Citrus Sinensis ID: 011125

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
MKHLLALCFTLLLLCPLLLQETTSISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGEGNFVM
cccHHHHHHHHHHHHcHHccccccccccccHHHHHHHHHHHccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEccEEEcccccEEEEEccEEEEcccccccccEEEEEccccccccccccccccccccccccccccccEEEEEccccccccccccccccEEEEEEccEEEEEEEEEEEcccEEEEEccEEEEEEEcccccEEcccccccccccEEEEEEEcccccEEEEEEEEEEEEEEEEEcccEEEEEEEEEccccccccEEEEEEEcccEEEEEEcEEEcccccEEccccEEEEEccEEEEccEEEEEEcccEEEEEEEEccEEcccccccccEEEEcccccEEEEEEEEccccccEEEEEEccEEEEEccccEEEEEcccccccccccccEEEEEEEccccccccEEEEEEEcccEEEEEEccEEEEEEEEEEEcccccccccccc
ccHHHHHHHHHHHHHHHHHHccHHcHHHccHHHHcccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHccccccEEcccccccccEEEEccccEEEEcccEEEcccccEEEEEccEEEEccccccccEEEEEEcccccccccccccccccHHHccHHHccccccEEEEEEHHHHHccccccccEEEEEEcEEEEEccEEEEEEcccEEEEEcccEEEEEccccccEEEcccccccccccEEEEEcccccccEEEEEEEEccEEEEEEcccEEEEEEEEEccccccccEEEEEEccccccEEEEcEEEEccEEEEcccEEEEEEcccEccccEEEEEccccEEEEEEEEccccccccccccEEEEEcccccEEcEEEEEccccccEEEEEEEEEEEEcccccEEEEEcccEEEccccccEEEEEEEEccccccccccEEEEccccEEEEEEcccEEEEEEEEEEcccccccccEcc
MKHLLALCFTLLLLCPLllqettsiseenMPARLLAKLQVaqnapcpsassiknngrvfypigygadptganesSDAILQALNDAFNvqsglellpgvkdlggviidfqggnykiskpirfppgvgnvvvqggtlrasdtfpsdrhlielwapnsqklkrtdaikidrnyvfndvkdqtartyyeditfrdvlfdsgfrgggifvidsARIRINNCFFLHFTTqgilvqrghetfisscflgqrstvggdpgekgfsgtaidlasndnaitdVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIdncyldytgivledpvqvhvtngffLGDANIVLKSIKGRISGLTIVENmfngsparnvpiikldgefsniDQVVIERNNVNGMSLKSTAGklsvagngtkwvadfspilvfpnrishfqysmyvkglpRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDqynmvgegnfvm
MKHLLALCFTLLLLCPLLLQETTSISEENMPARLLAKLQVAQNAPCpsassiknngRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRAsdtfpsdrhlielwapnsqklkrtdaikidrnyvfndvkdqtartyyeditfrdVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAvdqynmvgegnfvm
MKHllalcftllllcplllQETTSISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPgvgnvvvqggTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGvtnvsdnvvvvesdRAVTAVVSVAVDQYNMVGEGNFVM
***LLALCFTLLLLCPLLLQETTSI*******RLLAKLQV***********IKNNGRVFYPIGYGADP*******DAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGG*****GFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGE*****
**HLLALCFTLLLLCPLLLQET*************************************YPIGYGADPTGANESSDAILQALNDAFNVQS*LELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAP********DAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGK*SVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVG*GNFVM
MKHLLALCFTLLLLCPLLLQETTSISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGEGNFVM
*KHLLALCFTLLLLCPLLLQETTSISEENM************************NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQ*****DAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGE*NF**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHLLALCFTLLLLCPLLLQETTSISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGEGNFVM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query493 2.2.26 [Sep-21-2011]
O49432481 Polygalacturonase QRT3 OS no no 0.858 0.879 0.491 1e-115
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1 Back     alignment and function desciption
 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/466 (49%), Positives = 301/466 (64%), Gaps = 43/466 (9%)

Query: 24  SISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALN 83
           S+   N+PA +       Q  P P         RV+  I YGADPTG  +S+DAIL+A+ 
Sbjct: 50  SLVRRNLPALVSPPPTPPQAVPGP---------RVYQVISYGADPTGKLDSTDAILKAME 100

Query: 84  DAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGNVVVQGGTLRASDTFP 142
           +AF+  +   L+ G+ DLGG  ID QGG+Y IS+P+RFP  G GN+++ GGTLRAS+ FP
Sbjct: 101 EAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFP 160

Query: 143 SDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYY--EDITFRDVLFDSGFRG 200
            DR+LIEL                         KD++++  Y  E IT RD+L D  +RG
Sbjct: 161 VDRYLIEL-------------------------KDESSKLQYIFEYITLRDLLIDCNYRG 195

Query: 201 GGIFVIDSARIRINNCFFLHF-TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGT 259
           G I VI+S R  I+NC+   F  T GILV+ GHET+I + FLGQ  T GGD GE+ FSGT
Sbjct: 196 GAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGT 255

Query: 260 AIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTR 319
           AI+L  NDNA+TD  IFSA IGV++ GQAN+++ VHCYNKAT FGG GI ++L      R
Sbjct: 256 AINLMGNDNAVTDTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNR 315

Query: 320 IDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVP 379
           I N YLDYTGIV EDPVQ+ ++  FFLGDA I+LKSI G I G++IV+NMF+GS    V 
Sbjct: 316 IVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFSGS-GHGVQ 374

Query: 380 IIKLDGE---FSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRIS 436
           I++LD     F ++ QVV++RN+VNGM  KST  + SV GNGT W  DF+P+L+FP+ I+
Sbjct: 375 IVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLIN 434

Query: 437 HFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQ 482
           H QY++ V     +F  + + NVSDN VVVE++  VT  V V V+Q
Sbjct: 435 HVQYTL-VASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ 479
Polygalacturonase required for degrading the pollen mother cell wall during microspore development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
356510814482 PREDICTED: polygalacturonase QRT3-like [ 0.959 0.981 0.682 0.0
356558236475 PREDICTED: polygalacturonase QRT3-like [ 0.920 0.955 0.673 1e-180
356528140491 PREDICTED: polygalacturonase QRT3-like [ 0.959 0.963 0.672 1e-178
358348522466 Polygalacturonase QRT3 [Medicago truncat 0.931 0.984 0.639 1e-177
224074137422 predicted protein [Populus trichocarpa] 0.853 0.997 0.701 1e-174
297738013472 unnamed protein product [Vitis vinifera] 0.955 0.997 0.643 1e-172
225423624469 PREDICTED: polygalacturonase QRT3-like [ 0.855 0.899 0.689 1e-169
357449213488 Polygalacturonase QRT3 [Medicago truncat 0.951 0.961 0.648 1e-167
388498170491 unknown [Medicago truncatula] 0.951 0.955 0.646 1e-167
255585445405 conserved hypothetical protein [Ricinus 0.819 0.997 0.714 1e-164
>gi|356510814|ref|XP_003524129.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/482 (68%), Positives = 383/482 (79%), Gaps = 9/482 (1%)

Query: 6   ALCFTLLLLCPLLLQETT--SISEENMPARLLAKL-QVAQNAPCPSASS-IKNNGRVFYP 61
           A+ F LLL     L+ TT  + ++E   +    K+ +  Q    P++SS  K +GRV Y 
Sbjct: 5   AVYFVLLLFVVAELEATTCFTFNKEKKLSEFKTKVHEKIQKLSAPASSSETKKSGRVLYV 64

Query: 62  IGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRF 121
             YGADPTG  ESSD IL+A+ DAF +Q G+E + GV DLGGV+ID +GGNYKISKPI F
Sbjct: 65  SEYGADPTGNEESSDGILKAVEDAFALQKGVEFVGGVNDLGGVVIDLEGGNYKISKPISF 124

Query: 122 PP-GVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTA 180
           P  G  N+VV+GGTLRASDTFP DRHLIELW+ NS KL+  +++  D   VF  +K Q  
Sbjct: 125 PSSGGANLVVKGGTLRASDTFPGDRHLIELWSSNSGKLETKESLNAD---VFKSIKAQNN 181

Query: 181 RTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCF 240
             YYEDITFRD+LFDS +RGGGIF++DSAR RINNCFFLHFTT+GILVQ+GHETFISSCF
Sbjct: 182 AIYYEDITFRDILFDSSYRGGGIFIVDSARTRINNCFFLHFTTEGILVQQGHETFISSCF 241

Query: 241 LGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKA 300
           LGQ STVGGD GEK FSG AIDLASNDNA+TDV IFSAAIGV+LRGQANI+T VHCYNKA
Sbjct: 242 LGQHSTVGGDKGEKDFSGVAIDLASNDNAVTDVAIFSAAIGVVLRGQANILTGVHCYNKA 301

Query: 301 TAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRI 360
           T FGGIGILVKLA  +LTRIDNCYLDYTGIV+EDPVQVHVTNG FLGDANIVLKSIKG+I
Sbjct: 302 TYFGGIGILVKLAGNSLTRIDNCYLDYTGIVMEDPVQVHVTNGLFLGDANIVLKSIKGQI 361

Query: 361 SGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTK 420
            GL IV+NMFNG P + VPI+KLDGEFS+I+QVVI+RNNVNGMSL+ST GKL+ +GNGTK
Sbjct: 362 FGLNIVDNMFNGDPNKKVPIVKLDGEFSSIEQVVIDRNNVNGMSLRSTVGKLTASGNGTK 421

Query: 421 WVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAV 480
           WVADFS +LVFPNRISHFQYS Y +   + FVA  +TNVSDNVVVVES++     VS  V
Sbjct: 422 WVADFSSVLVFPNRISHFQYSFYAQDEAK-FVALSMTNVSDNVVVVESEKEAKGFVSFKV 480

Query: 481 DQ 482
           +Q
Sbjct: 481 EQ 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356558236|ref|XP_003547413.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
>gi|356528140|ref|XP_003532663.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
>gi|358348522|ref|XP_003638294.1| Polygalacturonase QRT3 [Medicago truncatula] gi|355504229|gb|AES85432.1| Polygalacturonase QRT3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224074137|ref|XP_002304268.1| predicted protein [Populus trichocarpa] gi|222841700|gb|EEE79247.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738013|emb|CBI27214.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225423624|ref|XP_002275888.1| PREDICTED: polygalacturonase QRT3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357449213|ref|XP_003594883.1| Polygalacturonase QRT3 [Medicago truncatula] gi|355483931|gb|AES65134.1| Polygalacturonase QRT3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388498170|gb|AFK37151.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255585445|ref|XP_002533416.1| conserved hypothetical protein [Ricinus communis] gi|223526729|gb|EEF28959.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
TAIR|locus:2119817483 AT4G20040 "AT4G20040" [Arabido 0.902 0.921 0.592 3.1e-138
TAIR|locus:2119832481 QRT3 "QUARTET 3" [Arabidopsis 0.651 0.667 0.492 7.5e-101
TAIR|locus:2119817 AT4G20040 "AT4G20040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
 Identities = 271/457 (59%), Positives = 329/457 (71%)

Query:    27 EENMPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAF 86
             +E +  RL A          PS+ S K  G+V YPIGYGADPTG  +SSDAIL+AL DAF
Sbjct:    38 QEKIQERL-AVTPTLSPVSSPSSHSPKMVGKVIYPIGYGADPTGGQDSSDAILEALTDAF 96

Query:    87 NVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPXXXXXXXXXX-TLRASDTFPSDR 145
              +Q+GLE+LP V DLGG++ID QGG+Y I KP+RFP            T RAS+ FP DR
Sbjct:    97 QLQTGLEMLPRVADLGGLVIDLQGGSYMIGKPLRFPSSGGGNLVVKGGTFRASELFPGDR 156

Query:   146 HLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFV 205
             HL+EL A N++K      +K+     F+D KDQ++  +YED+TF+DVLFDS FRGGGI V
Sbjct:   157 HLVELVASNAKK-----PMKMSPEESFSDQKDQSSGIFYEDVTFQDVLFDSRFRGGGILV 211

Query:   206 IDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS 265
             IDSARIRI NC+FLHFTTQGI VQ GHET+IS+ FLGQ STVGGD  E+GF+GT ID++S
Sbjct:   212 IDSARIRITNCYFLHFTTQGIKVQGGHETYISNSFLGQHSTVGGDREERGFTGTGIDISS 271

Query:   266 NDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYL 325
             NDNAITDV IFSA IG+ L G AN+VT VHCYNKAT FGGIGILVK   + LTRIDNCYL
Sbjct:   272 NDNAITDVVIFSAGIGISLNGGANMVTGVHCYNKATWFGGIGILVK---SHLTRIDNCYL 328

Query:   326 DYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDG 385
             DYTGIV+EDPV VHVTN  FLGDANIVL+S+ G+ISG+ IV NMF+G+   N PI+KL+G
Sbjct:   329 DYTGIVIEDPVHVHVTNALFLGDANIVLRSVHGKISGVNIVNNMFSGTAKNNFPIVKLEG 388

Query:   386 EFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVK 445
             EF +I+QVVI++NN  GM LKST GK  V+ NGT+W+ADFSP+LVFPNRI+H+Q+S + +
Sbjct:   389 EFHDINQVVIDQNNAEGMMLKSTTGKAMVSANGTRWIADFSPVLVFPNRINHYQHSFFAQ 448

Query:   446 GLPRLFVAYGXXXXXXXXXXXXXXRAVTAVVSVAVDQ 482
                    A                RAVT  VS+   Q
Sbjct:   449 S--GQIPANAVTNVSNNMVVVETDRAVTGTVSIIAYQ 483
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2119832 QRT3 "QUARTET 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 493
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.96
PLN02218431 polygalacturonase ADPG 99.96
PLN02793443 Probable polygalacturonase 99.95
PLN02155394 polygalacturonase 99.94
PLN03003456 Probable polygalacturonase At3g15720 99.93
PLN03010409 polygalacturonase 99.93
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.92
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.82
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.56
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.39
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.09
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.82
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.29
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.26
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.05
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.88
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.82
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.45
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.35
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.25
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.14
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.08
PLN02665366 pectinesterase family protein 97.06
PLN02793443 Probable polygalacturonase 96.59
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.52
PLN02480343 Probable pectinesterase 96.36
PLN02155394 polygalacturonase 96.35
PLN03010409 polygalacturonase 96.2
PLN02682369 pectinesterase family protein 96.19
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.18
PRK10531422 acyl-CoA thioesterase; Provisional 96.11
PLN02634359 probable pectinesterase 95.86
PLN02176340 putative pectinesterase 95.84
PLN02773317 pectinesterase 95.65
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.39
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.36
PLN02218431 polygalacturonase ADPG 95.09
PLN02916502 pectinesterase family protein 94.86
PLN03003456 Probable polygalacturonase At3g15720 94.53
PF1221867 End_N_terminal: N terminal extension of bacterioph 94.28
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.77
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.68
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.61
PLN02497331 probable pectinesterase 93.56
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.39
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.17
PLN02432293 putative pectinesterase 93.01
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 92.46
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 92.16
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.12
PLN02301548 pectinesterase/pectinesterase inhibitor 91.99
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 91.82
PLN02197588 pectinesterase 91.77
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 91.59
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 91.38
PLN02506537 putative pectinesterase/pectinesterase inhibitor 91.24
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.1
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.05
PLN02217670 probable pectinesterase/pectinesterase inhibitor 91.04
PLN02484587 probable pectinesterase/pectinesterase inhibitor 90.69
PLN02671359 pectinesterase 90.59
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.55
PLN02314586 pectinesterase 90.5
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 90.43
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 90.12
PLN02304379 probable pectinesterase 89.64
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 88.91
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 86.12
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 85.95
smart00656190 Amb_all Amb_all domain. 84.91
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 84.14
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 80.55
smart00656190 Amb_all Amb_all domain. 80.5
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information 
Probab=99.96  E-value=1e-28  Score=258.95  Aligned_cols=272  Identities=21%  Similarity=0.306  Sum_probs=215.0

Q ss_pred             CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCcceeEeCCe
Q 011125           55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGT  134 (493)
Q Consensus        55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i~~GT  134 (493)
                      ..|.+|+++|||+|||++|+|+|||+||++|.              .++.+|.||+|+|+. +||+|++.. .+...+|.
T Consensus        34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa--------------~gG~tV~Lp~G~Y~~-G~L~L~spl-tL~G~~gA   97 (455)
T TIGR03808        34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAA--------------RAQTPLALPPGVYRT-GPLRLPSGA-QLIGVRGA   97 (455)
T ss_pred             CccCCCHHHcCcCCCCcchHHHHHHHHHHHhh--------------cCCCEEEECCCceec-ccEEECCCc-EEEecCCc
Confidence            34569999999999999999999999999763              134689999999987 799999643 34444454


Q ss_pred             EEecCCCCCCcceEEeccCCCcccccccceeeccceeecccccCcCCccccceeeeeeEeecc-----eeecceEEeeee
Q 011125          135 LRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSG-----FRGGGIFVIDSA  209 (493)
Q Consensus       135 LkAs~~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~~s~~~~~~~~~IT~~~lv~D~n-----~~ggGI~v~nSq  209 (493)
                      .+  ..|.++..+|..-                               .-++++++.+.+|..     .+-.+|.+..++
T Consensus        98 t~--~vIdG~~~lIiai-------------------------------~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~  144 (455)
T TIGR03808        98 TR--LVFTGGPSLLSSE-------------------------------GADGIGLSGLTLDGGGIPLPQRRGLIHCQGGR  144 (455)
T ss_pred             EE--EEEcCCceEEEEe-------------------------------cCCCeEEEeeEEEeCCCcccCCCCEEEEccCC
Confidence            21  0223333333211                               123334444444442     355789998899


Q ss_pred             cEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCceeeeEEEeecceeEEEe----
Q 011125          210 RIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLR----  285 (493)
Q Consensus       210 ~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ItD~~i~sa~~GI~v~----  285 (493)
                      ++.|.+|++.+..-.||+++++. ..|+++.|....    +.+.+.+...++.+++|  .|.++    ...||++.    
T Consensus       145 ~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N--~I~g~----RD~gi~i~r~~~  213 (455)
T TIGR03808       145 DVRITDCEITGSGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARN--TIIGA----NDNGIEILRSAI  213 (455)
T ss_pred             ceEEEeeEEEcCCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECC--EEEcc----CCCCeEEEEeee
Confidence            99999999987777999999998 888888886554    33466666677777776  77777    77788886    


Q ss_pred             -cceeEEEeeEEecccccccceeEEEe-----ccc---cccceecccccccceeeeeCCeeEEEEceeeeecceeEEEee
Q 011125          286 -GQANIVTRVHCYNKATAFGGIGILVK-----LAD---AALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSI  356 (493)
Q Consensus       286 -gq~~ii~gvh~yN~~t~~GG~Gi~~~-----~~~---~~~~rI~ncyldy~~iv~~d~~~~~It~~~flg~a~v~l~~~  356 (493)
                       ....+++++++.+++.+.||+|+++|     +++   ++.|||++|  +|.+|+.|.+++.||++|.|++.++++|+.+
T Consensus       214 ~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~--r~dgI~~nsss~~~i~~N~~~~~R~~alhym  291 (455)
T TIGR03808       214 GDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC--DYSAVRGNSASNIQITGNSVSDVREVALYSE  291 (455)
T ss_pred             cCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc--ccceEEEEcccCcEEECcEeeeeeeeEEEEE
Confidence             33889999999999999999999888     333   899999999  9999999999999999999999999999999


Q ss_pred             cceeeeeEEEeeeccCCCCCCcceEeec--Cceeee
Q 011125          357 KGRISGLTIVENMFNGSPARNVPIIKLD--GEFSNI  390 (493)
Q Consensus       357 ~~~~~g~~I~~N~~~g~~~~gv~iv~~~--g~f~~i  390 (493)
                       ++++|..|.+|.++|+ ..|+++++|+  |+...+
T Consensus       292 -fs~~g~~i~~N~~~g~-~~G~av~nf~~ggr~~~~  325 (455)
T TIGR03808       292 -FAFEGAVIANNTVDGA-AVGVSVCNFNEGGRLAVV  325 (455)
T ss_pred             -EeCCCcEEeccEEecC-cceEEEEeecCCceEEEE
Confidence             9999999999999999 9999999999  666544

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-05
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-04
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-04
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.92
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.9
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.84
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.83
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.78
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.75
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.66
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.64
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.48
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.48
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.42
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.38
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.38
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.35
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.33
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.3
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.25
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.12
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.35
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 98.24
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.19
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.8
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.73
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.33
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.26
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.23
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.21
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.19
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.16
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.16
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.95
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.94
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 96.73
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.71
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.57
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.55
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.51
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.48
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.46
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.43
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.19
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.16
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.01
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 95.46
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 94.93
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.91
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 94.55
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 94.25
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 93.97
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 93.59
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 92.84
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 92.62
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 92.5
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 91.98
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 91.91
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 91.59
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 91.12
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 90.78
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 89.79
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 89.6
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 87.67
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 87.19
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 85.03
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 81.53
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
Probab=99.97  E-value=2.1e-30  Score=284.36  Aligned_cols=236  Identities=22%  Similarity=0.181  Sum_probs=180.7

Q ss_pred             ccccccccchhhHhhhhhcccCCCCCCCCCCCCCeEE-eeccccCCCCCCchhHHHHHHHHHhhhcc---CCCccccccc
Q 011125           23 TSISEENMPARLLAKLQVAQNAPCPSASSIKNNGRVF-YPIGYGADPTGANESSDAILQALNDAFNV---QSGLELLPGV   98 (493)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~-nV~dYGAdptG~tDsT~Aiq~AI~~A~~~---~~~~~l~pgi   98 (493)
                      ++.......+|||++|+|+|.+||.+.++   .|+|| ||+||||++||++|||+|||+||++|.++   |..++.    
T Consensus        16 ~~~~~~~~~~~Wl~~i~h~G~~p~~~~~~---~y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~~Gggc~~st~----   88 (758)
T 3eqn_A           16 THGSAAPGDPFWLQNIQHQGIAAFNGNPG---GYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTT----   88 (758)
T ss_dssp             CSCCCCTTSCCHHHHSCCCCCCTTSSCTT---TCCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSCSCTTCCCCSS----
T ss_pred             CCCccccCCCcchhccccCCcCCCCCCCC---CCeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhhcccccccccc----
Confidence            44444456679999999999999976322   78888 99999999999999999999999987443   222322    


Q ss_pred             ccCCceEEEecCceEEeeccEEeCCCCcceeEe---CCeEEecCCCCCCcceEEeccCCCcccccccceeeccceeeccc
Q 011125           99 KDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQ---GGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDV  175 (493)
Q Consensus        99 ~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~i~---~GTLkAs~~Fpgd~~lI~~~~~n~~~i~G~~~GtlDg~w~~~c~  175 (493)
                         .+++||||+|+|+|++||++|++. .+...   .++|||.+.|.+.. +|+...-.     +.  |  ..||.    
T Consensus        89 ---~~~~V~~P~GtYlvs~tI~l~~~t-~L~G~~~~~pvIka~~~F~G~~-li~~d~y~-----~~--G--~~w~~----  150 (758)
T 3eqn_A           89 ---QPALVYFPPGTYKVSSPLVVLYQT-QLIGDAKNLPTLLAAPNFSGIA-LIDADPYL-----AG--G--AQYYV----  150 (758)
T ss_dssp             ---SCEEEEECSSEEEESSCEECCTTE-EEEECSSSCCEEEECTTCCSSC-SEESSCBC-----GG--G--CBSSC----
T ss_pred             ---cceEEEECCceEEEcccEEccCCe-EEEecCCCCCeEecCCCCCCcc-eeeccccC-----CC--C--ccccc----
Confidence               348999999999999999999874 44322   25899999998754 67542111     00  0  11331    


Q ss_pred             ccCcCCccccceeeeeeEeecce---eecceEEeeeecEEEeeeEEeeeccCcEEEeeeeeEEEeeeeeeeccccCCCCC
Q 011125          176 KDQTARTYYEDITFRDVLFDSGF---RGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPG  252 (493)
Q Consensus       176 ~s~~~~~~~~~IT~~~lv~D~n~---~ggGI~v~nSq~v~I~NC~~~~fnTDGI~V~~s~~v~Isns~ig~~~t~ggd~~  252 (493)
                           +.+.+++.+++|++|...   ...+|+|..+|.++|.||+|.                        |++..|   
T Consensus       151 -----~~~~F~r~irNlviD~t~~~~~~~gIhw~vaQatsL~Nv~i~------------------------m~~~sg---  198 (758)
T 3eqn_A          151 -----NQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQ------------------------MSTAAG---  198 (758)
T ss_dssp             -----GGGCCCEEEEEEEEECTTCSSCEEEEECCCCSSEEEEEEEEE------------------------CCCSTT---
T ss_pred             -----cccceeeeecceEEeccccCCCceEEEEEecCceEEEEEEEE------------------------ecCCCC---
Confidence                 467899999999999864   368999999999999999887                        664322   


Q ss_pred             ccccceEEEEEc-cCCceeeeEEEeecceeEEEecceeEEEeeEEecccccccceeEEEec-cc--cccceeccc
Q 011125          253 EKGFSGTAIDLA-SNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKL-AD--AALTRIDNC  323 (493)
Q Consensus       253 e~~f~gtGI~l~-gNd~~ItD~~i~sa~~GI~v~gq~~ii~gvh~yN~~t~~GG~Gi~~~~-~~--~~~~rI~nc  323 (493)
                         ..+.||.|+ |....|+|++|.++++||++++||+++++++|+|++|+     |+..- -+  +..-.|.||
T Consensus       199 ---~~~~GI~~e~GSgg~i~Dl~f~GG~~G~~~gnQQfT~rnltF~~~~ta-----I~~~w~wgwt~~~~~i~nc  265 (758)
T 3eqn_A          199 ---NQHQGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTA-----INAIWNWGWTFQRITINNC  265 (758)
T ss_dssp             ---CCEEEEEECSCCCCEEEEEEEESCSEEEEEECSCCEEEEEEEESCSEE-----EEEEEBSCEEEEEEEEESC
T ss_pred             ---CcceeEEecCCCceEEEeeEEeCCceEEEcCCcceEEeccEEeChHHH-----HhhhcCceEEEEEeEEECC
Confidence               248999999 67889999999999999999999999999999999874     34431 12  445677888
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 493
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-05
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 47/379 (12%), Positives = 102/379 (26%), Gaps = 79/379 (20%)

Query: 44  APCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGG 103
            P  SAS+ K   +    + YGA    + +   AI  A     +              GG
Sbjct: 7   GPLTSAST-KGATKTCNILSYGAVADNSTDVGPAITSAWAACKS--------------GG 51

Query: 104 VIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIE-------------- 149
           ++     GNY ++  +    G    +   G +  + T   +   +               
Sbjct: 52  LVY-IPSGNYALNTWVTLTGGSATAIQLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKG 110

Query: 150 -------LWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYY------EDITFRDVLFDS 196
                  ++        R   +    ++  +D+    A  ++       D    ++    
Sbjct: 111 AVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG 170

Query: 197 GFRGGG-IFVIDSARIRINNCFFLHFTTQGILVQRGHETFIS--SCFLGQRSTVGGDPGE 253
           G  GG     +  + I +++    +      +    +   +    C       +G    +
Sbjct: 171 GNEGGLDGIDVWGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD 230

Query: 254 KGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLA 313
              +         D    +V  +S+    +++      T  +   +     G    +   
Sbjct: 231 TDVT---------DIVYRNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSL--- 278

Query: 314 DAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENM-FNG 372
                 ID  +   T         V +         NI +K+ KG  +       +    
Sbjct: 279 -----DIDGYWSSMTA---VAGDGVQLN--------NITVKNWKGTEANGATRPPIRVVC 322

Query: 373 SPARNVPIIKLDGEFSNID 391
           S     P   L     +I 
Sbjct: 323 SD--TAPCTDL--TLEDIA 337

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.9
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.74
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.72
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.63
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.52
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.45
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.36
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.12
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 98.0
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.66
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.42
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.4
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.1
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.06
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.55
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.51
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.18
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.83
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.63
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 94.95
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.65
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.49
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 92.28
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 90.99
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 90.67
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 89.09
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 88.96
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 86.88
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.90  E-value=1.8e-22  Score=207.45  Aligned_cols=234  Identities=13%  Similarity=0.121  Sum_probs=151.9

Q ss_pred             CCeEEeeccccCCCCCCchhHHHHHHHHHhhhccCCCcccccccccCCceEEEecCceEEeeccEEeCCCCccee-EeCC
Q 011125           55 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG  133 (493)
Q Consensus        55 ~~rv~nV~dYGAdptG~tDsT~Aiq~AI~~A~~~~~~~~l~pgi~~~Gga~V~lPgGTYlIs~pI~lp~g~Gni~-i~~G  133 (493)
                      ..++|||+||||++||++|+|+|||+||+ ||+              +|++|++|+|+|+|++||.|.... ++. ..+|
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--------------~gg~V~iP~Gty~l~~~i~l~g~~-~~~l~~~G   80 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--------------SGGLVYIPSGNYALNTWVTLTGGS-ATAIQLDG   80 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--------------BTCEEEECSSEEEECSCEEEESCE-EEEEEECS
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--------------CCCEEEECCCcEEEeCcEEEcCCC-ceEEEEeE
Confidence            57899999999999999999999999995 673              246899999999999999998321 333 6889


Q ss_pred             eEEecCCCCCCcceEEeccCC---Ccccccccceeecc----ceeecccccCcCCccccceeeeeeEeecceeecceEEe
Q 011125          134 TLRASDTFPSDRHLIELWAPN---SQKLKRTDAIKIDR----NYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVI  206 (493)
Q Consensus       134 TLkAs~~Fpgd~~lI~~~~~n---~~~i~G~~~GtlDg----~w~~~c~~s~~~~~~~~~IT~~~lv~D~n~~ggGI~v~  206 (493)
                      +|+++...++  +|+.+....   ...+.|  .|++||    ||..          ......+..|....+....+++++
T Consensus        81 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~g--~G~IdG~G~~~~~~----------~~~~p~~l~~~~~~n~~i~git~~  146 (422)
T d1rmga_          81 IIYRTGTASG--NMIAVTDTTDFELFSSTS--KGAVQGFGYVYHAE----------GTYGARILRLTDVTHFSVHDIILV  146 (422)
T ss_dssp             EEEECCCCSS--EEEEEEEEEEEEEECSSS--CCEEECCTHHHHTT----------TCCCCEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEeccCCcc--CEEEeccCccEEEEEeec--ceEEecCcceecCC----------CCCCCcEEEEEeeeeeEEECcEec
Confidence            9998875544  344433322   122233  388998    3421          111223334445567778888888


Q ss_pred             eeec--EEEeeeEEeee-----------ccCcEEEeeeeeEEEeeeeeeeccccCCCCCccccceEEEEEccCCceeeeE
Q 011125          207 DSAR--IRINNCFFLHF-----------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDV  273 (493)
Q Consensus       207 nSq~--v~I~NC~~~~f-----------nTDGI~V~~s~~v~Isns~ig~~~t~ggd~~e~~f~gtGI~l~gNd~~ItD~  273 (493)
                      ||++  +.+.+|....+           |||||++.++ .+.|+||+|..     ||.      ...|+-...+=.|.++
T Consensus       147 nsp~~~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~~s-nv~I~n~~i~~-----gDD------cIaiks~s~nI~i~n~  214 (422)
T d1rmga_         147 DAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWGS-NIWVHDVEVTN-----KDE------CVTVKSPANNILVESI  214 (422)
T ss_dssp             CCSSCSEEEEEEEEEEEEEEEEECCSSTTCCSEEEEEE-EEEEEEEEEES-----SSE------EEEEEEEEEEEEEEEE
T ss_pred             CCCceEEEEeccccEEEEeeEEcCCCCCccceEeeccc-EEEEEeeEEEc-----CCC------ccccCCCCccEEEEee
Confidence            8876  67777766544           8999999765 69999999962     232      3334333333467776


Q ss_pred             EEeecceeEEEec--ceeEEEeeEEecccccccceeEEEeccccccceecccccccceeeeeC
Q 011125          274 TIFSAAIGVLLRG--QANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLED  334 (493)
Q Consensus       274 ~i~sa~~GI~v~g--q~~ii~gvh~yN~~t~~GG~Gi~~~~~~~~~~rI~ncyldy~~iv~~d  334 (493)
                      . .+..+|+.+..  +..-++++++.|+...-.-.|+..|-.+ ....++|.  -|..|++++
T Consensus       215 ~-c~~g~GisiGs~g~~~~V~nV~v~n~~~~~s~~g~~ik~~~-g~G~V~nI--~f~Ni~~~n  273 (422)
T d1rmga_         215 Y-CNWSGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNG-GSGTVSNV--LLENFIGHG  273 (422)
T ss_dssp             E-EESSSEEEEEEECTTEEEEEEEEEEEEEESSSCSEEEEEBB-CCEEEEEE--EEEEEEEEE
T ss_pred             E-EccccceeEeeccCCCCEEEEEEEeEEEeCCCceEEEEEcC-CCceecce--EEEEEEEec
Confidence            5 45567998873  3344677766666543333455555322 12345554  455555554
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure