222211111222     2233333333333 334455566778899999888


Q ss_pred             HHHHhh-HHHHHHHHHhccCC
Q 011118          431 SLQSTM-DLMAYTMGIIISNP  450 (493)
Q Consensus       431 sl~~~f-~l~~~~~~ii~~~p  450 (493)
                      ++.++. -++..+.+.+...-
T Consensus       329 ~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       329 SIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            877665 45666666665433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.22  E-value=1.7e-08  Score=108.53  Aligned_cols=358  Identities=11%  Similarity=0.055  Sum_probs=188.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc----ch-hHHHHHHHHHHHHHHH
Q 011118           24 VAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL----TY-VKVLQIWLVTQNLSFI   98 (493)
Q Consensus        24 ~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~----~R-~~v~~~~~~~q~~~v~   98 (493)
                      .+++-...-..+...-.+.|..+...-+...+|..-++..+.-.+..|.+|.+.||.    +| |+-+..+.+...++  
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~--   90 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV--   90 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH--
Confidence            344444444444333356666677777888888888888888899999999999954    55 56665554333222  


Q ss_pred             HHHHHHHHHHhhcccccc-hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           99 VAGVSVITLLFFSSLKST-NFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        99 ~s~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                        ..   ++..++..... .+.++.+.+   ++.+....+.++....     +++.++++ + ++.+++|+.-|-.-.+.
T Consensus        91 --~~---llf~~p~~~~~~~~~~~~~~~---~l~~~~~t~~~ip~~a-----l~~~lt~~-~-~eR~~l~~~~~~~~~ig  155 (473)
T PRK10429         91 --LF---LLFSAHLFEGTAQYVFVCVTY---ILWGMTYTIMDIPFWS-----LVPTLTLD-K-REREQLVPYPRFFASLA  155 (473)
T ss_pred             --HH---HHHcCCCCCccHHHHHHHHHH---HHHHHHHHHHcchHHh-----hhHHhCCC-H-HHHHHHHHHHHHHHHHH
Confidence              11   11222111111 111211111   1223334444444332     26777654 3 67889998844445555


Q ss_pred             HhhhhHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          178 KLLAPAITGFIISFVS---LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~s---~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      .++++.+...+.+..|   ...+........++...+-.++   .+...+|-..          +++.++     +    
T Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~---~~~~~~e~~~----------~~~~~~-----~----  213 (473)
T PRK10429        156 GFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII---TLRNVHEVYS----------SDNQVS-----A----  213 (473)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH---HHcCceecCC----------cccccc-----c----
Confidence            5666666555444332   1111111112222222211111   1112232110          000000     0    


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhh-hhhhHHHHHHHHcCCCchHHHHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVL-SFGTLMTATLEWEGIPAYIIGIA  333 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~~gls~~~iG~~  333 (493)
                         +++..                   ..++.++..++||.++..+...+++.... ...+.+.-|.+...-++...+.+
T Consensus       214 ---~~~~~-------------------~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~  271 (473)
T PRK10429        214 ---EGSHL-------------------TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYY  271 (473)
T ss_pred             ---cccCC-------------------CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHH
Confidence               00000                   02344555568888887777776664332 34444554555433467788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          334 RGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIW---IHNSLVAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       334 r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~---~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      .+..++.++++..+.+++.||+|-.++-.++...   +...++...+   .+..  ....++...++..+|.-.+.....
T Consensus       272 ~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~i~~~l~g~~~~~~~~~~~  346 (473)
T PRK10429        272 LSYAGAANLVTLILFPRLVKSLSRRILWAGASIF---PVLSCGVLLLMGLAAPH--NALLIVIAGILLNIGTALFWVLQV  346 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH---HHHHHHHHHHHhccCch--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999988876655542   1211111111   1211  122233344445566666778888


Q ss_pred             hhhhccCCCC--cch-----hHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          411 QQMQDLVPES--DRC-----VVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       411 ~l~Qe~vp~~--~rG-----~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      .+++|.+|++  +.|     .++|.+...+.+. .++..+.+.+.
T Consensus       347 am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        347 IMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999998843  234     4777777766666 66666666543

>PRK09848 glucuronide transporter; Provisional

Probab=99.21  E-value=3.5e-08  Score=104.91  Aligned_cols=358  Identities=10%  Similarity=0.002  Sum_probs=186.6

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc----chhH-HHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL----TYVK-VLQI   88 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~----~R~~-v~~~   88 (493)
                      .+.+....+-.+++..+.+..+...-++.++.....-+...+|...+...+...+.+|.+|.++||.    +||| .+..
T Consensus         5 ~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~   84 (448)
T PRK09848          5 LSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLF   84 (448)
T ss_pred             ccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHH
Confidence            3433333333677777777666544455678888777889999999999999999999999999996    3344 3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhh
Q 011118           89 WLVTQNLSFIVAGVSVITLLFFSSLKS-TNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMN  167 (493)
Q Consensus        89 ~~~~q~~~v~~s~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~N  167 (493)
                      +.    +...+++.+  ....+..... ..+.++...+   .+.++...+..+.....     ...++.++  ++.++.|
T Consensus        85 ~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~al-----~~~~~~~~--~~r~~~~  148 (448)
T PRK09848         85 GT----APLMIFSVL--VFWVPTDWSHSSKVVYAYLTY---MGLGLCYSLVNIPYGSL-----ATAMTQQP--QSRARLG  148 (448)
T ss_pred             HH----HHHHHHHHH--HHhCcCCCCcchHHHHHHHHH---HHHHHHHHHhcccHhhh-----hhhhcCCH--HHHHHHH
Confidence            32    111222221  1112211111 1111111111   12344444555443322     34444432  3445544


Q ss_pred             hHHHhH------HHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcc
Q 011118          168 SIIRRI------DLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPID  241 (493)
Q Consensus       168 a~mrri------Dl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~  241 (493)
                      + .|.+      -...-.++|++.+..-+........+. ...-++..+    +....+...||-.+          + +
T Consensus       149 ~-~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~----~~~~~~~~~~e~~~----------~-~  211 (448)
T PRK09848        149 A-ARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMV----LYFICFKSTRENVV----------R-I  211 (448)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHH----HHHHHHcCcEeccC----------C-C
Confidence            3 3442      234555666665532110000000000 011111111    11122223332110          0 0


Q ss_pred             cccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHHHH
Q 011118          242 MEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTATL  320 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~yl  320 (493)
                       ++                ..+                   +.+.++..+++|.++......++++.. ..+.....-|.
T Consensus       212 -~~----------------~~~-------------------~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~  255 (448)
T PRK09848        212 -VA----------------QPS-------------------LKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYV  255 (448)
T ss_pred             -cc----------------CCC-------------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeE
Confidence             00                000                   123344556888887777666666433 34555555566


Q ss_pred             HH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhh
Q 011118          321 EW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSR  399 (493)
Q Consensus       321 ~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR  399 (493)
                      .+ .|.++..-+++...+.++.++++.+.+++.+|+|..+.-.++..   ++...++...+.+..  +...+.....+..
T Consensus       256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~---~~~i~~~~~~~~~~~--~~~~~~~~~~l~g  330 (448)
T PRK09848        256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGAL---LGTCGYLLFFWVSVW--SLPVALVALAIAS  330 (448)
T ss_pred             eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHcCch--hHHHHHHHHHHHH
Confidence            64 78776655555555577788899999999999998887776664   222222222233211  1222333445556


Q ss_pred             chhhhhhhhhhhhhhccCCCCc-------chhHHHHHHHHHHhh-HHHHHHHHH
Q 011118          400 LGLWMFDLSVIQQMQDLVPESD-------RCVVGGVQNSLQSTM-DLMAYTMGI  445 (493)
Q Consensus       400 ~GLw~fDl~~~~l~Qe~vp~~~-------rG~v~gv~~sl~~~f-~l~~~~~~i  445 (493)
                      +|...+......+.++.+|+++       +|..+|+++..+.+. -++..+.+.
T Consensus       331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777778888888888887654       588888887777666 444444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.21  E-value=7.2e-08  Score=104.07  Aligned_cols=134  Identities=9%  Similarity=0.018  Sum_probs=80.9

Q ss_pred             hhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHH
Q 011118          311 SFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAA  388 (493)
Q Consensus       311 ~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~  388 (493)
                      ++...++.|++ ..|+++...+.......++.+++..+.+++.+|+|-.+...++..   .+...++... ......  .
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~---~~~~~~~~~~~~~~~~~--~  342 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV---ALFVLAIPAFILINSNV--I  342 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH---HHHHHHHHHHHHHhCCC--H
Confidence            44456778886 479998888877778888889999999999999997665544332   1111111111 111111  1


Q ss_pred             HHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          389 YMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       389 ~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      ..+..+.++..++.-.+.-....+..|..|++.||+..|+...+.... -++.++.+.+...
T Consensus       343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~  404 (490)
T PRK10642        343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES  404 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222222222222223344556678899999999888766665555 6677777766543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.19  E-value=2.2e-08  Score=105.61  Aligned_cols=382  Identities=12%  Similarity=0.064  Sum_probs=203.5

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQ   93 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q   93 (493)
                      .+.+.+..++...++..+.-..-.++.|. +.+-++-|....+....+-.+...+..++.|.+.||++||+++..+.+.-
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLT-MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHh-hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            34456777888888877777778888885 55566778888888888889999999999999999999999987776433


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhH
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRI  173 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrri  173 (493)
                      .+.    +.+  ..+.      .++..+...   -.+.|..+....++.. .+-.||.+    +   ++..+.++.....
T Consensus        84 ~~~----~~~--~~~~------~~~~~l~~~---r~l~G~~~~~~~~~~~-~~~~~~~~----~---~~rg~~~~~~~~~  140 (412)
T TIGR02332        84 GIA----STA--TMFA------TGPESLYLL---RILVGIAEAGFLPGIL-LYLTFWFP----A---YFRARANALFMIA  140 (412)
T ss_pred             HHH----HHH--HHHh------cCHHHHHHH---HHHHHHHHhhHHHHHH-HHHHHHcC----H---HHHHHHHHHHHHH
Confidence            332    111  1111      112222111   1233444444444433 33467762    2   4567788888877


Q ss_pred             HHHHHhhhhHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----hhhhhhhhccCCCcccc
Q 011118          174 DLTCKLLAPAITGFIIS------FVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPAL----AESSQRRIRRSMPIDME  243 (493)
Q Consensus       174 Dl~~~l~gP~~~G~l~~------~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L----~~~~~~~~~~~~~~~~~  243 (493)
                      -..+.++||.++|.+..      ..|.+....+.++.-++..++    .....+..|+-    .+++++...+ +. +.+
T Consensus       141 ~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~----~~~~~~~~p~~~~~l~~~~~~~~~~-~~-~~~  214 (412)
T TIGR02332       141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM----TWFWLDDSPDKAKWLDEEDKKALKE-MI-DND  214 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH----HhhccCCCcccCCCCCHHHHHHHHH-HH-Hhc
Confidence            78889999999998874      246666654333333332221    11111222210    0000000000 00 000


Q ss_pred             cccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchH-HHHHHHHHHHHhhhhhhHHHHHHHH
Q 011118          244 QSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVL-PGVSLALLFFTVLSFGTLMTATLEW  322 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~l-a~~alalLy~tVL~f~~l~~~yl~~  322 (493)
                      ..     +    .++.++...+ ++.  +          .++-|+..++ |.++ ..+...+.+....++.+-++.|+.+
T Consensus       215 ~~-----~----~~~~~~~~~~-~~~--~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  271 (412)
T TIGR02332       215 QL-----T----LEQPEGAFAH-AAM--P----------QRSMLREIFT-PAIMLYTLAYFCLTNTLSAINIWTPQILQS  271 (412)
T ss_pred             cc-----c----cccccccccc-ccc--c----------HHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            00     0    0000000000 000  0          0011221222 2222 1222222222223455667788876


Q ss_pred             c--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH-HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhh
Q 011118          323 E--GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL-WSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSR  399 (493)
Q Consensus       323 ~--gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~-~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR  399 (493)
                      .  |+++...|.+-+.-.++++.|+++.+++..|++..|... .......+.+  ++. ...+.+......+.    +.-
T Consensus       272 ~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~----~~~  344 (412)
T TIGR02332       272 FNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW--LLA-SATDHNLIQLLGII----MAS  344 (412)
T ss_pred             cCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH--HHH-HhcCCHHHHHHHHH----HHH
Confidence            3  678889999999999999999999999999998544321 1111111111  111 11121221111111    111


Q ss_pred             chhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchH
Q 011118          400 LGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWK  455 (493)
Q Consensus       400 ~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~  455 (493)
                      +|...--.......+|..|+++||++.|+.++..++. -++.++.+.+....+.+.+
T Consensus       345 ~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~  401 (412)
T TIGR02332       345 MGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNS  401 (412)
T ss_pred             HHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCch
Confidence            2221111112244467789999999999999998877 5666777788777665444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.18  E-value=1.1e-08  Score=108.21  Aligned_cols=334  Identities=11%  Similarity=0.104  Sum_probs=189.2

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeec----ccchhH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011118           39 SVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVD----KLTYVK-VLQIWLVTQNLSFIVAGVSVITLLFFSSL  113 (493)
Q Consensus        39 a~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vD----r~~R~~-v~~~~~~~q~~~v~~s~~~~~~~l~~~~~  113 (493)
                      -.+.|..+...=+...++..-++..+.-.+..|.+|.++|    |+.||| -+...-    +..+++..   ++..+...
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~----i~~~~~~~---llf~~~p~   95 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGA----ILLALSFF---LLFSPPPA   95 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhh----HHHHHHHH---Hhhccccc
Confidence            3344455666666777777777888888899999999999    565444 444443    12122222   22211011


Q ss_pred             ccc---hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHH
Q 011118          114 KST---NFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIIS  190 (493)
Q Consensus       114 ~~~---~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~  190 (493)
                      +..   ...++.+.+   .+....-.+..+.     .+-+.+.+++++  ++.+++++.-+-......++...+.+.+.+
T Consensus        96 ~~~~~~~~~~~~~~~---~l~~~~~t~~~i~-----~~al~~~lt~~~--~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~  165 (428)
T PF13347_consen   96 GLSFTAKLVWLFVFY---ILFDIAYTFVQIP-----YNALIPELTPDP--DERTRLSSWRMIFSMIGSLLASFLAPILVS  165 (428)
T ss_pred             hhhhhhHHHHHHHHH---HHHHHhhhhccCc-----hhhcCccccccH--hhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            111   111211111   1223333333333     233477777653  567788887777777777777777777776


Q ss_pred             hhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchh
Q 011118          191 FVS-------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNA  263 (493)
Q Consensus       191 ~~s-------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (493)
                      ..+       +.....+.++.-.+++++.+.       .++| .    ++     + + ++.                 .
T Consensus       166 ~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~-------~~ke-~----~~-----~-~-~~~-----------------~  209 (428)
T PF13347_consen  166 WFGGGDTSNGYRWMALVLAIVGLVFFLITFF-------FVKE-R----SV-----E-V-TEQ-----------------E  209 (428)
T ss_pred             hhccCccchHHHHHHHHHHHHHHHHhhhhhh-------eeee-c----cc-----c-c-ccc-----------------c
Confidence            554       333343333433333333222       2222 0    00     0 0 000                 0


Q ss_pred             HHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhh-hhhhHHHHHHHH-cCCCchHHHHHHHHHHHHH
Q 011118          264 ELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVL-SFGTLMTATLEW-EGIPAYIIGIARGISATIG  341 (493)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~-~gls~~~iG~~r~~~av~G  341 (493)
                         +            +...++.++..++||.++..+...+++.... ...+.+.-|.++ .|.+ ...+.+..+..+.+
T Consensus       210 ---~------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~  273 (428)
T PF13347_consen  210 ---K------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVAS  273 (428)
T ss_pred             ---c------------ccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHH
Confidence               0            0014677888899999888877777764432 234445556664 6655 67899999999999


Q ss_pred             HHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCc
Q 011118          342 IAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESD  421 (493)
Q Consensus       342 llgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~  421 (493)
                      +++..+.+++.||+|-.|+...+....   ....+...+.+.  .+...+....++..+|.-.+......++-|.+|++|
T Consensus       274 ~v~~~~~~~l~~r~gk~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e  348 (428)
T PF13347_consen  274 IVGSPLWGRLSKRFGKKKVYIIGLLLA---ALGFLLLFFLGP--GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDE  348 (428)
T ss_pred             HHHHHHHHHHHHHccceeehhhhHHHH---HHHHHHHHHHHh--hhHHHHHHHHHHhHhhhcccccccccccccchhhHH
Confidence            999999999999999999877766532   222222233331  233444445555556666667777888888877543


Q ss_pred             -------chhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118          422 -------RCVVGGVQNSLQSTM-DLMAYTMGII  446 (493)
Q Consensus       422 -------rG~v~gv~~sl~~~f-~l~~~~~~ii  446 (493)
                             -|.++|++...+... -+...+.+.+
T Consensus       349 ~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  349 WKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence                   466666666665555 4444444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.18  E-value=2.7e-07  Score=98.45  Aligned_cols=357  Identities=10%  Similarity=-0.006  Sum_probs=198.1

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      ..+..+..-.++--+.+.+-...+|.+ .+-++-|....+.....-.+...+.+++.|.++||++|||++..+.+.-.+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            344556666666677777888889986 6677778899999999999999999999999999999999998886443333


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          +.++.. ..    ...++..+...   -.+.|+......++.+..+ +|+-    ++   ++-....+.+...-.+
T Consensus       105 ----~~l~~~-~~----~a~~~~~ll~~---r~l~G~g~g~~~~~~~~~v-~~~~----~~---~~~~~~~s~~~~~~~~  164 (438)
T PRK10133        105 ----AALFWP-AA----EIMNYTLFLVG---LFIIAAGLGCLETAANPFV-TVLG----PE---SSGHFRLNLAQTFNSF  164 (438)
T ss_pred             ----HHHHHH-HH----hcCCHHHHHHH---HHHHHHHHHHHHhhHHHHH-HHhC----Ch---hhHHHHHHHHHHHHHH
Confidence                211110 01    11222222211   1233444445554544443 2442    22   1222234556666678


Q ss_pred             HHhhhhHHHHHHHHhh------------------hhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCcchhhhhhhh
Q 011118          177 CKLLAPAITGFIISFV------------------SLQASAMTLAIWTT----VTVWVEYWLFMSVYKGIPALAESSQRRI  234 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~------------------s~~~a~~~i~~~n~----~S~~ve~~~l~~Vy~~~p~L~~~~~~~~  234 (493)
                      .-.+||++++.+....                  +.+...  ...|-.    +..+.-...+...+.+.|+..++  +  
T Consensus       165 G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~--~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--~--  238 (438)
T PRK10133        165 GAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSL--VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--N--  238 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--c--
Confidence            8888888887665211                  110000  000000    00011111111223345542100  0  


Q ss_pred             ccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhh
Q 011118          235 RRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFG  313 (493)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~  313 (493)
                          +.  ++                +..+                  ..+.++..+++|.++..+...++|... .+..
T Consensus       239 ----~~--~~----------------~~~~------------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  278 (438)
T PRK10133        239 ----HS--DA----------------KQGS------------------FSASLSRLARIRHWRWAVLAQFCYVGAQTACW  278 (438)
T ss_pred             ----cc--cc----------------cccc------------------hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence                00  00                0000                  011122335677666555444555332 2233


Q ss_pred             hHHHHHHH--HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          314 TLMTATLE--WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       314 ~l~~~yl~--~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      +....|+.  ..|+++...|.......+++++|.+..+++.+|+|..|...++...   .........+.++. ...   
T Consensus       279 ~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~---~~~~~~~~~~~~~~-~~~---  351 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI---AMALCLISAFAGGH-VGL---  351 (438)
T ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH---HHHHHHHHHHcCCh-HHH---
Confidence            34566764  3799999999999999999999999999999999988776655431   11111222223322 221   


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHh-hHHHHHHHHHhccCC
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQST-MDLMAYTMGIIISNP  450 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~-f~l~~~~~~ii~~~p  450 (493)
                       .+..+..+|.-..=.+....-++..|++ .|..+++... +.. .-++..+.+.+...-
T Consensus       352 -~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~  408 (438)
T PRK10133        352 -IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAA  408 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhc
Confidence             2233444555555677777778877764 5666766653 333 367777778776544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=2e-07  Score=97.73  Aligned_cols=357  Identities=16%  Similarity=0.144  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           21 YLYVAHFLARWGARMWEFSVGLYMISV---WPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        21 ~L~~s~~lS~~Gdr~~~Fa~~L~lv~l---~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      .--..-.++.++-.+.||...=.+-.+   +.=|.-..+..-..-.+...+.+|+...+.||++|||++......=.++ 
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~-   91 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS-   91 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-
Confidence            334556778888889999865544444   2224444444444444566677888899999999999987775322222 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-HHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISG-AVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                         ..+  ..+.+      ++..+.+-=   .+.| +.+.+.+++..++      ..++.+   ++-.++=+.|-.=-..
T Consensus        92 ---n~l--~alAp------~f~~Ll~aR---~~~g~a~G~f~~i~~~~a------~~lvpp---~~~~~Aiaiv~~G~tl  148 (394)
T COG2814          92 ---NLL--SALAP------SFAVLLLAR---ALAGLAHGVFWSIAAALA------ARLVPP---GKRGRALALVFTGLTL  148 (394)
T ss_pred             ---HHH--HHHhc------cHHHHHHHH---HHHHHHHHHHHHHHHHHH------HHHcCc---cchhhHHHHHHHHHHH
Confidence               221  11111      222211111   1112 2335555554444      334444   3455666666666689


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      +.++|.-++.++-+.+|.+.+...+.+...+.++..       ++..| +++.         + +..+            
T Consensus       149 A~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~-------~~~lP-~~~~---------~-~~~~------------  198 (394)
T COG2814         149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLL-------WKLLP-PSEI---------S-GSLP------------  198 (394)
T ss_pred             HHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHhCC-CccC---------C-CCCC------------
Confidence            999999999999999999999988888888777543       34567 1100         0 0000            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHH-h-hhhhhHHHHHHHH-cCCCchHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT-V-LSFGTLMTATLEW-EGIPAYIIGIA  333 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~t-V-L~f~~l~~~yl~~-~gls~~~iG~~  333 (493)
                           .+.       ++   +          ...+|+|-.+..+...++.++ . -.|..+-+ |+.+ .|++++.+++.
T Consensus       199 -----~~~-------~~---~----------~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P-~L~~v~g~s~~~vs~~  252 (394)
T COG2814         199 -----GPL-------RT---L----------LRLLRRPGVLLGLLATFLFMTGHFALYTYIRP-FLESVAGFSVSAVSLV  252 (394)
T ss_pred             -----cch-------hH---H----------HHHhcCchHHHHHHHHHHHHcchhhhHHhHHH-HHHHccCCCHhHHHHH
Confidence                 000       00   0          112577777777777766643 1 12333333 4443 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhh-hhhhhh
Q 011118          334 RGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFD-LSVIQQ  412 (493)
Q Consensus       334 r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fD-l~~~~l  412 (493)
                      .-+-.++|+.|+++.+++.+| +..|+.......+...+..  +.++...+....    ....+     |+|- ....|.
T Consensus       253 Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~--l~~~~~~~~~~~----~~~~~-----wg~a~~~~~~~  320 (394)
T COG2814         253 LLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA--LTFTGASPALAL----ALLFL-----WGFAFSPALQG  320 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH--HHHhcchHHHHH----HHHHH-----HHHHhhhhhhH
Confidence            999999999999999999999 8888776554432222211  222222221111    11221     4333 233444


Q ss_pred             hhccCCC---CcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Q 011118          413 MQDLVPE---SDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAIL  470 (493)
Q Consensus       413 ~Qe~vp~---~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l  470 (493)
                      .|..+-+   +.++.+.+...+.-|+- -+++.+.|++... .-.......+...+..+..+
T Consensus       321 ~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~~~  381 (394)
T COG2814         321 LQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLALLL  381 (394)
T ss_pred             HHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHH
Confidence            4444433   78999999888888877 9999999999988 44444444444444444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.17  E-value=4.6e-08  Score=102.10  Aligned_cols=350  Identities=13%  Similarity=0.010  Sum_probs=189.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011118           28 LARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITL  107 (493)
Q Consensus        28 lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~  107 (493)
                      .|+.+--.+.+..|.+..+. +-|....+.....-.+...+..++.|.+.||++||+++..+..     ..+.+.  ...
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~-~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~-----~~~~~~--~~~   73 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDI-DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLA-----TFAAAA--GRL   73 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHh-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH-----HHHHHH--HHH
Confidence            45666667788888866554 4477788888888888889999999999999999987654421     111111  111


Q ss_pred             HhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHH
Q 011118          108 LFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGF  187 (493)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~  187 (493)
                      ..     ..++..+...-   .+.|..+....++... + .||.|    +   ++..++++.+..--....+++|.+++.
T Consensus        74 ~~-----~~~~~~l~~~R---~l~G~g~~~~~~~~~~-~-~~~~~----~---~~r~~a~~~~~~~~~lG~~l~~~~~~~  136 (368)
T TIGR00903        74 LD-----PFNYEWLLACQ---LLAALGQPFLLNAFAP-A-ASQIR----E---ERRDLVISLLSFAMYLGIIFALAAGLK  136 (368)
T ss_pred             HH-----hccHHHHHHHH---HHHHhHhHHHHHHHHH-H-HHHcC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11     01222222222   1223333322222222 2 46652    2   567889999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHH
Q 011118          188 IISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAE  267 (493)
Q Consensus       188 l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (493)
                      +....|.+....+.++..++..++       ++...||.+++   +         ++.               .+..+ .
T Consensus       137 l~~~~gWr~~f~~~~~l~~~~~~~-------~~~~lp~~p~~---~---------~~~---------------~~~~~-~  181 (368)
T TIGR00903       137 IYTAGGLQLLIIPIAAVAAAGIIL-------VLAALPALPFQ---A---------AEG---------------FGFKD-A  181 (368)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHH-------HHHHcCCCCCC---C---------CCC---------------cchHH-H
Confidence            998888887765545554444322       12234542210   0         000               00000 0


Q ss_pred             HHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q 011118          268 KRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATI  346 (493)
Q Consensus       268 ~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~  346 (493)
                                      .+.|+..++||.++........+. ...++.+-+..|+++.|++.. .|..-.+..+.|..|. 
T Consensus       182 ----------------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~-  243 (368)
T TIGR00903       182 ----------------VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGV-  243 (368)
T ss_pred             ----------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHH-
Confidence                            011233456665544443333332 223566778899988888864 5666555555555443 


Q ss_pred             HHHHHHhhhc---hhhhhHHHHHHHHHHHHHHH---HHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCC
Q 011118          347 LYPILQSRIS---TLRTGLWSIWSQWFCLLICV---ASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPES  420 (493)
Q Consensus       347 ~~~~l~~riG---l~r~g~~~~~~q~~~L~~~v---~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~  420 (493)
                        +++..|..   ..+.... .    .++..++   ...+...+.....    ...++.++.-..-.....+.||..|++
T Consensus       244 --~~~~d~~~r~~~r~~~~~-~----~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~p~~  312 (368)
T TIGR00903       244 --AVIPDRVARAGLRSIYIR-A----AALLIAAFFLALAFELNRLALFA----FIGIAGLLMLPAYAIIMDWIGKFCDKE  312 (368)
T ss_pred             --HHhhHHhhhhhhHHHHHH-H----HHHHHHHHHHHHHHccccHHHHH----HHHHHHHhhhhhHHHHHHHHHHhcchh
Confidence              45554443   2111111 0    0111111   1111222222211    112222222222223567899999999


Q ss_pred             cchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Q 011118          421 DRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAA  468 (493)
Q Consensus       421 ~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~  468 (493)
                      .||+..|+.++..++. -.+.++.+.+..  +..+...+.+...+..+.
T Consensus       313 ~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~  359 (368)
T TIGR00903       313 LHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFA  359 (368)
T ss_pred             hcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 466676665553  333444444444444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.17  E-value=7.1e-09  Score=110.60  Aligned_cols=362  Identities=13%  Similarity=0.045  Sum_probs=187.3

Q ss_pred             CchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Q 011118           50 DSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTN  129 (493)
Q Consensus        50 ~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  129 (493)
                      -+....|.....-.+..++.+++.|.+.||++||+++..+.+.-.+.    +.+ .....    . .+.   ..+++.-.
T Consensus        73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~----~~~-~~~~~----~-~~~---~~l~~~r~  139 (465)
T TIGR00894        73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVI----SIV-IPWAA----G-GGI---ALVVFCRV  139 (465)
T ss_pred             CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHH----HHH-HHHHH----H-cCc---hHHHHHHH
Confidence            35566777777788899999999999999999999887776332222    111 00010    0 111   11222223


Q ss_pred             HHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhh-hhHHHHHHHHHHHHHH
Q 011118          130 ISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFV-SLQASAMTLAIWTTVT  208 (493)
Q Consensus       130 ~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~-s~~~a~~~i~~~n~~S  208 (493)
                      +.|..+....++.. ..-.||.    ++   ++..+.++.....-.+..+++|.++|.+.... |.+....+.+++..+.
T Consensus       140 ~~G~~~~~~~~~~~-~~~~~~~----~~---~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~  211 (465)
T TIGR00894       140 IQGLAQGSVSPATH-KIIVKWA----PP---KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAW  211 (465)
T ss_pred             HHHHhcccchhhHH-HHHHhcC----CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHH
Confidence            34555555554433 3334564    32   56889999999989999999999999998873 7665544333333222


Q ss_pred             HHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccce
Q 011118          209 VWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQ  288 (493)
Q Consensus       209 ~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  288 (493)
                      .+    +....++..|+-.++  .+       +.++                       +...+...++-.+..-...|+
T Consensus       212 ~~----~~~~~~~~~p~~~~~--~~-------~~~~-----------------------~~i~~~~~~~~~~~~~~~~~~  255 (465)
T TIGR00894       212 SL----LWFVFPADDPSIHPC--IS-------KFEK-----------------------KYINSSLQGQKGSTRQSLPIK  255 (465)
T ss_pred             HH----HHHHHhcCCcccCCC--CC-------HHHH-----------------------HHHHhhcccccCCCCCCCCHH
Confidence            21    111111122221100  00       0000                       000000000000000022466


Q ss_pred             eeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH---H
Q 011118          289 VYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL---W  363 (493)
Q Consensus       289 ~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~---~  363 (493)
                      ..+++|.++......+.+ +....+...++.|+.+ .|++....|++.++..++++.+..+.+++.+|++..|...   .
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~  335 (465)
T TIGR00894       256 AIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAA  335 (465)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            667777665554444333 2333455677889885 7999999999999999999999999999988875321110   0


Q ss_pred             HHHHHHH-HHHHHHHHH---h-hcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-H
Q 011118          364 SIWSQWF-CLLICVASI---W-IHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-D  437 (493)
Q Consensus       364 ~~~~q~~-~L~~~v~~~---~-~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~  437 (493)
                      ......+ ++.+++...   . .......+..+..+....  +..  -.......|+..|+ .+|.++|+.+..+++. -
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~--~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       336 RKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS--SGP--LAGVLINSLDLAPR-FLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh--hhh--hhhhhhchhhcChh-HHHHHHHHHHHHHHHHHH
Confidence            0011111 111111111   1 111122222222222211  111  12222344555565 8999999999888877 4


Q ss_pred             HHHHHHHHhccCC--CCchHHHHHHHHHHHHHHHHHHH
Q 011118          438 LMAYTMGIIISNP--QDFWKLILISVIVVTLAAILYTF  473 (493)
Q Consensus       438 l~~~~~~ii~~~p--~~F~~l~~~S~~~V~~~~~l~~~  473 (493)
                      +..++.+.+...-  +.|.....+..+....+..++..
T Consensus       411 i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       411 IASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            4445555554432  33544444444444444444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.13  E-value=4.4e-07  Score=96.02  Aligned_cols=190  Identities=16%  Similarity=0.123  Sum_probs=124.9

Q ss_pred             eecccchHHHHHHHHHHH-HhhhhhhHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHH
Q 011118          290 YLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEWEG-IPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWS  367 (493)
Q Consensus       290 y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~~g-ls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~  367 (493)
                      .+|+|.++.-+..+++.. .--.+.+....|+++.| ++...+|...+++++.|+.-=+..+++.||+|..+...++...
T Consensus       203 llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~  282 (400)
T PF03825_consen  203 LLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVA  282 (400)
T ss_pred             HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467787776666665553 22335667788999988 8999999999999999999999999999999988876655532


Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHH
Q 011118          368 QWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGI  445 (493)
Q Consensus       368 q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~i  445 (493)
                      ..  +--.+.+...++.+....+.+.+..+-.+--=.|-.+..+++.+.+|++.|++.-|...++.++.  -+++++.|.
T Consensus       283 ~~--vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  283 YA--VRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             HH--HHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            11  11111222222222333333333333333223447889999999999999999999999999887  778999999


Q ss_pred             hccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011118          446 IISNP---QDFWKLILISVIVVTLAAILYTFHLYRIRKH  481 (493)
Q Consensus       446 i~~~p---~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rgh  481 (493)
                      +...-   +.|.+..+..+.++.+.......+..-+++|
T Consensus       361 l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  361 LYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            88763   3455555555554443333333333323444

>PRK09952 shikimate transporter; Provisional

Probab=99.12  E-value=1.4e-06  Score=92.73  Aligned_cols=135  Identities=8%  Similarity=0.044  Sum_probs=80.9

Q ss_pred             hhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          312 FGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       312 f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      +.+.+..|++ ..|+++...+.......+.++.++.+.+++.+|+|-.|...++.....++..+............   .
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  345 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFW---I  345 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH---H
Confidence            4455667887 48999887666666666778889999999999999877766554322111111111111111111   1


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHH-hh-HHHHHHHHHhccC
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQS-TM-DLMAYTMGIIISN  449 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~-~f-~l~~~~~~ii~~~  449 (493)
                      ++.+..+..++..........++.|..|.+.|+...|....+.+ +. -+..++.+.+...
T Consensus       346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~  406 (438)
T PRK09952        346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11222222333333344456788899999999999998777655 33 4566666666553

>PRK09669 putative symporter YagG; Provisional

Probab=99.11  E-value=2.3e-07  Score=98.61  Aligned_cols=347  Identities=11%  Similarity=0.041  Sum_probs=178.5

Q ss_pred             HHHHHHHhhHHH----HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccc----h-hHHHHHHHHHHHH
Q 011118           25 AHFLARWGARMW----EFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT----Y-VKVLQIWLVTQNL   95 (493)
Q Consensus        25 s~~lS~~Gdr~~----~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~----R-~~v~~~~~~~q~~   95 (493)
                      ++.+..+|+.+.    ..-++.++...+.=|...++..-++..+.-.+..|.+|.++||.+    | |+.+..+.+.-  
T Consensus        13 ~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~--   90 (444)
T PRK09669         13 GYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF--   90 (444)
T ss_pred             hhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH--
Confidence            344444554443    334455666777778888888888888889999999999999953    3 55555443222  


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                        ++++.  ++...|.........++...+   ++.+......++... +    +.+.++++ + ++.+++|+.=...-.
T Consensus        91 --~i~~~--l~f~~p~~~~~~~~~~~~~~~---~l~~~~~t~~~ip~~-a----l~~~~t~~-~-~eR~~l~~~r~~~~~  156 (444)
T PRK09669         91 --GVVCL--LTFYTPDFGATGKIIYACVTY---ILLSLVYTAINVPYC-A----MPGAITND-P-RERHSLQSWRFALSF  156 (444)
T ss_pred             --HHHHH--HHHhCCCCCcchHHHHHHHHH---HHHHHHHHhhcchHH-H----hHHHhcCC-H-HHHHHHHHHHHHHHH
Confidence              22222  111222110111122222222   122333333443322 2    24555544 3 566778877777777


Q ss_pred             HHHhhhhHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCC
Q 011118          176 TCKLLAPAITGFIISFVS-------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM  248 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~~~s-------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      +...++|.+...+....+       ......+.++...+..+..+       ...+|..     +     +++ ++    
T Consensus       157 ~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~-------~~~~e~~-----~-----~~~-~~----  214 (444)
T PRK09669        157 IGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF-------FMTKERY-----T-----PEV-DN----  214 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh-------CCeEEec-----C-----CCC-cC----
Confidence            777788777666665442       22233322333323222211       1111100     0     000 00    


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhh-hhhHHHHHHHH-cCCC
Q 011118          249 PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLS-FGTLMTATLEW-EGIP  326 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~-f~~l~~~yl~~-~gls  326 (493)
                                  ..+                   ..++++..+++|.++..+...+++..... .++...-|.+. .+ +
T Consensus       215 ------------~~~-------------------~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~  262 (444)
T PRK09669        215 ------------SSS-------------------VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-R  262 (444)
T ss_pred             ------------CCC-------------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-C
Confidence                        000                   12233344577777777666655533322 23333323333 33 3


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhh
Q 011118          327 AYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFD  406 (493)
Q Consensus       327 ~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fD  406 (493)
                      +...+.+...+.+.+++++.+.+++.+|+|-.+.-.++...   +...++..+..+...  ...+....++..+|.....
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~i~g~~~~~~~  337 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVA---FVILSALIFFIPPSN--VWLIFALNILFNFIQNLTT  337 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH---HHHHHHHHHHhCcch--HHHHHHHHHHHHHHHHHHH
Confidence            44556677788889999999999999999977766655431   111122222222111  2223334445566666666


Q ss_pred             hhhhhhhhccCCCC-------cchhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118          407 LSVIQQMQDLVPES-------DRCVVGGVQNSLQSTM-DLMAYTMGII  446 (493)
Q Consensus       407 l~~~~l~Qe~vp~~-------~rG~v~gv~~sl~~~f-~l~~~~~~ii  446 (493)
                      .....++=+.+|++       ..|..+|+....+++. -++..+.+.+
T Consensus       338 ~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        338 PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677776666533       3455667666655655 4555555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.08  E-value=3.1e-07  Score=97.84  Aligned_cols=126  Identities=8%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Q 011118          319 TLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATS  398 (493)
Q Consensus       319 yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~S  398 (493)
                      +..+.|++...-+..-...++.++.++++.+++.+|+|-.+...++.....++..........+.... ..  ..++...
T Consensus       297 i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~--~~~~~~~  373 (479)
T PRK10077        297 IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VA--LLSMLFY  373 (479)
T ss_pred             HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HH--HHHHHHH
Confidence            33467888776666666677788999999999999999666555555432222221111111111111 11  1111111


Q ss_pred             hchhh-hhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhc
Q 011118          399 RLGLW-MFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIII  447 (493)
Q Consensus       399 R~GLw-~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~  447 (493)
                      ..+.. .+......+.+|..|+++||+..|...+.+++.. ++.++...+.
T Consensus       374 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        374 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            11111 1235567889999999999999999999988884 4445555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.05  E-value=7.3e-07  Score=96.25  Aligned_cols=388  Identities=9%  Similarity=-0.030  Sum_probs=195.0

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHHHHhhhccceeeecc-cchhHHHHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISV--WPDSLLFAAIYGAVESASIALFGPIVGHWVDK-LTYVKVLQIWLV   91 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l--~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr-~~R~~v~~~~~~   91 (493)
                      +.|..+.++...++.+.+--...--+|+++..-  ++-|....+..-..-.+...+..+..|.+.|| .+|||++..+.+
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~   87 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI   87 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence            335788899999999999888888888888765  66677888888888888889999999999999 799999888875


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHH
Q 011118           92 TQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIR  171 (493)
Q Consensus        92 ~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mr  171 (493)
                      ...+.    ..   ++..    . .++..+....   .+.+..+.++.+. ..+.-.||.+    ++++++..+..+...
T Consensus        88 ~~~~g----~~---~~~~----~-~~~~~~~~~~---~l~g~g~g~~~~~-~~~~~a~~~~----~~~~~~r~~~~~~~~  147 (475)
T TIGR00924        88 VLMLG----HF---MLAM----S-IYPDLIFYGL---GTIAVGSGLFKAN-PSSMVGKLYE----RGDMPRRDGGFTLFY  147 (475)
T ss_pred             HHHHH----HH---HHHh----c-ccHhHHHHHH---HHHHhccccccCC-HHHHHHHhcC----CCCcccccceehhHH
Confidence            43333    11   1111    1 1111111111   1223334444333 2233335553    221123455666777


Q ss_pred             hHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccc
Q 011118          172 RIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRE  251 (493)
Q Consensus       172 riDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
                      -.-.++.++||.++|.+.+..|++.+....++...++.+. +++..+-|+..|.-.   +       +.+.++.+.....
T Consensus       148 ~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~-~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~  216 (475)
T TIGR00924       148 MSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT-FFAGRHMLRDIGSVP---D-------PLSGQGKTYGKLL  216 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-HHHcccccccCCCCC---C-------CcchhhhhhHHHH
Confidence            7888999999999999998778766553333222222211 222222221111100   0       0000000000000


Q ss_pred             -----------cccccccccchhHHHHH-----HHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhh-hhhh
Q 011118          252 -----------RESLLSHDENNAELAEK-----RWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVL-SFGT  314 (493)
Q Consensus       252 -----------~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL-~f~~  314 (493)
                                 .......+....+....     .+.. ..++..+.  ......-.+...+.+.+....+|..+. ..++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s  293 (475)
T TIGR00924       217 LALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIF-FFRLAFKP--RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPT  293 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHHHhc--cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                       00000000000000000     0000 00000000  000000011223455555555554442 3444


Q ss_pred             HHHHHHHH-cCCCch----HHHHHHHHHHHHHHHHHHH----HHHHHhh-hchhhhh--HHHHHHHHHH-HHHHHHHHhh
Q 011118          315 LMTATLEW-EGIPAY----IIGIARGISATIGIAATIL----YPILQSR-ISTLRTG--LWSIWSQWFC-LLICVASIWI  381 (493)
Q Consensus       315 l~~~yl~~-~gls~~----~iG~~r~~~av~GllgT~~----~~~l~~r-iGl~r~g--~~~~~~q~~~-L~~~v~~~~~  381 (493)
                      .++.|..+ .+.+..    -.+.+.++.++.=++.+..    ++++.|| .+.....  .++...-.++ ...++.....
T Consensus       294 ~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~  373 (475)
T TIGR00924       294 SLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA  373 (475)
T ss_pred             HHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45556653 333321    2566777766666666544    4566665 2222111  2222211111 1111111111


Q ss_pred             c-chHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          382 H-NSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       382 ~-~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      . +...+...++...++..+|=-....+..++.=+..|++.||+..|+......+-
T Consensus       374 ~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g  429 (475)
T TIGR00924       374 DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMG  429 (475)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            1 113456666667777778878888899999989999999999999988555554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00898 2A0119 cation transport protein

Probab=99.03  E-value=6.5e-08  Score=104.11  Aligned_cols=366  Identities=13%  Similarity=0.109  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Q 011118           52 LLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNIS  131 (493)
Q Consensus        52 ll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  131 (493)
                      ....+....+..+..++.++..|.+.||++||+++..+.+...+.    +.  ...+.      .++..+.+..   .+.
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~----~~--~~~~~------~~~~~~~~~r---~l~  190 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVS----GV--LTAFS------PNYTVFLVFR---LLV  190 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHH----HH--HHHHc------ccHHHHHHHH---HHH
Confidence            566788888888999999999999999999999988876444433    11  11111      1222222221   223


Q ss_pred             HHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011118          132 GAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWV  211 (493)
Q Consensus       132 g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~v  211 (493)
                      |.......+. ...+-.||+    ++   ++....++...-.-.+..+++|.+++.+.++   +....+..+..++..+ 
T Consensus       191 G~~~~~~~~~-~~~~~~e~~----~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~w---r~~~~~~~i~~~~~~~-  258 (505)
T TIGR00898       191 GMGIGGIWVQ-AVVLNTEFL----PK---KQRAIVGTLIQVFFSLGLVLLPLVAYFIPDW---RWLQLAVSLPTFLFFL-  258 (505)
T ss_pred             HhhccchHHH-HHHHhheec----Ch---hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHH-
Confidence            3333333322 223334554    33   3456677777777778888899888777653   2222222222222211 


Q ss_pred             HHHHHHHHHhhcCcchh----hhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccc
Q 011118          212 EYWLFMSVYKGIPALAE----SSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAW  287 (493)
Q Consensus       212 e~~~l~~Vy~~~p~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  287 (493)
                         +..    ..||-++    +.+.++.++.-.+..+.++...      .  ++......   .++ .++  +. -..++
T Consensus       259 ---~~~----~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~------~--~~~~~~~~---~~~-~~~--~~-~~~~~  316 (505)
T TIGR00898       259 ---LSW----FVPESPRWLISQGRIEEALKILQRIAKINGKKL------P--AEVLSLSL---EKD-LSS--SK-KQYSF  316 (505)
T ss_pred             ---HHH----hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCC------C--HHHHhhhh---hhh-hhh--cc-CCCcH
Confidence               111    2333210    0000000000000000000000      0  00000000   000 000  00 02355


Q ss_pred             eeeecccchHHHHHHH-HHHHHh-hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 011118          288 QVYLKQEVVLPGVSLA-LLFFTV-LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSI  365 (493)
Q Consensus       288 ~~y~~q~v~la~~ala-lLy~tV-L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~  365 (493)
                      +..+++|.++...... +.++.. ..+.+ +..+....+.+......+   .++.++.|.++.+++.+|+|-.+...++.
T Consensus       317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~l~dr~grr~~~~~~~  392 (505)
T TIGR00898       317 LDLFRTPNLRKTTLCLMMLWFTTAFSYYG-LVLDLGNLGGNIYLDLFI---SGLVELPAKLITLLLIDRLGRRYTMAASL  392 (505)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHHH-HhccccccCCChHHHHHH---HHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5567777666554443 323221 11111 122333456555444443   44577888899999999999766655554


Q ss_pred             HHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHH
Q 011118          366 WSQWFCLLICVASIWIHNS--LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYT  442 (493)
Q Consensus       366 ~~q~~~L~~~v~~~~~~~~--~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~  442 (493)
                      ....   ..+++..+.+..  .....    ...+..++.-+.-.....+.+|..|++.||+..|+.++...+.. +..++
T Consensus       393 ~~~~---~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i  465 (505)
T TIGR00898       393 LLAG---VALLLLLFVPVDLYFLRTA----LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFL  465 (505)
T ss_pred             HHHH---HHHHHHHHcCCCchHHHHH----HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHH
Confidence            3222   222222233322  11111    12222233333334556788999999999999999988887773 33344


Q ss_pred             HHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011118          443 MGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIRKH  481 (493)
Q Consensus       443 ~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~Rgh  481 (493)
                      .+ + .+........+.+..++.++...  .++...||+
T Consensus       466 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~lpet~~~  500 (505)
T TIGR00898       466 VY-L-GEKWLFLPLVLFGGLALLAGILT--LFLPETKGV  500 (505)
T ss_pred             HH-H-HHHHHhhHHHHHHHHHHHHHHHH--HcCcCCCCC
Confidence            44 2 22223333444444444433333  344445553

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.02  E-value=2.2e-06  Score=90.74  Aligned_cols=348  Identities=13%  Similarity=0.092  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFI   98 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~   98 (493)
                      +..++..-++--..+.+..-..|.+ .+-++-|....+.......+..++.+++.|.+.||++||+++..+.++-.+.  
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g--   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG--   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH--
Confidence            3344444444445556666667775 4566778889999999999999999999999999999999998887443333  


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHH
Q 011118           99 VAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCK  178 (493)
Q Consensus        99 ~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~  178 (493)
                        +.+    ..+ .....++..+...   ..+.|+...+..++.+..     +..+.++   ++..+..+..+..-.+..
T Consensus        82 --~~l----~~~-~~~~~~~~~~l~~---~~l~G~g~g~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~lG~  143 (410)
T TIGR00885        82 --AFL----FWP-AAEIMNYTLFLVG---LFILTAGLGFLETAANPY-----ILVMGPE---STATRRLNLAQSFNPFGS  143 (410)
T ss_pred             --HHH----HHH-HHhhccHHHHHHH---HHHHHhhHHHHHhhhhHH-----HHHHCCH---hHHHHHHHHHHHHHHHHH
Confidence              111    111 0011222222211   122233333333222222     1112222   345666777788888999


Q ss_pred             hhhhHHHHHHHHhh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Q 011118          179 LLAPAITGFIISFV--------------------------SLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQR  232 (493)
Q Consensus       179 l~gP~~~G~l~~~~--------------------------s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~  232 (493)
                      .+||.+++.+....                          +.+.....+++...+.    ..+..  +.+.|+..++   
T Consensus       144 ~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~----~~~~~--~~~~p~~~~~---  214 (410)
T TIGR00885       144 IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV----ALLIM--LTKMPALNHS---  214 (410)
T ss_pred             HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HhcCCCCCcc---
Confidence            99999999886431                          2233332222222211    11111  2234532100   


Q ss_pred             hhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hh
Q 011118          233 RIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LS  311 (493)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~  311 (493)
                      +     +   ++                 .+                   ..+.++..+++|.++......++|..+ .+
T Consensus       215 ~-----~---~~-----------------~~-------------------~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~  250 (410)
T TIGR00885       215 D-----A---KQ-----------------IS-------------------FSASLSRLARIRHYREGVIAQFFYVGVQIM  250 (410)
T ss_pred             c-----c---cc-----------------cc-------------------chhhHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            0     0   00                 00                   001111224566666666666777544 34


Q ss_pred             hhhHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 011118          312 FGTLMTATLEWE--GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAY  389 (493)
Q Consensus       312 f~~l~~~yl~~~--gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~  389 (493)
                      ..+.+..|+.+.  +.++..-+.+.+..-.....|-++.+++.+|++..|.-.+...   .+...+++..+.++......
T Consensus       251 ~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~---~~~~~~ll~~~~~~~~~~~~  327 (410)
T TIGR00885       251 CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAI---IGMALCLGSIFAGGHVGLYC  327 (410)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH---HHHHHHHHHHHcCChHHHHH
Confidence            556678888764  3343333333333333445677777888888887765444333   23333333344443222333


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccC
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISN  449 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~  449 (493)
                      +.+.|...|-+  |   .+..++..+..+++......+...+. -+--++..++|.+...
T Consensus       328 l~~~glf~s~~--f---p~i~sl~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       328 LTLCSAFMSLM--F---PTIYGIALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHH--H---HHHHHHHHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHHH
Confidence            44444444432  3   56677777777777654455555554 3446667777877763

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.02  E-value=4e-08  Score=105.83  Aligned_cols=382  Identities=8%  Similarity=-0.055  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccc-----hhHHHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT-----YVKVLQIWLVTQ   93 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~-----R~~v~~~~~~~q   93 (493)
                      ...+|.++-+.    .+-..+++.++-.-+.-|.-.++.+.....+|..+ -++.|.++||++     ||+.+..+.+..
T Consensus        31 ~~~~y~~qGl~----~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        31 GLQVLFVKGIA----GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHhhHH----HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence            34456655553    55556677767766677888888888888888887 777999999997     777666554221


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhH-HHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHh
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFI-AFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRR  172 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrr  172 (493)
                      .      +.+ +..+..    ..+.. ....+..   +.+......+++..-.     ++...+ ++++....+-+..-+
T Consensus       106 ~------~~~-~~~l~~----~~~~~~~~~~~~~---l~~~~~a~~dv~~da~-----~~e~~~-~~~~~~~~~~s~~~~  165 (468)
T TIGR00788       106 S------AIL-YGLLPG----KVSSAKVAAAFIF---LAALAKALYDVLVDSL-----YSERIR-ESPSAGPSLVSWMWG  165 (468)
T ss_pred             H------HHH-HHhccc----ccchHHHHHHHHH---HHHHHHHHHHHhHHHH-----Hhhhhh-cCCCcCCCeeeHHHH
Confidence            1      111 111111    11211 2211221   2233334444443222     222223 221111112223334


Q ss_pred             HHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccc
Q 011118          173 IDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRER  252 (493)
Q Consensus       173 iDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
                      .-....++||.++|.+....+......+.++.-.+..+    ...    ..||.+.    . .  +|+..+....-+.  
T Consensus       166 ~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~----~~~----~~~E~~~----~-~--~~~~~~~~~~~~~--  228 (468)
T TIGR00788       166 ASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF----VSN----LSKERRA----F-V--RPRIGTYLEMNMA--  228 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH----HHH----hcccccc----c-c--cccccccchhhhh--
Confidence            44579999999999999887766655433333222211    111    2333110    0 0  0000000000000  


Q ss_pred             ccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHH-HHHhhhhhhHH-HHHHHHcCCCchHH
Q 011118          253 ESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL-FFTVLSFGTLM-TATLEWEGIPAYII  330 (493)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalL-y~tVL~f~~l~-~~yl~~~gls~~~i  330 (493)
                                ..  ..+......++     + .+.+..+++|.+...+++.++ |...-+..+-+ ..+-...|+++..+
T Consensus       229 ----------~~--~~~~~~~~~~~-----~-~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~  290 (468)
T TIGR00788       229 ----------LL--TLGVLANVKVQ-----I-LGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFS  290 (468)
T ss_pred             ----------hh--hhhHHHHHHHH-----H-HHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchh
Confidence                      00  00000000000     1 112223577877777777766 64332222111 11122589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH--HHHhhcchH-HHHHHHHHHHHhhhchhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICV--ASIWIHNSL-VAAYMLMVGVATSRLGLWMFDL  407 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v--~~~~~~~~~-~s~~~l~~gi~~SR~GLw~fDl  407 (493)
                      |.+.+.+++++++|...++++.||++..+.-.++...+..+.....  ..-|..... ..........++-.++--..-+
T Consensus       291 G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~  370 (468)
T TIGR00788       291 GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM  370 (468)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc
Confidence            9999999999999999999999999987777666553322211100  001100000 0011111222223333334456


Q ss_pred             hhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc----CCCCchHHHHHH
Q 011118          408 SVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS----NPQDFWKLILIS  460 (493)
Q Consensus       408 ~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~----~p~~F~~l~~~S  460 (493)
                      ....++++.+|++++|+..|...++.++. .++..+.+++..    .-++|..+++..
T Consensus       371 ~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i  428 (468)
T TIGR00788       371 PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI  428 (468)
T ss_pred             cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence            67899999999999999999999999888 666655554433    333444444433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.99  E-value=1.4e-06  Score=93.82  Aligned_cols=270  Identities=7%  Similarity=-0.029  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      .+...|...++..++.-.|....|.+. +-++-|....+.......+..++..+..|.+.||++||+++..+.+.-.+. 
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~-  114 (476)
T PLN00028         37 AFHLSWISFFTCFVSTFAAAPLLPIIR-DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA-  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-
Confidence            344555666666666656666666644 344556666777666666777777899999999999999876654222211 


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                         .   ++...    . .++..+.++.   .+.|.......++ . ..-.||.+    +   ++....++.....-..+
T Consensus       115 ---~---~~~~~----~-~s~~~l~~~r---~l~G~~~~~~~~~-~-~~i~~~~~----~---~~rg~a~g~~~~~~~~g  171 (476)
T PLN00028        115 ---V---FCMSL----V-SSATGFIAVR---FFIGFSLATFVSC-Q-YWMSTMFN----G---KIVGTANGIAAGWGNLG  171 (476)
T ss_pred             ---H---HHHHH----h-cCHHHHHHHH---HHHHHHHHhhHHH-H-HHHHHhcC----h---hheeHHHHHHHHHHHHH
Confidence               1   11111    1 1221211111   1223222212222 1 12246652    2   34555666655444455


Q ss_pred             HhhhhHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCC
Q 011118          178 KLLAPAITGFIISF---------VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSM  248 (493)
Q Consensus       178 ~l~gP~~~G~l~~~---------~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      -.++|.+.+.+...         .|.+....+.++..++..+.-+    ...+..|+-..  ++.         ++    
T Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~----~~~~~~p~~~~--~~~---------~~----  232 (476)
T PLN00028        172 GGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL----TLGQDLPDGNY--REL---------KK----  232 (476)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH----HHcCcCCCCch--hhH---------Hh----
Confidence            55555555444321         3555555444444433332211    11111221000  000         00    


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccch-HHHHHHHHHHHHhhhhhhHHHHHHHH-cCCC
Q 011118          249 PRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVV-LPGVSLALLFFTVLSFGTLMTATLEW-EGIP  326 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~-la~~alalLy~tVL~f~~l~~~yl~~-~gls  326 (493)
                                 +...++ . .. .+            .|+..++++.+ ...+.+...+.....+.+.+..|+.+ .|++
T Consensus       233 -----------~~~~~~-~-~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s  286 (476)
T PLN00028        233 -----------SGTMPK-D-SF-SK------------VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLS  286 (476)
T ss_pred             -----------cCcccc-c-cH-HH------------HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Confidence                       000000 0 00 00            01111233322 22222222233334455667788875 6999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011118          327 AYIIGIARGISATIGIAATILYPILQSRIST  357 (493)
Q Consensus       327 ~~~iG~~r~~~av~GllgT~~~~~l~~riGl  357 (493)
                      +...|.+-++..++++.|.++.+++..|+|-
T Consensus       287 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~  317 (476)
T PLN00028        287 LETAGAIAASFGLMNLFARPAGGYLSDVAAR  317 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999999999999999999998874

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.95  E-value=1.4e-06  Score=98.76  Aligned_cols=154  Identities=16%  Similarity=0.029  Sum_probs=89.6

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISV---WPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQ   93 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l---~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q   93 (493)
                      +..+.+...-.+..+.|.+..+.+...+..+   +.-+....+....+-.+..++.++..|.+.||.+||+++..+.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4566677777777777766444444433332   4456677788888889999999999999999999999988876443


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhH
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRI  173 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrri  173 (493)
                      .+.    ++  +..+.      .++..+.+.-   ++.|.......+.... .-.||.    ..   +...+..+.++..
T Consensus       243 ~i~----~l--l~afa------~s~~~llv~R---~l~G~g~g~~~p~~~~-~isE~~----p~---~~Rg~~~g~~~~~  299 (742)
T TIGR01299       243 GFF----AF--FSSFV------QGYGFFLFCR---LLSGFGIGGAIPIVFS-YFAEFL----AQ---EKRGEHLSWLCMF  299 (742)
T ss_pred             HHH----HH--HHHHH------hhHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHC----CH---HHHHHHHHHHHHH
Confidence            332    11  11111      1122221111   1222222222222122 223343    22   3456667777777


Q ss_pred             HHHHHhhhhHHHHHHHHhhh
Q 011118          174 DLTCKLLAPAITGFIISFVS  193 (493)
Q Consensus       174 Dl~~~l~gP~~~G~l~~~~s  193 (493)
                      -.+..+++|.+++.++...|
T Consensus       300 ~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       300 WMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            77888888888877765443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.95  E-value=2.5e-06  Score=92.32  Aligned_cols=164  Identities=15%  Similarity=0.098  Sum_probs=106.1

Q ss_pred             eecccchHHHHHHHHHHH-HhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchh--hhhHHHH
Q 011118          290 YLKQEVVLPGVSLALLFF-TVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTL--RTGLWSI  365 (493)
Q Consensus       290 y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~--r~g~~~~  365 (493)
                      ..++|...--+.--++|. -+-....+...|.+ ..|++..++..+.-+..+.++.|+++++++.||+|..  |+....+
T Consensus       277 ~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l  356 (477)
T PF11700_consen  277 IRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL  356 (477)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            334453333222234443 23345567888999 5999999999999999999999999999999999998  7766666


Q ss_pred             HHHHHHHHHHHHHHhh----cchHHHHH--HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HH
Q 011118          366 WSQWFCLLICVASIWI----HNSLVAAY--MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DL  438 (493)
Q Consensus       366 ~~q~~~L~~~v~~~~~----~~~~~s~~--~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l  438 (493)
                      ..=.++...+...++.    ..+.+..+  .++.|.+     .-..--...+++-+.+|+++.+..+|...-..... =+
T Consensus       357 ~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~-----~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~l  431 (477)
T PF11700_consen  357 ILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLF-----MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWL  431 (477)
T ss_pred             HHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            4211111111121111    11222222  2223332     12224555788999999999999999999988888 67


Q ss_pred             HHHHHHHhccCCCCchHHHH
Q 011118          439 MAYTMGIIISNPQDFWKLIL  458 (493)
Q Consensus       439 ~~~~~~ii~~~p~~F~~l~~  458 (493)
                      +.++.+.+....++-.+-..
T Consensus       432 GPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  432 GPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             HHHHHHHHHHHhCCchhHHH
Confidence            77888888777764444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.91  E-value=7.4e-06  Score=85.47  Aligned_cols=394  Identities=12%  Similarity=0.126  Sum_probs=224.7

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQ   93 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q   93 (493)
                      -++-.+..++.=-++--+.+.+-+--+|- +.+.++-|....+..+++...+..+.+.+.|..++|.++|+.+.....+=
T Consensus        10 ~~~~~~v~~t~lFfl~G~~~~l~diLip~-l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~   88 (422)
T COG0738          10 SVKLAFVLLTSLFFLWGFITCLNDILIPH-LKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLY   88 (422)
T ss_pred             CceeHHHHHHHHHHHHHHHhhcchhhHHH-HHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHH
Confidence            34434555666666666667777778888 67889999999999999999999999999999999999999988776222


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHH-HHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHh
Q 011118           94 NLSFIVAGVSVITLLFFSSLKSTNFIAFV-LLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRR  172 (493)
Q Consensus        94 ~~~v~~s~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrr  172 (493)
                          ++.|.++    .| .+...++..|. .+++++.-.++.+.=+++-         +..+ ++++ .+=.|+| .++.
T Consensus        89 ----avg~~lF----~p-Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~---------v~~l-g~~~-~a~~rln-l~q~  147 (422)
T COG0738          89 ----AVGAALF----WP-AASSKSYGFFLVALFILASGIGLLETAANPY---------VTLL-GKPE-SAAFRLN-LAQA  147 (422)
T ss_pred             ----HHHHHHH----hh-hhhhhhHHHHHHHHHHHHhhhHHHHhccchH---------HHHh-CCch-hHHHHHH-HHHH
Confidence                3333332    22 22333443333 3454444444444444433         2333 3322 2333444 5677


Q ss_pred             HHHHHHhhhhHHHHHHHHh-----hh------hHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCC
Q 011118          173 IDLTCKLLAPAITGFIISF-----VS------LQAS--AMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMP  239 (493)
Q Consensus       173 iDl~~~l~gP~~~G~l~~~-----~s------~~~a--~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~  239 (493)
                      -.-...++||.+++.++-.     .+      .+..  ..+-.-.=..+.+.=.+.+...+.|.|+.++.          
T Consensus       148 fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------  217 (422)
T COG0738         148 FNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------  217 (422)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------
Confidence            7888999999999999872     11      1110  00000111112222223333444455654311          


Q ss_pred             cccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHH
Q 011118          240 IDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTA  318 (493)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~  318 (493)
                         ++  +.            .+.   +                ..+...-+|||-++.+...-++|--+ ...++.++.
T Consensus       218 ---~~--~~------------~~~---~----------------~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~  261 (422)
T COG0738         218 ---AP--SL------------GAS---G----------------SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVS  261 (422)
T ss_pred             ---cc--cc------------ccc---c----------------cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence               00  00            000   0                01233446888999888888999655 578889999


Q ss_pred             HHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 011118          319 TLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVAT  397 (493)
Q Consensus       319 yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~  397 (493)
                      |+.+ +|+++.+-+.+.+.-=++-.+|=++..++++|+...|.-.+.-.   +-...|....++++-..-..+++.|...
T Consensus       262 y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~---~~ill~~~~~l~~g~v~~~~l~~ig~F~  338 (422)
T COG0738         262 YLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYAL---IAILLLLAVALIGGVVALYALFLIGLFN  338 (422)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            9997 99999988888888777788999999999999999987664442   2233344445555433333455666665


Q ss_pred             hhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          398 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYR  477 (493)
Q Consensus       398 SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~  477 (493)
                      |-..=..|-++...+-    ++.+.  .++....-.-+--+..++.|.+...-+.-..-.+....+...- ..|..+-.+
T Consensus       339 simfPTIfslal~~l~----~~ts~--~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV-~~~~~~~~~  411 (422)
T COG0738         339 SIMFPTIFSLALKNLG----EHTSV--GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV-LFFALIGKK  411 (422)
T ss_pred             HHHHHHHHHHHHhccC----ccccc--cceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence            6554455555543332    22222  2222222222224455555655533222222112333333322 233333334


Q ss_pred             hhcCCCCh
Q 011118          478 IRKHLFHF  485 (493)
Q Consensus       478 ~Rghl~h~  485 (493)
                      .|||+-|=
T Consensus       412 ~k~~~~~~  419 (422)
T COG0738         412 SKGRLSAE  419 (422)
T ss_pred             cccchhhh
Confidence            78887664

>PRK11462 putative transporter; Provisional

Probab=98.87  E-value=8.2e-06  Score=87.74  Aligned_cols=328  Identities=11%  Similarity=0.033  Sum_probs=160.3

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc----chh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011118           40 VGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL----TYV-KVLQIWLVTQNLSFIVAGVSVITLLFFSSLK  114 (493)
Q Consensus        40 ~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~----~R~-~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~  114 (493)
                      +..|..+...=+...+|..-++.-+-=.+..|.+|.++||.    +|+ +-+..+-    +..++++.+  ++..| ...
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~----i~~~i~~~l--lf~~p-~~s  104 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGA----LPFGIVCVL--AYSTP-DLS  104 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHH----HHHHHHHHH--HHhCC-CCC
Confidence            34444455554666666666666677778899999999985    344 4443332    222323221  21222 211


Q ss_pred             cch-hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhh
Q 011118          115 STN-FIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS  193 (493)
Q Consensus       115 ~~~-~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s  193 (493)
                      ... ..++...++   +....-.+.++- +.+    |.+.++++ . ++.+++++.-.-...+..+++|++...+.+..|
T Consensus       105 ~~~~~~y~~~~~~---~~~~~~t~~~ip-y~a----l~~~lt~d-~-~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g  174 (460)
T PRK11462        105 MNGKMIYAAITYT---LLTLLYTVVNIP-YCA----LGGVITND-P-TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             cchHHHHHHHHHH---HHHHHHHHHhcc-HHH----HHHHhcCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            111 222222221   222333344433 222    36777665 3 678889887777777777788888777766543


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHH
Q 011118          194 -------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELA  266 (493)
Q Consensus       194 -------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (493)
                             +.....++++.-.+..++   +..    ..+|..+          + + ++                ..+   
T Consensus       175 ~~~~~~g~~~~~~i~~ii~~i~~~i---~~~----~~kE~~~----------~-~-~~----------------~~~---  216 (460)
T PRK11462        175 GDNKPLGFQGGIAVLSVVAFMMLAF---CFF----TTKERVE----------A-P-PT----------------TTS---  216 (460)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHH---HHh----cceeccC----------C-C-cc----------------CCC---
Confidence                   233332222222222221   111    1222110          0 0 00                000   


Q ss_pred             HHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHH
Q 011118          267 EKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAA  344 (493)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~iG~~r~~~av~Gllg  344 (493)
                                      +++..+..++++.++..+...++++.- ..+.+.++-|.+. .|. +...+.+.+...+.+++|
T Consensus       217 ----------------~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig  279 (460)
T PRK11462        217 ----------------MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIG  279 (460)
T ss_pred             ----------------HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHH
Confidence                            112223335677777665555555332 2244555555554 453 445677788888899999


Q ss_pred             HHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCC-----
Q 011118          345 TILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPE-----  419 (493)
Q Consensus       345 T~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~-----  419 (493)
                      +.+.+++.+|+|-.+...+...   .....++..++.+.....  .+....++..+|.-.+......++.+.++.     
T Consensus       280 ~~l~~~l~~r~gkk~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~t  354 (460)
T PRK11462        280 SALAKPLTDWKCKVTIFWWTNA---LLAVISLAMFFVPMQASI--TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCN  354 (460)
T ss_pred             HHHHHHHHHHhChHHHHHHHHH---HHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhc
Confidence            9999999999996655443332   111112222223221111  111122223334334455555666666663     


Q ss_pred             --CcchhHHHHHHHHHHhh-HHHHHHHH
Q 011118          420 --SDRCVVGGVQNSLQSTM-DLMAYTMG  444 (493)
Q Consensus       420 --~~rG~v~gv~~sl~~~f-~l~~~~~~  444 (493)
                        +.-|...+.....+.+. -++..+.+
T Consensus       355 G~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        355 GKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22355455555445444 44444444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.80  E-value=4.3e-07  Score=93.80  Aligned_cols=350  Identities=18%  Similarity=0.196  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011118           35 MWEFSVGLYMISV-WPD--SLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFS  111 (493)
Q Consensus        35 ~~~Fa~~L~lv~l-~~~--sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~  111 (493)
                      .|.+.+-.|.+.. -|+  +-+..+..|-+-++-+.+-+|..|.|.||++||+++.++.+.    ++++..+ .. .   
T Consensus        47 ~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~----va~s~ll-~~-~---  117 (451)
T KOG2615|consen   47 FVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIG----VALSYLL-WA-L---  117 (451)
T ss_pred             HHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHH----HHHHHHH-HH-H---
Confidence            4444555544433 344  888999999999999999999999999999999999888633    3332221 11 0   


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHh
Q 011118          112 SLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISF  191 (493)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~  191 (493)
                         ..   .|.+.++.=.+.|+....-++...+.      -.++.+   +.-...=+.+..--.+.-++||+++|.+.++
T Consensus       118 ---S~---~F~afv~aR~l~Gi~kgnl~v~rAii------sdV~se---k~r~l~ms~v~~a~~lGfilGPmIGgyla~f  182 (451)
T KOG2615|consen  118 ---SR---NFAAFVLARFLGGIFKGNLSVIRAII------SDVVSE---KYRPLGMSLVGTAFGLGFILGPMIGGYLAQF  182 (451)
T ss_pred             ---HH---HHHHHHHHHHhhhhccCchHHHHHHH------HhhcCh---hhccceeeeeehhhhcchhhcchhhhHHHhh
Confidence               11   23222211122344433333333222      222221   2334444555566689999999999999883


Q ss_pred             h----hhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhhhhhhhccCCCcccccccCCccccccccccccchhH
Q 011118          192 V----SLQAS--AMTLAIWTTVTVWVEYWLFMSVYKGIPA-LAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAE  264 (493)
Q Consensus       192 ~----s~~~a--~~~i~~~n~~S~~ve~~~l~~Vy~~~p~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (493)
                      -    +++.+  ++++.+.++.-...-.+       +.|| |+. +|++ ++.++  ..+.           .+++.+..
T Consensus       183 ~~~~g~~p~alP~~~v~i~a~~~v~~~~~-------~lpETL~~-rk~~-~~~~~--~~~~-----------~~~~~~~~  240 (451)
T KOG2615|consen  183 SSISGSYPFALPCLLVFILAAGDVTFFPW-------FLPETLPL-RKRN-DEHST--LQEA-----------ADDRLALL  240 (451)
T ss_pred             HhhhccCchHHHHHHHHHHHHHHHHHHHH-------hCCccccc-hhhc-ccccc--hhhh-----------hhhhhhhc
Confidence            3    12232  23333333331211111       2343 221 2222 11000  0000           00000000


Q ss_pred             HHHHHHHHHHHhhhccccccccceeeeccc--chHHHHHHH-HHHHHhhh-hhhHHHHHHH--HcCCCchHHHHHHHHHH
Q 011118          265 LAEKRWRWKIIDWISNAPCVGAWQVYLKQE--VVLPGVSLA-LLFFTVLS-FGTLMTATLE--WEGIPAYIIGIARGISA  338 (493)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~--v~la~~ala-lLy~tVL~-f~~l~~~yl~--~~gls~~~iG~~r~~~a  338 (493)
                      +.+  +..+          ..-.|.+-.+.  ...-.+++- ++|+.+++ +.+ ...++.  .-|+++.+.|-+....+
T Consensus       241 ~~~--~~~~----------v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~-t~~~l~~~rfg~ss~~~G~vl~~tG  307 (451)
T KOG2615|consen  241 KFA--RIFK----------VAALRNPPLLDFISVLRIFGLHYFLYLELFSGLEN-TVLFLTHGRFGYSSMQQGKVLSTTG  307 (451)
T ss_pred             chh--hhhh----------hhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHh-hHHHhhcCccCCChhhheeeeehhh
Confidence            000  0111          01111121111  122233333 55555543 333 333443  36889999999998866


Q ss_pred             HHHH-HHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchH-H--HHHHHHHHHHhhhchhhhhhhhhhhhh
Q 011118          339 TIGI-AATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSL-V--AAYMLMVGVATSRLGLWMFDLSVIQQM  413 (493)
Q Consensus       339 v~Gl-lgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~-~--s~~~l~~gi~~SR~GLw~fDl~~~~l~  413 (493)
                      ++++ ..-.++|++.+..|...+-+.-..   .+..+..+.+ +.+.+. .  ...+.-..-+.-       --|.+.++
T Consensus       308 l~m~~~ql~~~~~l~~~~~~~~a~l~~~l---~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~-------vt~Lt~Lv  377 (451)
T KOG2615|consen  308 LLMLVIQLALVPILPRYKGNIKAVLLFSL---LLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV-------VTCLTSLV  377 (451)
T ss_pred             HHHHHHHHhccccccccccchhhHHHHHH---HHHHHHHHHHhccccchhhhHHHHHHHHHHHHh-------hHHHHHHH
Confidence            6665 455667777776666444433222   2333333322 222221 1  111111111111       12334444


Q ss_pred             hccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCc
Q 011118          414 QDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDF  453 (493)
Q Consensus       414 Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F  453 (493)
                      -...|+++||.++|+.+|+..++ -++-.+.|.++.+-+.-
T Consensus       378 ~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~  418 (451)
T KOG2615|consen  378 HKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGA  418 (451)
T ss_pred             HhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCC
Confidence            55669999999999999999999 77777777777764433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.3e-05  Score=84.11  Aligned_cols=396  Identities=13%  Similarity=0.132  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFI   98 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~   98 (493)
                      +.-.+.++..=-+--.-+++|.|-++.+. .-|.-..++.+..-++..=+-=-..|.+.||.+-|+.|-..++.-.+.  
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~l~e~~-~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~--  107 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPALIEDG-GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV--  107 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH--
Confidence            44466677777777888999999965554 356778888888888877777778899999998888877666322222  


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHH
Q 011118           99 VAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCK  178 (493)
Q Consensus        99 ~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~  178 (493)
                        +   +++-..     .+...+.++.   .+.|.....-.+.....+.. |-+   +++|-....-=|.    .-.+.-
T Consensus       108 --n---il~Gfs-----~s~~~~~~l~---~lng~fQg~Gwpp~~~~i~~-Wfs---r~eRG~~~siWn~----shNiGG  166 (448)
T COG2271         108 --N---ILFGFS-----PSLFLFAVLW---VLNGWFQGMGWPPCARTITH-WFS---RKERGTWWSIWNT----SHNIGG  166 (448)
T ss_pred             --H---HHHhhh-----hHHHHHHHHH---HHHHHHhcCCCcHHHHHHHH-HcC---ccccCceEEEehh----hhhccc
Confidence              1   111111     1222332222   23455555555555544433 331   2222111222222    234555


Q ss_pred             hhhhHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          179 LLAPAIT--GFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       179 l~gP~~~--G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      -+.|.++  |.+....+.+.+..+   =-.++.++..+++.+..++-.+..-++-++. ++||.+.++            
T Consensus       167 al~~~~~~la~~~~~~~w~~~f~~---pgiiaiival~~~~~~rd~Pqs~GLP~ie~~-~~d~~e~~~------------  230 (448)
T COG2271         167 ALAPLVALLAFFAFHGGWRAAFYF---PGIIAIIVALILLFLLRDRPQSEGLPPIEEY-RGDPLEIYE------------  230 (448)
T ss_pred             chHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHhCCCccccCCCCHHHh-hcCchhhhh------------
Confidence            5666666  777665566655543   2345666777777766443222211111110 101111000            


Q ss_pred             ccccchhHHHHHHHHHHHHhhhccccccccceeeeccc-chHHHHHHHHHHHHhhhhhhHHHHHHHH-cCCCchHHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQE-VVLPGVSLALLFFTVLSFGTLMTATLEW-EGIPAYIIGIAR  334 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~-v~la~~alalLy~tVL~f~~l~~~yl~~-~gls~~~iG~~r  334 (493)
                      ++++++..    + .++           .=++++++|| ++..+++..++|+-=.+...=...|+++ +|++...-+..-
T Consensus       231 ~~~~~~~l----s-~~~-----------i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~  294 (448)
T COG2271         231 EEKENEGL----T-AWQ-----------IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAI  294 (448)
T ss_pred             hhccCCCc----c-HHH-----------HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHH
Confidence            00000000    0 011           1135568898 6777788889998767777888999996 999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchH----HHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          335 GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSL----VAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       335 ~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~----~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      +.==++|+.||++.+++..|+--.|-+.-.+.. .+.+..|++..|..+..    ..+.++.+|..     +++=++-.-
T Consensus       295 ~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~-~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~-----IyGPqmLiG  368 (448)
T COG2271         295 SLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIF-MLLITASLVLYWLAPNGSYLLDAILLFIIGFL-----IYGPQMLIG  368 (448)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH-----HhhHHHHHH
Confidence            999999999999999999999866666555532 12345566666753221    12333333332     122222222


Q ss_pred             hhhhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011118          411 QQMQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLY  476 (493)
Q Consensus       411 ~l~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~  476 (493)
                      -.-=|.+|.+--|..+|.-....+++  .+..+.++.+...-+=.+.-++.+++++++..++...+.+
T Consensus       369 l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            33347789999999999999998885  6777777777665344555667777777777777777744

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.72  E-value=2.9e-05  Score=84.46  Aligned_cols=163  Identities=9%  Similarity=-0.045  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecc-cchhHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDK-LTYVKVLQIWLVTQNL   95 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr-~~R~~v~~~~~~~q~~   95 (493)
                      +.++.++...++.+.+--.+..-.+.++.+-++-|....+.....-........+..|.+.|| .+||+++..+.+...+
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            367777777777777766666667777766655554443333322333334445678999999 5999998877644433


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      .    ..   .+...   . ..+..+....   .+.+....+..+. ..++-.||.    ++++ ++..+.-+...-.-.
T Consensus       101 g----~~---l~~~~---~-~~~~~l~~~~---~l~gig~g~~~~~-~~~l~~~~f----~~~~-~~~~~~~~~~~~~~~  160 (500)
T PRK09584        101 G----YA---LVAWS---G-HDAGIVYMGM---ATIAVGNGLFKAN-PSSLLSTCY----EKDD-PRLDGAFTMYYMSIN  160 (500)
T ss_pred             H----HH---HHHHh---c-ccHHHHHHHH---HHHHHhhhcccCC-HHHHHHHhc----CCCc-hhhhhcchHHHHHHH
Confidence            2    11   11110   1 1111111111   1123333333322 223344554    2322 334444445556667


Q ss_pred             HHHhhhhHHHHHHHHhhhhHHHHH
Q 011118          176 TCKLLAPAITGFIISFVSLQASAM  199 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~~~s~~~a~~  199 (493)
                      ++..+||.++|.+.+..|++.+..
T Consensus       161 iG~~~gp~i~g~l~~~~g~~~~F~  184 (500)
T PRK09584        161 IGSFFSMLATPWLAAKYGWSVAFA  184 (500)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHH
Confidence            889999999999999888776663

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.66  E-value=0.00013  Score=79.08  Aligned_cols=152  Identities=13%  Similarity=-0.008  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWP----DSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~----~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      ...++++--.......++.|.+--+.+.    .+....+.....-.+..++..++.|.+.||++||+++..+.+.-.+..
T Consensus        21 ~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~  100 (502)
T TIGR00887        21 AGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIAT  100 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3344444444444555555653222211    122344667777778888999999999999999999877764444331


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                          .  +..+.+   .......+..+++.-.+.|.......+..... -.||.    +.   +...+..+.+.-.-...
T Consensus       101 ----~--~~~~~~---~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~-~~e~~----p~---~~Rg~~~~~~~~~~~~g  163 (502)
T TIGR00887       101 ----V--ASGLSP---GSSPKSVMATLCFWRFWLGVGIGGDYPLSAII-TSEFA----TK---KWRGAMMAAVFAMQGFG  163 (502)
T ss_pred             ----H--HHHHcc---CcccchHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHhc----Ch---hhHHHHHHHHHHHHHHH
Confidence                1  111111   11111011111111122333333333332222 23444    22   34567778888778888


Q ss_pred             HhhhhHHHHHHHH
Q 011118          178 KLLAPAITGFIIS  190 (493)
Q Consensus       178 ~l~gP~~~G~l~~  190 (493)
                      .++||.+++.+..
T Consensus       164 ~~~g~~~~~~~~~  176 (502)
T TIGR00887       164 ILAGAIVALIVLA  176 (502)
T ss_pred             HHHHHHHHHHHHH
Confidence            8899988877643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.66  E-value=2.2e-05  Score=84.09  Aligned_cols=342  Identities=14%  Similarity=0.132  Sum_probs=193.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhH-----HHHHHHHHHHHHHHH
Q 011118           25 AHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVK-----VLQIWLVTQNLSFIV   99 (493)
Q Consensus        25 s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~-----v~~~~~~~q~~~v~~   99 (493)
                      +.+-+...-.+-..-+.-|..+...=+...+|..=++.-+.-.+..|.+|..+||.++|.     =+...    .+..++
T Consensus        20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g----~ip~~i   95 (467)
T COG2211          20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG----AIPFAI   95 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH----hHHHHH
Confidence            333333333333333444555566667778888888888888899999999999876332     22222    223233


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHh
Q 011118          100 AGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKL  179 (493)
Q Consensus       100 s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l  179 (493)
                      .+.+  .+..++.....++....+.+.   +.+..-.+-++- +-+    |.++|+.+.  ++.+++|+.=+-.-..+.+
T Consensus        96 ~~~l--~F~~p~~~~~~k~~ya~vtY~---l~~l~YT~vniP-y~a----l~~~iT~d~--~ER~~l~s~R~~~~~~g~~  163 (467)
T COG2211          96 VAVL--LFITPDFSMTGKLIYALVTYM---LLGLGYTLVNIP-YGA----LGPEITQDP--QERASLTSWRMVFASLGGL  163 (467)
T ss_pred             HHHH--HHcCCCcccCcchHHHHHHHH---HHHHHHHheeCc-hhh----cchhhcCCH--HHHHHHHHHHHHHHHHHHH
Confidence            3332  112222112223332222231   122222322222 222    378887753  6788888876665555555


Q ss_pred             hhhHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccc
Q 011118          180 LAPAITGFIISFVS-------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRER  252 (493)
Q Consensus       180 ~gP~~~G~l~~~~s-------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
                      +.-.+.+.+++..+       +.....   .+-+++.+.=++|...+++|.++-+           |.+ +         
T Consensus       164 l~~~~~~plv~~~g~~~~~~g~~~~~~---~~~vi~~i~~l~~~~~v~ER~~~~~-----------~~~-~---------  219 (467)
T COG2211         164 LVAVLFPPLVKLFGGGDKALGYQGTAL---VLGVIGVILLLFCFFNVKERVVETQ-----------PTK-T---------  219 (467)
T ss_pred             HHHHHHHHHHHHhCCCcchhhHHHHHH---HHHHHHHHHHHHHHHHhhcccCccc-----------cCc-c---------
Confidence            55555555555543       444444   4445555555667777766664211           000 0         


Q ss_pred             ccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhh-hhhHHHHHHHH-cCCCchHH
Q 011118          253 ESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLS-FGTLMTATLEW-EGIPAYII  330 (493)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~-f~~l~~~yl~~-~gls~~~i  330 (493)
                                +.  .    .+         ..+.+...++++.++--+...++++.... -++.++-|... .|-++...
T Consensus       220 ----------~~--~----~~---------~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~  274 (467)
T COG2211         220 ----------GV--K----LK---------LKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFA  274 (467)
T ss_pred             ----------cc--c----cc---------HHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHH
Confidence                      00  0    00         12223344677777766665555554443 34466666664 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      +.....+..+.+.+....|+|.||+|-.+.-.++..   +....++..++.+  ..+..+.+...+...+|.-..+....
T Consensus       275 ~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~---~~~i~~~~~~f~~--~~~~~l~~~~~~i~~~g~~~~~~l~w  349 (467)
T COG2211         275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL---LLAVGYLLLYFTP--AGSVVLIVVALIIAGVGTGIANPLPW  349 (467)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH---HHHHHHHHHHhhc--CcchHHHHHHHHHHHHHhhccccccH
Confidence            999999999999999999999999999888877754   3334444445554  22333333444455567777788888


Q ss_pred             hhhhccCCCCcc---hhHHHHHHHHHHhh
Q 011118          411 QQMQDLVPESDR---CVVGGVQNSLQSTM  436 (493)
Q Consensus       411 ~l~Qe~vp~~~r---G~v~gv~~sl~~~f  436 (493)
                      .++=+.+|.+|-   -|..|+..+.+.++
T Consensus       350 am~~d~vDyge~~TG~R~eGi~~s~~tF~  378 (467)
T COG2211         350 AMVADTVDYGEWKTGVRREGIVYSGMTFF  378 (467)
T ss_pred             HHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence            888887765432   24445555554444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.65  E-value=8.9e-05  Score=80.54  Aligned_cols=162  Identities=10%  Similarity=-0.024  Sum_probs=89.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecc-cchhHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDK-LTYVKVLQIWLVTQNL   95 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr-~~R~~v~~~~~~~q~~   95 (493)
                      |..+.+....+..+++--.+.--++.++..-++-+.-..+.....-.+...++.+..|.+.|| .+|||++....++..+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            467777777777777766666566666666554343333222222333344445678999999 8999999888755544


Q ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHH
Q 011118           96 SFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        96 ~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl  175 (493)
                      ...   .   + ...   .......+....    +.+..+.+..+. ..++-.|+.|    +++ ++..+.-+...-.-.
T Consensus        94 g~~---~---~-~~~---~~~~~ll~~~~~----l~~ig~g~~~~~-~~~li~~~~p----~~~-~~~~~~~~~~~~~~n  153 (489)
T PRK10207         94 GYF---M---T-GMS---LLKPDLIFIALG----TIAVGNGLFKAN-PASLLSKCYP----PKD-PRLDGAFTLFYMSIN  153 (489)
T ss_pred             HHH---H---H-HHh---ccchhHHHHHHH----HHHhccccccCC-HHHHHHHhcC----CCc-hhhhcchhHHHHHHH
Confidence            311   1   1 111   111111111111    123333333322 2333345552    322 233444445555667


Q ss_pred             HHHhhhhHHHHHHHHhhhhHHHH
Q 011118          176 TCKLLAPAITGFIISFVSLQASA  198 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~~~s~~~a~  198 (493)
                      ++..+||.++|.+.+..|.+.+.
T Consensus       154 ig~~~g~~l~g~l~~~~gw~~~F  176 (489)
T PRK10207        154 IGSLISLSLAPVIADKFGYSVTY  176 (489)
T ss_pred             HHHHHHHHHHHHHHHhhChHHHH
Confidence            78889999999999999977655

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.60  E-value=0.00013  Score=78.65  Aligned_cols=76  Identities=11%  Similarity=-0.218  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVT   92 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~   92 (493)
                      |++..-+.+-+++=+.--+|.-..+.+...-++=|.-..+.....-.+...++-.+.|.++||++.|+++..+.+.
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll  109 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI  109 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            5555566666666555555555444432222555666777777767777777777789999999988888777643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.59  E-value=1.8e-05  Score=83.07  Aligned_cols=158  Identities=11%  Similarity=0.041  Sum_probs=102.0

Q ss_pred             eeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 011118          288 QVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSI  365 (493)
Q Consensus       288 ~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~  365 (493)
                      |...+|+.+.--+.-.++|. -+-.--.....|.+ ..|++..++.++...-.+.++.|++++|+|.+|+|..+.-..++
T Consensus       246 k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l  325 (438)
T COG2270         246 KEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL  325 (438)
T ss_pred             HHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH
Confidence            33445553333333335553 12222335778999 69999999999999999999999999999999999998877777


Q ss_pred             HHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHH
Q 011118          366 WSQWFCLLICVASIWIHNS-LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTM  443 (493)
Q Consensus       366 ~~q~~~L~~~v~~~~~~~~-~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~  443 (493)
                      .   +....|+...+..++ ..-++.++.|..  ==|.++   ...+++=+.+|+++-|+.+|..+-.-... -++.+..
T Consensus       326 v---i~~~~~~~~~~~~~~~~f~i~gll~g~s--~G~~qA---~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv  397 (438)
T COG2270         326 V---ILSIAALYLIFLEGELDFWILGLLVGTS--LGGAQA---SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV  397 (438)
T ss_pred             H---HHHHHHHHHHHccccHHHHHHHHHHHHh--cchHHH---HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence            5   345556665555332 112222333322  222332   33567778999999999999877665555 5555666


Q ss_pred             HHhccCCCCc
Q 011118          444 GIIISNPQDF  453 (493)
Q Consensus       444 ~ii~~~p~~F  453 (493)
                      +++-.-.++.
T Consensus       398 ~v~t~iTg~~  407 (438)
T COG2270         398 AVITQITGSS  407 (438)
T ss_pred             HHHHHHhcch
Confidence            6555444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.41  E-value=0.00027  Score=74.20  Aligned_cols=318  Identities=12%  Similarity=0.083  Sum_probs=178.0

Q ss_pred             hhccceeeecccc-----hhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 011118           69 FGPIVGHWVDKLT-----YVKV-LQIWLVTQNLSFIVAGVSVITLLFFS--SLKSTNFIAFVLLVILTNISGAVGVISTL  140 (493)
Q Consensus        69 fg~~vG~~vDr~~-----R~~v-~~~~~~~q~~~v~~s~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~g~~~~l~~~  140 (493)
                      +-++.|+..|+++     ||.- ++...+.+.....+.....+. +-.+  ......|.......+...+.|..-..+++
T Consensus        30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~-l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T  108 (403)
T PF03209_consen   30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLL-LAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT  108 (403)
T ss_pred             HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHH-HcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence            5789999999999     6665 444445555543433333121 1110  11112333333333222334444444444


Q ss_pred             hhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          141 AGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVY  220 (493)
Q Consensus       141 a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy  220 (493)
                      + ..+.-.|    ++++   ++..+.=+.+=..=.+.-+++.++.|.+..-+++.-=.-++...-.+++..-...+.++.
T Consensus       109 ~-~lALl~D----~~~e---~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E  180 (403)
T PF03209_consen  109 S-FLALLAD----LAPE---ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQE  180 (403)
T ss_pred             H-HHHHHHh----cCCH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4 2332222    2222   456677777777778888899999998877666543333333333444444444444443


Q ss_pred             hhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHH
Q 011118          221 KGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGV  300 (493)
Q Consensus       221 ~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~  300 (493)
                      +|.|...      +.   + + ++                      +..             .++-|+.+.++|--+--+
T Consensus       181 ~r~~~~~------~~---~-~-~~----------------------~~~-------------f~~a~~~~~~~~~a~~f~  214 (403)
T PF03209_consen  181 PRRSRRA------AA---A-E-RP----------------------RPP-------------FREAWRQVWASPQARRFF  214 (403)
T ss_pred             cCCcccc------cC---C-C-CC----------------------Ccc-------------HHHHHHHHHhCCChhHHH
Confidence            3333211      00   0 0 00                      000             234455566777666555


Q ss_pred             HHHHHHHHh-hhhhhHHHHHHHH-cCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHH
Q 011118          301 SLALLFFTV-LSFGTLMTATLEW-EGIPAYI---IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLIC  375 (493)
Q Consensus       301 alalLy~tV-L~f~~l~~~yl~~-~gls~~~---iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~  375 (493)
                      .+-++.+.- ..=|.++=.|.-+ .|+|.++   +..+.+.|...|+..+  .-.+.+|.+..|+..++...-..++..-
T Consensus       215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~--g~~l~~~~~~~~~a~~G~~~~~~~f~li  292 (403)
T PF03209_consen  215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLA--GFLLSRRLGKKRTAALGCLLGALAFALI  292 (403)
T ss_pred             HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence            555555332 2345577778887 7998764   5566666666666443  2234568888887776665222222221


Q ss_pred             HHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          376 VASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       376 v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                         .+. ++..+...|-.+..+-.+|-=.|.......+-+.+++++-|...|.-...|... -++.+..|.+.
T Consensus       293 ---i~a-~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~  361 (403)
T PF03209_consen  293 ---ILA-GPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALR  361 (403)
T ss_pred             ---HHH-HhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111 122234555566666667777889999999999999999999999999998888 77777777553

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.31  E-value=0.00017  Score=76.52  Aligned_cols=184  Identities=13%  Similarity=0.057  Sum_probs=103.3

Q ss_pred             ecccchHHHHHHHHHH-HHhhhhhhHHHHHHH----HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 011118          291 LKQEVVLPGVSLALLF-FTVLSFGTLMTATLE----WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSI  365 (493)
Q Consensus       291 ~~q~v~la~~alalLy-~tVL~f~~l~~~yl~----~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~  365 (493)
                      ++.|.++....+...- ...-.||.+...|.+    +.+.+...+|...+++.+.+...=+..|++.+|+|..+.-+++.
T Consensus       217 ~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag  296 (412)
T PF01306_consen  217 FKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAG  296 (412)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHH
Confidence            4566665544443221 222347777777776    45677789999999999999999999999999999887765444


Q ss_pred             HHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHH--HHHHHhhHHHHHH
Q 011118          366 WSQWFCLLICVASIWIHNSL-VAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQ--NSLQSTMDLMAYT  442 (493)
Q Consensus       366 ~~q~~~L~~~v~~~~~~~~~-~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~--~sl~~~f~l~~~~  442 (493)
                      ..  .++-.. .+-+.+++. ....=++=|   --++  .+-++..+++++..|++...++..+-  .+.+-..-+++..
T Consensus       297 ~i--~~iRi~-~~~~~~~~~~i~~~klLH~---~e~~--l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~  368 (412)
T PF01306_consen  297 VI--MAIRII-GSGFATNPWVISLIKLLHA---LEFP--LLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL  368 (412)
T ss_dssp             HH--HHHHHH-HHHT--SHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HH--HHHHHH-HHhhhcchHHHHHHHHHHH---HHHH--HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            31  011111 112222221 111111111   1233  34788999999999988766655553  2333333556667


Q ss_pred             HHHhccCCCC-chHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCh
Q 011118          443 MGIIISNPQD-FWKLILISVIVVTLAAILYTFH-LYRIRKHLFHF  485 (493)
Q Consensus       443 ~~ii~~~p~~-F~~l~~~S~~~V~~~~~l~~~~-~~~~Rghl~h~  485 (493)
                      .|.+..+-+- -.++++..+   .....++..+ +++.++|.+|-
T Consensus       369 ~G~lyd~~G~~~tylimg~i---v~~~~li~~f~l~~~~~~~~~~  410 (412)
T PF01306_consen  369 AGYLYDRIGFQHTYLIMGLI---VLPFTLISAFTLKKDKKQIVHP  410 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHS--SSSTTCCC
T ss_pred             HHhhHhhcCcHHHHHHHHHH---HHHHHHHheeeecCCCcccccC
Confidence            7777655542 234443333   2223344444 57778888884

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.14  E-value=0.014  Score=63.75  Aligned_cols=164  Identities=10%  Similarity=-0.039  Sum_probs=91.8

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc-chhHHHHHHHHHHH
Q 011118           16 SFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL-TYVKVLQIWLVTQN   94 (493)
Q Consensus        16 ~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~-~R~~v~~~~~~~q~   94 (493)
                      .+.+..++.-.+..+.+.-....-.|+++..-++-+.-..+..-..-.+...+..+..|.+.||. +|||++..+.+...
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~   87 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA   87 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence            34666666666666666666666778888776555555555555555566666777899999999 99999887765544


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHH
Q 011118           95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID  174 (493)
Q Consensus        95 ~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriD  174 (493)
                      +...      ++ ...   .......+..+...    ++...++.+ +..++-.|+.    ++++ ++....-+..-..-
T Consensus        88 lg~l------ll-~~~---~~~~~~~~l~l~li----~iG~G~~~~-~~~alv~elf----p~~~-~~R~sgf~i~Y~~~  147 (493)
T PRK15462         88 IGHV------VL-GAS---EIHPSFLYLSLAII----VCGYGLFKS-NVSCLLGELY----EPTD-PRRDGGFSLMYAAG  147 (493)
T ss_pred             HHHH------HH-HHh---hcchhHHHHHHHHH----HHhcccccc-cHHHHHHHHC----CCCC-ccccceehHHHHHH
Confidence            4311      11 111   10111111111111    111122221 1222323333    2221 13344444444444


Q ss_pred             HHHHhhhhHHHHHHHHhhhhHHHHH
Q 011118          175 LTCKLLAPAITGFIISFVSLQASAM  199 (493)
Q Consensus       175 l~~~l~gP~~~G~l~~~~s~~~a~~  199 (493)
                      .+.-.++|.++|.+.+..|.+.+..
T Consensus       148 nlG~~iap~l~g~L~~~~Gw~~~F~  172 (493)
T PRK15462        148 NVGSIIAPIACGYAQEEYSWAMGFG  172 (493)
T ss_pred             HHHHHHHHHHHHHHHhhhChHHHHH
Confidence            5688999999999988778776653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.10  E-value=6.2e-05  Score=84.35  Aligned_cols=73  Identities=10%  Similarity=0.029  Sum_probs=58.9

Q ss_pred             cceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHH-HHHHHHHHHHHHHhhhchh
Q 011118          286 AWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEW-EGIPAYIIGIARGISAT-IGIAATILYPILQSRISTL  358 (493)
Q Consensus       286 g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av-~GllgT~~~~~l~~riGl~  358 (493)
                      .++..+++|.+........+.. ...++...+..|+.+ .|+++...|.+.+...+ ++++|.++.+++.+|++..
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            3455688998888777766654 445788889999985 89999999999988766 5689999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.10  E-value=0.0079  Score=62.49  Aligned_cols=361  Identities=14%  Similarity=0.163  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhh---ccceeeecccchhHHHHHHHHHHHHH
Q 011118           20 TYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFG---PIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        20 ~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg---~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      ..+.++=.+-..|=|.---+++-.+-++-.+.=+-.+.-|+.+++|.+.|+   |+..++.-|..-.|.+-.+.    +.
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~L----ll   86 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLAL----LL   86 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHH----HH
Confidence            566677777777777766666666777777766667777888888877655   45555544444334333332    11


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      +++.+.     +..   ....+.    ++.-+.+.|+.-.+.++-.-..|.||.         |.+...+-..-...=..
T Consensus        87 i~~G~~-----iR~---~~~~~~----L~~gt~l~G~gIav~nVLLPslIK~~F---------pk~~~~mtglYs~sl~~  145 (395)
T COG2807          87 IAAGIL-----IRS---LGGLPL----LFLGTLLAGAGIAVINVLLPSLIKRDF---------PKRVGLMTGLYSTSLGA  145 (395)
T ss_pred             HHHHHH-----HHh---cccHHH----HHHHHHHHHhhHHHHHHhhhHHHHhhc---------ccchhhHHhHHHHHHHH
Confidence            111111     110   111222    222233334444444555444444443         23333333333333344


Q ss_pred             HHhhhhHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhhhhhhhccCCCcccccccCCcccccc
Q 011118          177 CKLLAPAITGFIISFV-SLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPAL-AESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~-s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      +.-+||.+.-.+.+.. |.+.++.   .|-..+++.-..+       .|+. +++   .     ++..+.     .    
T Consensus       146 ~aaLaa~lavpla~~~~gW~~aL~---~WAl~allAl~~W-------lPq~~r~~---~-----~~~~~~-----~----  198 (395)
T COG2807         146 GAALAAALAVPLAQHSGGWRGALG---FWALLALLALLIW-------LPQALREQ---A-----ASIATK-----L----  198 (395)
T ss_pred             HHHHHhhhhhHHHHhhccHHHHHH---HHHHHHHHHHHHH-------hhhccccc---c-----cccccc-----c----
Confidence            5555666666666665 4665554   4555555433322       2331 110   0     000000     0    


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHH----HHHHHHhhhhhhHHHHHHHHcCCCchHH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSL----ALLFFTVLSFGTLMTATLEWEGIPAYII  330 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~al----alLy~tVL~f~~l~~~yl~~~gls~~~i  330 (493)
                                                    .-=+..+|+|.-.....+    +++|.++.+   =+..++.++|+|+.+-
T Consensus       199 ------------------------------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~---WLP~ili~~G~sa~~a  245 (395)
T COG2807         199 ------------------------------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIG---WLPAILIDRGLSAAEA  245 (395)
T ss_pred             ------------------------------ccccccccCchhHHHHHHHHhhHHHHHHHHH---HHHHHHHHcCCCHHHh
Confidence                                          000112344421111111    334433333   3777888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWMFDLSV  409 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~  409 (493)
                      |.+.+...+.++..++..|.+.+|..--|--.....   .|-..+.+.+ +.|...+-...++.|+-   - =-.|-++.
T Consensus       246 G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~---~~~l~G~~G~~~~P~~~~~lw~~llG~G---~-G~~F~laL  318 (395)
T COG2807         246 GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL---LLMLVGLVGLLLAPGQLPILWALLLGLG---Q-GGAFPLAL  318 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHhCc---c-chHHHHHH
Confidence            999999999999999999999999765555443332   2333333333 34433222223344432   1 13578888


Q ss_pred             hhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011118          410 IQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFH  474 (493)
Q Consensus       410 ~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~  474 (493)
                      +-+.++.-++++-++-+|.-.+.-++. -.+-+++|.+-...+.|...++.=+....  ..+.+.+
T Consensus       319 ~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i--~m~i~Gl  382 (395)
T COG2807         319 TLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL--LMLIFGL  382 (395)
T ss_pred             HHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH--HHHHHHh
Confidence            888899999999999999999999999 99999999999999998877655444433  3444444

>TIGR01272 gluP glucose/galactose transporter

Probab=98.07  E-value=0.0031  Score=64.33  Aligned_cols=151  Identities=11%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             ecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          291 LKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW---EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       291 ~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~---~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      +++|.+.-++..-++|.-+ -+..+-+..|+++   .|+++...+...+....+..+|.++.+++.+|+|..|...++..
T Consensus       137 ~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~  216 (310)
T TIGR01272       137 FQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAF  216 (310)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            3455555444444556433 4678889999984   49999999999999999999999999999999998887655544


Q ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHH
Q 011118          367 SQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGI  445 (493)
Q Consensus       367 ~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~i  445 (493)
                      ...++   ..+....++......+++.|     +|.-..=.+.....++..|++ .|+.+++. .....- -+...+.|.
T Consensus       217 l~~~~---~~l~~~~~~~~~~~~~~l~g-----~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~  286 (310)
T TIGR01272       217 LAVLL---SIGAALTHGYVAMWFVLALG-----LFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGS  286 (310)
T ss_pred             HHHHH---HHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHH
Confidence            22211   11111222211112222223     232222345555555556653 45666663 333332 445556676


Q ss_pred             hccCCC
Q 011118          446 IISNPQ  451 (493)
Q Consensus       446 i~~~p~  451 (493)
                      +...-+
T Consensus       287 lad~~g  292 (310)
T TIGR01272       287 LADCLG  292 (310)
T ss_pred             HHHhcc
Confidence            665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.07  E-value=0.00014  Score=73.42  Aligned_cols=132  Identities=10%  Similarity=0.029  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhc-chHHHHHHH
Q 011118          313 GTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIH-NSLVAAYML  391 (493)
Q Consensus       313 ~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~-~~~~s~~~l  391 (493)
                      ...+..|..+.|.++.++|++.++..++..++....+++.+|+|..|...++.....++   +....+.+ ....+...+
T Consensus        19 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   95 (365)
T TIGR00900        19 QVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL---VAVLPFVALLGGLNIWQV   95 (365)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH---HHHHHHHHHcCCCcHHHH
Confidence            34556688889999999999999999999999999999999999888776655422211   11111111 000123333


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH-HHHHHHHhc
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL-MAYTMGIII  447 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l-~~~~~~ii~  447 (493)
                      ..+..+..++.-.++.+...++.|..|+++|++++|...+..++..+ +..+.+.+.
T Consensus        96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        96 YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455566667888999999999999999999999988887743 344444444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.02  E-value=0.00022  Score=73.00  Aligned_cols=131  Identities=12%  Similarity=0.055  Sum_probs=94.2

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      +......+.++.|+++.++|.+.++..++...+..+.+++.+|+|..|....+...   +........+.+ +   ...+
T Consensus        24 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~---~~~~~~~~~~~~-~---~~~~   96 (385)
T TIGR00710        24 YLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFI---FALSSLGLALSN-N---IETL   96 (385)
T ss_pred             hcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH---HHHHHHHHHHHc-c---HHHH
Confidence            33445556668999999999999999999999999999999999987776655431   112222222222 2   2223


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      ..+.++..+|.-..+.....+++|..|+++||+++|...+..++. -++..+.+.+.+.
T Consensus        97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  155 (385)
T TIGR00710        97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW  155 (385)
T ss_pred             HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556666778889999999999999999999999888877 4555666665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.99  E-value=0.00038  Score=73.17  Aligned_cols=128  Identities=16%  Similarity=0.063  Sum_probs=92.0

Q ss_pred             hhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          313 GTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       313 ~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      -+.+..|+. +.|+++..+|+..+...+.+.....+.+++.+|+|..|...++.....+   .++...+.+ +.+.   +
T Consensus        30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~---~~~~~~~~~-~~~~---l  102 (400)
T PRK11646         30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA---GFATMAIAH-EPWL---L  102 (400)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH---HHHHHHHhc-cHHH---H
Confidence            345556665 6899999999999999999999999999999999988877766653222   122222222 2222   2


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      ..+.++..++--.++...+.++++.+|+++||+.+|...+..++. .++..+.+.+.
T Consensus       103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        103 WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333334444567888899999999999999999999988888 66667777776

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.96  E-value=8.9e-05  Score=77.88  Aligned_cols=160  Identities=7%  Similarity=-0.001  Sum_probs=102.0

Q ss_pred             ceeeecccchHHHHHHHHHHHHhhhh-hhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 011118          287 WQVYLKQEVVLPGVSLALLFFTVLSF-GTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSI  365 (493)
Q Consensus       287 ~~~y~~q~v~la~~alalLy~tVL~f-~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~  365 (493)
                      ++...++|.++..+...++++...++ ......|.++.+.++.+.|..-+...++.++++...+++.+|+|..|....+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~   89 (417)
T PRK10489         10 LSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLAR   89 (417)
T ss_pred             HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehH
Confidence            33344667777666666666544443 33455566678889999999999999999999999999999999877666554


Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHH
Q 011118          366 WSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMG  444 (493)
Q Consensus       366 ~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~  444 (493)
                      ....++........+...+  +...+....++..++--.+..+...++++.+|+++|++.++......++. -++..+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g  167 (417)
T PRK10489         90 GTCGLGFIGLALNAFLPEP--SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG  167 (417)
T ss_pred             HHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence            4222222111111111111  11122222233333333456777889999999999999999987766665 55566666


Q ss_pred             Hhcc
Q 011118          445 IIIS  448 (493)
Q Consensus       445 ii~~  448 (493)
                      .+..
T Consensus       168 ~l~~  171 (417)
T PRK10489        168 LLIA  171 (417)
T ss_pred             HHHH
Confidence            6544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.96  E-value=0.00025  Score=71.34  Aligned_cols=127  Identities=14%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             hHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 011118          314 TLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLM  392 (493)
Q Consensus       314 ~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~  392 (493)
                      ..+..++. +.|.++.++|+..++..++..++....+++.+|+|..|....+.....++   +....+.++ .+   .++
T Consensus        17 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~---~~~~~~~~~-~~---~~~   89 (352)
T PF07690_consen   17 PALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG---SLLLAFASN-FW---LLL   89 (352)
T ss_dssp             HHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH---HHHHHHHCC-HH---HHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH---HHHhhhhhh-HH---HHh
Confidence            34442444 68999999999999999999999999999999999888777776643333   112122222 12   344


Q ss_pred             HHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHH-HHHHHhc
Q 011118          393 VGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMA-YTMGIII  447 (493)
Q Consensus       393 ~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~-~~~~ii~  447 (493)
                      .+.++..+|--.++.+...++.+..|+++|++.+|...+..++..+.. .+.+.+.
T Consensus        90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen   90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence            555566666677899999999999999999999999999988885544 4444554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.94  E-value=0.00016  Score=73.24  Aligned_cols=131  Identities=15%  Similarity=-0.017  Sum_probs=90.4

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      ++.....+.++.|+++.++|...++..++..++....+++.+|+|..|.-.++...   +........+.+    +...+
T Consensus        13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~---~~~~~~~~~~~~----~~~~~   85 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVI---WGVFTGLQAFAG----AYVSL   85 (399)
T ss_pred             hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHH---HHHHHHHHHHHc----CHHHH
Confidence            33334444456899999999999999999999999999999999977776655542   222222222222    22233


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhccC
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIIISN  449 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~~~  449 (493)
                      ..+.++..+|.-.+..+...+..|..|+++||+.+|...+..++.. ++..+.+.+...
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  144 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH  144 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence            3344444555556788889999999999999999999888888774 444444544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.94  E-value=0.00044  Score=73.37  Aligned_cols=138  Identities=15%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             HHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 011118          304 LLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN  383 (493)
Q Consensus       304 lLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~  383 (493)
                      +.|+....++..+..+..+.|+++.+.|.+.+...++..++....+++.+|+|..|...++..   .+....+...+.+ 
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~---~~~~~~~~~~~~~-  109 (434)
T PRK11663         34 LFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI---ATGIINILFGFSS-  109 (434)
T ss_pred             HHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH---HHHHHHHHHHHHh-
Confidence            334444466777788888899999999999999999999999999999999998887665554   1222222222222 


Q ss_pred             hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          384 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       384 ~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      +.+...   ...++.+++.-..-.+...++++..|+++||+..|...+.+++. -++..+.+.+.+
T Consensus       110 ~~~~l~---~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663        110 SLWAFA---LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHH---HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111   11111222221223566788899999999999999998888777 555566666654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.91  E-value=0.00073  Score=70.35  Aligned_cols=127  Identities=17%  Similarity=0.035  Sum_probs=87.9

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      .++.....+.++.|+++.++|...+...++.+++.+..+++.+|+|..|...++.....   ...+...+.+ +.   ..
T Consensus        33 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~-~~---~~  105 (406)
T PRK11551         33 SAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG---LFSLATAQAW-DF---PS  105 (406)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH---HHHHHHHHhc-cH---HH
Confidence            34555666667899999999999999999999999999999999998888776654221   1112222222 21   12


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                      ++.+.++..++.-........+++|..|+++||+.+|................+
T Consensus       106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551        106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333333444445677788999999999999999998887766654444444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.90  E-value=0.00079  Score=67.19  Aligned_cols=131  Identities=15%  Similarity=0.073  Sum_probs=96.3

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      ........|.++.|.++.++|...+...++.+.+....+++.+|+|..|.-.++.....++..   .....+    +...
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~---~~~~~~----~~~~   89 (352)
T cd06174          17 LLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSL---LLAFAS----SLWL   89 (352)
T ss_pred             hhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHH---HHHHhc----cHHH
Confidence            456677888888999999999999999999999999999999999988866655542222221   111121    2233


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      +..+..+..++.-.++.....+..|..|+++|++.++......++. -++..+.+.+.+
T Consensus        90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555556666778899999999999999999999998888777 444455555544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.88  E-value=0.00012  Score=74.34  Aligned_cols=130  Identities=8%  Similarity=-0.072  Sum_probs=90.6

Q ss_pred             HHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 011118          304 LLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN  383 (493)
Q Consensus       304 lLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~  383 (493)
                      ..|+..-.++..+..+..+.|+++.++|.+.++..++..++.+..+++.+|+|..+...++.....   ...+...+.+ 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~-   81 (379)
T TIGR00881         6 AYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCA---IVNLFFGFST-   81 (379)
T ss_pred             HHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHH---HHHHHHHHhh-
Confidence            334444456666664445689999999999999999999999999999999998887766554221   2222222222 


Q ss_pred             hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHH
Q 011118          384 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMA  440 (493)
Q Consensus       384 ~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~  440 (493)
                         +...++.+.++..+|.-..+.....++.|..|+++||+..|...+..++...+.
T Consensus        82 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  135 (379)
T TIGR00881        82 ---SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLL  135 (379)
T ss_pred             ---hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHH
Confidence               222333344444455555678888899999999999999998888777764333

>TIGR00895 2A0115 benzoate transport

Probab=97.87  E-value=0.00049  Score=70.33  Aligned_cols=130  Identities=15%  Similarity=0.073  Sum_probs=92.2

Q ss_pred             hHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 011118          314 TLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMV  393 (493)
Q Consensus       314 ~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~  393 (493)
                      ..+..+.++.|+++..+|.+.+...++.+++.++.+++.+|+|..+...++.....++   .......+ +   ...+..
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~---~~~~~~~~-~---~~~~~~  110 (398)
T TIGR00895        38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF---TLLCALAT-N---VTQLLI  110 (398)
T ss_pred             hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHcc-c---hHHHHH
Confidence            3445555578999999999999999999999999999999999777766655422221   11112222 2   222333


Q ss_pred             HHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCC
Q 011118          394 GVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNP  450 (493)
Q Consensus       394 gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p  450 (493)
                      +.++..+|.-..+.....++.|..|+++||+.+|...+.+.+. -++..+.+.+.+..
T Consensus       111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  168 (398)
T TIGR00895       111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF  168 (398)
T ss_pred             HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence            4444556666678889999999999999999999988888776 55566666665543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.043  Score=59.62  Aligned_cols=149  Identities=13%  Similarity=0.107  Sum_probs=88.8

Q ss_pred             ccceeeecccchHHHHHHHHHHHHhhhhhh------HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 011118          285 GAWQVYLKQEVVLPGVSLALLFFTVLSFGT------LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTL  358 (493)
Q Consensus       285 ~g~~~y~~q~v~la~~alalLy~tVL~f~~------l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~  358 (493)
                      ..++.++++|..|-.+...+......-|++      -.+..+++.|+++..--..-....+.-+..|++++++..|+|-.
T Consensus       256 ~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR  335 (485)
T KOG0569|consen  256 ISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR  335 (485)
T ss_pred             CcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            456777777777766444433332222322      22333446799998888888887888899999999999999944


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhh-cch-HH----HHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHH
Q 011118          359 RTGLWSIWSQWFCLLICVASIWI-HNS-LV----AAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSL  432 (493)
Q Consensus       359 r~g~~~~~~q~~~L~~~v~~~~~-~~~-~~----s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl  432 (493)
                      .--+.+...-.+++..-...... ... .+    .+...+..++...+|+   ...-.-+..|.+|++.|..+.++-.+.
T Consensus       336 pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~---gpi~~fi~aELf~~~~R~aa~s~~~~~  412 (485)
T KOG0569|consen  336 PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGP---GPIPWFIGAELFPQSARSAAQSVATAV  412 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCC---CchhHHHHHHhCCccchHHHHHHHHHH
Confidence            44444443222222221111111 111 12    2222333333333332   344556788999999999999999998


Q ss_pred             HHhh
Q 011118          433 QSTM  436 (493)
Q Consensus       433 ~~~f  436 (493)
                      |++.
T Consensus       413 ~w~~  416 (485)
T KOG0569|consen  413 NWLS  416 (485)
T ss_pred             HHHH
Confidence            8877

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.79  E-value=0.005  Score=65.92  Aligned_cols=366  Identities=13%  Similarity=0.159  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011118           37 EFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLT-----YVKVLQIWLVTQNLSFIVAGVSVITLLFFS  111 (493)
Q Consensus        37 ~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~-----R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~  111 (493)
                      ..++.-++-.-+.-+.-..+.|....++|..+ -|+.|.+.|..|     ||.=+.++-+...++    +.  .+.+.+.
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~----~~--~~~~~~~   81 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVS----AL--VLALLPA   81 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHH----HH--HHHhccc
Confidence            34445556666677778888888888888887 999999999996     444454444332221    11  1222221


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHh
Q 011118          112 SLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISF  191 (493)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~  191 (493)
                        ...+......++   ++......+++++..--     ++..+++++ +.-.++.+.......+..++|-.++|.+...
T Consensus        82 --~~~s~~~~~~~l---~la~~g~a~~DV~aDa~-----vvE~~~~~p-~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen   82 --SESSAAIAVVLL---FLASFGYAFADVAADAL-----VVELARREP-ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             --ccchhhhHHHHH---HHHHHHHHHHHHhhhHH-----HHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence              111111211222   12233345555554432     333344443 4455677777788888899998899998887


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHH
Q 011118          192 VSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWR  271 (493)
Q Consensus       192 ~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (493)
                      .++.....+....-.+..+....+       .+| +. ++++.+. .....++                ....  .    
T Consensus       151 ~~~~~~f~i~~~~~~l~~~~~~~~-------~~e-~~-~~~~~~~-~~~~~~~----------------~~~~--~----  198 (433)
T PF03092_consen  151 FGPQGVFLISAALPLLMLIVALFL-------LEE-RK-VRPADEV-FSFGKEE----------------VPCL--F----  198 (433)
T ss_pred             CCCeEEehHHHHHHHHHHHHHHHh-------hhh-cc-ccccchh-hcccccc----------------cchh--h----
Confidence            775544322222222222211111       121 10 0000000 0000000                0000  0    


Q ss_pred             HHHHhhhccccccccceeeecccchHHHHHHHHHHHHhhhhhhHHHHHH-H-HcC---CCchHHHHHHHHHHHHHHHHHH
Q 011118          272 WKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFTVLSFGTLMTATL-E-WEG---IPAYIIGIARGISATIGIAATI  346 (493)
Q Consensus       272 ~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~tVL~f~~l~~~yl-~-~~g---ls~~~iG~~r~~~av~GllgT~  346 (493)
                      ....+.     +.+-|+..-+..++.+.+-+-+++....+.+.-...|. + ..+   +++..+|....+|++++++|++
T Consensus       199 ~~~~~~-----~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~  273 (433)
T PF03092_consen  199 GSFREQ-----LSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGIL  273 (433)
T ss_pred             HHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            000111     22333333333355555422222211122221111122 2 366   8999999999999999999999


Q ss_pred             HHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcc---hH-HH--HHHHHH---HHHhhhchhhhhhhhhhhhhhcc
Q 011118          347 LYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHN---SL-VA--AYMLMV---GVATSRLGLWMFDLSVIQQMQDL  416 (493)
Q Consensus       347 ~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~---~~-~s--~~~l~~---gi~~SR~GLw~fDl~~~~l~Qe~  416 (493)
                      +|....++....+.-.++...   .....+.-. +...   .. .+  .+.+..   .-+..++..    +-..-+.=|.
T Consensus       274 ~y~~~~~~~~~R~~~~~t~~~---~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~----mP~lvl~a~l  346 (433)
T PF03092_consen  274 LYRKYFSNWSWRRIFVVTTLV---SVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF----MPSLVLAARL  346 (433)
T ss_pred             HHHHHHhCCCHHHHHHHHHHH---HHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH----HHHHHHHHHH
Confidence            999999988865554433321   111111100 0000   00 00  000000   011111111    2222334467


Q ss_pred             CCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc----CCCCc---hHHHHHHHHHH
Q 011118          417 VPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS----NPQDF---WKLILISVIVV  464 (493)
Q Consensus       417 vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~----~p~~F---~~l~~~S~~~V  464 (493)
                      +|+..-|.+.|...|..|+. ++.+.+...+..    +-++|   +++++++...-
T Consensus       347 cP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~  402 (433)
T PF03092_consen  347 CPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ  402 (433)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence            89999999999999999998 444444443322    23334   45555544444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10054 putative transporter; Provisional

Probab=97.77  E-value=0.002  Score=67.60  Aligned_cols=129  Identities=15%  Similarity=0.122  Sum_probs=88.7

Q ss_pred             hhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          312 FGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       312 f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      ..+.+..|+. +.|+++..+|+..++..+.++++....+++.+|+|-.|...++...   +....+...+.+ +.+...+
T Consensus        26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~  101 (395)
T PRK10054         26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA---FASGFIAIPLVN-NVTLVVL  101 (395)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH---HHHHHHHHHHHh-HHHHHHH
Confidence            3456778887 4899999999999999999999999999999999987766655542   222222223333 2222211


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                         +..+-..+...+..+..+...+.+|+++||+..|..++..++. -++..+.+.+.
T Consensus       102 ---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        102 ---FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1111123334567778888889999999999999999888877 44445555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.77  E-value=0.0012  Score=68.74  Aligned_cols=136  Identities=8%  Similarity=0.018  Sum_probs=94.9

Q ss_pred             hhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc-hHHHHHH
Q 011118          313 GTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN-SLVAAYM  390 (493)
Q Consensus       313 ~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~-~~~s~~~  390 (493)
                      ...+..|++ +.|.|+.++|+..++..++..++....+++.+|+|..|....+...-.+....+....+.+. ...+...
T Consensus        35 ~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (399)
T PRK05122         35 LAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLL  114 (399)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHH
Confidence            345666776 57999999999999999999999999999999999988877666422111111112222211 1223445


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      ++.+-++..+|.-.++.+...+..+.+|+++||+.+|......++. -++..+.+.+.+
T Consensus       115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        115 LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            5555556666666778888889999999999999999876666655 345555566654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.77  E-value=0.0017  Score=67.37  Aligned_cols=131  Identities=14%  Similarity=0.039  Sum_probs=88.3

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      .....+..|+.+.|+|+.++|+..+...++..++..+.+++.+|+|..|.-..+...   .........+.+ +.+   .
T Consensus        24 ~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~---~~~~~~~~~~~~-~~~---~   96 (381)
T PRK03633         24 VLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI---FAAGCAGLGLMV-GFW---S   96 (381)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc-cHH---H
Confidence            355678889889999999999999999999999999999999999988877665542   222222222333 222   2


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      ++.+-++..+|.=.+-......+.+..|+++||+..|...+..++. .++..+.+.+.+
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            2222223333322334445566677788899999999887777666 555555555543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.76  E-value=0.00059  Score=72.46  Aligned_cols=126  Identities=10%  Similarity=-0.063  Sum_probs=79.2

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 011118          317 TATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVA  396 (493)
Q Consensus       317 ~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~  396 (493)
                      ..|+++.|+++.++|...++..++...+....+++.+|+|..|.-.++.....++....   .+.+....+...+.....
T Consensus        50 ~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~  126 (438)
T TIGR00712        50 MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLM---GFVPWATSSIAIMFVLLF  126 (438)
T ss_pred             hHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHH---hccccccchHHHHHHHHH
Confidence            44667789999999999999999999999999999999998776555443222211111   111100011122222222


Q ss_pred             hhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHH
Q 011118          397 TSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGI  445 (493)
Q Consensus       397 ~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~i  445 (493)
                      +.+++.-.........+.|..|+++||+.+|+.++..++. -++..+.+.
T Consensus       127 l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       127 LNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             HHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence            2333322223445566778899999999999998887766 334444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.75  E-value=0.00068  Score=69.65  Aligned_cols=128  Identities=9%  Similarity=-0.007  Sum_probs=89.6

Q ss_pred             hhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 011118          313 GTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLM  392 (493)
Q Consensus       313 ~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~  392 (493)
                      ...+..|.++.|+++.++|...++..++..++....+++.+|+|..|...++.....++..   ...+.+ ..+   .+.
T Consensus        11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~---~~~~~~-~~~---~~~   83 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAV---ACALAQ-TID---QLI   83 (377)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHH---HHHHHc-cHH---HHH
Confidence            3456778888999999999999999999999999999999999987776666543322222   222222 111   122


Q ss_pred             HHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          393 VGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       393 ~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      .+.++..++.-.++.....++++..|+++||+..|.......+. -++..+.+.+.
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333445555678888899999999999999999988777666 33333444443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.73  E-value=0.002  Score=69.53  Aligned_cols=126  Identities=16%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             HHHHHHhhh-hhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH
Q 011118          303 ALLFFTVLS-FGTLMTATLE-WEGIPAYIIGIARGISATIGIAAT-ILYPILQSRISTLRTGLWSIWSQWFCLLICVASI  379 (493)
Q Consensus       303 alLy~tVL~-f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT-~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~  379 (493)
                      -++|....+ .....+.|++ .-|.++..++.+.+.....+..+- +..|.+++.+|..+....+++.+.+.+..  ..+
T Consensus       250 ~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~--~af  327 (463)
T KOG2816|consen  250 FLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLL--FAF  327 (463)
T ss_pred             HHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHH--HHH
Confidence            355555543 3323477888 489999999988888777777654 45568899999888777777765544332  112


Q ss_pred             hhcchH-HHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          380 WIHNSL-VAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       380 ~~~~~~-~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      ...... +.... +.++  ++    .--.+.-.+.=..++++++|.+.++..-++.+.+
T Consensus       328 ~~~~w~~~~~~v-~~~~--~~----~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~  379 (463)
T KOG2816|consen  328 ATETWMMFAAGV-VVAL--AG----IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG  379 (463)
T ss_pred             hccchhhhHHHH-HHHh--hc----chhHHHHhHHHhhcccccccchhhHHHHHHHHhh
Confidence            111110 11111 1111  11    1134555566677999999999998887777763

>PRK12382 putative transporter; Provisional

Probab=97.72  E-value=0.0024  Score=66.28  Aligned_cols=136  Identities=13%  Similarity=-0.012  Sum_probs=89.7

Q ss_pred             hhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc-hHHHHH
Q 011118          312 FGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN-SLVAAY  389 (493)
Q Consensus       312 f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~-~~~s~~  389 (493)
                      ....+..|+. +.|+++.++|+..++..++..++....+++..|+|..|....+.....++....+.....+. ...+..
T Consensus        34 ~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
T PRK12382         34 PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFA  113 (392)
T ss_pred             HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence            3445666776 58999999999999999999999999999999999888776665422111111111111111 122334


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      .++.+-.+..+|-=.+..+...++++.+|+++||+..|......++. -++..+.+.+.
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        114 LLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555544556677788899999999999999876655554 34444445444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.00025  Score=75.30  Aligned_cols=75  Identities=12%  Similarity=0.099  Sum_probs=59.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHH
Q 011118           25 AHFLARWGARMWEFSVGLYMISV---WPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIV   99 (493)
Q Consensus        25 s~~lS~~Gdr~~~Fa~~L~lv~l---~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~   99 (493)
                      --.+...=++|-++++|=.+-++   ++-+.-.-++.+.+..+..++++|..|.+.||++|++++.+.+.+=.+++.+
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~  114 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA  114 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence            33444455678888888776665   5557778899999999999999999999999999999998887665555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.70  E-value=0.0018  Score=68.44  Aligned_cols=129  Identities=14%  Similarity=0.024  Sum_probs=85.5

Q ss_pred             hhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 011118          311 SFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAY  389 (493)
Q Consensus       311 ~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~  389 (493)
                      ..+.... ++. +.|+++..+|...++..++..++.+..+++.+|+|..|....+...   .....+...+.++ ...  
T Consensus        26 ~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~---~~~~~~~~~~~~~-~~~--   98 (412)
T TIGR02332        26 NIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL---WGIASTATMFATG-PES--   98 (412)
T ss_pred             hHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH---HHHHHHHHHHhcC-HHH--
Confidence            3433444 444 7999999999999999999999999999999999998877655542   1222222223322 111  


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                       +..+-.+..+|.-.+-.+...+++|..|+++||+..|...+..... -++..+.+.+.
T Consensus        99 -l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        99 -LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             -HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1122222233333344677788999999999999999988777665 44445555554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.69  E-value=0.0026  Score=66.04  Aligned_cols=121  Identities=10%  Similarity=0.070  Sum_probs=81.7

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011118          316 MTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGV  395 (493)
Q Consensus       316 ~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi  395 (493)
                      +..+.++.|.++..+|+..+...++...+....+++.+|+|-.|....+..   .+........+.+ +..   .+..+.
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~---~~~i~~~~~~~~~-~~~---~~~~~~   98 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAA---LFIIASLLCSLAE-TSS---LFLAGR   98 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHH---HHHHHHHHHHHhC-cHH---HHHHHH
Confidence            344455789999999999999999999999999999999997766655443   1222222222222 211   222233


Q ss_pred             HhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHH
Q 011118          396 ATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTM  443 (493)
Q Consensus       396 ~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~  443 (493)
                      .+..++.-.++.....++.|..|+++|++..|..+...++........
T Consensus        99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i  146 (392)
T PRK10473         99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL  146 (392)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445567778888999999999999999888877664443333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.01  Score=64.93  Aligned_cols=388  Identities=14%  Similarity=0.125  Sum_probs=200.5

Q ss_pred             HHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q 011118           45 ISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLL  124 (493)
Q Consensus        45 v~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l  124 (493)
                      .+-++.+--.++..+.+......+.+|.++.+.||++.|+++++..++..+...+++.+           ..-|..+ +.
T Consensus        73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~-----------~~i~~l~-lt  140 (509)
T KOG2504|consen   73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA-----------TSLWQLY-LT  140 (509)
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH-----------hhHHHHH-HH
Confidence            34566666668888888888889999999999999999999988875555553322221           1112111 11


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHH
Q 011118          125 VILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIW  204 (493)
Q Consensus       125 ~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~  204 (493)
                      +  ..+.|+-..+..   ..+     ++.+..-=+ .+...+|..--.-+-+.-++=|.+.-.++...|.+.+.......
T Consensus       141 ~--gvi~G~G~~~~~---~pa-----iviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~  209 (509)
T KOG2504|consen  141 F--GVIGGLGLGLIY---LPA-----VVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGI  209 (509)
T ss_pred             H--HHHhhccchhhh---cch-----hhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            1  111122111111   112     222221111 34567777776666676777777777788888888776544333


Q ss_pred             HHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcc----ccccccccccchhHHHHHHHHHHHHhhhcc
Q 011118          205 TTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPR----ERESLLSHDENNAELAEKRWRWKIIDWISN  280 (493)
Q Consensus       205 n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  280 (493)
                      - ++.    ......|+..+....++++++.++...+.+......+    +.++.... ...++...   .++..++...
T Consensus       210 ~-l~~----~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~  280 (509)
T KOG2504|consen  210 S-LNV----LVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKK-LSLSNLAT---LKRGPDKWRN  280 (509)
T ss_pred             H-HHH----HHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCc-ccccchhh---hhhCCccccc
Confidence            3 223    2333333332111111101100000000000000000    00000000 00000000   0000000000


Q ss_pred             ccccccc----eeeecccchHHHH-HHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011118          281 APCVGAW----QVYLKQEVVLPGV-SLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRI  355 (493)
Q Consensus       281 ~~~~~g~----~~y~~q~v~la~~-alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri  355 (493)
                      .......    ...+++|.|+--. +..+.++-...+......|.+++|+++...+...++.++..+.|=++.+++..+-
T Consensus       281 ~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~  360 (509)
T KOG2504|consen  281 SPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP  360 (509)
T ss_pred             cchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc
Confidence            0001111    2345666554322 2223333334466678888899999999999999999999999999999999988


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHH-Hhhcc--hHH--HHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHH
Q 011118          356 STLRTGLWSIWSQWFCLLICVAS-IWIHN--SLV--AAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQN  430 (493)
Q Consensus       356 Gl~r~g~~~~~~q~~~L~~~v~~-~~~~~--~~~--s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~  430 (493)
                      ...+.-..     .+++..+.+. .+.|.  +.+  ..+-.+.|..   .|  .|-.-...+.=+.++.++.....|.+.
T Consensus       361 ~~~~~~~~-----~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~---~g--~~~~l~~~i~~~~~g~~~l~~a~Gl~l  430 (509)
T KOG2504|consen  361 GIRALVLF-----LLTLLIAGLARLFLPFATTYVGLIVFSILFGFC---VG--SFSSLTPVILVDLVGLEKLSNAYGLLL  430 (509)
T ss_pred             ccchHHHH-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHcChhhcchHHHHHH
Confidence            84333322     2344333332 33321  221  1111222222   11  112222256667788888999999988


Q ss_pred             HHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011118          431 SLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFH  474 (493)
Q Consensus       431 sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~  474 (493)
                      -.+.++ =.+.-+.+.+-...+++......+-.....++.++...
T Consensus       431 ~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  431 LFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            888888 56666777777888878777777766666666555443

>TIGR00897 2A0118 polyol permease family

Probab=97.66  E-value=0.003  Score=66.24  Aligned_cols=132  Identities=11%  Similarity=0.009  Sum_probs=86.7

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011118          315 LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVG  394 (493)
Q Consensus       315 l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~g  394 (493)
                      .+..|+++.|+++.++|...+...++..++....+++.+|+|..|...++.....++...........++.+..   ...
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~  111 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI---LLF  111 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH---HHH
Confidence            45567778999999999999999999999999999999999999887776653222211111101111122211   122


Q ss_pred             HHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH--HHHHHHHHhccC
Q 011118          395 VATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD--LMAYTMGIIISN  449 (493)
Q Consensus       395 i~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~--l~~~~~~ii~~~  449 (493)
                      -.+..+|.-.+-......+.+.+|+++||+.+|...+.+++..  ++..+.+.+.+.
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~  168 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA  168 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            2223344433444556677788999999999999888877652  344555555543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.65  E-value=0.0036  Score=64.33  Aligned_cols=129  Identities=9%  Similarity=-0.031  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      ++.....+.++.|+++.++|...++..++..++....+++.+|+|..|.-.++...   ....+....+.+ +   ...+
T Consensus        31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~---~~~~~~~~~~~~-~---~~~l  103 (405)
T TIGR00891        31 VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL---FSAGTLACGFAP-G---YITM  103 (405)
T ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHhc-c---HHHH
Confidence            44455656567999999999999999999999999999999999988876655431   112222222222 2   2223


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      +.+-++..+|.-.++.....++-|..|+++||+.+|...+...+. -++..+.+.+.
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555677888888889999999999999888776665 44444444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.65  E-value=0.0027  Score=65.96  Aligned_cols=130  Identities=13%  Similarity=-0.002  Sum_probs=85.9

Q ss_pred             hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 011118          310 LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAY  389 (493)
Q Consensus       310 L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~  389 (493)
                      ....++++.+..+.|+++..+|...++..++.+++....+++.+|+|..|.-..+...   +....+...+.+ +.+.  
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~---~~~~~~l~~~~~-~~~~--   93 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL---CVIGNAMFTLSS-SYLM--   93 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH---HHHHHHHHHHhC-cHHH--
Confidence            4466677777778999999999999999999999999999999999988777665542   222222223333 2222  


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHh
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGII  446 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii  446 (493)
                       ++.+-++..++.-.+-.....+.++..|+++|++..|...+.+++.. ++..+.+.+
T Consensus        94 -l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         94 -LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             -HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence             22222233333223334556678888999999999988776666553 333444444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.61  E-value=0.0041  Score=65.89  Aligned_cols=129  Identities=12%  Similarity=0.027  Sum_probs=95.5

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011118          315 LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVG  394 (493)
Q Consensus       315 l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~g  394 (493)
                      +...+..+.|+++.+.|...+...++.++++...+++.+|+|..|+..++...   +...+......+ ...+...++.+
T Consensus        25 l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l---~~~g~~l~~~~~-~~~~~~~~l~~  100 (410)
T TIGR00885        25 MVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL---YALGAFLFWPAA-EIMNYTLFLVG  100 (410)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH---HHHHHHHHHHHH-hhccHHHHHHH
Confidence            44444446899999999999999999999999999999999988888777652   222222211111 11234455666


Q ss_pred             HHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          395 VATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       395 i~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      ..+.++|.-.++...+.++++..|+++|++..+..++.+++- -++..+.+.+.
T Consensus       101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888888999999999999999999999988887777776 55555555443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.14  Score=54.26  Aligned_cols=380  Identities=14%  Similarity=0.113  Sum_probs=202.6

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHH--HHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYM--ISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLV   91 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~l--v~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~   91 (493)
                      .++..-+.|+.|-+.-..+--+|..--|+-.  ..-+.=|--+.+.....-.+...++=.+.|-|.||++-|++...+.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            3444567788888888888888888777632  22344467777888888888888888999999999976666555542


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHH
Q 011118           92 TQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIR  171 (493)
Q Consensus        92 ~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mr  171 (493)
                      +-.+.    |   +.+.. .. .   ++.+..+.++.+++|..+.-|+++...+  -.|-|    +++.+.=...|..=+
T Consensus        88 l~~IP----~---~~~~~-a~-~---~~~~~~ll~~gll~G~~GasFav~m~~~--s~~fP----~~~qG~AlGI~g~GN  149 (417)
T COG2223          88 LLLIP----C---LGLAF-AV-T---YPSTWQLLVIGLLLGLAGASFAVGMPNA--SFFFP----KEKQGLALGIAGAGN  149 (417)
T ss_pred             HHHHH----H---HHHHH-Hc-c---CCchHHHHHHHHHHhcccceehcccccc--cccCC----hhhhhHHHHHhcccc
Confidence            21111    1   11111 01 1   1111344444556777776666563322  23443    222122223344112


Q ss_pred             hHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccc
Q 011118          172 RIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRE  251 (493)
Q Consensus       172 riDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
                      -=-.+.++++|.++...-.. ..+.++.+-+..-++..+.-...    -+..|+.+.+         +++..+       
T Consensus       150 ~G~av~q~~~P~v~~~~g~~-~w~~~~~i~~~~l~v~~v~~~~~----~~d~p~~r~~---------~~~~~~-------  208 (417)
T COG2223         150 LGVAVAQLVAPLVAVAFGFL-AWRNVAGIYVVALAIAAVLAWLG----MNDVPEHRAS---------VKPQLP-------  208 (417)
T ss_pred             ccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHH----hCCChhhhcc---------ccccch-------
Confidence            22467788888887665320 13333333223333333222222    2233432100         000000       


Q ss_pred             cccccccccchhHHHHHHHHHHHHhhhccccccccceeeeccc-chHHHHHHHHHHHH----hhhhhhHHHHHHHH-cCC
Q 011118          252 RESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQE-VVLPGVSLALLFFT----VLSFGTLMTATLEW-EGI  325 (493)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~-v~la~~alalLy~t----VL~f~~l~~~yl~~-~gl  325 (493)
                                   .+.                    +..++++ +++    ++++|+-    ..+|+....-|+++ =|+
T Consensus       209 -------------~~~--------------------~~v~~~~~~W~----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~  251 (417)
T COG2223         209 -------------AQL--------------------KAVFSNKDTWL----LSLLYFATFGGFVGFSAYLPMYLVTQFGL  251 (417)
T ss_pred             -------------hHH--------------------HHHhcCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                         000                    1111222 333    4666643    35688899999995 699


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHhhh
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI------HNSLVAAYMLMVGVATSR  399 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~------~~~~~s~~~l~~gi~~SR  399 (493)
                      ++..-|.+-..++..|-+.=-+.+++..|+|-.|.-++..+.  .++...+++...      ++.......++.-.+++.
T Consensus       252 ~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G  329 (417)
T COG2223         252 SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG--MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG  329 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH--HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence            999999888888888888888889999999999988876652  122222333322      112223333343344444


Q ss_pred             chhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 011118          400 LGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII-SNPQDFWKLILISVIVVTLAAILYTFHLY  476 (493)
Q Consensus       400 ~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~-~~p~~F~~l~~~S~~~V~~~~~l~~~~~~  476 (493)
                      +|    |=++-+++=.. -+++-|.|+|...+.-.+- -.+....+... ...+.....++.....+.+..+.+..|.|
T Consensus       330 ~G----nGsvfk~Ip~i-f~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         330 LG----NGSVFKMIPVI-FPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             cC----cchheeechHH-HHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43    22222222221 1236788888877776554 22222333333 33346666676766666655555656644

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.036  Score=60.07  Aligned_cols=359  Identities=13%  Similarity=0.054  Sum_probs=206.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Q 011118           52 LLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNIS  131 (493)
Q Consensus        52 ll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  131 (493)
                      .-.-+..--+.....++---++|.++||++-|+++..+.+.-.++         .++.|..+....+.    ++++=.+-
T Consensus        72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~---------t~l~P~aa~~~~~~----~~~~R~lq  138 (466)
T KOG2532|consen   72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALL---------TLLTPLAASIGFYL----LLVLRFLQ  138 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHH---------HHHHHHHHHhcchh----hHHHHHHh
Confidence            344455556677778888888999999999999887776333222         22333111222221    12222344


Q ss_pred             HHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Q 011118          132 GAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISF-VSLQASAMTLAIWTTVTVW  210 (493)
Q Consensus       132 g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~-~s~~~a~~~i~~~n~~S~~  210 (493)
                      |..+...-++ .-.+...|.|    .   .+..+.=+.+-.--+...+.+=.++|.+.+. .|.+....+.++.-.+-+ 
T Consensus       139 Gl~~g~~~pa-~~~i~~~W~P----~---~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~-  209 (466)
T KOG2532|consen  139 GLGQGVLFPA-IGSILAKWAP----P---NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF-  209 (466)
T ss_pred             HHHHhHHHhh-hhceeeeECC----H---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH-
Confidence            5444444444 4556778875    2   2344455555555577777777777888776 676555443333333322 


Q ss_pred             HHHHHHHHHHhhcCcchhh--hhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccce
Q 011118          211 VEYWLFMSVYKGIPALAES--SQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQ  288 (493)
Q Consensus       211 ve~~~l~~Vy~~~p~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  288 (493)
                        ..+ ..+|..-|+-+..  +++.+.                                  ..+...++-.++...-.|+
T Consensus       210 --~~w-~~~~~d~P~~h~~is~~El~~----------------------------------I~~~k~~~~~~~~~~vP~~  252 (466)
T KOG2532|consen  210 --ILW-FLFYSDSPSKHPNISEKELKY----------------------------------IEKGKSEAHVKKKPPVPYK  252 (466)
T ss_pred             --HHH-HHHhcCCcccCCCCCHHHHHH----------------------------------HHhcccccccCCCCCCCHH
Confidence              222 3345555543210  000000                                  0000000000000134688


Q ss_pred             eeecccchHHHHHHHHHHHH-hhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh---chhhhhHH
Q 011118          289 VYLKQEVVLPGVSLALLFFT-VLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRI---STLRTGLW  363 (493)
Q Consensus       289 ~y~~q~v~la~~alalLy~t-VL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri---Gl~r~g~~  363 (493)
                      ..+++|.+++.....+-++. ..-+-.-+++|+++ +|++-..-|.+-++=-+.-..-.++++.+..++   ++-.+...
T Consensus       253 ~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~r  332 (466)
T KOG2532|consen  253 AILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVR  332 (466)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHH
Confidence            88999999998888877643 34466778899997 999988888888776666666666666655544   33222211


Q ss_pred             HHHHHHH-HHHHHHHHH---hhc--chHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-
Q 011118          364 SIWSQWF-CLLICVASI---WIH--NSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-  436 (493)
Q Consensus       364 ~~~~q~~-~L~~~v~~~---~~~--~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-  436 (493)
                      -+ ++.+ +..+++...   +.+  ....++..+..++.++.+-.-+|..+.+..     -+++-|.+.|+.+....+. 
T Consensus       333 ki-fn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-----apq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  333 KI-FNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-----APQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             HH-HHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-----cchHHHHHHHHHHHHHHHHH
Confidence            11 1222 233333322   222  223566666666777766666666655432     5667899999999999998 


Q ss_pred             HHHHHHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHHH
Q 011118          437 DLMAYTMGIIIS--NPQDFWKLILISVIVVTLAAILYTFHL  475 (493)
Q Consensus       437 ~l~~~~~~ii~~--~p~~F~~l~~~S~~~V~~~~~l~~~~~  475 (493)
                      -+..++.+.+.+  ++++-.+.-++..+....+...|..|.
T Consensus       407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            466666677775  245777788888888888887877774

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.56  E-value=0.0029  Score=67.28  Aligned_cols=129  Identities=13%  Similarity=-0.032  Sum_probs=92.5

Q ss_pred             hHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 011118          314 TLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMV  393 (493)
Q Consensus       314 ~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~  393 (493)
                      .....+..+.|.++..+|...+...++..++..+++++.+|+|..|...++....   ....+.....+    +...++.
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~---~~~~~~~~~~~----~~~~l~~   95 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF---TLGSLLCGVAP----NLELMII   95 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH---HHHHHHHhCcC----CHHHHHH
Confidence            3455555679999999999999999999999999999999999888776655422   22222222222    2233444


Q ss_pred             HHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          394 GVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       394 gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      +.++..+|.-..+.....++.|..|+++||+..|...+...+. -++..+.+.+...
T Consensus        96 ~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  152 (485)
T TIGR00711        96 FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN  152 (485)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence            5555556666678888999999999999999999988877776 4555555665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10504 putative transporter; Provisional

Probab=97.55  E-value=0.0045  Score=65.98  Aligned_cols=132  Identities=10%  Similarity=-0.066  Sum_probs=89.3

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      .+...+..|.++.|.++...|...+...++...+..+.+++.+|+|..|...++...-.++.   +...+.+ +...   
T Consensus        28 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~---~~~~~~~-~~~~---  100 (471)
T PRK10504         28 IVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS---LFCALSG-TLNE---  100 (471)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHhC-CHHH---
Confidence            45567888888999999999999999888888999999999999998887665543221111   1112222 2111   


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      +..+.++..+|.-.+-.....+.++..|+++|++..|+.+...++. -++..+.+.+...
T Consensus       101 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~  160 (471)
T PRK10504        101 LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY  160 (471)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            2222333334443344556777888999999999999988777666 4555666666543

>PRK03699 putative transporter; Provisional

Probab=97.54  E-value=0.0075  Score=62.96  Aligned_cols=129  Identities=12%  Similarity=0.068  Sum_probs=83.8

Q ss_pred             hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchH-HHH
Q 011118          310 LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSL-VAA  388 (493)
Q Consensus       310 L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~-~s~  388 (493)
                      ..++.++..+..+.|+++.++|...+...++..++.++.+++.+|+|..|...++...   +...+....+.++.. ..+
T Consensus        24 ~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~---~~i~~~l~~~~~~~~~~~~  100 (394)
T PRK03699         24 IVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL---MILAVAGLMFSHSLALFSI  100 (394)
T ss_pred             HHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHcchHHHHHH
Confidence            4577778877778999999999999999999999999999999999988877665542   222222222232111 111


Q ss_pred             HHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118          389 YMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGII  446 (493)
Q Consensus       389 ~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii  446 (493)
                      ..++.|+.     .-........++.+..|+++||+..+...+...+. -+...+.+.+
T Consensus       101 ~~~l~G~~-----~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699        101 AMFVLGVV-----SGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             HHHHHHHh-----hHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22223322     22223455677788889999999988776655444 3334444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.52  E-value=0.0056  Score=62.38  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=85.4

Q ss_pred             HHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchH
Q 011118          307 FTVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSL  385 (493)
Q Consensus       307 ~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~  385 (493)
                      ++...+....+.|+. +.|+++..+|.+.++..++...+....+++.+|+|..|.-.++...   +....+...+.+.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~---~~i~~~~~~~~~~~~   91 (366)
T TIGR00886        15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL---LAIPCLWAGLAVQSY   91 (366)
T ss_pred             HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH---HHHHHHHHHHHhhhH
Confidence            334456677775565 6999999999999999999999999999999999988877666542   222222222222011


Q ss_pred             HHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118          386 VAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGII  446 (493)
Q Consensus       386 ~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii  446 (493)
                      +   .++.+-++..+|--.+ .....++-+..|+++||+..+...+.++.. -++..+.+.+
T Consensus        92 ~---~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        92 S---VLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             H---HHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            1   1112222222221123 345667888899999999999988766655 4444444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.48  E-value=0.0084  Score=64.23  Aligned_cols=127  Identities=13%  Similarity=-0.001  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011118          315 LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVG  394 (493)
Q Consensus       315 l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~g  394 (493)
                      ....+..+.|+++...|.+.+...++...+.+..+++.+|+|..|...++..   .+...++...+.+ +   ...+..+
T Consensus        42 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~---~~~~~~~~~~~~~-~---~~~l~~~  114 (496)
T PRK03893         42 VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV---LFSVGTLACGFAP-G---YWTLFIA  114 (496)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHh-H---HHHHHHH
Confidence            3344444689999999999999999999999999999999998887665553   2222222222222 1   2223333


Q ss_pred             HHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          395 VATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       395 i~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      .++..++.-..+.+...+++|..|+++||+.+|...+.+++. -++..+.+.+.+
T Consensus       115 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893        115 RLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444445555668888899999999999999999998887777 444445555543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.46  E-value=0.0082  Score=62.82  Aligned_cols=140  Identities=16%  Similarity=0.016  Sum_probs=86.7

Q ss_pred             HHHHHHHh---hh-hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhhh-hHHHHHHHHHH
Q 011118          302 LALLFFTV---LS-FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRI-----STLRT-GLWSIWSQWFC  371 (493)
Q Consensus       302 lalLy~tV---L~-f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri-----Gl~r~-g~~~~~~q~~~  371 (493)
                      +..||+.-   .+ +...+..|++++|+|..++|.+..++..  ....++.+++..|+     |-.|. -.++   +..+
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~---~~~~   78 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT---QVGL   78 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH---HHHH
Confidence            45667531   23 4457888999999999999999888887  58889999999999     54432 2222   2222


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhc
Q 011118          372 LLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIII  447 (493)
Q Consensus       372 L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~  447 (493)
                      ....+...+.+ +..+...++...++..++--..|+....+.-|.+|+++||+.++....-+++.. ++..+.+.+.
T Consensus        79 ~l~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902         79 AASIAAMAFCP-PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            21111212222 111222122221112244556899999999999999999999999987666553 3333333443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.45  E-value=0.0092  Score=62.60  Aligned_cols=128  Identities=17%  Similarity=0.075  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 011118          313 GTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLM  392 (493)
Q Consensus       313 ~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~  392 (493)
                      .+++..+.++.|.++.++|...++..++..++....+++.+|+|..|...++.....   ...+...+.+ +.+   .+.
T Consensus        40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~---~~~~~~~~~~-~~~---~l~  112 (394)
T PRK10213         40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT---LSCLLVSFAN-SFS---LLL  112 (394)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH---HHHHHHHHHC-hHH---HHH
Confidence            345667777899999999999999999999999999999999999888777765322   2222222222 222   222


Q ss_pred             HHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          393 VGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       393 ~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      ..-++..++.-.+-.....+..+.+|+++||+.++...+..++. -++..+.+.+.
T Consensus       113 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        113 IGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222233333345667778889999999999999988877766 34455555554

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.45  E-value=0.079  Score=57.47  Aligned_cols=133  Identities=13%  Similarity=-0.025  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhCCCchHH-HHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011118           36 WEFSVGLYMISVWPDSLLF-AAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLK  114 (493)
Q Consensus        36 ~~Fa~~L~lv~l~~~sll~-~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~  114 (493)
                      ..|+.|-+ ..-++=|.-. .+...-+-+.+..++..++|.+.||.+-|+++....+.-.+.    +++  . ..     
T Consensus        45 ~s~a~p~L-~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~----t~L--~-~f-----  111 (511)
T TIGR00806        45 ESFITPYL-LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV----WLL--L-LL-----  111 (511)
T ss_pred             HHHHHHHH-HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH----HHH--H-HH-----
Confidence            34566653 3344445555 666667778889999999999999999999887665322221    111  1 11     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhh
Q 011118          115 STNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSL  194 (493)
Q Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~  194 (493)
                      ..+   +..+.+.=++.|..+...- +.... --.|+|    +   ++..++++..+.--.+..++||.+++.+. ..|.
T Consensus       112 a~S---l~~L~i~R~llGvaEA~~~-A~~sy-I~~WfP----~---kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gW  178 (511)
T TIGR00806       112 GTS---VWHMQLMEVFYSVTMAARI-AYSSY-IFSLVP----P---SRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGW  178 (511)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHH-HHHHH-HHHHCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence            011   2222222334566665554 43433 345763    2   67899999999999999999999999954 4553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.44  E-value=0.0082  Score=68.57  Aligned_cols=119  Identities=10%  Similarity=-0.009  Sum_probs=84.2

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      .+.+++.+..+.|+++...|.+.++..++.++|.++.+++..|+|-.+..+++....   .+.+++..+.+    +...+
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~---~i~~ll~afa~----s~~~l  258 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN---GFFAFFSSFVQ----GYGFF  258 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH---HHHHHHHHHHh----hHHHH
Confidence            333444444578999999999999999999999999999999999888777665422   22222222332    12233


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      +.+-++..+|.-+.-.....++-|..|+++||+..+...+...+..
T Consensus       259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~  304 (742)
T TIGR01299       259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG  304 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555568888999999999999999998877665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.43  E-value=0.012  Score=61.70  Aligned_cols=111  Identities=11%  Similarity=-0.045  Sum_probs=78.1

Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhc
Q 011118          321 EWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRL  400 (493)
Q Consensus       321 ~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~  400 (493)
                      .+.|+++.+.|...++..++.+++....+++.+|+|..+...++.....+   .+....+.+    +...+..+-.+..+
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~---~~~~~~~~~----~~~~l~~~r~l~G~  118 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV---GTGLSGLAS----GVIMLTLSRFIVGM  118 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH---HHHHHHHHh----HHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999988777766652222   111222222    12223333334444


Q ss_pred             hhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH
Q 011118          401 GLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL  438 (493)
Q Consensus       401 GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l  438 (493)
                      |.-.+..+...++.|..|+++||+.+|...+-..+-.+
T Consensus       119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  156 (426)
T PRK12307        119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI  156 (426)
T ss_pred             HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH
Confidence            44456777888999999999999999987765555433

>PRK03545 putative arabinose transporter; Provisional

Probab=97.43  E-value=0.0087  Score=62.23  Aligned_cols=126  Identities=10%  Similarity=-0.008  Sum_probs=84.1

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011118          315 LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVG  394 (493)
Q Consensus       315 l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~g  394 (493)
                      +...+.++.|+++.++|...+...++..++....+++.+|+|..|....+..   .+...++...+.+ +.+..   ..+
T Consensus        31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~---~~~~~~~~~~~~~-~~~~l---~~~  103 (390)
T PRK03545         31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV---LFIASHVLSALAW-NFTVL---LIS  103 (390)
T ss_pred             chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH---HHHHHHHHHHHhc-cHHHH---HHH
Confidence            4455566799999999999999998888899999999999998887766554   2222223333333 22222   222


Q ss_pred             HHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhc
Q 011118          395 VATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIII  447 (493)
Q Consensus       395 i~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~  447 (493)
                      -.+..++--.+-.....++.+..|+++||++.|...+.+++.. ++..+.+.+.
T Consensus       104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            2222233333445667788889999999999999888777763 3344444444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.021  Score=62.31  Aligned_cols=305  Identities=12%  Similarity=0.061  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Q 011118           56 AIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVG  135 (493)
Q Consensus        56 sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~  135 (493)
                      +....+-.+..+++-.+.|.+.||.|=.+.+-.+.+.=.+...+.|.            ..+.+.|.   ++=++.|.++
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------------~~s~~~~i---alr~llGl~e  148 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------------VHSFPGLI---ALRFLLGLFE  148 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------------HhhhHHHH---HHHHHHHHHh
Confidence            44455667889999999999999999555554444222222111111            11222222   2234568888


Q ss_pred             HhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHH------hhhhHHHHHHHHHHHHHHH
Q 011118          136 VISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIIS------FVSLQASAMTLAIWTTVTV  209 (493)
Q Consensus       136 ~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~------~~s~~~a~~~i~~~n~~S~  209 (493)
                      ...-++ .+++-.-|-    ++   +++...=+..-.--+++.++|.+++..+..      ..|++...++.+   .+++
T Consensus       149 s~~wP~-~~~~lg~wy----~~---~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G---~i~~  217 (495)
T KOG2533|consen  149 SGGWPG-VVAILGNWY----GK---SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG---VITL  217 (495)
T ss_pred             cccchH-HHHHHHhhc----Ch---hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH---HHHH
Confidence            877777 555566676    33   345544445544456667777766666532      234444433222   3344


Q ss_pred             HHHHHHHHHHHhhcCcchhhhhhhhccCC---CcccccccCCccccccccccccchhHHHHHHHHHHHHhhhcccccccc
Q 011118          210 WVEYWLFMSVYKGIPALAESSQRRIRRSM---PIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGA  286 (493)
Q Consensus       210 ~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  286 (493)
                      +...+.    +--.|.-+++.+-.+++++   +++.++.++            ++..++    +            -..+
T Consensus       218 ~~gi~~----f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~------------~~~~~~----~------------~~~~  265 (495)
T KOG2533|consen  218 VLGIVV----FFFLPDNPSKAWFLTDEEKELVVERLRESPS------------GGIENK----F------------KWKG  265 (495)
T ss_pred             HHHheE----EEEecCChhhccccchHHHHHHHHHHHhccC------------CCcccc----c------------CHHH
Confidence            333222    1123432211000000000   000000000            000000    0            0234


Q ss_pred             ceeeecccchHHH-HHHHHHHHHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhhhH
Q 011118          287 WQVYLKQEVVLPG-VSLALLFFTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRIS--TLRTGL  362 (493)
Q Consensus       287 ~~~y~~q~v~la~-~alalLy~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riG--l~r~g~  362 (493)
                      ++.-+++|...+. +...+....--++.+-.+.|+++ .|+++...+.+-..-.++|++|+++++.+..|+.  ..+-..
T Consensus       266 ~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~  345 (495)
T KOG2533|consen  266 FKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLL  345 (495)
T ss_pred             HHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4555666644433 22223222223588899999997 7799999999999999999999999999999986  222233


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcc
Q 011118          363 WSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDR  422 (493)
Q Consensus       363 ~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~r  422 (493)
                      +...........++...+...+......++.+    ..+++.--.+...-.|.......|
T Consensus       346 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~w~s~~~~g~~k  401 (495)
T KOG2533|consen  346 FIVFLCLYAIIGAISLLAAAVLPGAYGAFLIG----PYGLIATAIIALSWTSANLAGNTK  401 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchHHhHHHHhc----chhhHHHHHHHHhhccccccchHH
Confidence            22221111222223323332122222222222    245555566666667777744433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.41  E-value=0.29  Score=53.26  Aligned_cols=131  Identities=11%  Similarity=-0.008  Sum_probs=73.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhccceeeecc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------ccc
Q 011118           48 WPDSLLFAAIYGAVESASIALFGPIVGHWVDK----LTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSL-------KST  116 (493)
Q Consensus        48 ~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr----~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~-------~~~  116 (493)
                      ..-+...++..-.+..+..++..|.+|.+.||    ++|||..+..-   .+..+++..+ +. ...+..       +..
T Consensus        34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g---~~~~~~~l~l-l~-~~~~~~~~~~~~~~~~  108 (477)
T TIGR01301        34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG---AALVAFAVIL-IG-FAADIGHLFGDNLDKK  108 (477)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH---HHHHHHHHHH-HH-hCchhhhhcccccccc
Confidence            44577888888889999999999999999995    88998876542   1111111111 11 111000       000


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHH
Q 011118          117 NFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFI  188 (493)
Q Consensus       117 ~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l  188 (493)
                      ........+++.+   ++.-++....+.. -|-.+..++++++ ++....|+...+.-.+..++|++++|..
T Consensus       109 ~~~~~i~~~~i~~---~lld~~~n~~~~p-~rALiaDl~p~~~-~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       109 TKPRAIIVFVVGF---WILDVANNMLQGP-CRAFLADLTGGDA-RRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             chhHHHHHHHHHH---HHHHHHHHHHHHH-HHHhcccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0001001111110   1111222221222 2444777777643 3456799999999999999999999975

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.41  E-value=0.0045  Score=65.12  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             eeecccchHHHHHHHHHHHHhh-hhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Q 011118          289 VYLKQEVVLPGVSLALLFFTVL-SFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSI  365 (493)
Q Consensus       289 ~y~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~  365 (493)
                      +++++|.++.....-+++.... .+.+.+..|+++ .|+++.++|+..++..++..++....+++.+|+|..|...++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            3567888877766666665544 467889999996 8999999999999999999999999999999999888776544

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.40  E-value=0.0078  Score=61.43  Aligned_cols=163  Identities=12%  Similarity=0.052  Sum_probs=93.6

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      +.++.++...++...+..+.....|.++.+.++.+....+..........+...+..|.+.||++||+++..+.+.-   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~---  275 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAG---  275 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHH---
Confidence            44566667776665556666666788887777767666666655555666777788999999999999876654321   


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                          ... +.....   ....+..+. +.   .+.+.......+.....+ .|..    +    ++..+.++........
T Consensus       276 ----~~~-~~~~~~---~~~~~~~~~-~~---~~~g~~~g~~~~~~~~~~-~~~~----~----~~~~~~~~~~~~~~~~  334 (375)
T TIGR00899       276 ----VAF-YTGLAA---DNSLWALLM-LQ---LLNAIFIGILAGIGMLYF-QDLM----P----GRAGAATTLYTNTGRV  334 (375)
T ss_pred             ----HHH-HHHHHH---HHHHHHHHH-HH---HHHHHHHHHHHHHHHHHH-HHhC----c----chhhHHHHHHHHHHHH
Confidence                111 111111   111121111 11   111222222222212221 1212    2    2345778888877888


Q ss_pred             HHhhhhHHHHHHHHhhhhHHHHHHHHH
Q 011118          177 CKLLAPAITGFIISFVSLQASAMTLAI  203 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s~~~a~~~i~~  203 (493)
                      ...+||.++|.+.+..|+........+
T Consensus       335 g~~~g~~~~g~~~~~~g~~~~~~~~~~  361 (375)
T TIGR00899       335 GWIIAGSVGGILAERWSYHAVYWFAIV  361 (375)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            999999999999998886655533333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.38  E-value=0.0094  Score=64.48  Aligned_cols=173  Identities=12%  Similarity=0.005  Sum_probs=103.4

Q ss_pred             eccc-chHHHHHHHHHH-HHhhhhhhHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhhhHHH
Q 011118          291 LKQE-VVLPGVSLALLF-FTVLSFGTLMTATLEW---EGIPAYIIGIARGISATIGIAATILYPILQSR-ISTLRTGLWS  364 (493)
Q Consensus       291 ~~q~-v~la~~alalLy-~tVL~f~~l~~~yl~~---~gls~~~iG~~r~~~av~GllgT~~~~~l~~r-iGl~r~g~~~  364 (493)
                      ++|| .+...+...+.. +...+..+.++.|+.+   .|+++...|...+.-++++.++.+..+++..| +|..|+..++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            4566 333333333443 4444566678889885   69999999999999999999999999999988 8999988877


Q ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCC---cchhHHHHHHHHHHhh-HHHH
Q 011118          365 IWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPES---DRCVVGGVQNSLQSTM-DLMA  440 (493)
Q Consensus       365 ~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~---~rG~v~gv~~sl~~~f-~l~~  440 (493)
                      .....   ....+..+.+ ..   ..+..+..+..+|--.+..+...+.=+..|++   +|++..+...+..++- -++.
T Consensus        86 ~~~~~---~g~~~~~~~~-~~---~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        86 GIVLM---LGHFMLAMSI-YP---DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             HHHHH---HHHHHHHhcc-cH---hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence            65221   1111112222 11   12223333334444445666666655555554   4888888777766666 5555


Q ss_pred             HHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Q 011118          441 YTMGIIISNPQDFWKLILISVIVVTLAAILY  471 (493)
Q Consensus       441 ~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~  471 (493)
                      .+.+.+...-+ +.+...++......+.+.|
T Consensus       159 ~l~g~l~~~~g-~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       159 LLAGVIAENYG-YHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHH
Confidence            66666654322 3333333333333343333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.38  E-value=0.0069  Score=71.90  Aligned_cols=154  Identities=13%  Similarity=0.032  Sum_probs=98.4

Q ss_pred             ecccchHHHHHHHHHH-HHhhhhhhHHHHHHH-HcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          291 LKQEVVLPGVSLALLF-FTVLSFGTLMTATLE-WEGIP--AYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       291 ~~q~v~la~~alalLy-~tVL~f~~l~~~yl~-~~gls--~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      ++++.|+..+...++. +.-......+..++. +.+.+  ...+|+..++-.++.++++..++++..|+|-.|...++..
T Consensus         6 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~   85 (1146)
T PRK08633          6 LKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKL   85 (1146)
T ss_pred             hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHH
Confidence            3455555555444433 222233334444554 34443  4557888888888899999999999999998888877765


Q ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH-HHHHHHH
Q 011118          367 SQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL-MAYTMGI  445 (493)
Q Consensus       367 ~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l-~~~~~~i  445 (493)
                      ...++.....+..+.+ +   ...++.+.++..++.-.+..+...++.+.+|+++||+.+|...+..++..+ +..+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~-~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~  161 (1146)
T PRK08633         86 FEVGLTLLIVLAYYLG-W---FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSF  161 (1146)
T ss_pred             HHHHHHHHHHHHHHHc-c---HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4433333222222222 1   333444444455556667888889999999999999999999998887744 4454555


Q ss_pred             hcc
Q 011118          446 IIS  448 (493)
Q Consensus       446 i~~  448 (493)
                      +..
T Consensus       162 l~~  164 (1146)
T PRK08633        162 LFE  164 (1146)
T ss_pred             HHH
Confidence            543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.35  E-value=0.012  Score=59.60  Aligned_cols=119  Identities=11%  Similarity=-0.011  Sum_probs=76.4

Q ss_pred             hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 011118          310 LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAY  389 (493)
Q Consensus       310 L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~  389 (493)
                      ..++.+...+.++.|+++.++|...++..++..++....+++.+|+|..|....+...   +...++...+.+ +.+.  
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~---~~~~~~~~~~~~-~~~~--   93 (377)
T TIGR00890        20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGIL---YGLGFTFYAIAD-SLAA--   93 (377)
T ss_pred             hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHH---HHHHHHHHHHHH-HHHH--
Confidence            3566666666667999999999999999999999999999999999988776655532   222222222222 2111  


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                       +..+-.+..+|.-....+.....++..| ++||+..+...+..++-
T Consensus        94 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  138 (377)
T TIGR00890        94 -LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLG  138 (377)
T ss_pred             -HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchh
Confidence             1122222223322233344556677766 47999999887776554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.34  E-value=0.014  Score=61.14  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=92.6

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      +++..++....+.|+|..++|..-++..++..++....+++.+|+|..|+..++.....   ...+...+.++. .   .
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~---~~~~~~~~a~~~-~---~   99 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA---VGALMRELYPQS-A---L   99 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH---HHHHHHHHCcch-H---H
Confidence            35556666666799999999999999999999999999999999999999888776322   222222333321 1   2


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      ++.+-++..+|.=........++++..| ++||+++|...+..+.- .++..+...+.+.
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~  158 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH  158 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2333444455555667777788888876 78999999988766555 6666666655544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.31  E-value=0.019  Score=61.93  Aligned_cols=125  Identities=11%  Similarity=0.042  Sum_probs=78.7

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchH-HHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSL-VAAY  389 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~-~s~~  389 (493)
                      +....+..+.++.|+++.++|...+...++...+.++.+++.+|+|..+...++..   .+....+...+.+... .-+.
T Consensus        54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~---~~~~~~~~~~~~~s~~~l~~~  130 (476)
T PLN00028         54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLM---LTAPAVFCMSLVSSATGFIAV  130 (476)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH---HHHHHHHHHHHhcCHHHHHHH
Confidence            34444555555799999999999888888999999999999999998776665543   2222222222232111 1112


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHH
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMG  444 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~  444 (493)
                      -++.|+.     ...+ .....++-+..|+++||+++|+.++..++. .++.++..
T Consensus       131 r~l~G~~-----~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        131 RFFIGFS-----LATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHH-----HHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333333     2222 234456778899999999999988766554 44444443

>TIGR00901 2A0125 AmpG-related permease

Probab=97.30  E-value=0.012  Score=60.04  Aligned_cols=131  Identities=10%  Similarity=0.019  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhhhhHHHHHHHHHHHHHHHHHHhhcchHHH
Q 011118          313 GTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRI-----STLRTGLWSIWSQWFCLLICVASIWIHNSLVA  387 (493)
Q Consensus       313 ~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri-----Gl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s  387 (493)
                      +..+..++++.|+|..++|..-.++...+ + .++.+++..|+     |-.|.-+  +..+..+........+.++ ..+
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~-~~~~g~~~Dr~~~~~~Grr~~~l--~~~~~~~~~~~~~l~~~~~-~~~   82 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLVGLPYS-L-KFLWSPLVDTVYLPFFGRRRSWL--VLTQVLLLSLLLILSFLVP-STD   82 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHHHHHHH-H-HHHHHHHHhcccCCCCCccHHHH--HHHHHHHHHHHHHHHcCCc-chh
Confidence            34677788899999999999976643333 3 77888888887     4334322  1222222222112222221 111


Q ss_pred             HH-HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH-HHHHHHHhccC
Q 011118          388 AY-MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL-MAYTMGIIISN  449 (493)
Q Consensus       388 ~~-~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l-~~~~~~ii~~~  449 (493)
                      .. +...+... .++--..|+....++-|.+|+++||+++|.+.+-.++..+ +..+.+.+.+.
T Consensus        83 l~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~  145 (356)
T TIGR00901        83 LPLLAGLAFLI-AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP  145 (356)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            11 11222222 2444567999999999999999999999998876666644 44444444443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.30  E-value=0.017  Score=59.95  Aligned_cols=148  Identities=14%  Similarity=0.032  Sum_probs=88.7

Q ss_pred             ccchHHHHHHHHHHHHh----hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHH
Q 011118          293 QEVVLPGVSLALLFFTV----LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQ  368 (493)
Q Consensus       293 q~v~la~~alalLy~tV----L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q  368 (493)
                      |+.++......+.++..    -.+...+..+.++.|+++.++|...+...++..++....+++.+|+|..|...++....
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            44555555555444321    12333456667789999999999999999999999999999999999877766554321


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH-HHHHHHHhc
Q 011118          369 WFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL-MAYTMGIII  447 (493)
Q Consensus       369 ~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l-~~~~~~ii~  447 (493)
                      .+   ........+ +.+   .++.+-.+..+|.-........+..+..|++++++.++....-.....+ +..+.+.+.
T Consensus        84 ~~---~~~~~~~~~-~~~---~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         84 IL---GTLVALFAH-SLT---VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HH---HHHHHHHHc-cHH---HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   111112222 111   1112222222222233455556667778889999988887666665543 334444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.29  E-value=0.018  Score=60.22  Aligned_cols=130  Identities=16%  Similarity=0.081  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      +...+..+.++.|+++.++|...+...++...+.+..+++.+|+|..|...++...   +...+....+.+ +.+.   +
T Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~---~~~~~~~~~~~~-~~~~---l  104 (406)
T PRK15402         32 IQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF---FILTCLAILLAQ-SIEQ---F  104 (406)
T ss_pred             HhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH---HHHHHHHHHHHc-cHHH---H
Confidence            33445556678999999999999999999999999999999999988876665542   111222222222 2221   2


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      ..+-.+..++.-.+.......++|..|+++|++.++......... -++..+.+.+..
T Consensus       105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  162 (406)
T PRK15402        105 TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH  162 (406)
T ss_pred             HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222223322335566788889999999999988877766554 333344444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.29  E-value=0.0025  Score=54.64  Aligned_cols=107  Identities=14%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhc
Q 011118          336 ISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQD  415 (493)
Q Consensus       336 ~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe  415 (493)
                      ...++++++....+++.+|+|..|.-..+....   ........+.+ +.+   .+.....+..++.-..+.....+.+|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~---~~~~~~~~~~~-~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIF---VLSTAMFALSS-NIT---VLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHH---HHHHHHHHHhc-cHH---HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345677888999999999999777655444321   11111111222 222   12222333334444557788889999


Q ss_pred             cCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          416 LVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       416 ~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      ..|+++|+++++..++.++.. -++..+.+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  113 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF  113 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence            999999999999999988888 6666666666533

>PRK11043 putative transporter; Provisional

Probab=97.26  E-value=0.022  Score=59.31  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=81.4

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011118          316 MTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGV  395 (493)
Q Consensus       316 ~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi  395 (493)
                      +..+.++.|.++.++|...++..++..++.+..+++.+|+|..|...++..   .+...+....+.+ +.+   .+..+.
T Consensus        29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~---~~~~~~~~~~~~~-~~~---~l~~~~  101 (401)
T PRK11043         29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLS---LFALGSLGMLWVE-SAA---QLLVLR  101 (401)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHH---HHHHHHHHHHHhc-CHH---HHHHHH
Confidence            333455789999999999999999999999999999999998877665543   1222222222232 211   122222


Q ss_pred             HhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          396 ATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       396 ~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      .+..+|.-........+..+..|++++++..+...+...+. -++..+.+.+..
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043        102 FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            23333333334556677888899999999888777666555 444555555543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.25  E-value=0.017  Score=59.91  Aligned_cols=127  Identities=14%  Similarity=0.077  Sum_probs=80.7

Q ss_pred             hhhHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHH
Q 011118          312 FGTLMTATLEWEGIPAYI-----IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLV  386 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~-----iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~  386 (493)
                      ....+..|.++.|+++..     .|...++..+++.++..+.+++.+|+|..|...++.....   .......+.+ +.+
T Consensus        33 ~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~~-~~~  108 (408)
T PRK09874         33 VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG---IVMVLMGLAQ-NIW  108 (408)
T ss_pred             hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH---HHHHHHHHHh-hHH
Confidence            445678888888988654     5999999999999999999999999998777665443211   1111111222 221


Q ss_pred             H--HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          387 A--AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       387 s--~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      .  +..++.|+.   .+   +......++.+..|+++||+.+|......+.. -++..+.+.+..
T Consensus       109 ~~~~~~~~~g~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874        109 QFLILRALLGLL---GG---FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             HHHHHHHHHHHh---hh---hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  122223332   12   23445677888899999999999887766555 344555555543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.23  E-value=0.025  Score=61.74  Aligned_cols=136  Identities=10%  Similarity=-0.015  Sum_probs=90.0

Q ss_pred             HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhhhHHHHHHHHHHHHHHHHHHhhcch
Q 011118          307 FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRI-STLRTGLWSIWSQWFCLLICVASIWIHNS  384 (493)
Q Consensus       307 ~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri-Gl~r~g~~~~~~q~~~L~~~v~~~~~~~~  384 (493)
                      +..-++...++.|+.+ .|+++...+...+...+...++.++.+++..|+ |-.|+-.++.....+...   + ...+..
T Consensus        23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l---l-l~~~~~   98 (493)
T PRK15462         23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV---V-LGASEI   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH---H-HHHhhc
Confidence            4455677788999985 799999999999999999999999999999998 998888777764332211   1 111111


Q ss_pred             HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCC--cchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          385 LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPES--DRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       385 ~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~--~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      ....  +..+..+.-+|...+-.+...++.|..|++  +|++..+...+..++. -+..++.+.+..
T Consensus        99 ~~~~--~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~  163 (493)
T PRK15462         99 HPSF--LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE  163 (493)
T ss_pred             chhH--HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence            0111  111211222343444555667888888765  7988999988888876 444455555543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.23  E-value=0.011  Score=61.92  Aligned_cols=123  Identities=10%  Similarity=0.023  Sum_probs=91.7

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011118          316 MTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGV  395 (493)
Q Consensus       316 ~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi  395 (493)
                      +..+.++.|.++..+|+..++..+...+...+++++..|+|..|...++...+.+...   ...+...+       ..+-
T Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~---~~~~~~~~-------~~~r   95 (393)
T PRK11195         26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL---LMLFGIHP-------LLAY   95 (393)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH---HHHHHHHH-------HHHH
Confidence            3345668899999999999999999999999999999999999998888764433222   21222111       1122


Q ss_pred             HhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          396 ATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       396 ~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      ++..+|.-.+..+...++-|.+|+++|++.+|......++. -++..+.+++..
T Consensus        96 ~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         96 GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456666789999999999999999999999998888876 455566666654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.22  E-value=0.011  Score=63.12  Aligned_cols=118  Identities=9%  Similarity=-0.121  Sum_probs=75.3

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011118          316 MTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGV  395 (493)
Q Consensus       316 ~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi  395 (493)
                      ...|+.+.|+++..+|+..+...++-.++....+++.+|+|..|...++.....   +.+....+.+....+...+..+.
T Consensus        51 ~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~  127 (452)
T PRK11273         51 AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA---AVMLFMGFVPWATSSIAVMFVLL  127 (452)
T ss_pred             hhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH---HHHHHHHhhhcccccHHHHHHHH
Confidence            344666559999999999999999999999999999999999887666554211   11111111110000111222222


Q ss_pred             HhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          396 ATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       396 ~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      .+.+++.-.+.......+.+..|+++||+..|+.+...+..
T Consensus       128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  168 (452)
T PRK11273        128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  168 (452)
T ss_pred             HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Confidence            23333332334555667788899999999999876666654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.18  E-value=0.014  Score=61.01  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=81.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhh
Q 011118          325 IPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWM  404 (493)
Q Consensus       325 ls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~  404 (493)
                      .+..+.|+..++..++..++....+++.+|+|..|.-..+...   +...++...+.+. ..+...++.+-.+..+|.-.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~  143 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALL---FVIGAILMGLAAF-ALSVEMLIVGRVLLGIGVGI  143 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHH---HHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence            4489999999999999999999999999999987776665542   2222222222221 11122344445555556556


Q ss_pred             hhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          405 FDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       405 fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                      +......++.|..|+++||+..+...+..++-..+....+
T Consensus       144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            6778888999999999999999998777766655555555

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10133 L-fucose transporter; Provisional

Probab=97.18  E-value=0.039  Score=58.95  Aligned_cols=123  Identities=13%  Similarity=0.035  Sum_probs=85.7

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      .+.+++.+-.+.|+++.+.|...+.-.++-.++....+++.+|+|..|+-.++...-.+....+......+    +...+
T Consensus        45 ~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~----~~~~l  120 (438)
T PRK10133         45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM----NYTLF  120 (438)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHH
Confidence            44566666447999999999999999999999999999999999999988877763222222111111121    23344


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL  438 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l  438 (493)
                      +.+.++..+|.=..|.+.+.++.+..|+++|++..+...+.+.+-..
T Consensus       121 l~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~  167 (438)
T PRK10133        121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI  167 (438)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Confidence            55566666777788999999998876777776666665555555533

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.14  E-value=0.43  Score=53.26  Aligned_cols=136  Identities=14%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             cchHHHHHHHHHH----HHhhhhhhHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH-HHHHH
Q 011118          294 EVVLPGVSLALLF----FTVLSFGTLMTATLEWEGI-PAYIIGIARGISATIGIAATILYPILQSRISTLRTGL-WSIWS  367 (493)
Q Consensus       294 ~v~la~~alalLy----~tVL~f~~l~~~yl~~~gl-s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~-~~~~~  367 (493)
                      +.|-..+..++++    +.+..+-.++..+..+... +....|..-.....+...|.++.+.+.++++..|--+ .+..+
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            5665555554444    2333455556655554432 2223444444455566677788999999998777553 33333


Q ss_pred             HHHHHHHHHHHHhhcch--HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          368 QWFCLLICVASIWIHNS--LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       368 q~~~L~~~v~~~~~~~~--~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      +..+..  ......+..  ..-.+     .+++.+|.-.......-+.|-.+|+++.|.++|+-.+...+.
T Consensus       390 ~ta~~G--ama~~~~~n~~~~i~~-----~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~G  453 (599)
T PF06609_consen  390 MTAFCG--AMAAVRPDNKNAAIAF-----LVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIG  453 (599)
T ss_pred             HHHHHH--HHHHccCCCcchHHHH-----HHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHh
Confidence            332221  111112211  11122     233344544556666778899999999999998777666554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00896 CynX cyanate transporter

Probab=97.12  E-value=0.019  Score=58.80  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=84.6

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      ++..+..+.++.|+++.+.|...++..++..++....+++.+|+|..|...++....   ....+.. ..+. .   ..+
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~---~~~~~~~-~~~~-~---~~l   90 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLI---AAGILIR-SAPG-T---ALL   90 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHH---HHHHHHH-Hhcc-H---HHH
Confidence            556777777789999999999999999999999999999999999988877766522   1111121 2221 1   122


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhcc
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIIIS  448 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~~  448 (493)
                      +.+-.+..+|.-..+.....+..+..| ++||+.+|...+.+++.. ++..+.+.+..
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  147 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ  147 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222223333333345555566666666 589999999888777663 44444444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.017  Score=60.82  Aligned_cols=293  Identities=16%  Similarity=0.151  Sum_probs=149.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Q 011118           50 DSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTN  129 (493)
Q Consensus        50 ~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  129 (493)
                      ++-..+|+.-.+-.+..++.+|++|.++||..++--|.+...+-..+    .++ +.+.       .+   |..+++.=.
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~s----Til-Fafg-------~s---y~~l~vAR~  167 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLS----TIL-FAFG-------NS---YPMLFVARS  167 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHH----HHH-HHHc-------ch---hHHHHHHHH
Confidence            45567788888889999999999999999999988887776433332    332 2111       11   122222222


Q ss_pred             HHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011118          130 ISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTV  209 (493)
Q Consensus       130 ~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~  209 (493)
                      +-|.-+..++++ ..++--|=.    .+|+ ++=..+- ....--....++||-++|.+++++|...-..+.+..-++.-
T Consensus       168 LQgvgsA~~~ts-glamlAd~f----~~d~-er~~vmG-ialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~  240 (464)
T KOG3764|consen  168 LQGVGSAFADTS-GLAMLADVF----PEDN-ERGSVMG-IALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG  240 (464)
T ss_pred             HhhhhHHHHHhh-hHHHHHHHc----ccch-hhhHHHH-HHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence            333334444433 222211212    2332 2222222 33333456778999999999999996554433333333333


Q ss_pred             HHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhcccccccccee
Q 011118          210 WVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQV  289 (493)
Q Consensus       210 ~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  289 (493)
                      ....+      ...|.     |.+     + +..+     +                ++. .+++.+             
T Consensus       241 ~L~l~------vi~p~-----~~~-----~-~~~~-----~----------------~~~-~~~Ll~-------------  268 (464)
T KOG3764|consen  241 ALQLL------VIEPT-----EMD-----P-DSTE-----Q----------------GTP-MWSLLM-------------  268 (464)
T ss_pred             HHHHh------eeCcc-----ccC-----c-cccc-----c----------------Ccc-HHHHHh-------------
Confidence            32221      11221     000     0 0000     0                000 111111             


Q ss_pred             eecccchHHHHHHHHHHHHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHH
Q 011118          290 YLKQEVVLPGVSLALLFFTVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQ  368 (493)
Q Consensus       290 y~~q~v~la~~alalLy~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q  368 (493)
                        .+-+..+..+.....++.---+.....+-. +-..+..++|+..--.++.=.+||-+++.+.+|++..|   |-...+
T Consensus       269 --dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~---wl~~~~  343 (464)
T KOG3764|consen  269 --DPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR---WLLSLG  343 (464)
T ss_pred             --CchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh---HHHHHH
Confidence              112344444433333222112333334444 34545559999988888999999999999999999776   222211


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcch
Q 011118          369 WFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRC  423 (493)
Q Consensus       369 ~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG  423 (493)
                      - .+..++.+...| .-.+..-+..-....++|.=+.|-+..-.+|..|++++-.
T Consensus       344 g-l~~~G~~~~~iP-~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s  396 (464)
T KOG3764|consen  344 G-LATVGVSSGPIP-FATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVS  396 (464)
T ss_pred             H-HHHHHHHhchhH-hhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcc
Confidence            1 112222222121 0111122222233344666677988888899988776544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.07  E-value=0.031  Score=59.52  Aligned_cols=122  Identities=9%  Similarity=-0.017  Sum_probs=84.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hh----cchHHHHHHHHHHHHh
Q 011118          323 EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WI----HNSLVAAYMLMVGVAT  397 (493)
Q Consensus       323 ~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~----~~~~~s~~~l~~gi~~  397 (493)
                      .|.++.+.|..-+.-.++..+|+++.+++.+|+|-.|...++...-.++...+.... +.    .+.......++.+=++
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            488999999999999999999999999999999998888777664332222221110 10    1122233444455555


Q ss_pred             hhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          398 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       398 SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                      ..+|.-..-.....++.|..|+++||+..|.......+-.+...+.+
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~  176 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVN  176 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666788888999999999999999987665444444444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.04  E-value=0.036  Score=60.22  Aligned_cols=144  Identities=13%  Similarity=0.018  Sum_probs=85.0

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhhhhHHHHHHHHHHHHHHH-HHHhhcchH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRI-----STLRTGLWSIWSQWFCLLICV-ASIWIHNSL  385 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri-----Gl~r~g~~~~~~q~~~L~~~v-~~~~~~~~~  385 (493)
                      ..+.+..|+.+.|.+..++|.+-.++..  ..+.++.+++..|+     |-.|.-+  +..|. ++..+. ...+.+ +.
T Consensus        31 ~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~l--l~~~i-~~~~~~~~~a~~~-~~  104 (491)
T PRK11010         31 TSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWL--LATQL-LLLVAIAAMGFLE-PG  104 (491)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHH--HHHHH-HHHHHHHHHHHcC-Cc
Confidence            4557888999999999999998444433  36788999999998     6433311  11122 222221 111222 11


Q ss_pred             HHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhccCCCCchHHHHHHHHH
Q 011118          386 VAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIIISNPQDFWKLILISVIV  463 (493)
Q Consensus       386 ~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~~~p~~F~~l~~~S~~~  463 (493)
                      .+...+....++..++--..|+....+..|..|+++||+.+|+...-..+.. ++..+.+.+.+.  .++|-...-+.+
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a  181 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMA  181 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHH
Confidence            1222222222233344457899999999999999999999999887766663 333444444431  234444443333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.03  E-value=0.029  Score=58.57  Aligned_cols=138  Identities=16%  Similarity=0.060  Sum_probs=84.8

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      .|+..+....++.|+++.++|..-+...++..++.+..+++.+|+|- |...+...   .+...+......+.   +...
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~gr-r~~~~~~~---~~~~~~~~~~~~~~---~~~~   81 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFK-RWFLFGSL---ATFAAAAGRLLDPF---NYEW   81 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHH---HHHHHHHHHHHHhc---cHHH
Confidence            36667777777899999999999999899999999999999999994 43333222   11111111112211   2222


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH-HhccCCCCchHHHHH
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG-IIISNPQDFWKLILI  459 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~-ii~~~p~~F~~l~~~  459 (493)
                      +..+-++-.+|.=.+ ........|..|+++||+..+...+-+.+-.++....+ .+.+   +++|-...
T Consensus        82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f  147 (368)
T TIGR00903        82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLI  147 (368)
T ss_pred             HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHH
Confidence            222322223333222 34455568899999999999988887777744444443 4433   34554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.02  E-value=0.019  Score=61.52  Aligned_cols=153  Identities=8%  Similarity=0.006  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc--chhHHHHHHHHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL--TYVKVLQIWLVTQNLS   96 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~--~R~~v~~~~~~~q~~~   96 (493)
                      ++.+..+.++..++.-......|.++.+ .+-+....+..-....+..++..+..|.+.||.  ++++......     +
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-----~  316 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF-----A  316 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH-----H
Confidence            4444455555555544444445666655 466777778887778888888889999999984  2333222111     0


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      ....+..++++..    . .+...+...   ..+.|.......+... ++-.|    .+++   ++..+.++.+......
T Consensus       317 ~~~~~l~~ll~~~----~-~~~~~~~i~---~~~~G~~~g~~~~~~~-~~~~~----~~~~---~~~g~~~g~~~~~~~l  380 (455)
T TIGR00892       317 LLFNGLTHLLCAL----A-GDYTGLVIY---CIFFGLSFGSVGALLF-EVLMD----LVGA---QRFSSAVGLVTIVECC  380 (455)
T ss_pred             HHHHHHHHHHHHH----h-chHHHHHHH---HHHHHHHhchHHHHHH-HHHHH----HhhH---HHHhhHHhHHHHHHHH
Confidence            0100111011111    1 111121111   1122322222222211 11112    2232   5678889999999999


Q ss_pred             HHhhhhHHHHHHHHhhh
Q 011118          177 CKLLAPAITGFIISFVS  193 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s  193 (493)
                      +..+||.++|.+.+..+
T Consensus       381 g~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       381 AVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHccccceeeeehhcC
Confidence            99999999999988664

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.00  E-value=0.046  Score=59.22  Aligned_cols=130  Identities=15%  Similarity=0.057  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 011118          313 GTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLM  392 (493)
Q Consensus       313 ~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~  392 (493)
                      +.-+.....+.|.++..+++.-+.-.++...+...++++.+|+|..|.-.++...   +...++.....+ +   ...++
T Consensus        26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~---~~~~~~~~~~a~-~---~~~li   98 (495)
T PRK14995         26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL---FGLASLAAAFSP-T---ASWLI   98 (495)
T ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHcC-C---HHHHH
Confidence            3345556667999999999999988888888889999999999998888776652   222222222232 1   12222


Q ss_pred             HHHHhhhchhhhhhhhhhhhh-hccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          393 VGVATSRLGLWMFDLSVIQQM-QDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       393 ~gi~~SR~GLw~fDl~~~~l~-Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      .+-++..+|--.+-.....++ ++..|+++||+..|+..+...+. -++..+.+.+.+.
T Consensus        99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            222233333333344444434 55668899999999998888877 5566666666554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.97  E-value=0.0093  Score=51.00  Aligned_cols=123  Identities=19%  Similarity=0.211  Sum_probs=71.6

Q ss_pred             HHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhh
Q 011118           63 SASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAG  142 (493)
Q Consensus        63 ~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~  142 (493)
                      .+..++.++..|.+.||.+||+.+..+.....+..       +.....    ...+ .+....   .+.+.......+..
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~-------~~~~~~----~~~~-~~~~~~---~~~g~~~~~~~~~~   72 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLST-------AMFALS----SNIT-VLIIAR---FLQGFGAAFALVAG   72 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHH-------HHHHHh----ccHH-HHHHHH---HHHHHHHHHHHHhH
Confidence            45677889999999999999998876654333321       111111    1111 111111   12233333333222


Q ss_pred             hhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011118          143 TILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVT  208 (493)
Q Consensus       143 ~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S  208 (493)
                      ... -.|+.    ++   ++..+.|+..+........++|.+.|.+.+..+.............++
T Consensus        73 ~~~-~~~~~----~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        73 AAL-IADIY----PP---EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHH-HHHHC----Ch---hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            222 12222    32   467889999999999999999999999998777655554444444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.97  E-value=0.053  Score=58.75  Aligned_cols=116  Identities=11%  Similarity=-0.032  Sum_probs=82.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHhhhch
Q 011118          324 GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN--SLVAAYMLMVGVATSRLG  401 (493)
Q Consensus       324 gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~--~~~s~~~l~~gi~~SR~G  401 (493)
                      ..++...|.+-+...++.++|+++.+++.+|+|-.+.-.++.....++   .++....+.  +..+...++.+-++..+|
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  128 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA---TVASGLSPGSSPKSVMATLCFWRFWLGVG  128 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHHHHHccCcccchHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999877776655422222   222222221  112234556666666677


Q ss_pred             hhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHH
Q 011118          402 LWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYT  442 (493)
Q Consensus       402 Lw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~  442 (493)
                      .-+.......+++|..|+++||+..+.......+-.++...
T Consensus       129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887       129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888999999999999999999887776665444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.93  E-value=0.087  Score=55.80  Aligned_cols=116  Identities=10%  Similarity=-0.024  Sum_probs=76.6

Q ss_pred             CCCch---HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHH
Q 011118          324 GIPAY---IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS----LVAAYMLMVGVA  396 (493)
Q Consensus       324 gls~~---~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~----~~s~~~l~~gi~  396 (493)
                      +.++.   .++...+++.++..+|.++++++..|+|-.|+..+++..   +...++...+.++-    ..+...++..=+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~  132 (432)
T PRK10406         56 GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM---MCFGSLVIACLPGYETIGTWAPALLLLARL  132 (432)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH---HHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Confidence            45554   455566777777779999999999999999988777752   22222232222221    123344445555


Q ss_pred             hhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHH
Q 011118          397 TSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYT  442 (493)
Q Consensus       397 ~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~  442 (493)
                      +..+|.=..-.+...++-|..|+++||+..+......+.-.++...
T Consensus       133 l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406        133 FQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            5556655566778899999999999999988876665555444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.93  E-value=0.055  Score=56.46  Aligned_cols=154  Identities=12%  Similarity=0.139  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAG  101 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~  101 (493)
                      +....++.....-.+....|.++.+.++-+....+.+-....+..++.....|.+.||++||+.+....+.   . ++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~---~-~~~~  296 (393)
T PRK15011        221 LFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVA---G-VCFY  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH---H-HHHH
Confidence            33334444444445556678777776666666666665555566667788999999999999876554321   1 1111


Q ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhh
Q 011118          102 VSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLA  181 (493)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~g  181 (493)
                         ......   . ..+......++.....+   ...... ... -.|..    ++    +..+.++.+..+-.....+|
T Consensus       297 ---~~~~~~---~-~~~~~l~~~~l~~~~~g---~~~~~~-~~~-~~~~~----p~----~~g~~~~~~~~~~~lg~~~g  356 (393)
T PRK15011        297 ---AGMLMA---H-SPAILLGLQLLNAIYIG---ILGGIG-MLY-FQDLM----PG----QAGSATTLYTNTSRVGWIIA  356 (393)
T ss_pred             ---HHHHHH---h-hHHHHHHHHHHHHHHHH---HHHHHH-HHH-HHHhC----CC----CcchHHHHHHHHHHHHHHHH
Confidence               111111   1 11111111111111111   111111 111 11222    22    23455555555566788999


Q ss_pred             hHHHHHHHHhhhhHHHHH
Q 011118          182 PAITGFIISFVSLQASAM  199 (493)
Q Consensus       182 P~~~G~l~~~~s~~~a~~  199 (493)
                      |.++|.+.+..|.+....
T Consensus       357 ~~l~G~i~~~~g~~~~~~  374 (393)
T PRK15011        357 GSLAGIVAEIWNYHAVFW  374 (393)
T ss_pred             HHHHHHHHHHhhhHHHHH
Confidence            999999999877665543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.91  E-value=0.011  Score=63.24  Aligned_cols=137  Identities=9%  Similarity=-0.052  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHH
Q 011118          299 GVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVAS  378 (493)
Q Consensus       299 ~~alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~  378 (493)
                      .+++.+.|+.-..++..+....++.|+++.++|..-++..++..++....+++..|+|..|.-..++..-  .+......
T Consensus        35 ~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~--~~~~~~~~  112 (467)
T PRK09556         35 FIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS--AICMLGFG  112 (467)
T ss_pred             HHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH--HHHHHHHH
Confidence            3333444444445666677666789999999999999999999999999999999999888765554311  11111111


Q ss_pred             HhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          379 IWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       379 ~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      ........+...++..-.+.++|--..-.+...++-+..|+++||+.+|+..+..++..
T Consensus       113 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~  171 (467)
T PRK09556        113 ASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGG  171 (467)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhh
Confidence            11000001222222332333333333345667789999999999999998877666553

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.91  E-value=0.031  Score=61.47  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=103.0

Q ss_pred             ecccchHHHHHHHHHHHHhhhhhhHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH
Q 011118          291 LKQEVVLPGVSLALLFFTVLSFGTLMTA-TLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQW  369 (493)
Q Consensus       291 ~~q~v~la~~alalLy~tVL~f~~l~~~-yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~  369 (493)
                      +|||.|+....-.++-..--.+..+... |.++..=|+..+|+...+..+--++-+..++.+..|+.-.|..+++-.++.
T Consensus         7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~   86 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRA   86 (524)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            5788888776655544322222233333 333566789999999999999999999999999999998888877666554


Q ss_pred             HHHH-HHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhc
Q 011118          370 FCLL-ICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIII  447 (493)
Q Consensus       370 ~~L~-~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~  447 (493)
                      ++.. .+++ .+.+  ..+...+++..++..+|--.++.+.+.++.+.||+++....++......|+.. ++--+.|++.
T Consensus        87 ~~~~~L~~l-~~~~--~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen   87 LVALLLAVL-AFFG--LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             HHHHHHHHH-HHhC--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            3222 2222 2222  12222233333444455667799999999999999999999998887777773 3434555554


Q ss_pred             c
Q 011118          448 S  448 (493)
Q Consensus       448 ~  448 (493)
                      .
T Consensus       164 a  164 (524)
T PF05977_consen  164 A  164 (524)
T ss_pred             H
Confidence            4

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.88  E-value=0.077  Score=57.42  Aligned_cols=118  Identities=11%  Similarity=0.099  Sum_probs=80.8

Q ss_pred             hhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-c---ch
Q 011118          310 LSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-H---NS  384 (493)
Q Consensus       310 L~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~---~~  384 (493)
                      ..++.+.+.+-+ +.|+|++++|.+.++-.+.|-++-+.++++..|+|..|...++..   .+..+.....+. +   ++
T Consensus        51 ~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l---l~~i~~~~~~~a~~~~~~s  127 (462)
T PRK15034         51 MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA---ILIIPCVWLGIAVQNPNTP  127 (462)
T ss_pred             HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH---HHHHHHHHHHHHHcccCCC
Confidence            456667665555 699999999999999888888888899999999999988877765   233333333332 1   12


Q ss_pred             HHH--HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          385 LVA--AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       385 ~~s--~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      ...  +.-++.|+     |- ..-......+.+.-|+++||+..|+.....+.-
T Consensus       128 ~~~lli~r~l~Gi-----gg-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G  175 (462)
T PRK15034        128 FGIFIVIALLCGF-----AG-ANFASSMGNISFFFPKAKQGSALGINGGLGNLG  175 (462)
T ss_pred             HHHHHHHHHHHHH-----HH-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhH
Confidence            222  22223333     21 123667778888999999999999986544433

>PTZ00207 hypothetical protein; Provisional

Probab=96.85  E-value=0.047  Score=60.79  Aligned_cols=121  Identities=13%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             hhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cch-HHH
Q 011118          311 SFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNS-LVA  387 (493)
Q Consensus       311 ~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~-~~s  387 (493)
                      +|+.... .++ +.|++..+++.+-+++...|. ..+.++++..|+|..+...++...   +....+...+. .+. ..+
T Consensus        45 ~fsv~s~-~L~~~lgls~~~l~~i~svg~~~g~-~~lp~G~L~Dr~G~R~vllig~ll---~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         45 AFNLISG-AMQARYNLTQRDLSTITTVGIAVGY-FLLPYSFIYDYLGPRPIFVLSMTV---FCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHH-HHHHHhCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcHHHHHHHHHH---HHHHHHHHHHHhcccccCc
Confidence            4443333 445 689999999999988877775 455689999999998888777652   22222221111 100 012


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          388 AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       388 ~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      ...+....++..+|--.+|........++.| ++||++.|+..+...+-.
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGs  168 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGS  168 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHH
Confidence            3333344445556666778888888888887 679999999988887774

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.81  E-value=0.48  Score=48.23  Aligned_cols=181  Identities=15%  Similarity=0.144  Sum_probs=100.0

Q ss_pred             cchHHHHHHHHHH-HHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHH
Q 011118          294 EVVLPGVSLALLF-FTVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFC  371 (493)
Q Consensus       294 ~v~la~~alalLy-~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~  371 (493)
                      |.|...+.++.+| ..+.+|-++-..|-. .-|+|+..-|...+.--.....-.-+++.+..++|-.  -+|-...-...
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--~~wv~~a~~~t  341 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN--LWWVASACILT  341 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce--ehhHHHHHHHH
Confidence            5677777777776 667888887777776 4799877555444331111111123456677788733  33333211122


Q ss_pred             HHHHHHHHhh-cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          372 LLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       372 L~~~v~~~~~-~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      +..-....++ -.|+.+..++-....+--..+|       ..+--.|||++.|+..|...|+||+- .....+.+++...
T Consensus       342 l~~H~~l~Ft~lsPy~~m~~lGLsysllAcslW-------P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  342 LLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLW-------PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHh-------hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            2221111222 1244444332222222223345       34556789999999999999999998 9999999999877


Q ss_pred             CCCchHHHHHHHHHHHHHH---HHHHHHHHHhhcCCC
Q 011118          450 PQDFWKLILISVIVVTLAA---ILYTFHLYRIRKHLF  483 (493)
Q Consensus       450 p~~F~~l~~~S~~~V~~~~---~l~~~~~~~~Rghl~  483 (493)
                      -+...++=..=.+.+..+.   .+...+-+|.||.|.
T Consensus       415 ~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~gnLN  451 (459)
T KOG4686|consen  415 DGSYDNLEAFFLIIGLMALTSVGILFYLNKKQSGNLN  451 (459)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhheeccccCCCC
Confidence            7654443222222222211   122233466777765

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.80  E-value=0.015  Score=62.13  Aligned_cols=121  Identities=10%  Similarity=0.001  Sum_probs=81.6

Q ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhch
Q 011118          322 WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLG  401 (493)
Q Consensus       322 ~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~G  401 (493)
                      +.|+++...|.+.++-.++.+++.+..+++.+|+|..+...++..   ++.....+..+...  .+...++..-++..+|
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~---~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMF---LSSVISIVIPWAAG--GGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHH---HHHHHHHHHHHHHH--cCchHHHHHHHHHHHh
Confidence            467899999999999999999999999999999998877665553   22222222222110  0112223333333344


Q ss_pred             hhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          402 LWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       402 Lw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      --..-.....++.+..|+++||+.+|...+..++. -++..+.+.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778889999999999999999998877666 44555555554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.70  E-value=0.086  Score=55.68  Aligned_cols=121  Identities=10%  Similarity=0.066  Sum_probs=78.2

Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHh
Q 011118          319 TLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS-LVAAYMLMVGVAT  397 (493)
Q Consensus       319 yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~-~~s~~~l~~gi~~  397 (493)
                      ...+.|.++...+...++-.+++.++.+..+++.+|+|-.|.-.++...   +...++...+.++. ...+.-++.|+..
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~---~~~~~~~~~~a~~~~~l~~~r~l~Gi~~  118 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALI---FTLACAATLFTTSMTQFLIARFIQGTSI  118 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3346799999999999999999999999999999999988877666542   22222222333321 1122223333322


Q ss_pred             hhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHH-HHHHhc
Q 011118          398 SRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAY-TMGIII  447 (493)
Q Consensus       398 SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~-~~~ii~  447 (493)
                         |  .+-.....+.+|..|+++|++..+...+..++...... +.+.+.
T Consensus       119 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        119 ---C--FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             ---H--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1  11233345788889999999999988888777744444 344444

>TIGR00889 2A0110 nucleoside transporter

Probab=96.66  E-value=0.051  Score=57.58  Aligned_cols=122  Identities=14%  Similarity=0.163  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Q 011118           53 LFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISG  132 (493)
Q Consensus        53 l~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g  132 (493)
                      -.++....+..++.++....+|++.||.+||+++..+.+...+.    ..   +....   .. .+..+..+++...+.+
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~----~~---l~~~~---~~-~~~~~~~l~l~~~l~g  319 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR----FG---FFAYG---DP-EYFGYALLFLSMIVYG  319 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----HH---HHHHc---Cc-chhhHHHHHHHHHHHH
Confidence            44466666666777888899999999999999988876433222    11   11111   11 1111111222222334


Q ss_pred             HHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHH-hHHHHHHhhhhHHHHHHHHhhh
Q 011118          133 AVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIR-RIDLTCKLLAPAITGFIISFVS  193 (493)
Q Consensus       133 ~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mr-riDl~~~l~gP~~~G~l~~~~s  193 (493)
                      ....+..+..... -.||.    ++   +...+.++.+. -.-.....+||.++|.+.+..|
T Consensus       320 ~~~~~~~~~~~~~-i~~~~----p~---~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       320 CAFDFFNISGSVF-VEKEV----PV---HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHHHHHHHH-HHHHC----CH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            4444444343332 23343    22   56788888886 4567889999999999998753

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.55  E-value=0.058  Score=56.60  Aligned_cols=161  Identities=13%  Similarity=0.007  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |.++.+....++...+...+....+.+...... +....+.+.....++.++..+..|.+.||.+||+++..+.+...+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            455666777777777766655544554444443 3344566666678889999999999999999999887765332222


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEec-CCCChhhhhhhhhHHHhHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVIS-EGHPPEALTKMNSIIRRIDL  175 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~-~~~~~~~L~~~Na~mrriDl  175 (493)
                          ...  . ...   ....+..+...+    +.+.......+... ++-.|-++.-- +.++ ++-...++...-.+.
T Consensus       301 ----~~~--~-~~~---~~~~~~~~~~~~----~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~G~~~~~~~~~~~  364 (437)
T TIGR00792       301 ----YLI--F-FFA---GSNLPLILVLII----LAGFGQNFVTGLVW-ALVADTVDYGEWKTGV-RAEGLVYSVRTFVRK  364 (437)
T ss_pred             ----HHH--H-HHc---chhHHHHHHHHH----HHHHHHHHHHHHHH-HHHhhhhhhhhhhcCc-cchHHHHHHHHHHHH
Confidence                111  1 111   111111111111    11222111111111 11111111000 0111 335667788888889


Q ss_pred             HHHhhhhHHHHHHHHhhhh
Q 011118          176 TCKLLAPAITGFIISFVSL  194 (493)
Q Consensus       176 ~~~l~gP~~~G~l~~~~s~  194 (493)
                      ++..+||.+.|.+.+..|+
T Consensus       365 ~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       365 LGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9999999999999987664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.53  E-value=0.045  Score=55.64  Aligned_cols=71  Identities=13%  Similarity=-0.031  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHH
Q 011118           19 TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIW   89 (493)
Q Consensus        19 ~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~   89 (493)
                      +.......++...+...+....|.++.+.++.+....+.......+..++..+..|.+.||.+||+.+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            44555566666666767777788888776666667777777777888888899999999999999876544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.49  E-value=1.7  Score=47.26  Aligned_cols=118  Identities=13%  Similarity=0.100  Sum_probs=70.9

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHH-Hhhcc--------hHHH
Q 011118          317 TATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVAS-IWIHN--------SLVA  387 (493)
Q Consensus       317 ~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~-~~~~~--------~~~s  387 (493)
                      ....++.|.+... ...--+-++..+.+|+++..+.+|+|-.+..+++...+.+|....... .....        ....
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            3345567777543 222223334667888888999999998777777777666665543332 22111        1112


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHH
Q 011118          388 AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDL  438 (493)
Q Consensus       388 ~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l  438 (493)
                      +.....-+.   ..-++....-..+.=|..|.+.|+...+.-.+.|+++..
T Consensus       398 ~~~~~~~v~---~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~  445 (513)
T KOG0254|consen  398 IVFLCLFIF---SFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNF  445 (513)
T ss_pred             HHHHHHHHH---HHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHH
Confidence            222221222   122334444445667888999999999999999999843

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.48  E-value=1.2  Score=47.61  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH---HHHH
Q 011118           50 DSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFV---LLVI  126 (493)
Q Consensus        50 ~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~---~l~~  126 (493)
                      +...|+..|.-+..      -.+++-+-|..+.|++++..-+.+.+.    ..    ++...    .+...+-   +.+.
T Consensus        44 ~~i~Pv~tYSyl~~------l~~vflltd~l~Ykpviil~~~~~i~t----~~----lll~~----~sv~~mq~~q~~yg  105 (412)
T PF01770_consen   44 NEIYPVWTYSYLAF------LLPVFLLTDYLRYKPVIILQALSYIIT----WL----LLLFG----TSVLAMQLMQFFYG  105 (412)
T ss_pred             HhhhhHHHHHHHHH------HHHHHHHHHHhhhhHHHHHHHHHHHHH----HH----HHHHH----CcHHHHHHHHHHHH
Confidence            35667777765443      334555789999999876654332222    11    12210    1111110   1111


Q ss_pred             HHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhh
Q 011118          127 LTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS  193 (493)
Q Consensus       127 ~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s  193 (493)
                             +..-+.++....     +=..++  + ++..++-+..|..-+.++..|-+++=++++.-+
T Consensus       106 -------~~~a~evay~sY-----iys~v~--~-~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~  157 (412)
T PF01770_consen  106 -------LATAAEVAYYSY-----IYSVVD--K-EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG  157 (412)
T ss_pred             -------HHHHHHHHHHHH-----heeecC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                   112223444444     333334  3 789999999999999999999999888888543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.42  E-value=0.19  Score=54.62  Aligned_cols=137  Identities=9%  Similarity=-0.024  Sum_probs=86.7

Q ss_pred             HHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhhhHHHHHHHHHHHHHHHHHHhhcch
Q 011118          307 FTVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSR-ISTLRTGLWSIWSQWFCLLICVASIWIHNS  384 (493)
Q Consensus       307 ~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~r-iGl~r~g~~~~~~q~~~L~~~v~~~~~~~~  384 (493)
                      +..-+....+..|++ +.|+++...+...+.-....-....+++++..| +|..|+-.++.....+...++   .+.+..
T Consensus        28 ~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~---~~~~~~  104 (489)
T PRK10207         28 FGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMT---GMSLLK  104 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHH---HHhccc
Confidence            334455667888988 489999998888887777777777899999999 999999988886433222222   222211


Q ss_pred             HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCC--cchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          385 LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPES--DRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       385 ~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~--~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      . .  ++..+.++..+|--.+-.+...++-|..|++  +|++..+......++. -++..+.+.+...
T Consensus       105 ~-~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~  169 (489)
T PRK10207        105 P-D--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK  169 (489)
T ss_pred             h-h--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 1  1223334444555556666777888888776  4566666665555555 3444555565443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.36  E-value=0.33  Score=52.91  Aligned_cols=152  Identities=12%  Similarity=0.005  Sum_probs=86.0

Q ss_pred             ccc-chHHHHHHHHHH-HHhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhhhHHHHHH
Q 011118          292 KQE-VVLPGVSLALLF-FTVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSR-ISTLRTGLWSIWS  367 (493)
Q Consensus       292 ~q~-v~la~~alalLy-~tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~r-iGl~r~g~~~~~~  367 (493)
                      +|| .+...+...+.- +..-+....++.|+. +.|+++...+...+...........+.+++..| +|..|+..++...
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            454 354444443332 333445567888997 589999988877776554444445688999999 5988888777653


Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCc--chhHHHHHHHHHHhh-HHHHHHHH
Q 011118          368 QWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESD--RCVVGGVQNSLQSTM-DLMAYTMG  444 (493)
Q Consensus       368 q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~--rG~v~gv~~sl~~~f-~l~~~~~~  444 (493)
                      ..+..   ....+.+....   .+..+.++-.+|.-.+-.+...++.+..|+++  |++..+..+...++. -++..+.+
T Consensus        98 ~~ig~---~l~~~~~~~~~---~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g  171 (500)
T PRK09584         98 LAIGY---ALVAWSGHDAG---IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP  171 (500)
T ss_pred             HHHHH---HHHHHhcccHH---HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence            32221   11112221111   11222222223333345666778888777654  445566655555555 44556666


Q ss_pred             HhccC
Q 011118          445 IIISN  449 (493)
Q Consensus       445 ii~~~  449 (493)
                      .+...
T Consensus       172 ~l~~~  176 (500)
T PRK09584        172 WLAAK  176 (500)
T ss_pred             HHHHh
Confidence            66543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.35  E-value=2.1  Score=46.53  Aligned_cols=51  Identities=18%  Similarity=0.078  Sum_probs=42.2

Q ss_pred             HhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           46 SVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        46 ~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      ..+.++...+..-+.+..+..++-+...|.+.||++||+++..+.+.+.+.
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~  161 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIF  161 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHH
Confidence            455567777777777788888888888899999999999999998777776

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.32  E-value=0.11  Score=56.25  Aligned_cols=156  Identities=12%  Similarity=0.071  Sum_probs=101.2

Q ss_pred             HHHHHHH-HcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHH--HHHH
Q 011118          315 LMTATLE-WEGIPAYI-IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLV--AAYM  390 (493)
Q Consensus       315 l~~~yl~-~~gls~~~-iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~--s~~~  390 (493)
                      ..+.|+. +.|+++.+ .|...++...+=.+.-+..+++..|+|..|.-.++..   ...+...+..+.. +..  -+.=
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l---~Wsl~t~L~~fa~-Sl~~L~i~R  122 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQAL---SFVCVWLLLLLGT-SVWHMQLME  122 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHH
Confidence            3455776 79999999 9999999999999999999999999998887665553   1222222222321 111  1111


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH-H-hccCCCCchHHHHHHHHHHHHHH
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG-I-IISNPQDFWKLILISVIVVTLAA  468 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~-i-i~~~p~~F~~l~~~S~~~V~~~~  468 (493)
                      ++.|+.      -+.+.+...++-.++|+++|+|++|.-++-..+-..+...++ + ..-.-..+..|-.+|.++++.+.
T Consensus       123 ~llGva------EA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       123 VFYSVT------MAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHH------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence            222222      122337888999999999999999998887776633333322 2 22245567778889999998776


Q ss_pred             HHHHHHHHHhhcC
Q 011118          469 ILYTFHLYRIRKH  481 (493)
Q Consensus       469 ~l~~~~~~~~Rgh  481 (493)
                      .+ ..++-+..+.
T Consensus       197 ~~-a~~LP~~~~s  208 (511)
T TIGR00806       197 FL-ALFLKRPKRS  208 (511)
T ss_pred             HH-HHhCCCCchh
Confidence            44 3444444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09952 shikimate transporter; Provisional

Probab=96.31  E-value=0.37  Score=51.28  Aligned_cols=110  Identities=8%  Similarity=0.016  Sum_probs=69.3

Q ss_pred             CCCchHHHHHH-----HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHH
Q 011118          324 GIPAYIIGIAR-----GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS----LVAAYMLMVG  394 (493)
Q Consensus       324 gls~~~iG~~r-----~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~----~~s~~~l~~g  394 (493)
                      +.++. .|..-     +++-++..+|+++++++..|+|-.|.-.++...   +...+++..+.++-    .++...++.+
T Consensus        56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~  131 (438)
T PRK09952         56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWM---MGIATALIGLLPSFSTIGWWAPVLLVTL  131 (438)
T ss_pred             CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHH---HHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            66665 45543     344455568899999999999988887766652   22233333334321    1223344444


Q ss_pred             HHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          395 VATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       395 i~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      -.+..+|.=..-.+...+..|..|+++||+..+....-..+-.
T Consensus       132 R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952        132 RAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            4555565555556777899999999999998877655444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.31  E-value=0.13  Score=53.36  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=41.6

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRIST  357 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl  357 (493)
                      +...+..|+++.|.|+.++|+..++..+..+++..+.+++..|.|.
T Consensus        23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~   68 (382)
T PRK11128         23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQ   68 (382)
T ss_pred             HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence            4556778999999999999999999999999999999999999985

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.30  E-value=0.18  Score=52.53  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          311 SFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       311 ~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      .+...+..|+++ .|+++.++|++.++..+....+....+++..|+|..|.-.+...
T Consensus        20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~   76 (396)
T TIGR00882        20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS   76 (396)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            355678888885 79999999999999999999999999999999998777665543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.28  E-value=0.68  Score=48.27  Aligned_cols=77  Identities=22%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEF-SVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNL   95 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~F-a~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~   95 (493)
                      |--+.+..-+.+..++|.+.-- .-.++  +-++-+--.++..-....++.+++|+++|.+.||++|||.....-+...+
T Consensus        34 ~Fqr~yl~vY~La~~aDWLQGpY~Y~LY--~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   34 RFQRKYLLVYLLAMAADWLQGPYLYALY--ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            3446677788899999999843 33343  45677777899999999999999999999999999999987766544433

>TIGR00898 2A0119 cation transport protein

Probab=96.25  E-value=0.093  Score=56.45  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             HcCCC---chHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Q 011118          322 WEGIP---AYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATS  398 (493)
Q Consensus       322 ~~gls---~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~S  398 (493)
                      +.|++   +...|+..++..++.++|.++.+++..|+|-.+...++.....   +.++...+.+ +   ...++..-++.
T Consensus       118 e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~---i~~~~~~~~~-~---~~~~~~~r~l~  190 (505)
T TIGR00898       118 EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTA---VSGVLTAFSP-N---YTVFLVFRLLV  190 (505)
T ss_pred             EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHH---HHHHHHHHcc-c---HHHHHHHHHHH
Confidence            56777   8899999999999999999999999999998777766554322   2222222333 2   22233333444


Q ss_pred             hchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          399 RLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       399 R~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                      .+|.-..-.....++.|.+|+++||++.+.......+..+.....+
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  236 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA  236 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566777888999999999999999887544444333333333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.24  E-value=0.15  Score=55.48  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=96.1

Q ss_pred             hHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhhhhHHHHHHHHHHHHHHH-HHHhhcc-----
Q 011118          314 TLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQS----RISTLRTGLWSIWSQWFCLLICV-ASIWIHN-----  383 (493)
Q Consensus       314 ~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~----riGl~r~g~~~~~~q~~~L~~~v-~~~~~~~-----  383 (493)
                      +.++.|+.+.|+++...|....++.+.|++...+.+.+..    |+|-.|.-++...   .....+. +..+.+.     
T Consensus        25 ~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~---~~~~~~l~ll~~~~~~~~~~  101 (477)
T TIGR01301        25 SLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA---ALVAFAVILIGFAADIGHLF  101 (477)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH---HHHHHHHHHHHhCchhhhhc
Confidence            3566688899999999999999999999999999999998    5897776554322   1111111 1122221     


Q ss_pred             --------hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcc--hhHHHHHHHHHHhhHHHHHHHHHhc------
Q 011118          384 --------SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDR--CVVGGVQNSLQSTMDLMAYTMGIII------  447 (493)
Q Consensus       384 --------~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~r--G~v~gv~~sl~~~f~l~~~~~~ii~------  447 (493)
                              .......++.++.+..+..=.+......++=|.+|+++|  ++.++.++...++-.++.++++-+.      
T Consensus       102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~  181 (477)
T TIGR01301       102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF  181 (477)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence                    011122333333322232223333444677888998865  6899988888887776666666432      


Q ss_pred             cC---------CCCchHHHHHHHHHHHHHHHHHHHH
Q 011118          448 SN---------PQDFWKLILISVIVVTLAAILYTFH  474 (493)
Q Consensus       448 ~~---------p~~F~~l~~~S~~~V~~~~~l~~~~  474 (493)
                      +.         |.+++..-.++.........+-+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~  217 (477)
T TIGR01301       182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSA  217 (477)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence            11         2356666666665555544444444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.08  E-value=0.3  Score=50.68  Aligned_cols=148  Identities=11%  Similarity=0.014  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHh-hh---hhhHHHHHHHHcCCCchHHHHHH--HHHHHHHHHHHHHH-HHHHhhhchhhhhHHHHHHHHHH
Q 011118          299 GVSLALLFFTV-LS---FGTLMTATLEWEGIPAYIIGIAR--GISATIGIAATILY-PILQSRISTLRTGLWSIWSQWFC  371 (493)
Q Consensus       299 ~~alalLy~tV-L~---f~~l~~~yl~~~gls~~~iG~~r--~~~av~GllgT~~~-~~l~~riGl~r~g~~~~~~q~~~  371 (493)
                      .+.++.+|++- +.   ....+..|++++|+++.++|++-  ++..+..++.+-+- ++..+|+|..|.-++.  .|...
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~--~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLP--MQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHH--HHHHH
Confidence            45667888753 33   33577889999999999999983  44455554444333 3345567766663222  23221


Q ss_pred             H-HHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHH-hhHHHHHHHHHhccC
Q 011118          372 L-LICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQS-TMDLMAYTMGIIISN  449 (493)
Q Consensus       372 L-~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~-~f~l~~~~~~ii~~~  449 (493)
                      . .......+.+.... ...++....+.-+.--..|.....+.-|..++++++..++.+..-.. ++-++..+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~  159 (390)
T TIGR02718        81 SACLASLALVGPDVAG-AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHcCCcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11111111111111 11112222333344455688777777777788888887777765423 335555555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.05  E-value=0.41  Score=52.11  Aligned_cols=181  Identities=16%  Similarity=0.144  Sum_probs=112.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchh--HHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYV--KVLQIWLVTQN   94 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~--~v~~~~~~~q~   94 (493)
                      |+..++.++.++-.=|-..---...++....+.=|.....+++++..+..++.+...|.+-||.+-|  +++..+++.=.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            4556677777776656555555556667777888889999999999999999999999888888655  66666553221


Q ss_pred             HHHHHHHHHHHHHH--hhccc-ccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHH
Q 011118           95 LSFIVAGVSVITLL--FFSSL-KSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIR  171 (493)
Q Consensus        95 ~~v~~s~~~~~~~l--~~~~~-~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mr  171 (493)
                      +.    +.  +.++  .+... ....|..+..-++..+..|.....+-         -....+..+   ++-.+.-+...
T Consensus       361 ~i----~~--~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sR---------s~~~~LiP~---g~e~efFgly~  422 (477)
T PF11700_consen  361 II----PL--YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASR---------SLFSRLIPP---GREAEFFGLYA  422 (477)
T ss_pred             HH----HH--HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHH---------HHHHHhCCC---chhhHHHHHHH
Confidence            11    11  1111  11111 11122222221212223333333333         234455555   45689999999


Q ss_pred             hHHHHHHhhhhHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          172 RIDLTCKLLAPAITGFIISFVS-LQASAMTLAIWTTVTVWVEYWLFMSV  219 (493)
Q Consensus       172 riDl~~~l~gP~~~G~l~~~~s-~~~a~~~i~~~n~~S~~ve~~~l~~V  219 (493)
                      -.|..+..+||++.|.+.+..| .+.+...+.+    =+++-..++.+|
T Consensus       423 i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~----lf~~gl~ll~~v  467 (477)
T PF11700_consen  423 ITGKASSWLGPLLFGLITDATGSQRYGFLFLLV----LFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH----HHHHHHHHHhhc
Confidence            9999999999999999999886 7777744444    344444555544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.03  E-value=0.43  Score=50.52  Aligned_cols=122  Identities=9%  Similarity=-0.004  Sum_probs=73.8

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHH------HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIAR------GISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS  384 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r------~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~  384 (493)
                      .++...+...++.|.++...+...      +.+.+...+|+++.+++.+|+|-.|.-.++...   +....+...+.+ +
T Consensus        33 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~---~~~~~~l~~~~~-~  108 (434)
T PRK15075         33 LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI---MASGTLLIAFVP-G  108 (434)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH---HHHHHHHHHhCC-c
Confidence            344444444446888887765443      222333346889999999999988887766652   222222223333 2


Q ss_pred             HHH-----HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          385 LVA-----AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       385 ~~s-----~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      ...     ...++.+-++..+|.-..-.+...++-|..|+++||+..+......+..
T Consensus       109 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g  165 (434)
T PRK15075        109 YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA  165 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence            111     1123444444445443334556678999999999999999988877655

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.91  E-value=0.064  Score=56.74  Aligned_cols=79  Identities=18%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |.++.++..+++...+..+..-..+.+..+...+. -..+.+.....++.++..+..+...||.+|||++..+.+...+.
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG  303 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence            67899999999999999998888888888888877 56688888899999999999999999999999998887554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=95.79  E-value=0.36  Score=57.65  Aligned_cols=118  Identities=7%  Similarity=-0.006  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhh
Q 011118          328 YIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDL  407 (493)
Q Consensus       328 ~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl  407 (493)
                      ..+|+..++..+..++.+.+++++..|+|..|...+.......+...+...++.+    +...++.+-++..+|--.+..
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~~~l~gi~~a~~~p  127 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLN----SVPLLFAALFLMGIHSALFGP  127 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhhch
Confidence            5678888888899999999999999999987754333332222332222222222    233444455555566667789


Q ss_pred             hhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          408 SVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       408 ~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      +...++-+.+|+++|++.+|...+..++. -++..+.+++...
T Consensus       128 ~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        128 IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998888888 4556666666553

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.75  E-value=1.1  Score=48.38  Aligned_cols=98  Identities=9%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHHhhhchhhhhhhhh
Q 011118          334 RGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNS----LVAAYMLMVGVATSRLGLWMFDLSV  409 (493)
Q Consensus       334 r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~----~~s~~~l~~gi~~SR~GLw~fDl~~  409 (493)
                      .+++-++-.+|.++++++..|+|-.|+..+++..-   ....++..+.++-    .++..+++.+-++..+|.=..-.+.
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~---~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~  139 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIM---SISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGA  139 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH---HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHH
Confidence            35556777799999999999999999888777632   2222222233321    1222334444445555555556778


Q ss_pred             hhhhhccCCCCcchhHHHHHHHHHH
Q 011118          410 IQQMQDLVPESDRCVVGGVQNSLQS  434 (493)
Q Consensus       410 ~~l~Qe~vp~~~rG~v~gv~~sl~~  434 (493)
                      ..++.|..|+++||+..+....-..
T Consensus       140 ~~~~~e~~p~~~Rg~~~~~~~~~~~  164 (490)
T PRK10642        140 SIFVAEYSPDRKRGFMGSWLDFGSI  164 (490)
T ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            8899999999999999887654443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.62  E-value=0.63  Score=48.31  Aligned_cols=46  Identities=20%  Similarity=0.267  Sum_probs=41.3

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRIST  357 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl  357 (493)
                      +.+.+..|+++.|+++.++|+..++..+...++..+.+++..|.|-
T Consensus        23 ~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~   68 (382)
T TIGR00902        23 FLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANH   68 (382)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4556779999999999999999999999999999999999999883

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.47  E-value=0.28  Score=53.46  Aligned_cols=137  Identities=18%  Similarity=0.123  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhh
Q 011118          329 IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       329 ~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~  408 (493)
                      ..+++-+.-.+++.+|.++++++..++|-.++.+.+..   .+.+..+...+++    +...+..|=++..+|.-.....
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~---~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~  162 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVV---LFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVL  162 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhc
Confidence            45899999999999999999999999998888876665   3444444434333    6777888888899999999988


Q ss_pred             hhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCC--CCchHHHHHHHHHHHHHHHHHH
Q 011118          409 VIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNP--QDFWKLILISVIVVTLAAILYT  472 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p--~~F~~l~~~S~~~V~~~~~l~~  472 (493)
                      +.-+.=|..|++.||...+...-...+--+..|+.+...+..  +=+-.+.+..+.++.....++.
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~  228 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLF  228 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888999999999977776666677778888887764  2223334444445554444444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.47  E-value=1.1  Score=47.48  Aligned_cols=161  Identities=17%  Similarity=0.106  Sum_probs=102.3

Q ss_pred             ccchHHHHHHHHHHH---Hh-hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHH
Q 011118          293 QEVVLPGVSLALLFF---TV-LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQ  368 (493)
Q Consensus       293 q~v~la~~alalLy~---tV-L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q  368 (493)
                      ++...+.+++++--|   |. +-..++++.-..+.|+|+...|.+-++-|.+..+++.....+.+|+.-.|.-++...  
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~--   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA--   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--
Confidence            344445555553333   22 457788888888999999999999999999999999999999999996666554443  


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHH---HHHhh--HHHHHHH
Q 011118          369 WFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNS---LQSTM--DLMAYTM  443 (493)
Q Consensus       369 ~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~s---l~~~f--~l~~~~~  443 (493)
                       +|....+++.+.|    +..+++.+=+++.+.+=.|=-....+-=+.||+++|+|.-|+..+   +....  |++.++.
T Consensus        87 -lFi~~n~l~alAp----~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig  161 (394)
T COG2814          87 -LFIVSNLLSALAP----SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG  161 (394)
T ss_pred             -HHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence             3333334434343    223333333333333334445555666688999999998886653   33333  8888887


Q ss_pred             HHhccCCCCchHHHHHHH
Q 011118          444 GIIISNPQDFWKLILISV  461 (493)
Q Consensus       444 ~ii~~~p~~F~~l~~~S~  461 (493)
                      ..+ .+-..|.....+++
T Consensus       162 ~~~-GWR~~F~~ia~l~l  178 (394)
T COG2814         162 QLF-GWRATFLAIAVLAL  178 (394)
T ss_pred             HHh-hHHHHHHHHHHHHH
Confidence            766 23334444443333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.38  E-value=0.16  Score=54.06  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             ecccchHHHHHHHHHHHHhh-hhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          291 LKQEVVLPGVSLALLFFTVL-SFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       291 ~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      .+++.+.-.-..-++||... .+-+....|+.+ .|+++.++|+..+++++..++.-.+++.+..|+|..|.-++.+.
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~   81 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIA   81 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHH
Confidence            44544443333344454443 366678889985 99999999999999999999999999999999999998887665

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.01  E-value=0.37  Score=52.31  Aligned_cols=129  Identities=12%  Similarity=0.019  Sum_probs=85.4

Q ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhch
Q 011118          322 WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLG  401 (493)
Q Consensus       322 ~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~G  401 (493)
                      +-..++.+-|.+.+.-+.|.+++.+-.+++.+|+|..|.-.++..   +......+.++...  .+...++..=++-.++
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~---~sa~~t~l~P~aa~--~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGL---ISALLTLLTPLAAS--IGFYLLLVLRFLQGLG  141 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHH---HHHHHHHHHHHHHH--hcchhhHHHHHHhHHH
Confidence            356688999999999999999999999999999999887665554   22223333333210  1111112222222233


Q ss_pred             hhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHH-HHHHhccCCCCchHHH
Q 011118          402 LWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAY-TMGIIISNPQDFWKLI  457 (493)
Q Consensus       402 Lw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~-~~~ii~~~p~~F~~l~  457 (493)
                      --.-=.+...+..++.|++||++..++-.+-.++..+..+ +.|.+...  ++||..
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~s  196 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPS  196 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCch
Confidence            3333467788899999999999999999998877755555 66665544  444444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.99  E-value=0.84  Score=49.75  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhh
Q 011118          331 GIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVI  410 (493)
Q Consensus       331 G~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~  410 (493)
                      +..-+.-.+||+.|+++.+++..|+|-..+-..+...   ....++...+.. ...+.-++..|-.+..+..=..+-.+.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l---~~~~~~~~~~s~-~~~~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLL---AVLAALLMGLSK-SAPSFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH---HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3444555679999999999999999966554444432   222222222221 111223333443333333333466777


Q ss_pred             hhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH--HhccCCCCchHHHHHHHH
Q 011118          411 QQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG--IIISNPQDFWKLILISVI  462 (493)
Q Consensus       411 ~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~--ii~~~p~~F~~l~~~S~~  462 (493)
                      -++||.-|++.||.++......-.+..+++.+++  -++.+++.-+++-..+..
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i  192 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI  192 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence            7899999999999988766655555555554444  233444444444444443

>PRK09848 glucuronide transporter; Provisional

Probab=94.89  E-value=0.9  Score=48.24  Aligned_cols=160  Identities=13%  Similarity=0.011  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      |.+..+....++...+--.+....|.++.+.+..+....+++.....+..++.++..|++.||.++++++..+.+...+.
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCG  307 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            45666777777777776677666777777777666554444444345667778899999999999999988776433222


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCC----hhhhhhhhhHHHh
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHP----PEALTKMNSIIRR  172 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~----~~~L~~~Na~mrr  172 (493)
                          +.. +. +.+   ....|..+..++    +.+....+..+. ..+.    +...++.|+    .++-...++...-
T Consensus       308 ----~~~-~~-~~~---~~~~~~~~~~~~----l~g~G~~~~~~~-~~al----~~~~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        308 ----YLL-FF-WVS---VWSLPVALVALA----IASIGQGVTMTV-MWAL----EADTVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             ----HHH-HH-HcC---chhHHHHHHHHH----HHHHHHHHHHHH-HHHH----HHHhhhhhHHhhCccchhHHHHHHHH
Confidence                221 11 111   111122211111    122222222222 1111    111112110    0123556777777


Q ss_pred             HHHHHHhhhhHHHHHHHHhhhh
Q 011118          173 IDLTCKLLAPAITGFIISFVSL  194 (493)
Q Consensus       173 iDl~~~l~gP~~~G~l~~~~s~  194 (493)
                      .+.++..+||.+.|.+++..|+
T Consensus       370 ~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        370 TRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            8889999999999999887664

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.65  E-value=0.3  Score=54.95  Aligned_cols=135  Identities=10%  Similarity=0.046  Sum_probs=95.1

Q ss_pred             hhhhh-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHH-HHHHHHHHHhhcc----
Q 011118          310 LSFGT-LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWF-CLLICVASIWIHN----  383 (493)
Q Consensus       310 L~f~~-l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~-~L~~~v~~~~~~~----  383 (493)
                      -++-+ ..+..-++-|+++.+.|++-+.--++..++.+..+++..|.|-.|...++...-.+ +++.++..+..+.    
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~  128 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS  128 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence            34434 34444446899999999999999999999999999999999977765555431111 1111111111100    


Q ss_pred             ---------h------------------------------HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchh
Q 011118          384 ---------S------------------------------LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCV  424 (493)
Q Consensus       384 ---------~------------------------------~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~  424 (493)
                               +                              .....+++.+-++..+|.-.+-.....++-|++|+++|++
T Consensus       129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~  208 (633)
T TIGR00805       129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL  208 (633)
T ss_pred             ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence                     0                              0124456677888888888888888999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHH
Q 011118          425 VGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       425 v~gv~~sl~~~f~l~~~~~~  444 (493)
                      ..|+..+...+.+.+.++++
T Consensus       209 ~~~i~~~~~~iG~~lG~llg  228 (633)
T TIGR00805       209 YIGILESIAVFGPAFGYLLG  228 (633)
T ss_pred             HHHHHHHHHHhhhHHHHHHH
Confidence            99999999888877666665

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.61  E-value=0.37  Score=51.31  Aligned_cols=168  Identities=13%  Similarity=0.081  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHH
Q 011118          296 VLPGVSLALLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLIC  375 (493)
Q Consensus       296 ~la~~alalLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~  375 (493)
                      +-.-++++.-|++=-+|+-.|..-..+.|++.+++|++.++-.++==++-++.+.+..|.++.+-...++.      +.+
T Consensus        32 ~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi------lsa  105 (448)
T COG2271          32 LSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI------LSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH------HHH
Confidence            34557788999988888877775444566999999999999777767899999999999998876555553      111


Q ss_pred             HHHHhhcchHHHHHHHHHHHHhhhchh-hhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHH--HHhccCCC
Q 011118          376 VASIWIHNSLVAAYMLMVGVATSRLGL-WMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTM--GIIISNPQ  451 (493)
Q Consensus       376 v~~~~~~~~~~s~~~l~~gi~~SR~GL-w~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~--~ii~~~p~  451 (493)
                      +.....+- ..++.++....++..+.= |+. ..-...+-.+-|.+|||+.-++=++-.|+- -+...+.  +.+...-+
T Consensus       106 i~nil~Gf-s~s~~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~  183 (448)
T COG2271         106 IVNILFGF-SPSLFLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG  183 (448)
T ss_pred             HHHHHHhh-hhHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence            22222211 114444444333332211 111 223334456789999999999888777766 4444444  55655445


Q ss_pred             CchHHHHHHHHHHHHHHHHH
Q 011118          452 DFWKLILISVIVVTLAAILY  471 (493)
Q Consensus       452 ~F~~l~~~S~~~V~~~~~l~  471 (493)
                      -......-++.++..|.+++
T Consensus       184 w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         184 WRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            55555555666666554433

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.52  E-value=0.25  Score=39.98  Aligned_cols=52  Identities=21%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLW  363 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~  363 (493)
                      +-.-...|++++|+++.++|++.++.-...++++.+.+.+.+|.|-.|..+.
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~   70 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL   70 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence            4446778888999999999999999999999999999999999998777653

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.38  E-value=1.1  Score=48.12  Aligned_cols=119  Identities=7%  Similarity=0.014  Sum_probs=77.5

Q ss_pred             hHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhhh-hHHHHHHHHHHHHHHHHHHhhcc---h
Q 011118          314 TLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRI----STLRT-GLWSIWSQWFCLLICVASIWIHN---S  384 (493)
Q Consensus       314 ~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri----Gl~r~-g~~~~~~q~~~L~~~v~~~~~~~---~  384 (493)
                      ..+..|.++ .|+++..+|.+..++-+.....-.+.+.+..|.    |-.|- -+++..    ....+....|.++   .
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i----~~~i~~~llf~~p~~~~  102 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL----ANSVVLFLLFSAHLFEG  102 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH----HHHHHHHHHHcCCCCCc
Confidence            334556664 799999999999999998888888888888854    64332 222221    1111212223321   1


Q ss_pred             HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccC-CCCcchhHHHHHHHHHHhh
Q 011118          385 LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLV-PESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       385 ~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~v-p~~~rG~v~gv~~sl~~~f  436 (493)
                      ......++...++.+++...+|+....+.=|.. +++||.++++..+...++.
T Consensus       103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig  155 (473)
T PRK10429        103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLA  155 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            122333444455567888888999999998888 6889999999866655544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=92.99  E-value=2.1  Score=45.60  Aligned_cols=141  Identities=15%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             chHHHHHHHHHHHHh-hhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHH
Q 011118          295 VVLPGVSLALLFFTV-LSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLL  373 (493)
Q Consensus       295 v~la~~alalLy~tV-L~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~  373 (493)
                      .+..+...-.+.|.| .-++.+++..-..-|+|+.+.+++-++-.+.|-+-=+.++.+..|+|-.+....+..   +.++
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~---l~~I   91 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML---LLLI   91 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH---HHHH
Confidence            444444444444444 346666664444799999999999999999999999999999999998888776665   5677


Q ss_pred             HHHHHHhh--cch--HHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          374 ICVASIWI--HNS--LVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       374 ~~v~~~~~--~~~--~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                      |+....+.  .++  ..-+..++.|+.-..+-.-+      ...-+.-|++++|..+|+...=|.+..+..++.=
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m------~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P  160 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM------PNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAP  160 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcccceehccc------ccccccCChhhhhHHHHHhccccccHHHHHHHHH
Confidence            77665554  222  22333444444433332222      2334677999999999998733333344444433

>PRK09669 putative symporter YagG; Provisional

Probab=92.60  E-value=2.5  Score=44.82  Aligned_cols=118  Identities=14%  Similarity=0.103  Sum_probs=73.3

Q ss_pred             HHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhch----hhhhH-HHHHHHHHHHHHHHHHHhhcc--hHHH
Q 011118          316 MTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRIST----LRTGL-WSIWSQWFCLLICVASIWIHN--SLVA  387 (493)
Q Consensus       316 ~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl----~r~g~-~~~~~q~~~L~~~v~~~~~~~--~~~s  387 (493)
                      +..|.+ ..|+|+..+|.+..++.+.......+.+.+..|.+.    .|--+ ++..   .+.....+.++.|.  ....
T Consensus        32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~---~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI---PFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH---HHHHHHHHHHhCCCCCcchH
Confidence            344444 589999999999999999988888888999888552    22211 2211   11122222233432  1122


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhhhhhccC-CCCcchhHHHHHHHHHHhh
Q 011118          388 AYMLMVGVATSRLGLWMFDLSVIQQMQDLV-PESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       388 ~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~v-p~~~rG~v~gv~~sl~~~f  436 (493)
                      ...+.+...+...+...+++....+.=|.. ++++|++.++......+..
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G  158 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIG  158 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            333333334446666778888888887776 5678998888776665554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=92.51  E-value=7.9  Score=40.75  Aligned_cols=165  Identities=13%  Similarity=0.074  Sum_probs=105.8

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      +.+.+.-.--.+.|+|.+..|++-++=.+.==+-+...|++.||+|..|+-.+++.    ++..+.  .+-  +......
T Consensus        30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Ll----li~~G~--~iR--~~~~~~~  101 (395)
T COG2807          30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALL----LIAAGI--LIR--SLGGLPL  101 (395)
T ss_pred             hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHH----HHHHHH--HHH--hcccHHH
Confidence            44455443333689999999999988776655677888999999999999876553    333222  221  2225667


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVIVVTLAAI  469 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~  469 (493)
                      ++.|..+...|.=.-|+-.-.++++.-|++ -|.++|+...--+.. -+.+....=+...-  ++|=....+-+..+...
T Consensus       102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allA  178 (395)
T COG2807         102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLA  178 (395)
T ss_pred             HHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHH
Confidence            778888888888888999999999999876 678888876544443 55554444333222  35655555555554433


Q ss_pred             HHHHHHHH-hhc-CCCChhh
Q 011118          470 LYTFHLYR-IRK-HLFHFDK  487 (493)
Q Consensus       470 l~~~~~~~-~Rg-hl~h~~~  487 (493)
                      +. .|.-. .|+ |.-|-.+
T Consensus       179 l~-~WlPq~~r~~~~~~~~~  197 (395)
T COG2807         179 LL-IWLPQALREQAASIATK  197 (395)
T ss_pred             HH-HHhhhcccccccccccc
Confidence            33 33222 343 5555544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=91.89  E-value=6.8  Score=43.91  Aligned_cols=133  Identities=10%  Similarity=-0.018  Sum_probs=75.2

Q ss_pred             eeecccchHHHHHHHHHHH----HhhhhhhHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Q 011118          289 VYLKQEVVLPGVSLALLFF----TVLSFGTLMTATLE-WEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLW  363 (493)
Q Consensus       289 ~y~~q~v~la~~alalLy~----tVL~f~~l~~~yl~-~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~  363 (493)
                      -|++.|.+.++++...+++    .++...+-...|.. +.|=+ ...+++-+.-.+..-.+..+.++|...+|- |-..+
T Consensus        35 g~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGR-r~~~i  112 (599)
T PF06609_consen   35 GYYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGR-RYFFI  112 (599)
T ss_pred             CceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcc-hHHHH
Confidence            3567888888876544432    12333233334666 46644 344445455555555666677888888883 33222


Q ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHH
Q 011118          364 SIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQN  430 (493)
Q Consensus       364 ~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~  430 (493)
                      .-.  .+.+...+..    ...-++-.+..|.++..+| -+......-.++|.+|.+.|+...++..
T Consensus       113 ~g~--~l~vvG~Iv~----atA~~~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~  172 (599)
T PF06609_consen  113 IGS--LLGVVGSIVC----ATAQNMNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIAS  172 (599)
T ss_pred             HHH--HHHHhHHHHh----hcCCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHH
Confidence            111  1222222211    1223455667788888887 4666666667899999998887655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=91.06  E-value=26  Score=37.97  Aligned_cols=162  Identities=12%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             HHHH-HHhhhhhhHHHHHH---HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh-hHHHHHHHHHHHHHHHH
Q 011118          303 ALLF-FTVLSFGTLMTATL---EWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRT-GLWSIWSQWFCLLICVA  377 (493)
Q Consensus       303 alLy-~tVL~f~~l~~~yl---~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~-g~~~~~~q~~~L~~~v~  377 (493)
                      ++.| ..+-.|.++++.--   .-+|++...-|..-..+.+.|++|+.+++.+..|.+--+. ......    .-..+++
T Consensus       272 ~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~----~~~v~~~  347 (480)
T KOG2563|consen  272 AICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYL----FALVGTL  347 (480)
T ss_pred             HHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHHHHHH
Confidence            3444 23334666655444   2478887778888888899999999999999988775443 221111    1111111


Q ss_pred             HHh--hcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccC-CCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCC--
Q 011118          378 SIW--IHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLV-PESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQ--  451 (493)
Q Consensus       378 ~~~--~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~v-p~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~--  451 (493)
                      .+.  +..+..++.++.....+- +..-++=..-..+==|.+ |+.|+. =+|+.+...+.| -...+.++....+++  
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g-~~~~~~~Pig~ElgvE~TyPv~E~t-SsGll~~~gq~f~~~~~~~~~~~~~~~~~~  425 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLG-FFGTGYLPIGFELGVETTYPVAEGT-SSGLLNLSGQIFGVILVFIMGILAEDLGPP  425 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHH-HhhcCCCCcceeeeeeeccccCCcc-cceeEEeehhHHHHHHHHHHHHHhhccCCC
Confidence            111  111222222222221110 001111122222333555 666553 466667777777 778888999999998  


Q ss_pred             --CchHHHHHHHHHHHHHHHH
Q 011118          452 --DFWKLILISVIVVTLAAIL  470 (493)
Q Consensus       452 --~F~~l~~~S~~~V~~~~~l  470 (493)
                        .+...+.....++......
T Consensus       426 ~~~~~~~i~~~~~~~l~~~lv  446 (480)
T KOG2563|consen  426 GNTFPANIFLTVSALLGAILV  446 (480)
T ss_pred             CCCccchhHhHHHHHHHHHHH
Confidence              8877776666666544433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=90.93  E-value=6.6  Score=41.81  Aligned_cols=120  Identities=6%  Similarity=-0.003  Sum_probs=88.1

Q ss_pred             hhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          313 GTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       313 ~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      .+.++..+++ -+++..+.+...-.-=.+=.++.+.++++.||+|-.++-..++.   ++...|.+ +|.......-..|
T Consensus        32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~---l~avg~~l-F~pAa~~~~y~~F  107 (422)
T COG0738          32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL---LYAVGAAL-FWPAASSKSYGFF  107 (422)
T ss_pred             chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHH---HHHHHHHH-HhhhhhhhhHHHH
Confidence            3466667775 89999999988877666667899999999999999998887775   45554443 4433345566777


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      +++......|+-..|.+.+.++-..=|++.-.+=.+...++|.+-
T Consensus       108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lG  152 (422)
T COG0738         108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLG  152 (422)
T ss_pred             HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhH
Confidence            888888889999999999999998887754444444444444444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=90.72  E-value=0.00041  Score=73.42  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             HHcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHH-HHHhh-cch----HHHHHHHHH
Q 011118          321 EWEGIPAY-IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICV-ASIWI-HNS----LVAAYMLMV  393 (493)
Q Consensus       321 ~~~gls~~-~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v-~~~~~-~~~----~~s~~~l~~  393 (493)
                      ++.|.++. ......   .+..+.+++.+..+.+|+|-.+.-+.+.....+|..... ...+. ..+    .........
T Consensus       281 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  357 (451)
T PF00083_consen  281 ENAGISNSFLATLIL---GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLAL  357 (451)
T ss_pred             ccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeee
Confidence            35777776 233222   246677788888888999866565555543333322211 11121 111    111111111


Q ss_pred             HHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhccCCC
Q 011118          394 GVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIIISNPQ  451 (493)
Q Consensus       394 gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~~~p~  451 (493)
                      ..+  .++ .+.......+..|..|.+.|++..|.-.+++++.. +..++...+....+
T Consensus       358 ~~~--~~~-~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~  413 (451)
T PF00083_consen  358 FFA--FFS-LGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG  413 (451)
T ss_pred             ccc--ccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            111  111 13355555777999999999999999999888663 33334444443433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=90.68  E-value=15  Score=36.64  Aligned_cols=145  Identities=10%  Similarity=0.080  Sum_probs=85.7

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh------c-c
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI------H-N  383 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~------~-~  383 (493)
                      .|+.--.......|++-.++..+-.++-+++-+| +..+.+-.+.|+-.+-.++..    +...+-...|.      + .
T Consensus        20 ~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~----~~~~GY~~~~l~~~~~i~~~   94 (250)
T PF06813_consen   20 TFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAV----LGFVGYGLLWLAVSGRIPSL   94 (250)
T ss_pred             chhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHhCccCcc
Confidence            3444444333368999999999998888888876 788999999997665555543    11111112221      1 2


Q ss_pred             hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHHHHHHHH
Q 011118          384 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKLILISVI  462 (493)
Q Consensus       384 ~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l~~~S~~  462 (493)
                      +.+...   .-..+...|--.+|-+...---++-|+ +||.+.|+.-+..-+. .+.+.+-..++++ +.-.++.+.+..
T Consensus        95 ~~~~~~---~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~  169 (250)
T PF06813_consen   95 PVWLMC---LFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVL  169 (250)
T ss_pred             chHHHH---HHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            233322   222233344444555433333355675 7999999999988887 6666666666555 444445555554


Q ss_pred             HHH
Q 011118          463 VVT  465 (493)
Q Consensus       463 ~V~  465 (493)
                      ...
T Consensus       170 ~~~  172 (250)
T PF06813_consen  170 PAV  172 (250)
T ss_pred             HHH
Confidence            443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=89.90  E-value=8.1  Score=35.63  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhh
Q 011118          329 IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       329 ~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~  408 (493)
                      -.++..+..+    ++.+..|.+.+++|..++..++..    +-.+-+++.+-+.    -+.+..+-++..+|--.+-.+
T Consensus        42 slai~Y~~~~----~s~l~~P~iv~~lg~K~sm~lg~~----~y~~y~~~~~~~~----~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   42 SLAILYGSFA----ISCLFAPSIVNKLGPKWSMILGSL----GYAIYIASFFYPN----SYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             HHHHHHHHHH----HHHHhHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHhhh----HHHHHHHHHHHhhhhHHhhHh
Confidence            4444444433    445678999999999888877765    3333333333332    233334444445554444567


Q ss_pred             hhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          409 VIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      +-.++-+..+++.++|-.|++-++.+.-
T Consensus       110 qg~ylt~~s~~~~~~~~~~ifw~i~~~s  137 (156)
T PF05978_consen  110 QGTYLTSYSTEETIGRNTGIFWAIFQSS  137 (156)
T ss_pred             hhHHHHHcCCHHHHhhHHHHHHHHHHHH
Confidence            7777778888999999888877776643

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR01272 gluP glucose/galactose transporter

Probab=89.87  E-value=24  Score=35.73  Aligned_cols=133  Identities=8%  Similarity=0.014  Sum_probs=69.2

Q ss_pred             HHHHHHHh--CCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Q 011118           40 VGLYMISV--WPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTN  117 (493)
Q Consensus        40 ~~L~lv~l--~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~  117 (493)
                      .+.++.+.  ++-+....+.+...-....++-....+.++||.+++|.++.+.+...+.       .++....   . ..
T Consensus       163 ~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~-------~~l~~~~---~-~~  231 (310)
T TIGR01272       163 LVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL-------SIGAALT---H-GY  231 (310)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHHHHHc---C-CH
Confidence            45555533  3446666666666666666666667778899999888887665333222       1111111   1 11


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhhhHHH
Q 011118          118 FIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVSLQAS  197 (493)
Q Consensus       118 ~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a  197 (493)
                      +..+. +.+   +.-+.+..+......+.++  .    +    ++-.+..+.+ ......-.++|.+.|.+.+..|...+
T Consensus       232 ~~~~~-~~l---~g~~~s~i~P~~~s~a~~~--~----~----~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a  296 (310)
T TIGR01272       232 VAMWF-VLA---LGLFNSIMFPTIFSLALNA--L----G----RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLA  296 (310)
T ss_pred             HHHHH-HHH---HHHHHHHHHHHHHHHHHhh--h----h----hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHH
Confidence            11211 111   1112233333332333111  1    1    1212233333 56777888999999999998887666


Q ss_pred             H
Q 011118          198 A  198 (493)
Q Consensus       198 ~  198 (493)
                      .
T Consensus       297 ~  297 (310)
T TIGR01272       297 F  297 (310)
T ss_pred             H
Confidence            5

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=88.90  E-value=13  Score=40.52  Aligned_cols=81  Identities=12%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             hchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011118          399 RLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRI  478 (493)
Q Consensus       399 R~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~  478 (493)
                      ..+.=.-|....++--|...+..+|.+.|+...-.+..++..-+.....-.-...++++.+....++.+..+.....+|.
T Consensus       399 g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r~  478 (488)
T KOG2325|consen  399 GIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKRL  478 (488)
T ss_pred             ccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333446667788888889999999999887777777655544444444445566777777777776666666665554


Q ss_pred             h
Q 011118          479 R  479 (493)
Q Consensus       479 R  479 (493)
                      +
T Consensus       479 ~  479 (488)
T KOG2325|consen  479 V  479 (488)
T ss_pred             c
Confidence            3

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=88.36  E-value=21  Score=33.45  Aligned_cols=71  Identities=20%  Similarity=0.100  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHH
Q 011118           22 LYVAHFLARWGARMWEFSVGLYMISVWPDSL-LFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVT   92 (493)
Q Consensus        22 L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sl-l~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~   92 (493)
                      +..+.+.+..+...+....+.+......... ...+.......+...+..+..|.+.||++||+.+......
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   78 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL   78 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence            6677777778888999999997776654432 3455566666666666679999999999888666665543

>TIGR00788 fbt folate/biopterin transporter

Probab=87.81  E-value=21  Score=38.50  Aligned_cols=129  Identities=7%  Similarity=-0.059  Sum_probs=75.2

Q ss_pred             HHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhch---hhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHH
Q 011118          315 LMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRIST---LRTGLWSIWSQWFCLLICVASIWI-HNSLVAAY  389 (493)
Q Consensus       315 l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl---~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~  389 (493)
                      ....|+++ +|++++++|.+.+.-.+.-.+--+ .+++..|+++   .|-.  .+..+++........... +.+.... 
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~--~l~~~~~l~~~~~~~~l~~~~~~~~~-  122 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRW--YLVLSGLLGSAILYGLLPGKVSSAKV-  122 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchH--HHHHHHHHHHHHHHHhcccccchHHH-
Confidence            44556664 799999999999998888777666 8888888863   1222  222222111111111112 1121111 


Q ss_pred             HHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHH----HHHhhHHHHHHHHHhccC
Q 011118          390 MLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNS----LQSTMDLMAYTMGIIISN  449 (493)
Q Consensus       390 ~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~s----l~~~f~l~~~~~~ii~~~  449 (493)
                       ......+..++--..|++...++=|..+ ++++..++.|..    .+.++-++.++.+.+...
T Consensus       123 -~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       123 -AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             -HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1223445557777889999999988888 555555555532    223446666677766654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.74  E-value=6.7  Score=40.20  Aligned_cols=167  Identities=17%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             CCCcccccCCCcchhh-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeee
Q 011118            3 SEPLIVQEQPAITSFL-----TTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWV   77 (493)
Q Consensus         3 ~~~~~~~~~~~~~~~~-----~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~v   77 (493)
                      .|+-.-||+|++..++     |+.+..-+.+=-..--=+-=.-|.|...-|.-|....+-.-........+.+|..|..+
T Consensus       245 ~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~  324 (459)
T KOG4686|consen  245 LEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAIS  324 (459)
T ss_pred             hhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhH
Confidence            4566778888876643     44444444332221111111234555666666666555555556667778899999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCC
Q 011118           78 DKLTYVKVLQIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEG  157 (493)
Q Consensus        78 Dr~~R~~v~~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~  157 (493)
                      |+++|+-....+-..-.+.   +=..    +.++  ..+.|....       ++|-...+-..+.--.     |+.++.+
T Consensus       325 Dk~G~n~~wv~~a~~~tl~---~H~~----l~Ft--~lsPy~~m~-------~lGLsysllAcslWP~-----va~~vpE  383 (459)
T KOG4686|consen  325 DKYGFNLWWVASACILTLL---GHSG----LFFT--FLSPYTSMT-------FLGLSYSLLACSLWPC-----VASLVPE  383 (459)
T ss_pred             hhhcceehhHHHHHHHHHH---Hhhh----HHhh--hccHHHHHH-------HHhhhHHHHHHHHhhh-----hhhhCCH
Confidence            9999886654442111110   1000    0010  111221111       1122222222222223     4555553


Q ss_pred             CChhhhhhhhhHHHhHHHHHHhhhhHHHHHHHHhhh
Q 011118          158 HPPEALTKMNSIIRRIDLTCKLLAPAITGFIISFVS  193 (493)
Q Consensus       158 ~~~~~L~~~Na~mrriDl~~~l~gP~~~G~l~~~~s  193 (493)
                         ++|-.+-..|+.|....--..|+++|++.+.-|
T Consensus       384 ---~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  384 ---EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             ---HHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence               799999999999999999999999999988654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=86.12  E-value=40  Score=35.59  Aligned_cols=171  Identities=16%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeeccc--chhHHHHHHHH--H
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKL--TYVKVLQIWLV--T   92 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~--~R~~v~~~~~~--~   92 (493)
                      |....|.++-+.-..---.+|.+..-...++.+++.+..|+     -++.-+++.=.|.|+-|+  +-....+..++  .
T Consensus         7 ~~~alL~laVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~-----Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vEll   81 (508)
T COG4262           7 RWRALLLLAVFVCAACGLVYELALGTLATYLLGGGILQTSL-----IIAGYLAAMGLGSLLSRYVLDDAALARFVDVELL   81 (508)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCceeehHH-----HHHHHHHHhchhhhhhccccCchHHHHHHHHHHH
Confidence            45556666777777777899999999999999887766554     445556666677787777  33333323321  2


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhH---
Q 011118           93 QNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSI---  169 (493)
Q Consensus        93 q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~---  169 (493)
                      -.+..+.|+.++++.+..     .+-+...++++.+   ..++.+-+.=         +         .-+.+||-+   
T Consensus        82 lgligg~Sa~~ly~~FA~-----~~~~~~~Vly~lt---~vIG~LVG~E---------i---------PL~mrml~~r~a  135 (508)
T COG4262          82 LGLIGGVSAAALYLLFAL-----ESAPSRLVLYALT---AVIGVLVGAE---------I---------PLLMRMLQRRQA  135 (508)
T ss_pred             HHHhccchHHHHHHHHHh-----ccchHHHHHHHHH---HHHHHHHhcc---------h---------HHHHHHHHHHHH
Confidence            223334555553322211     1111222233222   2233332211         1         122233322   


Q ss_pred             -----HHhHHHHHHhhhhHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011118          170 -----IRRIDLTCKLLAPAITGFIIS-----FVSLQASAMTLAIWTTVTVWVEYWLFMSV  219 (493)
Q Consensus       170 -----mrriDl~~~l~gP~~~G~l~~-----~~s~~~a~~~i~~~n~~S~~ve~~~l~~V  219 (493)
                           -++.- .-+-+|.+.+|++..     ..|..-++...+..|.++-++..++++++
T Consensus       136 ~~k~~~s~vl-~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv~~fllr~v  194 (508)
T COG4262         136 KAKDLGSRVL-TLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVTLFLLRHV  194 (508)
T ss_pred             HHHhhhhhhh-hhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11111 114456666676654     36777777888899999999998888877

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=85.80  E-value=8.9  Score=41.04  Aligned_cols=158  Identities=17%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGAR-MWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr-~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      +..++..+.++=+=|-. +..++ ..|.+..++=|-..+.+++...++..++.+...|.+-||.+-|+++...+      
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~-~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l------  325 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMG-GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL------  325 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHH-HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH------
Confidence            34444444444333322 23333 34456677778899999999999999999999998888887777766655      


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      +..+.++++..+..   ...+...+++++  ....|         -.-+..|-+...++.+++   =.+.=....-.+..
T Consensus       326 vi~~~~~~~~~~~~---~~~~f~i~gll~--g~s~G---------~~qA~SRSy~~~lvp~~k---~~~fFglyaltgra  388 (438)
T COG2270         326 VILSIAALYLIFLE---GELDFWILGLLV--GTSLG---------GAQASSRSYLARLVPKGK---EGRFFGLYALTGRA  388 (438)
T ss_pred             HHHHHHHHHHHHcc---ccHHHHHHHHHH--HHhcc---------hHHHHHHHHHHHhCCCcc---ccceeehhhhhhhH
Confidence            22333332332221   222222222222  11122         223335666777777654   24444455667889


Q ss_pred             HHhhhhHHHHHHHHhhh-hHHHHH
Q 011118          177 CKLLAPAITGFIISFVS-LQASAM  199 (493)
Q Consensus       177 ~~l~gP~~~G~l~~~~s-~~~a~~  199 (493)
                      +.++||.++|.+.+..| .+.+..
T Consensus       389 ~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         389 ASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHH
Confidence            99999999999988654 344443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=85.64  E-value=60  Score=35.45  Aligned_cols=187  Identities=10%  Similarity=0.052  Sum_probs=98.0

Q ss_pred             ccccceeeecccchHHHHHHHHHHHHhhh-hhhHHHHHHHHcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011118          283 CVGAWQVYLKQEVVLPGVSLALLFFTVLS-FGTLMTATLEWEGIPAY----IIGIARGISATIGIAATILYPILQSRIST  357 (493)
Q Consensus       283 ~~~g~~~y~~q~v~la~~alalLy~tVL~-f~~l~~~yl~~~gls~~----~iG~~r~~~av~GllgT~~~~~l~~riGl  357 (493)
                      +.||++..++.|.++....+.++|..+-. ....--..++++--++.    ..|-+-..-.+.-+.--+..+++.||+|.
T Consensus       253 ~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw  332 (472)
T TIGR00769       253 TMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGW  332 (472)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            57899999999999998888888843322 33334444454443433    33443333222333334455999999998


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH---hhcc-----------hHHHHHHHHH--HHHhhhchhhhh-hhhhhhhhhccCCCC
Q 011118          358 LRTGLWSIWSQWFCLLICVASI---WIHN-----------SLVAAYMLMV--GVATSRLGLWMF-DLSVIQQMQDLVPES  420 (493)
Q Consensus       358 ~r~g~~~~~~q~~~L~~~v~~~---~~~~-----------~~~s~~~l~~--gi~~SR~GLw~f-Dl~~~~l~Qe~vp~~  420 (493)
                      .-+..+...   +++..++..+   ..+.           .+.....+++  -.+++|.+=+++ |.+- ++.=.-+|++
T Consensus       333 ~~~a~i~Pi---i~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~k-Emly~pld~e  408 (472)
T TIGR00769       333 LTAALITPL---VMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATK-EMAYIPLDEE  408 (472)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHH-HHhcccCCHH
Confidence            766654443   2222211111   0010           1112233333  455677765543 5544 4444457888


Q ss_pred             cchhHHHHHHHHHHhh--HHHHHHHHH---hccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011118          421 DRCVVGGVQNSLQSTM--DLMAYTMGI---IISNPQDFWKLILISVIVVTLAAILYTFH  474 (493)
Q Consensus       421 ~rG~v~gv~~sl~~~f--~l~~~~~~i---i~~~p~~F~~l~~~S~~~V~~~~~l~~~~  474 (493)
                      +|.+.=++...+.+=.  ..++.+-..   .+..- ......+..+..+.+..|++...
T Consensus       409 ~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~~~~~~~-~~~~~~~~~i~~~i~~~Wi~~v~  466 (472)
T TIGR00769       409 QKVKGKAAIDVVAARLGKSGGALIQQGLLVIFGSL-AASTPYLAVILLIIVTAWLAAAK  466 (472)
T ss_pred             HHHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888777766665533  223332221   11111 13445555555566556666544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=84.71  E-value=16  Score=39.49  Aligned_cols=112  Identities=10%  Similarity=0.053  Sum_probs=73.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHhhhchh
Q 011118          324 GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN-SLVAAYMLMVGVATSRLGL  402 (493)
Q Consensus       324 gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~-~~~s~~~l~~gi~~SR~GL  402 (493)
                      +.+.....+..++--+|-++|+++++.+..|+|-.++-+++...+.+|-.++   .+++. ....+.=++.|+..+..  
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~---a~a~~~~~~~~~Rfl~G~~~~~~--  188 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT---AFAPNYWMFLIFRFLSGFFGSGP--  188 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHhhccch--
Confidence            4456666666777777888999999999999998888888887555544332   22321 12233334444444333  


Q ss_pred             hhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHH
Q 011118          403 WMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMG  444 (493)
Q Consensus       403 w~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~  444 (493)
                         ..+...++=|.+++++|+.+... .......++....++
T Consensus       189 ---~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~  226 (521)
T KOG0255|consen  189 ---LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGA  226 (521)
T ss_pred             ---hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHH
Confidence               45555666799999999999999 666666644444444

>PTZ00207 hypothetical protein; Provisional

Probab=84.53  E-value=66  Score=36.14  Aligned_cols=150  Identities=9%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHH
Q 011118           21 YLYVAHFLARWGAR--MWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFI   98 (493)
Q Consensus        21 ~L~~s~~lS~~Gdr--~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~   98 (493)
                      .+.++-.+.....-  .|....|-+ ..-++-|....+....+. .....+..+.|.+.||++||+++.++.+.-.+.  
T Consensus        29 ~lva~~~~~~~~g~~y~fsv~s~~L-~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG--  104 (591)
T PTZ00207         29 LLVLGAFCSICTSFMYAFNLISGAM-QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLG--  104 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--
Confidence            34444443333333  344444653 444554555555554432 233345667899999999999998886443333  


Q ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHH
Q 011118           99 VAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCK  178 (493)
Q Consensus        99 ~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~  178 (493)
                        +.. .. +..+.....+...+.+.   -.+.|..+..+.++....+. +|.|    ++|    ..+.+.+...--++.
T Consensus       105 --~ll-~a-la~~~~i~~s~~~l~l~---r~l~G~G~~~~~~~~~~~i~-~~Fp----~~R----G~a~Gi~~~~~gLGs  168 (591)
T PTZ00207        105 --TLL-FA-LTFQEVIEGSVVRLSVY---NGLMTLGCMLFDLGAVVTVL-SVFP----SNR----GAVVAIMKTFTGLGS  168 (591)
T ss_pred             --HHH-HH-HHhcccccCcHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HhCh----hhh----HHHHHHHHHHHHHHH
Confidence              221 11 11101011121111111   12334444555555455543 3874    322    445555555544444


Q ss_pred             -hhhhHHHHHHHH
Q 011118          179 -LLAPAITGFIIS  190 (493)
Q Consensus       179 -l~gP~~~G~l~~  190 (493)
                       +.+|+..+++..
T Consensus       169 aI~~~l~~~l~~~  181 (591)
T PTZ00207        169 AILGSIQLAFFSD  181 (591)
T ss_pred             HHHHHHHHHHHHH
Confidence             467777766543

>PRK11462 putative transporter; Provisional

Probab=84.46  E-value=31  Score=37.00  Aligned_cols=118  Identities=12%  Similarity=0.104  Sum_probs=74.2

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhhhhHHHHHHHHHHHHHHHHHHh-hcc--hHHHH
Q 011118          316 MTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRI----STLRTGLWSIWSQWFCLLICVASIW-IHN--SLVAA  388 (493)
Q Consensus       316 ~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~ri----Gl~r~g~~~~~~q~~~L~~~v~~~~-~~~--~~~s~  388 (493)
                      ++-|....|+++..+|.+..++-+..-..--+.+.+..|.    |-.|-  |=++.- +.+..+....| .|.  .....
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp--~il~g~-i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRP--WVLFGA-LPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcch--hHhHHH-HHHHHHHHHHHhCCCCCcchHH
Confidence            3334345899999999999998888777777777776654    43332  212110 11222222233 331  11222


Q ss_pred             HHHHHHHHhhhchhhhhhhhhhhhhhccCC-CCcchhHHHHHHHHHHhh
Q 011118          389 YMLMVGVATSRLGLWMFDLSVIQQMQDLVP-ESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       389 ~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp-~~~rG~v~gv~~sl~~~f  436 (493)
                      .-++...++-+++...+|+.-..+.=|..+ ++||++.++......+..
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG  158 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAG  158 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            333444445588889999999999888885 779999999888777654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=84.06  E-value=0.046  Score=57.73  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhh
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMF  405 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~f  405 (493)
                      ++...+...+...++.++|+++++.+..|+|-.++-..+...   ....+++..+.+. ..+...+..+-.+..+|.=+.
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL---MIIGSILIAFAPS-YNNFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccc---ccccccccccccc-ccccccccccccccccccccc
Confidence            345678888888999999999999999999977766654431   1122222222221 123444555555555565566


Q ss_pred             hhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhccC
Q 011118          406 DLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIIISN  449 (493)
Q Consensus       406 Dl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~~~  449 (493)
                      ......+++|..|+++||+..+.+.....+-.+.....+.....
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc
Confidence            78888999999999999999887776665555555555544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=83.49  E-value=22  Score=40.43  Aligned_cols=52  Identities=10%  Similarity=0.084  Sum_probs=35.8

Q ss_pred             hhhHHHHHHHH-cCCCch----HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          312 FGTLMTATLEW-EGIPAY----IIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       312 f~~l~~~yl~~-~gls~~----~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      .-.+++.|+.+ .|+++.    ..+.+-+.+-+.+++|++++   -+++|-.|+..++..
T Consensus         6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iA---D~~lG~~~tIl~~~i   62 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIA---DGWLGKFKTILYLSI   62 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHH
Confidence            34566667663 677654    67777788888888888887   466777777666554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=83.01  E-value=1.5  Score=47.36  Aligned_cols=107  Identities=17%  Similarity=0.148  Sum_probs=76.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchh
Q 011118          323 EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGL  402 (493)
Q Consensus       323 ~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GL  402 (493)
                      -+++++..|++...=-+.=.++.-+++.|.+|++-.+....++.   ++..+..++-+. .-   .+.++..=.+-.+|.
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~---iW~~Av~~~~fs-~~---Fwq~~l~R~~vGiGe  135 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF---IWTLAVFASGFS-NH---FWQVLLCRGFVGIGE  135 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH---HHHHHHHHHHHH-HH---HHHHHHHHHHhccch
Confidence            68899999999998888888999999999999997665554443   122221121111 11   122223333446899


Q ss_pred             hhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh
Q 011118          403 WMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM  436 (493)
Q Consensus       403 w~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f  436 (493)
                      =+|....++++-+..|+++|+++.++.+---..-
T Consensus       136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG  169 (493)
T KOG1330|consen  136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG  169 (493)
T ss_pred             hhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence            9999999999999999999999999877655544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=82.25  E-value=6.4  Score=43.45  Aligned_cols=140  Identities=12%  Similarity=0.149  Sum_probs=93.6

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHH--HHHHhhcchHHHH--HH
Q 011118          315 LMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLIC--VASIWIHNSLVAA--YM  390 (493)
Q Consensus       315 l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~--v~~~~~~~~~~s~--~~  390 (493)
                      .|.=++++.|-.+..-|+.-..+=++++..=+...++.|++|-+|....++.    |...=  ..|.+-  .+|.+  .=
T Consensus       393 FLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa----~~~~Rf~~~S~L~--n~W~vLPie  466 (618)
T KOG3762|consen  393 FLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLA----CNVGRFLYYSYLQ--NPWMVLPIE  466 (618)
T ss_pred             HHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhh----HHHHHHHHHHHhc--CchheeeHH
Confidence            3555677788899999999999999999999999999999998876554432    22211  111111  11111  11


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh--HHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM--DLMAYTMGIIISNPQDFWKLILISVIVVT  465 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f--~l~~~~~~ii~~~p~~F~~l~~~S~~~V~  465 (493)
                      ++-|+...-  +|   -+..+++-...|++.|-.+.|+....-.+.  .+++++.|.+..+-+....-.+..+++++
T Consensus       467 ilqgit~al--iW---aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  467 ILQGITHAL--IW---AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             HHHHHHHHH--HH---HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            222222111  23   466677788899999988888777776666  89999999999886666666655555554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=81.71  E-value=76  Score=33.65  Aligned_cols=54  Identities=20%  Similarity=0.343  Sum_probs=45.5

Q ss_pred             HHHHhh-hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 011118          305 LFFTVL-SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTL  358 (493)
Q Consensus       305 Ly~tVL-~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~  358 (493)
                      +|+.+. .+-+.+..|+++.|+++.++|++.+++.+..+.+....+.+..|.+..
T Consensus        13 ~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~   67 (400)
T PF03825_consen   13 LYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA   67 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence            333443 366678899999999999999999999999999999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.78
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.68
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.53
2xut_A	524	Proton/peptide symporter family protein; transport	99.18
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.01
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.46
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.09
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.89
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.81
2xut_A	524	Proton/peptide symporter family protein; transport	97.71
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.21

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.78  E-value=3.2e-17  Score=169.29  Aligned_cols=387  Identities=8%  Similarity=-0.033  Sum_probs=235.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118           18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF   97 (493)
Q Consensus        18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v   97 (493)
                      .+..++.++++...+..++....|.+..+.  .|....+.......++.++.+++.|.+.||++||+++..+.+...+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~  106 (451)
T 1pw4_A           29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  106 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            345577778888888888888888866555  566778888888999999999999999999999999988875554442


Q ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118           98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC  177 (493)
Q Consensus        98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~  177 (493)
                      .    +  ..+.+..  ..++..+.+.   -.+.|.......++... .-.||.    ++   ++..+.++.......+.
T Consensus       107 ~----~--~~~~~~~--~~~~~~l~~~---~~l~G~~~~~~~~~~~~-~i~~~~----~~---~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A          107 L----F--MGFVPWA--TSSIAVMFVL---LFLCGWFQGMGWPPCGR-TMVHWW----SQ---KERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             H----H--HHHCHHH--HSSSSHHHHH---HHHHHHHHHHTHHHHHH-HHHTTC----TT---THHHHHHHHHHHHHHHH
T ss_pred             H----H--HHhhhhc--cccHHHHHHH---HHHHHHHhhhccchHHH-HHHHHC----Cc---hhhhHHHHHHHHHHHHH
Confidence            1    1  1110000  1111122221   12335555555544333 334554    33   56899999999999999


Q ss_pred             HhhhhHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118          178 KLLAPAITGFIISFVS-LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL  256 (493)
Q Consensus       178 ~l~gP~~~G~l~~~~s-~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      .++||.++|.+.+..| .+....+.++...+..+.-+    .   ..|+.+++.+..+    .++.++  +  .      
T Consensus       168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~----~~~~~~--~--~------  226 (451)
T 1pw4_A          168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF----A---MMRDTPQSCGLPP----IEEYKN--D--Y------  226 (451)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH----H---HCCCSSTTTCCCS----CTTTCC--C---------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----h---hccCCHhhcCCCC----hhhhcc--c--c------
Confidence            9999999999988887 66655444444444333221    1   2333221110000    000000  0  0      


Q ss_pred             ccccchhHHHHHHHHHHHHhhhcccccccc-ceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHH
Q 011118          257 SHDENNAELAEKRWRWKIIDWISNAPCVGA-WQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIA  333 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~  333 (493)
                      +++...... +    +        ...++. ++..+++|.++......+++ +...++......|+++ .|+++...|.+
T Consensus       227 ~~~~~~~~~-~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  293 (451)
T 1pw4_A          227 PDDYNEKAE-Q----E--------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA  293 (451)
T ss_dssp             -------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHH
T ss_pred             cccchhhhh-c----c--------cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            000000000 0    0        000111 34456777777666655555 3445677778888887 89999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh--chhhhhHHHHHHHHHHHHHHHHHHh-hcc-hHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118          334 RGISATIGIAATILYPILQSRI--STLRTGLWSIWSQWFCLLICVASIW-IHN-SLVAAYMLMVGVATSRLGLWMFDLSV  409 (493)
Q Consensus       334 r~~~av~GllgT~~~~~l~~ri--Gl~r~g~~~~~~q~~~L~~~v~~~~-~~~-~~~s~~~l~~gi~~SR~GLw~fDl~~  409 (493)
                      .+...+++++|.++.+++.+|+  |..+.-.++..   ++...+..... .+. +.+   .+.....+..++........
T Consensus       294 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~  367 (451)
T 1pw4_A          294 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM---TLVTIATIVYWMNPAGNPT---VDMICMIVIGFLIYGPVMLI  367 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH---HHHHHHHHHTTSCCTTCHH---HHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH---HHHHHHHHHHHHhcccCHH---HHHHHHHHHHHHHhchHHHH
Confidence            9999999999999999999999  86655443332   11112222222 221 222   22223333345556667777


Q ss_pred             hhhhhccCCCCcchhHHHHHHHHHHh-h-HHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 011118          410 IQQMQDLVPESDRCVVGGVQNSLQST-M-DLMAYTMGIIISNPQDFWKLILISVIVVT  465 (493)
Q Consensus       410 ~~l~Qe~vp~~~rG~v~gv~~sl~~~-f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~  465 (493)
                      ..+.+|.+|+++||++.|+.++..++ . -++.++.+.+...-+......+.....+.
T Consensus       368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  425 (451)
T 1pw4_A          368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  425 (451)
T ss_dssp             HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            88999999999999999999999998 6 67788888887765533333333333333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.68  E-value=3.3e-14  Score=146.30  Aligned_cols=359  Identities=10%  Similarity=0.002  Sum_probs=219.5

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118           17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS   96 (493)
Q Consensus        17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~   96 (493)
                      +.+..++...++......++....|.+ .+-++-|....+.......+..++.+++.|.+.||++||+++..+.+.-.+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~  104 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence            345566777788888888899999985 4556778889999999999999999999999999999999998887554443


Q ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118           97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT  176 (493)
Q Consensus        97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~  176 (493)
                      .    .+... ..    ...++..+.+.   -.+.|.......++.. +.-.||.    ++   ++..+.++..+....+
T Consensus       105 ~----~~~~~-~~----~~~~~~~l~~~---~~l~G~~~~~~~~~~~-~~~~~~~----~~---~~r~~~~~~~~~~~~~  164 (438)
T 3o7q_A          105 A----ALFWP-AA----EIMNYTLFLVG---LFIIAAGLGCLETAAN-PFVTVLG----PE---SSGHFRLNLAQTFNSF  164 (438)
T ss_dssp             H----HHHHH-HH----HTTCHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHSS----CS---TTHHHHHHHHHHHHHH
T ss_pred             H----HHHHh-cc----ccccHHHHHHH---HHHHHhhHHHhhhhHH-HHHHHHc----Cc---hhHHHHHHHHHHHHHH
Confidence            1    11000 01    11122222221   1233544555554433 3334554    33   4577889999999999


Q ss_pred             HHhhhhHHHHHHH-Hhhh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhh
Q 011118          177 CKLLAPAITGFII-SFVS-------------------------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESS  230 (493)
Q Consensus       177 ~~l~gP~~~G~l~-~~~s-------------------------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~  230 (493)
                      +.++||.+++.+. ...+                         .+.......+...+..    .+.  .+.+.|+.+++ 
T Consensus       165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~--~~~~~p~~~~~-  237 (438)
T 3o7q_A          165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA----LLI--MLTKFPALQSD-  237 (438)
T ss_dssp             HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHCCCCCCTTT-
T ss_pred             HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH----HHH--HHHcCCccccc-
Confidence            9999999999998 5443                         2333322222222111    111  12234432210 


Q ss_pred             hhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHH-h
Q 011118          231 QRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT-V  309 (493)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~t-V  309 (493)
                        +     +++ ++                ...                   ..+.++..+++|.++..+....+++. .
T Consensus       238 --~-----~~~-~~----------------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (438)
T 3o7q_A          238 --N-----HSD-AK----------------QGS-------------------FSASLSRLARIRHWRWAVLAQFCYVGAQ  274 (438)
T ss_dssp             --C-----CCC-SS----------------TTS-------------------HHHHHHHHTTCSHHHHHHHHHHHHHHHH
T ss_pred             --c-----ccc-cc----------------ccc-------------------hhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence              0     000 00                000                   01222334566766666655555543 3


Q ss_pred             hhhhhHHHHH-HHHc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHH
Q 011118          310 LSFGTLMTAT-LEWE-GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVA  387 (493)
Q Consensus       310 L~f~~l~~~y-l~~~-gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s  387 (493)
                      .++...+..| +++. |+++...|.+.+...+++++|.++.+++.+|+|..|...++...   +........+.+.....
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  351 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI---AMALCLISAFAGGHVGL  351 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH---HHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHcCCcHHH
Confidence            4566778888 8875 99999999999999999999999999999999987766655542   22222222233322222


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHH
Q 011118          388 AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKL  456 (493)
Q Consensus       388 ~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l  456 (493)
                      ...++.|     ++.-........+.+|..|++ +++..+... .+.+. -++.++.+.+....+.+...
T Consensus       352 ~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~  414 (438)
T 3o7q_A          352 IALTLCS-----AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA  414 (438)
T ss_dssp             HHHHHHH-----HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            2222223     333334567777888888877 888888766 55544 67777778777665533333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.57  E-value=1.8e-12  Score=135.97  Aligned_cols=396  Identities=13%  Similarity=0.021  Sum_probs=213.1

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHHHhhhccceeeecc-cchhHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISV-----WPDSLLFAAIYGAVESASIALFGPIVGHWVDK-LTYVKVLQI   88 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l-----~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr-~~R~~v~~~   88 (493)
                      +.+.++.++...++..++-.......+.++.+.     ++-|....+.......+...+..++.|.+.|| ++||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            445788999999999999988888889988887     88899999999999999999999999999999 899999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhh
Q 011118           89 WLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNS  168 (493)
Q Consensus        89 ~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na  168 (493)
                      +.+...+.    +.   ++..    ....+..+...+    +.|.......++ ..+.-.||.    ++++ .......+
T Consensus        91 ~~~~~~~~----~~---~~~~----~~~~~~~~~~~~----l~g~~~~~~~~~-~~~~~~~~~----~~~~-~~r~~~~~  149 (491)
T 4aps_A           91 GGVLIMLG----HI---VLAL----PFGASALFGSII----LIIIGTGFLKPN-VSTLVGTLY----DEHD-RRRDAGFS  149 (491)
T ss_dssp             HHHHHHHH----HH---HHHS----CCSTTHHHHHHH----HHHHHHHHHHHH-HHHHHHHHS----SSCT-THHHHHHH
T ss_pred             HHHHHHHH----HH---HHHH----hhhHHHHHHHHH----HHHHHHHhccch-HHHHHHHHc----Cccc-ccceeeeh
Confidence            86444333    11   1111    111122221111    234444444434 233334554    3333 34667777


Q ss_pred             HHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhhhhhhhccCCCcccccccC
Q 011118          169 IIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGI-PALAESSQRRIRRSMPIDMEQSTS  247 (493)
Q Consensus       169 ~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~-p~L~~~~~~~~~~~~~~~~~~~~~  247 (493)
                      .......+..++||.++|.+.+..|.+......++...++.+.-    ....++. |+-.    +     ++++ +.   
T Consensus       150 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~----~~~~~~~~~~~~----~-----~~~~-~~---  212 (491)
T 4aps_A          150 IFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY----YFGGKKTLDPHY----L-----RPTD-PL---  212 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHHHHTTCCSCC----S-----CCSC-CC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHhCcccccccc----c-----CCCC-cc---
Confidence            78888899999999999999998887776654444444433331    1111111 1100    0     0000 00   


Q ss_pred             Ccccccc--------------------ccccccchhHHHH---HHHHH--HHHhhhccccccccceeeecccchHHHHHH
Q 011118          248 MPRERES--------------------LLSHDENNAELAE---KRWRW--KIIDWISNAPCVGAWQVYLKQEVVLPGVSL  302 (493)
Q Consensus       248 ~~~~~~~--------------------~~~~~~~~~~~~~---~~~~~--~~~~~l~~~~~~~g~~~y~~q~v~la~~al  302 (493)
                      +.++..+                    ..+..+.......   .....  ....+..+. .....+...+...+.+.+..
T Consensus       213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  291 (491)
T 4aps_A          213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIA  291 (491)
T ss_dssp             SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHH
Confidence            0000000                    0000000000000   00000  000000000 00011111122233333433


Q ss_pred             HHHHH-HhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH-----HHHHHHHHHHHH-
Q 011118          303 ALLFF-TVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL-----WSIWSQWFCLLI-  374 (493)
Q Consensus       303 alLy~-tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~-----~~~~~q~~~L~~-  374 (493)
                      ..++. ........++.|..+ .+.+....|.+.+..+++.+.+..+.+++.+|+|-.+...     ++.....++... 
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~  371 (491)
T 4aps_A          292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM  371 (491)
T ss_dssp             HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence            44433 333455667778875 6777566677777777788888889999999988432211     222211111100 


Q ss_pred             HHHHHhhc-chHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118          375 CVASIWIH-NSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN  449 (493)
Q Consensus       375 ~v~~~~~~-~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~  449 (493)
                      .......+ ....+...+..+.++..+|.-.+......+.+|..|+++||++.|+.+..+++. -++.++.+.+...
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          372 AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            00000000 011112222233344445555556777889999999999999999999888887 5666666666543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.53  E-value=6.3e-15  Score=149.22  Aligned_cols=343  Identities=13%  Similarity=0.079  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHH
Q 011118           20 TYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIV   99 (493)
Q Consensus        20 ~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~   99 (493)
                      ..++.+.+++.++..++....|.+. +-++.|....+.......+..++.+++.|.+.||++||+++..+.+...+... 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL-   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-
Confidence            4577889999999999999999854 45666788899999999999999999999999999999999888755444311 


Q ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHh
Q 011118          100 AGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKL  179 (493)
Q Consensus       100 s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l  179 (493)
                         .  ....      .+...   +++...+.|.......++.... -.||.    ++   ++..+.++..+.......+
T Consensus        81 ---~--~~~~------~~~~~---l~~~~~l~g~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~g~~  138 (375)
T 2gfp_A           81 ---V--AVTT------SSLTV---LIAASAMQGMGTGVGGVMARTL-PRDLY----ER---TQLRHANSLLNMGILVSPL  138 (375)
T ss_dssp             ---H--HHHH------HHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHH----HT---SSCCSHHHHHHHHHHHHHH
T ss_pred             ---H--HHHh------ccHHH---HHHHHHHHHHHHHhhhhhHHHH-HHHHC----CH---HHHHHHHHHHHHHHHHHHH
Confidence               1  1111      11112   2222223444455454443333 34444    33   3568889999999999999


Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccc
Q 011118          180 LAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHD  259 (493)
Q Consensus       180 ~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (493)
                      +||.++|.+.+..|.+....+..+...+..+.       ++...||.+++   +         ++.    +         
T Consensus       139 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~---------~~~----~---------  186 (375)
T 2gfp_A          139 LAPLIGGLLDTMWNWRACYLFLLVLCAGVTFS-------MARWMPETRPV---D---------APR----T---------  186 (375)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC-------CCCSSCCCSTT---T---------CCC----C---------
T ss_pred             hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-------HHHHCcccCCC---C---------ccc----c---------
Confidence            99999999988777766654333333222211       11123331100   0         000    0         


Q ss_pred             cchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHH
Q 011118          260 ENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGIS  337 (493)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~  337 (493)
                             +               ..++++..+++|.++.......++ +...++....+.|+++ .|+++...|.+.+..
T Consensus       187 -------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  244 (375)
T 2gfp_A          187 -------R---------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILP  244 (375)
T ss_dssp             -------C---------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTH
T ss_pred             -------c---------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                   0               123344445666555554444443 3344555666667775 799999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhcc
Q 011118          338 ATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDL  416 (493)
Q Consensus       338 av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~  416 (493)
                      .++++++.++.+++.+|.|. + ...+..   .+...+...... ..+..+...+..+.++..+|.-........+.||.
T Consensus       245 ~~~~~~~~~~~~~l~~r~~~-~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  319 (375)
T 2gfp_A          245 IPAAFFGAWFAGRPNKRFST-L-MWQSVI---CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP  319 (375)
T ss_dssp             HHHHHHHHHHHHTTTTHHHH-H-HHHHHH---HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-H-HHHHHH---HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            99999999999999999985 2 111111   001111110000 00011223333344444466666788889999999


Q ss_pred             CCCCcchhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118          417 VPESDRCVVGGVQNSLQSTM-DLMAYTMGII  446 (493)
Q Consensus       417 vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii  446 (493)
                      +| ++||+++|+.++.+++. -++.++.+.+
T Consensus       320 ~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          320 FP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             CC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 78999999999887766 4444444444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.18  E-value=5.1e-10  Score=118.29  Aligned_cols=167  Identities=6%  Similarity=-0.110  Sum_probs=109.5

Q ss_pred             cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHHHHhhhccceeeeccc-chhHHH
Q 011118           14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWP------DSLLFAAIYGAVESASIALFGPIVGHWVDKL-TYVKVL   86 (493)
Q Consensus        14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~------~sll~~sv~gl~~~l~~llfg~~vG~~vDr~-~R~~v~   86 (493)
                      ...+.++.++...++..++.-......|.++.+.++      -|....+.......+..++.+++.|.+.||+ +||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            344578889999999999998888888988888776      6777888888889999999999999999999 999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhh
Q 011118           87 QIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKM  166 (493)
Q Consensus        87 ~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~  166 (493)
                      ..+.+...+.    ..   ++..    ...+...+.+.   ..+.|.......++.. +.-.||.    ++++.......
T Consensus        89 ~~~~~~~~~~----~~---~~~~----~~~~~~~~~~~---~~l~g~~~~~~~~~~~-~~~~~~~----~~~~r~~~~~~  149 (524)
T 2xut_A           89 LWLSLIYCVG----HA---FLAI----FEHSVQGFYTG---LFLIALGSGGIKPLVS-SFMGDQF----DQSNKSLAQKA  149 (524)
T ss_dssp             HHHHHHHHHH----HH---HHHH----TSSCHHHHHHH---HHHHHHHHHTTHHHHH-HHHHHTC----STTTTTHHHHH
T ss_pred             HHHHHHHHHH----HH---HHHH----hcccHHHHHHH---HHHHHHhccccchhHH-HHHHHHc----CccchHHHHHH
Confidence            7776433332    11   1111    11122121111   1233444455444433 3334454    33221233445


Q ss_pred             hhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHH
Q 011118          167 NSIIRRIDLTCKLLAPAITGFIISFVSLQASAM  199 (493)
Q Consensus       167 Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~  199 (493)
                      .+.......+...+||.++|.+.+..|.+....
T Consensus       150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~  182 (524)
T 2xut_A          150 FDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG  182 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            555777788899999999999998778766553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.01  E-value=3.2e-10  Score=117.40  Aligned_cols=362  Identities=11%  Similarity=-0.003  Sum_probs=176.2

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQN   94 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~   94 (493)
                      .+|.++.+....++...+--+..--.|.++...++-|....+.......+..++.++..|.+.||++|||++..+...-.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            45677777777777777766666667887776666666777888888888899999999999999999999877664432


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHH
Q 011118           95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID  174 (493)
Q Consensus        95 ~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriD  174 (493)
                      +...   .. ..............   ....    +.+....+...+. ...-.+|++...     ++-....+..+...
T Consensus        85 ~~~~---~~-~~~~~~~~~~~~~~---~~~~----~~~~~~g~~~~~~-~~~~~~~~~~~~-----~~~~~~~g~~~~~~  147 (417)
T 2cfq_A           85 VMFA---PF-FIFIFGPLLQYNIL---VGSI----VGGIYLGFCFNAG-APAVEAFIEKVS-----RRSNFEFGRARMFG  147 (417)
T ss_dssp             SCHH---HH-HHHTHHHHHHTTCC---HHHH----GGGSSTTHHHHTT-HHHHHHHHHHHH-----HHHTCCHHHHSSST
T ss_pred             HHHH---HH-HHHHHHHHHHHHHH---HHHH----HHHHHHHHHHhhh-HHHHHHHHHHhh-----hhcccchHHHHHHH
Confidence            2110   00 00000000000000   0000    0010001111111 111122321110     11111223333344


Q ss_pred             HHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          175 LTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       175 l~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      ...-.++|.++|.+.+. +.+....+..+...+..    .   -.+...|+..++  .+     .++.++.         
T Consensus       148 ~~g~~~~~~l~~~l~~~-~~~~~f~~~~~~~~~~~----~---~~~~~~~~~~~~--~~-----~~~~~~~---------  203 (417)
T 2cfq_A          148 CVGWALGASIVGIMFTI-NNQFVFWLGSGCALILA----V---LLFFAKTDAPSS--AT-----VANAVGA---------  203 (417)
T ss_dssp             TTHHHHHHHHHHHHHHH-CSHHHHTTTTTTTTTHH----H---HSCSSCCCCSCS--SC-----SSSSSSS---------
T ss_pred             HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH----H---HHHHcCcccccc--cc-----ccccccc---------
Confidence            56678899999998763 44333221111111111    1   111122221100  00     0000000         


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHH-cC---CCchH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEW-EG---IPAYI  329 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~-~g---ls~~~  329 (493)
                         +++...   .                 +.++..+++|.++.......++. ....+...+..|+.+ .+   .++..
T Consensus       204 ---~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (417)
T 2cfq_A          204 ---NHSAFS---L-----------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV  260 (417)
T ss_dssp             ---CCCCCC---H-----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHH
T ss_pred             ---cccccc---H-----------------HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhH
Confidence               000000   0                 01112234555443333322222 112233345566654 22   34567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhhhhhh
Q 011118          330 IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWMFDLS  408 (493)
Q Consensus       330 iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~fDl~  408 (493)
                      +|.+.++.+++++.+.++.+++.+|+|..|....+...    ...+.... +.+ +.+...+   ...+.-++.-.+...
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~~~~~  332 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI----MSVRIIGSSFAT-SALEVVI---LKTLHMFEVPFLLVG  332 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHTTCC-SHHHHHH---HTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH----HHHHHHHHHHhc-cHHHHHH---HHHHHHHHHHHHHHH
Confidence            78999999999999999999999999977765544431    11111111 122 2222111   111111222223344


Q ss_pred             hhhhhhccCCCCcchhHHHH-HHHHHHhh-HHHHHHHHHhcc
Q 011118          409 VIQQMQDLVPESDRCVVGGV-QNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       409 ~~~l~Qe~vp~~~rG~v~gv-~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      ...+..|..|++.||+..|. .++.+++. -++.++.+.+..
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            56789999999999998887 45555554 456666666654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.46  E-value=6.7e-05  Score=77.91  Aligned_cols=115  Identities=11%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhh
Q 011118          320 LEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATS  398 (493)
Q Consensus       320 l~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~S  398 (493)
                      ....|.+.......-...++.++.+++++.++.+|+|-.+...++.....+++......... .........++......
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  383 (491)
T 4gc0_A          304 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF  383 (491)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            33578888877777778888999999999999999998777666655333333222111211 11222222222222211


Q ss_pred             hchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          399 RLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       399 R~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      -.|   +......+..|..|.+.|+...|+-.+.+++..
T Consensus       384 ~~~---~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~  419 (491)
T 4gc0_A          384 AMS---WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLAN  419 (491)
T ss_dssp             HTT---TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHH
T ss_pred             HhH---HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence            222   233445677899999999999999998888773

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.09  E-value=0.00014  Score=74.15  Aligned_cols=136  Identities=14%  Similarity=0.024  Sum_probs=98.5

Q ss_pred             hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118          312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML  391 (493)
Q Consensus       312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l  391 (493)
                      ++..+..+.++.|+++.++|++.++..++..++....+++.+|+|..|...++.....+.........+.+    +...+
T Consensus        45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~l  120 (438)
T 3o7q_A           45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM----NYTLF  120 (438)
T ss_dssp             HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc----cHHHH
Confidence            44456666668999999999999999999999999999999999988887776653222111111102222    23344


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc-cCCC
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII-SNPQ  451 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~-~~p~  451 (493)
                      +.+-++..+|.-.++.....++.|..|+++||+..|...+..++. -++..+.+.+. +..+
T Consensus       121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            455556667777889999999999999999999999998888887 45555555555 4443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.89  E-value=0.00044  Score=71.76  Aligned_cols=135  Identities=13%  Similarity=0.033  Sum_probs=94.4

Q ss_pred             HHhhhhhhHHHHHHHH------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhhhHHHHHHHHHHHHHHHHHH
Q 011118          307 FTVLSFGTLMTATLEW------EGIPAYIIGIARGISATIGIAATILYPILQSR-ISTLRTGLWSIWSQWFCLLICVASI  379 (493)
Q Consensus       307 ~tVL~f~~l~~~yl~~------~gls~~~iG~~r~~~av~GllgT~~~~~l~~r-iGl~r~g~~~~~~q~~~L~~~v~~~  379 (493)
                      +...+....+..|+.+      .|+++...|.+.++..++..++..+++++.+| +|..|...++....   ....+...
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~---~~~~~~~~  103 (491)
T 4aps_A           27 FSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI---MLGHIVLA  103 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH---HHHHHHHH
Confidence            3344566678888885      79999999999999999999999999999999 89888877666422   22222222


Q ss_pred             hhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCc--chhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118          380 WIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESD--RCVVGGVQNSLQSTM-DLMAYTMGIIIS  448 (493)
Q Consensus       380 ~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~--rG~v~gv~~sl~~~f-~l~~~~~~ii~~  448 (493)
                      +.+ +   ...+..+.++..+|.-.+..+...++.|..|+++  ||...+..++..++. -++..+.+.+..
T Consensus       104 ~~~-~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  171 (491)
T 4aps_A          104 LPF-G---ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE  171 (491)
T ss_dssp             SCC-S---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhh-h---HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence            232 2   1223334444556666778899999999999999  666777666666665 445555666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.86  E-value=6.7e-05  Score=75.12  Aligned_cols=130  Identities=9%  Similarity=0.003  Sum_probs=95.8

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      .+...+..|.++.|.++.++|...++..++..++....+++.+|+|..|...++.....+.   .....+.+    +...
T Consensus        18 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---~~~~~~~~----~~~~   90 (375)
T 2gfp_A           18 IYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA---TLVAVTTS----SLTV   90 (375)
T ss_dssp             HHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH---HHHHHHHH----HHHH
T ss_pred             HHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH---HHHHHHhc----cHHH
Confidence            3555666677789999999999999999999999999999999999888877666522221   11212221    2334


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhc
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIII  447 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~  447 (493)
                      ++.+.++..+|.-.+......++.|..|+++|++.++......++.. ++..+.+.+.
T Consensus        91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44455555666667789999999999999999999999998888774 4444444444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.81  E-value=0.00015  Score=74.04  Aligned_cols=133  Identities=9%  Similarity=-0.100  Sum_probs=92.9

Q ss_pred             hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118          311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM  390 (493)
Q Consensus       311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~  390 (493)
                      .+...+..|..+. +++.++|++.++..++..++....+++.+|+|..|...++.....   ...++..+.+....+...
T Consensus        46 ~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~  121 (451)
T 1pw4_A           46 NFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA---AVMLFMGFVPWATSSIAV  121 (451)
T ss_dssp             SHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HHHHHHHHCHHHHSSSSH
T ss_pred             HHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH---HHHHHHHhhhhccccHHH
Confidence            3555666666678 999999999999999999999999999999998887776665322   222222220000011223


Q ss_pred             HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118          391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~  447 (493)
                      ++.+-++..+|.-.+..+...++.|..|+++||+.+|...+..++. -++..+.+.+.
T Consensus       122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556666678899999999999999999999988887777 44444444443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.71  E-value=0.0005  Score=72.12  Aligned_cols=132  Identities=12%  Similarity=-0.015  Sum_probs=88.9

Q ss_pred             hhhhhHHHHHHHH-cC------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhhhHHHHHHHHHHHHHHHHHHhh
Q 011118          310 LSFGTLMTATLEW-EG------IPAYIIGIARGISATIGIAATILYPILQSRI-STLRTGLWSIWSQWFCLLICVASIWI  381 (493)
Q Consensus       310 L~f~~l~~~yl~~-~g------ls~~~iG~~r~~~av~GllgT~~~~~l~~ri-Gl~r~g~~~~~~q~~~L~~~v~~~~~  381 (493)
                      .+....+..|+.+ .|      +++...|.+.++..++.+++....+++.+|+ |..|...++...   +....+...+.
T Consensus        29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~---~~~~~~~~~~~  105 (524)
T 2xut_A           29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI---YCVGHAFLAIF  105 (524)
T ss_dssp             HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH---HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHh
Confidence            3455667778874 78      9999999999999999999999999999999 988877665542   22222222223


Q ss_pred             cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHH---HHHHHHhh-HHHHHHHHHhc
Q 011118          382 HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGV---QNSLQSTM-DLMAYTMGIII  447 (493)
Q Consensus       382 ~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv---~~sl~~~f-~l~~~~~~ii~  447 (493)
                      +.+.   ..++.+.++..+|.-.+..+...++.|..|+++||+..+.   ..+..++. -++..+.+.+.
T Consensus       106 ~~~~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  172 (524)
T 2xut_A          106 EHSV---QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL  172 (524)
T ss_dssp             SSCH---HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred             cccH---HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2122   2233334444555566788999999999999999887776   44444444 33344444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.72  E-value=0.015  Score=59.99  Aligned_cols=119  Identities=12%  Similarity=0.044  Sum_probs=85.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc--------------hHHHHHHH
Q 011118          326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN--------------SLVAAYML  391 (493)
Q Consensus       326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~--------------~~~s~~~l  391 (493)
                      ++...|++-+...++.++|+++++++..|+|-.++-.++....   ...++...+.+.              ...+...+
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~---~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l  129 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLF---FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF  129 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence            3457888888888999999999999999999888887776532   222222222110              11234455


Q ss_pred             HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhc
Q 011118          392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIII  447 (493)
Q Consensus       392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~  447 (493)
                      +.+=++..+|.-+.-.....++.|..|+++||+..+..........+..+..+...
T Consensus       130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            56666666777677788889999999999999999988877777666666666544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.21  E-value=0.011  Score=60.50  Aligned_cols=77  Identities=17%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             eecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          290 YLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       290 y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      ++++|.++......++|+.. ......+..|+.+ .|+++.+.|.+.+...++..++..+.+++..|+|-.|.-.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~   81 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            46777777665555555433 3345678889985 79999999999999999999999999999999998887765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.69
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.67
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.05
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.46

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.8e-15  Score=152.50  Aligned_cols=399  Identities=9%  Similarity=0.006  Sum_probs=219.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHH
Q 011118           24 VAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVS  103 (493)
Q Consensus        24 ~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~  103 (493)
                      .++++.......+.++.|. +.+ +.-|.-..+....+..+...+.+++.|.+.||++||+++..+.+...+...+.+  
T Consensus        32 ~~~~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~--  107 (447)
T d1pw4a_          32 FGYAAYYLVRKNFALAMPY-LVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG--  107 (447)
T ss_dssp             HHHHHHHHHHTSHHHHHHH-TTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc--
Confidence            3333333333456677775 344 456778889999999999999999999999999999999988765544422111  


Q ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhH
Q 011118          104 VITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPA  183 (493)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~  183 (493)
                          ..+.  ...+...+...   -.+.|.......++.. ++-.||.    ++   ++..+.++.+........+++|.
T Consensus       108 ----~~~~--~~~~~~~~~~~---~~~~g~~~~~~~~~~~-~~i~~~~----~~---~~r~~~~~~~~~~~~~g~~i~~~  170 (447)
T d1pw4a_         108 ----FVPW--ATSSIAVMFVL---LFLCGWFQGMGWPPCG-RTMVHWW----SQ---KERGGIVSVWNCAHNVGGGIPPL  170 (447)
T ss_dssp             ----HCHH--HHSSSSHHHHH---HHHHHHHHHHTHHHHH-HHHHTTC----TT---THHHHHHHHHHHHHHHHHTSHHH
T ss_pred             ----ccch--hhhhHHHHHHH---HHHHHHhhhhhhhHHH-HHHHHHH----Hh---hcccccccccccccchhhhhhhh
Confidence                1110  00111111111   1223444444433323 3334555    22   56789999999999999999999


Q ss_pred             HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccch
Q 011118          184 ITGFIISFVS-LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENN  262 (493)
Q Consensus       184 ~~G~l~~~~s-~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (493)
                      +++.+....+ .+....+......+..++    ...   ..++.+++.+....+    +.++  +.        +++...
T Consensus       171 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~----~~~~--~~--------~~~~~~  229 (447)
T d1pw4a_         171 LFLLGMAWFNDWHAALYMPAFCAILVALF----AFA---MMRDTPQSCGLPPIE----EYKN--DY--------PDDYNE  229 (447)
T ss_dssp             HHHHHHHHTCCSTTCTHHHHHHHHHHHHH----HHH---HCCCSSTTTCCCSCT----TTCC--C---------------
T ss_pred             hhhhHhhhhhcccccchhhhhhHHHHHHH----HHH---hcccchhhcccchhh----hhhh--hc--------ccchhh
Confidence            9998877653 232222222222222221    111   122222111111000    0000  00        000000


Q ss_pred             hHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHH
Q 011118          263 AELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATI  340 (493)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~  340 (493)
                      ..  +    ++    ...  ....++..+++|.+.......+++ ....++......|+.+ .|+++...+...+...+.
T Consensus       230 ~~--~----~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (447)
T d1pw4a_         230 KA--E----QE----LTA--KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA  297 (447)
T ss_dssp             ----------------CC--THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred             cc--c----cc----cch--hhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhh
Confidence            00  0    00    000  012233445666665555544444 3334566677788885 799999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCC
Q 011118          341 GIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPE  419 (493)
Q Consensus       341 GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~  419 (493)
                      ++.|.++.+++.+|++-.+........- .....+...... +..  +........+...++..+.......+.+|..|+
T Consensus       298 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  374 (447)
T d1pw4a_         298 GIPGTLLCGWMSDKVFRGNRGATGVFFM-TLVTIATIVYWMNPAG--NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK  374 (447)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHH-HHHHHHHHHTTSCCTT--CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred             hhhhhhhhhhhhhhccccccccccchhH-HHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            9999999999999998543332222211 111111111111 111  111112222233345555566777889999999


Q ss_pred             CcchhHHHHHHHHHHhh-HH-HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011118          420 SDRCVVGGVQNSLQSTM-DL-MAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIR  479 (493)
Q Consensus       420 ~~rG~v~gv~~sl~~~f-~l-~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~R  479 (493)
                      +.||++.|+.+..+++. .+ ..++.+.+.+.-+......+....++.+..+++....++.|
T Consensus       375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (447)
T d1pw4a_         375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  436 (447)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999988875 44 46777787776665555555555555555555555544333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=6.4e-16  Score=151.59  Aligned_cols=366  Identities=11%  Similarity=-0.003  Sum_probs=201.3

Q ss_pred             chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHH
Q 011118           15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQN   94 (493)
Q Consensus        15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~   94 (493)
                      ++|+++.+...+++...+..++.-..|+++.+.++-|...+++...+..++.++.+++.|.+.||++|||++..+.....
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            46799999999999999999998888998888888899999999999999999999999999999999999988875544


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHH
Q 011118           95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID  174 (493)
Q Consensus        95 ~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriD  174 (493)
                      +....     .. ...    .... .....++...+.+.............     ......+++ .+..+.+.......
T Consensus        85 ~~~~~-----~~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~  147 (417)
T d1pv7a_          85 VMFAP-----FF-IFI----FGPL-LQYNILVGSIVGGIYLGFCFNAGAPA-----VEAFIEKVS-RRSNFEFGRARMFG  147 (417)
T ss_dssp             HTHHH-----HH-HHT----HHHH-HHTTCHHHHHHTTTTGGGGGTTHHHH-----HHHHHHHHH-HHHSCCHHHHHHHH
T ss_pred             HHHHH-----HH-Hhh----hhhh-HHHHHHHHHHHhhhcccccccchhhc-----ccccccchh-hhhHHHHHHHhhhh
Confidence            43211     11 110    0000 00011101011111111111111111     111111111 33455667777788


Q ss_pred             HHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118          175 LTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES  254 (493)
Q Consensus       175 l~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      ....+++|.++|.+....+.....    .......+.-....    -..|+..++.+++++       ++          
T Consensus       148 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~----------  202 (417)
T d1pv7a_         148 CVGWALGASIVGIMFTINNQFVFW----LGSGCALILAVLLF----FAKTDAPSSATVANA-------VG----------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHH----SSCCCSCSSSCSSHH-------HH----------
T ss_pred             cccccccccccccccccccccccc----chhhHHHHHHHHHH----HHhcccccchhhhhh-------hh----------
Confidence            889999999999998865433222    11112222111111    122222110000000       00          


Q ss_pred             ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHH-HHHhhhhhhHHHHHHH----HcCCCchH
Q 011118          255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL-FFTVLSFGTLMTATLE----WEGIPAYI  329 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalL-y~tVL~f~~l~~~yl~----~~gls~~~  329 (493)
                        .+++....       +...+.             .+++..+......+. ++....+......|..    +.+.++..
T Consensus       203 --~~~~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (417)
T d1pv7a_         203 --ANHSAFSL-------KLALEL-------------FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV  260 (417)
T ss_dssp             --SCCCCCCH-------HHHHHH-------------TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             --hhcccccc-------cccccc-------------cccccccchhhhhHHHHHHHHhhhccccccccccccccccchhh
Confidence              00000000       000000             111111111111111 1111112222222222    24556778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118          330 IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSV  409 (493)
Q Consensus       330 iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~  409 (493)
                      .+...+.++++++.+..+.+++.+|.|..+....+...   +........+.+ +.+...   ...++..++.-.+....
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~---~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI---MSVRIIGSSFAT-SALEVV---ILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHH---HHHHHHHHHTCC-CHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHH---HHHhhhcccccc-ccchhh---HHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999988876655531   111112222233 222222   22233334555668888


Q ss_pred             hhhhhccCCCCcchhHHHHHHHHH-Hhh-HHHHHHHHHhccCCC
Q 011118          410 IQQMQDLVPESDRCVVGGVQNSLQ-STM-DLMAYTMGIIISNPQ  451 (493)
Q Consensus       410 ~~l~Qe~vp~~~rG~v~gv~~sl~-~~f-~l~~~~~~ii~~~p~  451 (493)
                      ..++||.+|+++||++.|...++. .+. -++.++.|.+...-+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g  377 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999866543 333 566777777765443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.2e-05  Score=79.17  Aligned_cols=130  Identities=11%  Similarity=-0.059  Sum_probs=90.3

Q ss_pred             HHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 011118          304 LLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN  383 (493)
Q Consensus       304 lLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~  383 (493)
                      ..|+.-..++ ....|+.+.|+|++++|+..++..++..++.+..+++..|+|..|...++.....++...+   .+.+.
T Consensus        36 ~~~~~~~~~~-~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~---~~~~~  111 (447)
T d1pw4a_          36 AYYLVRKNFA-LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM---GFVPW  111 (447)
T ss_dssp             HHHHHHTSHH-HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCHH
T ss_pred             HHHHHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhc---cccch
Confidence            3333323344 3455788899999999999999999999999999999999998888777665332222221   11111


Q ss_pred             hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118          384 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD  437 (493)
Q Consensus       384 ~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~  437 (493)
                      ...+...++.+-.+..+|.-....+...++.|..|+++||+..|...+..++..
T Consensus       112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  165 (447)
T d1pw4a_         112 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  165 (447)
T ss_dssp             HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence            111223334444445555555677888899999999999999999887777663

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00022  Score=67.63  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             eecccchHHHHHHHHHHHHhh-hhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118          290 YLKQEVVLPGVSLALLFFTVL-SFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW  366 (493)
Q Consensus       290 y~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~  366 (493)
                      |+|||.++......++++... .+.+.+..|+++ .|+|+.++|++.++..++..++....+++..|+|-.|...++..
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~   81 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            467777766555555554333 345677788885 79999999999999999999999999999999999888777665