Citrus Sinensis ID: 011129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFFY
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccHHHHHHHHcccccEcHHHHHccccccccccccccccccccccccccEEcccccccccHHHcccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAMVQLCckipskeqllpipkivrqnergfkchcisltensrfsstsdnMCKRwrsiypnqdvaelpvqwkmsnitshvgsfskkastKEKLRMVRCaakssdseCQIRILESYLAKlkddsiqnssessgeieelhsrsgeinaktELDSLDAYLGKLntdakfstdqttERNLVAAQLSIsksskrgymgklkgyrelrnkdgVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIaspirnsefgffslpllygakINELILVGEWWRLVTPMFLHSGLFHVALSCWALLtfgpqvcksygpfTFFLIYTLggisgnltsflhtpeptvggtgpVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIsnfgpvdtwAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCkeiilgghrgkrlQTLEAFAVISLLSQLLYLGLVHAWFFY
Flexible Loop (DISEMBL)
MAMVQLCckipskeqllpipKIVRQNERGFKCHCIsltensrfsstsDNMCKRWRSIYPNQDVAELPVQWKMSNItshvgsfskkastkeKLRMVRcaakssdsecqIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDakfstdqtternlvaaqlsisksskrgymgklkgyrelrnkdgvrslERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFFY
Low Complexity Region (SEG)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHlrawrseslaaasslailsCFVCKEIILGGHRGKRLQTLEAFAVISllsqllylglVHAWFFY
Disordered region (IsUnstruct)
***VQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHV**************************CQIRILESYLA**************************************YL**********************************************************L**TEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFF*
Disordered Region (DISOPRED)
*AMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTE**************WRSIYPNQDVAELPVQWKMSNITSHV*********************************SYLAKLKDDSIQN***************************DAYLGKLNTDA********************************************************ETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFFY
Disordered Region (DISEMBL)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVG************************ECQIRILESYLAKLKD********************GEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFFY
Disordered Region (DISPRO)
*AMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSS**DNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKD**********GEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD***ERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFFY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCFVCKEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHAWFFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
P54493	507	Rhomboid protease GluP OS	yes	no	0.326	0.317	0.352	2e-21
P96617	199	Putative rhomboid proteas	no	no	0.267	0.663	0.324	8e-13
P46116	281	Rhomboid protease AarA OS	yes	no	0.359	0.629	0.289	8e-12
Q695T9	283	Rhomboid-like protease 2	N/A	no	0.330	0.575	0.301	4e-11
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.241	0.452	0.328	3e-07
Q695T8	641	Rhomboid-like protease 4	N/A	no	0.277	0.213	0.304	1e-05
C8VCL5	503	Uncharacterized rhomboid	no	no	0.283	0.278	0.251	5e-05
Q6GMF8	857	Inactive rhomboid protein	no	no	0.271	0.156	0.268	0.0002
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.259	0.149	0.282	0.0002
B0VX73	855	Inactive rhomboid protein	yes	no	0.259	0.149	0.274	0.0003

>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 9/170 (5%)

Query: 225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
           YL I + I +  FL EI     N+E       + +GAK N LI  GEWWRL+TP+ LH G
Sbjct: 181 YLFIALQI-LMFFLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVLHIG 234

Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 344
           + H+A +  AL + G  V + YG   F LIY   GI+G++ SF+ +P P+ G +G +F  
Sbjct: 235 IAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGC 294

Query: 345 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLG 394
           +GA L     N+ +  + +   +    I++    F +SN   +D   H+G
Sbjct: 295 LGALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG 341

Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 270 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH 329
           GEWWRL+TP+ LH+G  H+  +  ++  F P + +  G   F L+Y   GI GN+ +++ 
Sbjct: 56  GEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVT 115

Query: 330 TP--EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPV 387
            P     VG +G +F + G +L       +LI ++ S+ +      +  +SFI SN   +
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---I 172

Query: 388 DTWAHLGAAFTDLGGNTSTWFLLTF 412
           +  AHL   F   GG     FLL+F
Sbjct: 173 NMMAHL---FGLCGG-----FLLSF 189

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 30/207 (14%)

Query: 229 LVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
           LV +++AV+ ++I  ASP+ + E    S  +L+GA I +L L G+WWR    M LHS   
Sbjct: 27  LVLLNIAVYFYQIVFASPLDSRE----SNLILFGANIYQLSLTGDWWRYPISMMLHSNGT 82

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-TSFLHTPEPT----------- 334
           H+A +C AL   G    ++YG F    IY + GI   L +++    E +           
Sbjct: 83  HLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDSTVY 142

Query: 335 ----VGGTGPVFAIIGAWLIYQFQ------NKDLIAKDVSERMFQKAILSTALSFIISNF 384
               VG +G +  I  A +IY  +      N   + +   +      I   AL+ I    
Sbjct: 143 ITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLINGLQ 202

Query: 385 GPVDTWAHLGAAFTDLGGNTSTWFLLT 411
             VD  AH+G A   +G   S  ++L 
Sbjct: 203 SGVDNAAHIGGAI--IGALISIAYILV 227

Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N-terminal extension.

Providencia stuartii (taxid: 588)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 16/179 (8%)

Query: 226 LIILVSIDVAVFLFEIASPIRNSEFGFFSLP---LLYGAKINELILVGEWWRLVTPMFLH 282
           +II+  + +AV++  +A+ +  +E      P   +++GA I ELI VGE WRL+ P+FLH
Sbjct: 62  IIIISFVQIAVYIASLAAGLAPNEI-LAPTPQTLVMFGANIPELIRVGEIWRLICPLFLH 120

Query: 283 SGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--FLHTPEPTVGGTGP 340
             LFH+ ++ W  +  G  + + YG      +Y   G+  N+ S   L   +   G +  
Sbjct: 121 LNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTA 180

Query: 341 VFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF---IISNFGP-VDTWAHLGA 395
           VFA+IG     Q     LI   + +R    AI+S  +      +S+FG  +D+  H+G 
Sbjct: 181 VFALIGV----QLAELALIWHAIQDR--NSAIISVCICLFFVFVSSFGSHMDSVGHIGG 233

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 9/128 (7%)

Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
           WR+VTP+FLH+ + H+ L+   +L    ++ + YG   F + Y L  I GNL S L  P 
Sbjct: 84  WRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPW 143

Query: 333 P-TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSE---RMFQKAILSTALSFIISNFG-PV 387
             +VG +   F IIG           ++   +SE   R++   I   A+     +FG  V
Sbjct: 144 ALSVGASTAGFGIIGG----MAAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTV 199

Query: 388 DTWAHLGA 395
           DT+ HLG 
Sbjct: 200 DTFGHLGG 207

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)

Query: 258 LYGAKINELILVGEWWRLVTPMFLHSGLFH--VALSCWALLTFGPQVCKSYGPFTFFLIY 315
           L G + N +    E +RL T M++H G  H  + LSC   + +   +   +G     L++
Sbjct: 328 LGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILW--IIEPDWGFLRTTLLF 385

Query: 316 TLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILS 374
            LGGISGNL S +  P   TVG +G ++A++GA + Y  +    I +     +F   ++ 
Sbjct: 386 FLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVFMIVVI- 444

Query: 375 TALSFIISNFGPVDTWAHLGAAFTDLGG 402
             +  +    G  D +AH+G A   LGG
Sbjct: 445 --IGILTGMAGFTDNYAHMGGA---LGG 467

Putative serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 251 GFFSLPLLY-GAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPF 309
           GF  +P  + G  +++     +W+R + PMFLHSG  H+  +    +T G  + +  G +
Sbjct: 229 GFDGVPNPHPGGSLDDKPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWW 288

Query: 310 TFFLIYTLGGISGNL--TSFLHTPEPTVGGTGPVFAIIGAW---LIYQFQNKDLIAKDVS 364
            + L+Y   GI G +   ++    E + G +G +F I+  +   L+Y + ++        
Sbjct: 289 RYGLVYLSSGIWGFVLGGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQ---NPWV 345

Query: 365 ERMFQKAILSTALSFIISNFGPVDTWAHLGA 395
           E +    +L  A+SF++     +D ++HLG 
Sbjct: 346 ELIIM--VLGIAVSFVLGLLPGLDNFSHLGG 374

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 11/145 (7%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L GI+GNL S +  
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +   Q+  ++A+    R F K +      F       +D 
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQ--PWRAFTKLLCVVLFLFAFGLLPWIDN 771

Query: 390 WAHLGAAFTDLGGNTSTWFLLTFAL 414
           +AH+    +         F L+FA 
Sbjct: 772 FAHISGFISG--------FFLSFAF 788

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L GI+GNL S +  
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFAFGLLPWIDN 770

Query: 390 WAHLGAAFTDL 400
           +AH+    + L
Sbjct: 771 FAHISGFVSGL 781

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHT 330
           +++RL   +FLH+G+ H  +S    +T    + K  G     +IY L G++GNL S +  
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 331 P-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDT 389
           P    VG  G  F I+    +  FQ+  ++A+    R F K +      F       +D 
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILAR--PWRAFFKLLAVVLFLFTFGLLPWIDN 769

Query: 390 WAHLGAAFTDL 400
           +AH+    + L
Sbjct: 770 FAHISGFISGL 780

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
147826430	585	hypothetical protein VITISV_003619 [Viti	0.979	0.825	0.489	1e-129
224127432	492	predicted protein [Populus trichocarpa]	0.803	0.804	0.511	1e-116
225451989	486	PREDICTED: uncharacterized protein LOC10	0.805	0.816	0.529	1e-110
296087301	523	unnamed protein product [Vitis vinifera]	0.805	0.759	0.529	1e-110
255551392	429	conserved hypothetical protein [Ricinus	0.634	0.729	0.584	1e-106
356545710	503	PREDICTED: uncharacterized protein LOC10	0.807	0.791	0.483	1e-103
356573948	468	PREDICTED: uncharacterized protein LOC10	0.805	0.848	0.475	1e-101
449439033	477	PREDICTED: uncharacterized protein LOC10	0.657	0.679	0.495	2e-85
449483332	479	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.657	0.676	0.488	1e-82
15240938	434	rhomboid-related intramembrane serine pr	0.675	0.767	0.462	5e-81

>gi|147826430|emb|CAN66509.1| hypothetical protein VITISV_003619 [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/574 (48%), Positives = 346/574 (60%), Gaps = 91/574 (15%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 1   MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 57  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236

Query: 220 ETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 278
           ETS+LYLI ILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296

Query: 279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 338
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH------ 392
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H      
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416

Query: 393 ----------------------------------LGAA------FTD-------LGGNTS 405
                                             LG A      + D       LGGN S
Sbjct: 417 ASAELEALMMATGRGGRSLMGPLLAVNFVVYLIILGLAGWSLDKYIDGEQNHPHLGGNPS 476

Query: 406 TWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAA----------SSLAILSCFVCKE 455
           T F+L FAL  G  G C V AG +H +AW S+SLAAA          ++LAI    VCKE
Sbjct: 477 TSFMLIFALIAGVTGACCVVAGFLHYKAWTSDSLAAAASSAIISWAITALAI--GLVCKE 534

Query: 456 IILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHA 489
           IILGG+RGKRLQTLEA  ++S +SQLLYL L+HA
Sbjct: 535 IILGGYRGKRLQTLEALIIVSTVSQLLYLVLLHA 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127432|ref|XP_002329276.1| predicted protein [Populus trichocarpa] gi|222870730|gb|EEF07861.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 279/428 (65%), Gaps = 32/428 (7%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPN 60
           MA+V +C KIP K+  L I  + RQ+ERG  C C +  +   + S S ++ + W  IY  
Sbjct: 1   MAVVPICYKIPCKDHTLSIRNLARQHERGLLCACSAFAQGGSYLSISSDVQRNWPVIYTT 60

Query: 61  QDV--------------------AELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAK 100
            DV                      L  Q  M     H+    +  +++E L +  CA+K
Sbjct: 61  ADVLVKVKTRGRTNASKGTILNQGLLKFQSVMD--VPHLHKIHR--TSRENLSVACCASK 116

Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
           S  +E Q+R+L+SY  KL+D+  + SS+S  E  +      +IN K EL+ L+AYL K++
Sbjct: 117 SGTNEKQLRLLDSYFGKLQDNVSEPSSDSCNERTDFLDTRVQINVKEELEYLNAYLDKVD 176

Query: 161 TDAKFS-------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
            DA           D+ TE N +   +S+SK S+R    +L+ +R LRN+       R  
Sbjct: 177 KDANLENNVSSTFNDEATEENPIVKPISVSKESRRDNEERLRSFRNLRNQYVESGSRRSE 236

Query: 214 ALQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 272
           AL++  ETS  YLI  L SI++AVFLFEIASP+RNSEF  FSLPLLYGAKINELILVGEW
Sbjct: 237 ALEQNYETSYFYLIGTLASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEW 296

Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
           WRLVTPMFLHSG FHV L  W+LLTFGP+VC+ YG FTFFLIY LGGISGNLTSFLHTPE
Sbjct: 297 WRLVTPMFLHSGAFHVVLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPE 356

Query: 333 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 392
           PTVGGTGPVFAIIGAWLIYQ QNKD+I+KD  +RMFQKA+++TA+SFI+S+FGP+D W H
Sbjct: 357 PTVGGTGPVFAIIGAWLIYQNQNKDVISKDDFDRMFQKAVITTAVSFILSHFGPIDDWTH 416

Query: 393 LGAAFTDL 400
           LGA  T +
Sbjct: 417 LGAVLTGI 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451989|ref|XP_002279924.1| PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/423 (52%), Positives = 278/423 (65%), Gaps = 26/423 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 1   MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 56

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 57  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 116

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 117 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 176

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 177 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 236

Query: 220 ETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 278
           ETS+LYLI ILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 237 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 296

Query: 279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 338
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 297 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 356

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 357 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 416

Query: 399 DLG 401
            + 
Sbjct: 417 GIA 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087301|emb|CBI33675.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/423 (52%), Positives = 278/423 (65%), Gaps = 26/423 (6%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSR-FSSTSDNMCK------- 52
           MA+V +C K+  K+Q  PI KI+RQ+E+GF   CI + E S  FSS    MC        
Sbjct: 38  MAVVPVCHKMSYKDQAYPIQKIIRQSEKGFGWDCIGIQEGSGCFSS----MCSDSTGISI 93

Query: 53  ------RWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSEC 106
                   RS+   +   EL    +MS   S + S S+ AS +E L  V  A++SS +E 
Sbjct: 94  KLKARVHNRSLLQFRHRTELHGLHRMSYTESCLRSISENASQRENLGTVWSASESSTNEK 153

Query: 107 QIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFS 166
           Q+R+L+ Y  KL ++   +S  SS +  EL  +SG+   K  L SL+ +LGK+N DA   
Sbjct: 154 QLRLLDLYFGKLHNEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSE 213

Query: 167 T-------DQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTE 219
                   D+  E        SI++       GKLK Y ELRNKDG    +     Q  +
Sbjct: 214 NYLPSSPCDKIDEDKHDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYD 273

Query: 220 ETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTP 278
           ETS+LYLI ILVSI++AV LFE+ASPIRNS+    SLPL+YGAKIN+LILVGEWWRLVTP
Sbjct: 274 ETSDLYLISILVSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTP 333

Query: 279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGT 338
           MFLHSG+FHVAL CW LLTFGPQVC+ YG FTFFLIY LGGISGNLTSFLHTP+ TVGGT
Sbjct: 334 MFLHSGIFHVALGCWVLLTFGPQVCRGYGSFTFFLIYILGGISGNLTSFLHTPDLTVGGT 393

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFAIIGAW+I+Q QNKD+IAKDVSE M+ KAI++TALS I+S+F P+D W H GAAFT
Sbjct: 394 GPVFAIIGAWVIHQIQNKDVIAKDVSESMYHKAIIATALSSILSHFCPIDDWTHFGAAFT 453

Query: 399 DLG 401
            + 
Sbjct: 454 GIA 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551392|ref|XP_002516742.1| conserved hypothetical protein [Ricinus communis] gi|223544115|gb|EEF45640.1| conserved hypothetical protein [Ricinus communis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/339 (58%), Positives = 245/339 (72%), Gaps = 26/339 (7%)

Query: 70  WKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSES 129
           W M    S +GS + K S  EK               Q+R+L+SY  KL+ D+ Q S++S
Sbjct: 32  WSMKGENSSMGSHASKTSINEK---------------QLRLLDSYFGKLQGDANQPSTDS 76

Query: 130 SGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-------STDQTTERNLVAAQLSI 182
           S E  +L ++S EIN   EL SL++YL KL+ D+         S D TTE   +   +S+
Sbjct: 77  SDETTKLGNKSKEINPTEELQSLNSYLDKLSKDSNLENYVSSTSDDLTTESEKL---VSV 133

Query: 183 SKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLI-ILVSIDVAVFLFEI 241
            + SKRG   K K + +LR KD  R L R  ALQ+ +ETS+LYL  ILVSI++AVFLFE+
Sbjct: 134 YEDSKRGEEEKPKSFVKLREKDANRGLRRSQALQQNDETSDLYLTSILVSINIAVFLFEL 193

Query: 242 ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 301
           ASP+RNSEF  F+LPLLYGAKIN+LILVGEWWRL+TPMFLHSG+FH+AL CW+LLTFGPQ
Sbjct: 194 ASPVRNSEFELFTLPLLYGAKINDLILVGEWWRLLTPMFLHSGVFHMALGCWSLLTFGPQ 253

Query: 302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAK 361
           V + YG FTF LI+ LGGISGNLTSFLHTPEPTVGGTGP+FAIIGAWL++Q QNKD+IAK
Sbjct: 254 VSRGYGSFTFVLIFILGGISGNLTSFLHTPEPTVGGTGPIFAIIGAWLVFQMQNKDVIAK 313

Query: 362 DVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDL 400
           D+SE MFQKAI+ T LSFI+S+FGP+D W HLGA  T +
Sbjct: 314 DISESMFQKAIIITGLSFILSHFGPIDDWTHLGATLTGI 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/428 (48%), Positives = 273/428 (63%), Gaps = 30/428 (7%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRFSSTSDNMCK------RW 54
           MA   +  K P K+Q LP   I+RQNE+ F   C +L  +   SS    +C+      + 
Sbjct: 1   MAAFPMFYKTPYKDQNLPTQNIMRQNEKRFMLECDNLHRS--ISSIPGQICRSCQPWNKV 58

Query: 55  RSIYPNQDVAELPVQWKM--------SNITSHVGSFSKKA------STKEKLRMVRCAAK 100
            +I    ++ E  V   +         N+T   GS S  +      S  E L  V C+A 
Sbjct: 59  NNILTKSNIKEKNVTRSILHDRCSLHKNVTKLCGSDSHLSLIQGCYSKTENLSRVWCSAS 118

Query: 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLN 160
           SS +E Q+R L+SY  KL+D++  ++ +SS ++ ++H       +KT L+SLD YLGKLN
Sbjct: 119 SSSTEKQLRSLDSYFGKLQDNAKLSTFDSSHKVIQVHHIDDHARSKTGLESLDEYLGKLN 178

Query: 161 TDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLA 214
             A          +  +E NL A + S++K  +R    K   Y ++    GV      + 
Sbjct: 179 RGANQEPHVPSYVENRSEENL-APKRSLTKDIERSNFRKRNAYVDIGRLKGVHGPRSAID 237

Query: 215 LQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWW 273
            Q+  ETS+LYLI IL S+++AVFLFEIASPIRNS+   FS+PLLYGAKIN LI+VGEWW
Sbjct: 238 SQQHVETSSLYLIGILASVNIAVFLFEIASPIRNSDLELFSIPLLYGAKINHLIMVGEWW 297

Query: 274 RLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP 333
           RLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N  SFLHTP+P
Sbjct: 298 RLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLHTPDP 357

Query: 334 TVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHL 393
           TVGGTGPVFAIIGAWL+YQ QNKD+IA D SE +F KA++ TAL FI+S+FGP+D W+H 
Sbjct: 358 TVGGTGPVFAIIGAWLMYQIQNKDVIASDASENLFHKAVIMTALIFILSHFGPIDEWSHF 417

Query: 394 GAAFTDLG 401
           GAAF+ + 
Sbjct: 418 GAAFSGMA 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573948|ref|XP_003555116.1| PREDICTED: uncharacterized protein LOC100815930 [Glycine max]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/429 (47%), Positives = 274/429 (63%), Gaps = 32/429 (7%)

Query: 1   MAMVQLCCKIPSKEQLLPIPKIVRQNERGFKCHCISLTENSRF-SSTSDNMCK------R 53
           MA   +  K P K+Q LP   ++RQNE+ F   C ++    RF SST   +C+      +
Sbjct: 1   MAAFPMFYKTPYKDQNLPTQNVMRQNEKRFMYECDNM---KRFISSTPGQICRSSQPWNK 57

Query: 54  WRSIYPNQDVAELPVQWKM--------SNIT------SHVGSFSKKASTKEKLRMVRCAA 99
             ++    +  E  V   +         N+T      SH+    +  S  E L  V C+A
Sbjct: 58  VNNVLTKSNTKERNVPRSILHGRCSLHKNVTKLCGSDSHLSLIKECYSKTENLSRVWCSA 117

Query: 100 KSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKL 159
            SS +E Q+R L+SY  KL+D++   + +SS ++ +LH    +  +KT L+SL+ YLGKL
Sbjct: 118 GSSSTEKQLRSLDSYFGKLQDNAKLRTFDSSHKVIQLHHIDRQARSKTGLESLEEYLGKL 177

Query: 160 NTDAKFS------TDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDL 213
           N +A          +  +E NL A + S+SK  +R    K   + ++R    +      +
Sbjct: 178 NHEANQEPCVPSYVENHSEENL-APKRSLSKDIERSNFRKQNAFVDIRRLKRLHDPRSAI 236

Query: 214 ALQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEW 272
             Q+  ETS+LYLI IL S+++AVFLFEIASPIR S+   FS+PLLYGAKIN LI+VGEW
Sbjct: 237 DSQQQVETSSLYLIGILASVNIAVFLFEIASPIRTSDLELFSIPLLYGAKINHLIMVGEW 296

Query: 273 WRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE 332
           WRLVTPMFLH+G+FH+A+SCWALLTFGPQVCK YG FTFFLIY LGG++ N TSFLHT +
Sbjct: 297 WRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFTSFLHTSD 356

Query: 333 PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAH 392
           PTVGGTGPVFAIIGAWL+YQ QNK +IA D SE +FQKA++ TAL FI+S+FGP+D W+H
Sbjct: 357 PTVGGTGPVFAIIGAWLMYQIQNKHVIASDASENLFQKAVIMTALIFILSHFGPIDEWSH 416

Query: 393 LGAAFTDLG 401
            GAAF+ + 
Sbjct: 417 FGAAFSGMA 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439033|ref|XP_004137292.1| PREDICTED: uncharacterized protein LOC101206746 [Cucumis sativus]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/361 (49%), Positives = 233/361 (64%), Gaps = 37/361 (10%)

Query: 70  WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
           W++ +  S V + S +A    +     L  VRC+                  + S +E Q
Sbjct: 50  WEIHDNDSSVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109

Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
           +R L SY  +L+    + + +S  +++ L +  G+  AK EL  LDAY  K++ D     
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVLDT--GQFKAKKELQLLDAYFQKVDKDTGLHK 167

Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
               S D+  E  LV    + S S  R    +L+  R ++    + +S+     LQ  EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDRVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222

Query: 221 TSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 279
             +LYLI  LVSI++AVFLFE+ASP++NSE   FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282

Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTG 339
           FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGGTG
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCREYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGTG 342

Query: 340 PVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTD 399
           PVFA+IGAWL YQFQNKD++ KDVS++MF KA+++  +S I+SN GP+D W H GAAF+ 
Sbjct: 343 PVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFSG 402

Query: 400 L 400
           +
Sbjct: 403 M 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483332|ref|XP_004156558.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206746 [Cucumis sativus]

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/362 (48%), Positives = 231/362 (63%), Gaps = 38/362 (10%)

Query: 70  WKMSNITSHVGSFSKKASTKEK-----LRMVRCAA-----------------KSSDSECQ 107
           W++ +  S V + S +A    +     L  VRC+                  + S +E Q
Sbjct: 50  WEIHDNDSPVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQ 109

Query: 108 IRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKF-- 165
           +R L SY  +L+    + + +S  +++ L   +G+  AK EL  LDAY  K++ D     
Sbjct: 110 LRSLGSYFGRLQGVGDRKNLDSLKKMKVL--DTGQFKAKKELQLLDAYFQKVDKDTGLHK 167

Query: 166 ----STDQTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGV-RSLERDLALQRTEE 220
               S D+  E  LV    + S S       +L+  R ++    + +S+     LQ  EE
Sbjct: 168 HPLSSFDEQEEGKLV---FTTSPSEDHVKDDELQ-IRHVKLSGMIHKSMPNKTQLQE-EE 222

Query: 221 TSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPM 279
             +LYLI  LVSI++AVFLFE+ASP++NSE   FSLP LYGAKINELILVGEWWRLVTPM
Sbjct: 223 VCDLYLISALVSINIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 282

Query: 280 FLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGG-T 338
           FLHSG+ HVALSCW LLTFG QVC+ YGPFTFFLIY LGG+SGNLTSFLHTP+PTVGG  
Sbjct: 283 FLHSGVLHVALSCWTLLTFGRQVCRXYGPFTFFLIYVLGGVSGNLTSFLHTPDPTVGGRX 342

Query: 339 GPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
           GPVFA+IGAWL YQFQNKD++ KDVS++MF KA+++  +S I+SN GP+D W H GAAF+
Sbjct: 343 GPVFAMIGAWLSYQFQNKDVMTKDVSDKMFLKALVAAVISSILSNIGPIDEWTHTGAAFS 402

Query: 399 DL 400
            +
Sbjct: 403 GM 404

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240938|ref|NP_198667.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|145334671|ref|NP_001078681.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|10176819|dbj|BAB10141.1| unnamed protein product [Arabidopsis thaliana] gi|46518449|gb|AAS99706.1| At5g38510 [Arabidopsis thaliana] gi|110741692|dbj|BAE98792.1| hypothetical protein [Arabidopsis thaliana] gi|332006944|gb|AED94327.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana] gi|332006945|gb|AED94328.1| rhomboid-related intramembrane serine protease-like protein [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/348 (46%), Positives = 223/348 (64%), Gaps = 15/348 (4%)

Query: 49  NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
           N  +R+ S   ++ +AE     +   + S++ S     S + +L +VR ++++  ++ ++
Sbjct: 21  NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80

Query: 109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
           ++L+SY  KL++D  + S  +  +I+    R  E+N   ELDSL AYL KL  DAK    
Sbjct: 81  KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132

Query: 169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLI- 227
               + LV++ L + KS       KL+      N    +  + +    + E+T N Y + 
Sbjct: 133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186

Query: 228 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 287
           IL SI+V V LFE A+P+RN+  G  SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct: 187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246

Query: 288 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 347
           VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN  SFLHT +PTVGGTGP FA+IGA
Sbjct: 247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306

Query: 348 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGA 395
           WL+ Q QNK++I  +  E +FQKAI+ T    I+S+FGP+D W +LGA
Sbjct: 307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGA 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
TAIR|locus:2159808	434	AT5G38510 [Arabidopsis thalian	0.675	0.767	0.462	1.9e-76
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.340	0.343	0.388	9.4e-20
TAIR|locus:2032940	343	RBL10 "RHOMBOID-like protein 1	0.405	0.583	0.261	3.2e-15
UNIPROTKB|Q81VF8	190	BAS0235 "Rhomboid family prote	0.223	0.578	0.344	5.3e-13
TIGR_CMR|BA_0249	190	BA_0249 "rhomboid family prote	0.223	0.578	0.344	5.3e-13
UNIPROTKB|Q74DX7	279	GSU1188 "Rhomboid-related memb	0.310	0.548	0.309	1.8e-12
TIGR_CMR|GSU_1188	279	GSU_1188 "rhomboid family prot	0.310	0.548	0.309	1.8e-12
UNIPROTKB|P46116	281	aarA "Rhomboid protease AarA"	0.399	0.701	0.293	1.5e-11
UNIPROTKB|G4N225	558	MGG_07535 "Rhomboid family mem	0.255	0.225	0.294	1.3e-10
UNIPROTKB|Q3ADW0	236	CHY_0820 "Rhomboid family prot	0.247	0.516	0.318	8e-10

TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 161/348 (46%), Positives = 223/348 (64%)

Query:    49 NMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSKKASTKEKLRMVRCAAKSSDSECQI 108
             N  +R+ S   ++ +AE     +   + S++ S     S + +L +VR ++++  ++ ++
Sbjct:    21 NGLRRFSSGLKHRTMAEATTLGRDCRMKSYMKSIPYCRSPRRRLCLVRASSENKITKQRL 80

Query:   109 RILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTD 168
             ++L+SY  KL++D  + S  +  +I+    R  E+N   ELDSL AYL KL  DAK    
Sbjct:    81 KLLDSYFGKLQNDDEKPSISTGDDID----RKAELNVNEELDSLSAYLDKLQKDAK---- 132

Query:   169 QTTERNLVAAQLSISKSSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLI- 227
                 + LV++ L + KS       KL+      N    +  + +    + E+T N Y + 
Sbjct:   133 ---SKGLVSSTLDVVKSEGGSVASKLRKTGIENNNSPFQQFDDE---DQAEDTLNFYAVS 186

Query:   228 ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFH 287
             IL SI+V V LFE A+P+RN+  G  SLPLLYGAKIN+LIL GEWWRLVTPMFLHSG+ H
Sbjct:   187 ILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPMFLHSGIPH 246

Query:   288 VALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGA 347
             VALS WALLTFGP+VC+ YG FTF LIY LGG+SGN  SFLHT +PTVGGTGP FA+IGA
Sbjct:   247 VALSSWALLTFGPKVCRDYGLFTFCLIYILGGVSGNFMSFLHTADPTVGGTGPAFALIGA 306

Query:   348 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGA 395
             WL+ Q QNK++I  +  E +FQKAI+ T    I+S+FGP+D W +LGA
Sbjct:   307 WLVDQNQNKEMIKSNEYEDLFQKAIIMTGFGLILSHFGPIDDWTNLGA 354

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 260 (96.6 bits), Expect = 9.4e-20, P = 9.4e-20
 Identities = 70/180 (38%), Positives = 96/180 (53%)

Query:   225 YLIILVS-IDVAVFLFEIA-----SPIR-NSEFGFFSLPLL-YGAKINELILVGEWWRLV 276
             Y II +S ID+ +F++EI       P + N  FG  S  LL  GAK + LIL GEWWR  
Sbjct:   238 YFIIAISLIDLVMFIWEIIYNGGFEPWKTNPWFGPNSYTLLDVGAKYSPLILNGEWWRFF 297

Query:   277 TPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPT-V 335
             TP+FLH G+FH  ++    L  G Q+ ++YG      IY L G++GNL S +  P    V
Sbjct:   298 TPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQV 357

Query:   336 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 394
             G +G +F  +G  L    +N  ++AK      F   + S   SF +  F P VD +AHLG
Sbjct:   358 GASGAIFGFLGVLLTDLIRNWSVLAKPWLN--FGSLLFSIITSFAVGLFLPGVDNFAHLG 415

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 58/222 (26%), Positives = 104/222 (46%)

Query:   196 GYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASPIRNSEFGFFSL 255
             G   L  + G          +R       +  +L++I+V +++ +IAS  +         
Sbjct:   100 GESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGK--------- 150

Query:   256 PLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIY 315
              L +GAKIN LI  G+ WRL T   LH+   H+ ++C++L + GP      GP  F  +Y
Sbjct:   151 VLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVY 210

Query:   316 TLGGIS-------GNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMF 368
                 ++       G+  S+     P+VG +G +F ++G+  ++  ++K ++ +  +E + 
Sbjct:   211 LTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMV-RGGNEDLM 269

Query:   369 QKAILSTALSFIISNFGP-VDTWAHLGAAFTDLGGNTSTWFL 409
             Q A +  AL+  +      +D W H+G     LGG   TW L
Sbjct:   270 QIAQI-IALNMAMGLMSRRIDNWGHIGGL---LGGTAMTWLL 307

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0031969 "chloroplast membrane" evidence=IDA

UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)]

 Score = 179 (68.1 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 40/116 (34%), Positives = 61/116 (52%)

Query:   252 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 311
             FF  P+   A  +E I  GEWWRL+T +F+H  L H   +   L   G  + K  G F+F
Sbjct:    30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86

Query:   312 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQN-KDLIAKDVS 364
              +I+ L GI GN+ S+L  P   +  G +G +F ++GA L   +   +    KD++
Sbjct:    87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIA 142

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0249 BA_0249 "rhomboid family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 179 (68.1 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 40/116 (34%), Positives = 61/116 (52%)

Query:   252 FFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTF 311
             FF  P+   A  +E I  GEWWRL+T +F+H  L H   +   L   G  + K  G F+F
Sbjct:    30 FFLFPM---AAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSF 86

Query:   312 FLIYTLGGISGNLTSFLHTPEPTV--GGTGPVFAIIGAWLIYQFQN-KDLIAKDVS 364
              +I+ L GI GN+ S+L  P   +  G +G +F ++GA L   +   +    KD++
Sbjct:    87 IIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIA 142

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74DX7 GSU1188 "Rhomboid-related membrane protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 51/165 (30%), Positives = 77/165 (46%)

Query:   238 LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLT 297
             LF   SP RNS      L LL    +  +   G +W L++  +LH GL H+  +  AL  
Sbjct:    80 LFSALSPGRNS------LLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQ 133

Query:   298 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKD 357
               P V + YG +  F IYTLGG++G + S+L     T+G +  + A+IG+ L Y      
Sbjct:   134 IAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGG 193

Query:   358 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGG 402
             L  + V + ++   +       I+     +D W H G     LGG
Sbjct:   194 LYGQAVFKEVWGWVVGLFLFGLIVPG---IDNWGHGGGI---LGG 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1188 GSU_1188 "rhomboid family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 51/165 (30%), Positives = 77/165 (46%)

Query:   238 LFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLT 297
             LF   SP RNS      L LL    +  +   G +W L++  +LH GL H+  +  AL  
Sbjct:    80 LFSALSPGRNS------LLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQ 133

Query:   298 FGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKD 357
               P V + YG +  F IYTLGG++G + S+L     T+G +  + A+IG+ L Y      
Sbjct:   134 IAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGG 193

Query:   358 LIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGG 402
             L  + V + ++   +       I+     +D W H G     LGG
Sbjct:   194 LYGQAVFKEVWGWVVGLFLFGLIVPG---IDNWGHGGGI---LGG 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P46116 aarA "Rhomboid protease AarA" [Providencia stuartii (taxid:588)]

 Score = 180 (68.4 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 67/228 (29%), Positives = 100/228 (43%)

Query:   227 IILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
             + LV +++AV+ ++I  ASP+ + E       +L+GA I +L L G+WWR    M LHS 
Sbjct:    25 LTLVLLNIAVYFYQIVFASPLDSRESNL----ILFGANIYQLSLTGDWWRYPISMMLHSN 80

Query:   285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNL-----------TSFLHTPEP 333
               H+A +C AL   G    ++YG F    IY + GI   L            S L T   
Sbjct:    81 GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDST 140

Query:   334 T-----VGGTGPVFAIIGAWLIYQFQ---NKDLIAKDVSERM-FQ--KAILSTALSFIIS 382
                   VG +G +  I  A +IY  +   NK      +  R  +Q    I   AL+ I  
Sbjct:   141 VYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLING 200

Query:   383 NFGPVDTWAHLGAAFTDLGGNTS-TWFLLTFALTTGAIGVCSVTAGLM 429
                 VD  AH+G A   +G   S  + L+   L    + +  + A L+
Sbjct:   201 LQSGVDNAAHIGGAI--IGALISIAYILVPHKLRVANLCITVIAASLL 246

GO:0008236 "serine-type peptidase activity" evidence=IMP

UNIPROTKB|G4N225 MGG_07535 "Rhomboid family membrane protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 180 (68.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 40/136 (29%), Positives = 73/136 (53%)

Query:   271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT--SFL 328
             +W+R +TP+F+H+GL H+  +    LT G ++ ++ G   FFL+Y   GI G +   ++ 
Sbjct:   297 QWFRFITPIFMHAGLIHIGFNMLLQLTLGREMEQAIGSIRFFLVYMSAGIFGFVLGGNYA 356

Query:   329 HTPEPTVGGTGPVFAIIGAWLI---YQFQNKDLIAKDVSERMFQKAILSTALSFIISNFG 385
                 P+ G +G +F +I   LI   Y ++++    KD+   +F    L  A+SF++    
Sbjct:   357 GAGTPSTGASGSLFGVIALTLIDLLYSWKDRKNPVKDL---LF--IFLDIAISFVLGLLP 411

Query:   386 PVDTWAHLGAAFTDLG 401
              +D ++H+G     LG
Sbjct:   412 GLDNFSHIGGFLMGLG 427

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=IMP

GO:0030437 "ascospore formation" evidence=IMP

GO:0048315 "conidium formation" evidence=IMP

UNIPROTKB|Q3ADW0 CHY_0820 "Rhomboid family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 154 (59.3 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
 Identities = 43/135 (31%), Positives = 66/135 (48%)

Query:   227 IILVSIDVAVFLFEIASPIRNSE-----FGFFSLPLLYGAK---INELILVGEWWRLVTP 278
             I+++  +V VF+F+I+ P   SE     FGF  L L  G +   ++E+I  G    L T 
Sbjct:    18 ILIILANVLVFIFQISLPRETSELFLHTFGFTPLRLTEGLRQGLLSEIIWSGV--TLFTS 75

Query:   279 MFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLH---TPEPTV 335
             MFLH    H+  + WAL  FG  V +  G   F L Y L GI      ++    +    V
Sbjct:    76 MFLHGSFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIVAV 135

Query:   336 GGTGPVFAIIGAWLI 350
             G +G +  ++GA+ +
Sbjct:   136 GASGAIAGVMGAYFV 150

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	493
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	3e-30
pfam05512	142	pfam05512, AWPM-19, AWPM-19-like family	2e-25
COG0705	228	COG0705, COG0705, Membrane associated serine prote	8e-21
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	1e-10
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	0.001

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  114 bits (288), Expect = 3e-30
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 266 LILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLT 325
           L+  G+ WRL+T MFLH+G  H+  +  ALL FG  + +  G   F L+Y L G++G+L 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 326 SFLHTPE--PTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISN 383
           S+L +P   P+VG +G +F ++GA L+   +N+ L+            +    L+ ++  
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILL--FNFPGALLLLLGIILLNLLLGF 118

Query: 384 FGPVDTWAHLGAAFT 398
              +  +AHLG    
Sbjct: 119 LPGISNFAHLGGLIA 133

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|191295 pfam05512, AWPM-19, AWPM-19-like family

 Score =  101 bits (253), Expect = 2e-25
 Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 9/96 (9%)

Query: 402 GNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSC--------FVC 453
           GN +T F + FAL  G +G  S  +GL H+R+WR ESLAAA+S  +++           C
Sbjct: 46  GNAATGFFVIFALLAGVVGAASKLSGLSHVRSWRPESLAAAASAGLVAWALTALAMGLAC 105

Query: 454 KEIILGGHRGKRLQTLEAFAVISLLSQLLYLGLVHA 489
           KEI LGG RG RL+TLEAF +I   +QLLY+  +HA
Sbjct: 106 KEIHLGG-RGARLRTLEAFTIILSATQLLYILAIHA 140

Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing. Length = 142

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 90.6 bits (225), Expect = 8e-21
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 227 IILVSIDVAVFLFEI--ASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
           + L+ +++ VFL E+             F L  LY   +   +   + WRL+T +FLH+G
Sbjct: 21  LFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG 80

Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPV 341
             H+  +  AL  FG  + +  G   F L Y L G+   L   L  P+   P++G +G +
Sbjct: 81  FLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAI 140

Query: 342 FAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTAL-SFIISNFGP---VDTWAHLGAAF 397
           F ++GA+ +     + L+      R     IL   L S           V   AHLG   
Sbjct: 141 FGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLI 200

Query: 398 T 398
            
Sbjct: 201 G 201

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%)

Query: 224 LYLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHS 283
           +  II VSI  A FL    S           L +  GA +   I  GE  RL+ P+FLH+
Sbjct: 65  IVFIISVSIKPADFLTPSDS-----------LLVTLGANVASRIKQGEIHRLILPIFLHA 113

Query: 284 GLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEP-TVGGTGPVF 342
            +FH   + +  L  G  + K+YG     ++Y L GI GN+ S   T  P  VG +    
Sbjct: 114 NIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGM 173

Query: 343 AIIG--------AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIIS---NFGPVDTWA 391
            ++G         W + + +          ER+    I  + +SF      N   +D   
Sbjct: 174 GLLGIVTSELILLWHVIRHR----------ERVVFNIIFFSLISFFYYFTFNGSNIDHVG 223

Query: 392 HLG 394
           HLG
Sbjct: 224 HLG 226

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 265 ELILVGEWWRLVTPMFLHSGLFHVALSCWALL 296
             IL GEWWRL+T  F+H   +H+ ++   LL
Sbjct: 9   AAILEGEWWRLLTGHFVHLNWWHLLMNLAGLL 40

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
PRK10907	276	intramembrane serine protease GlpG; Provisional	100.0
PTZ00101	278	rhomboid-1 protease; Provisional	99.96
PF05512	142	AWPM-19: AWPM-19-like family; InterPro: IPR008390	99.94
COG0705	228	Membrane associated serine protease [Amino acid tr	99.9
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.9
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.8
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.73
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.7
PF12122	101	DUF3582: Protein of unknown function (DUF3582); In	99.6
KOG2980	310	consensus Integral membrane protease of the rhombo	98.34
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.2
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	97.85
KOG0858	239	consensus Predicted membrane protein [Function unk	97.43
KOG4463	323	consensus Uncharacterized conserved protein [Funct	95.22
COG5291	313	Predicted membrane protein [Function unknown]	93.61
KOG2890	326	consensus Predicted membrane protein [Function unk	93.57

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=100.00  E-value=3.6e-46  Score=373.68  Aligned_cols=251  Identities=14%  Similarity=0.100  Sum_probs=210.9

Q ss_pred             hhhhccCCChhHHHHHHHHHhhcCCcceeecCccc-----hhhhHHHHHhhhh--hccCCCCCcchhhHhhhcccCCcc-
Q 011129          137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTT-----ERNLVAAQLSISK--SSKRGYMGKLKGYRELRNKDGVRS-  208 (493)
Q Consensus       137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~-----de~~~~~~~~e~~--~~~p~~~~~~~rY~~as~~~g~~~-  208 (493)
                      |+++.+++|||+||+|+|||++|||+++++++++.     ||++.+++++|++  ++||.|+    ||++++|+.++++ 
T Consensus         1 M~~~~~~~~~~~a~~f~dyl~~~~i~~~~~~~~~~~lwl~d~~~~~~~~~~~~~f~~~p~~~----~y~~asw~~g~~~~   76 (276)
T PRK10907          1 MLMITSFSNPRLAQAFVDYMATQGVILTIQQHNQSDIWLADESQAERVRAELARFLENPADP----RYLAASWQSGHTNS   76 (276)
T ss_pred             CcchhcCCCHHHHHHHHHHHHHCCCcEEEecCCceEEEecCHHHHHHHHHHHHHHHhCCCch----hHHhcccccCCCCC
Confidence            78899999999999999999999999999854443     8899999999999  9999999    9999999988643 


Q ss_pred             ---ccchHHhhhcccccchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCC
Q 011129          209 ---LERDLALQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG  284 (493)
Q Consensus       209 ---~~~~~~~~~~~~~~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s  284 (493)
                         ++++..+++.+.+.. |+| +++++|++||+++.+.+.. .....+.+|    .   .....+||||++|++|+|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~-p~T~~li~i~i~vf~l~~~~~~~-~~~~~l~~~----~---~~~~~~q~WRl~T~~flH~~  147 (276)
T PRK10907         77 GLRYRRFPFLATLRERAG-PLTLGVMIACVVVFILMQILGDQ-TVMLWLAWP----F---DPSLKFELWRYFTHALLHFS  147 (276)
T ss_pred             CcccccchHHHhhccCCC-CHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcc----c---cccccCCcHHHHhHHHHhCC
Confidence               566777777765554 677 9999999999998765532 111121111    1   12357999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhh
Q 011129          285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVS  364 (493)
Q Consensus       285 ~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~  364 (493)
                      ++||+|||+++|++|..+|+.+|+++++.+|++++++||++++++.+...+|+||+|||++|+.+....+.+.. ...+|
T Consensus       148 ~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~~-~~~lp  226 (276)
T PRK10907        148 LLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQS-GIYLP  226 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcccccc-chhhh
Confidence            99999999999999999999999999999999999999999999887778899999999999988877666554 34567


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCChhhhhhHhhhhhccc
Q 011129          365 ERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLG  401 (493)
Q Consensus       365 ~~l~~~~li~l~l~~i~~~~~~Is~~AHLgGll~GLl  401 (493)
                      ..++.++++++++++.....++|+|.||++|+++|++
T Consensus       227 ~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll  263 (276)
T PRK10907        227 RGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLA  263 (276)
T ss_pred             HHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHH
Confidence            7788888888888877555578999999999999963

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.96  E-value=6.8e-28  Score=241.75  Aligned_cols=185  Identities=25%  Similarity=0.326  Sum_probs=136.2

Q ss_pred             HhhhcccccchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHH
Q 011129          214 ALQRTEETSNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSC  292 (493)
Q Consensus       214 ~~~~~~~~~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNm  292 (493)
                      ....+++-+.+.+| .++++++++|++...................+|+..++.+.++||||++|++|+|.|++|+++||
T Consensus        43 ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm  122 (278)
T PTZ00101         43 LNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV  122 (278)
T ss_pred             HHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHH
Confidence            34455666777888 99999999999876643221100001134567888878888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhcCC-CceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Q 011129          293 WALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP-EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKA  371 (493)
Q Consensus       293 l~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~-~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~  371 (493)
                      ++++.+|..+|+.+|++|++.+|+++|++|++++.++.+ ...+||||++||++|++.......+.....  +.+....+
T Consensus       123 ~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~--~~~~~~~~  200 (278)
T PTZ00101        123 FFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRH--RERVVFNI  200 (278)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHH
Confidence            999999999999999999999999999999999988765 368999999999999987654444332211  11111111


Q ss_pred             HHHHHHHhh--h-hcCCChhhhhhHhhhhhcc
Q 011129          372 ILSTALSFI--I-SNFGPVDTWAHLGAAFTDL  400 (493)
Q Consensus       372 li~l~l~~i--~-~~~~~Is~~AHLgGll~GL  400 (493)
                      ++.+++.++  . ...+++|++||+||+++|+
T Consensus       201 i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~  232 (278)
T PTZ00101        201 IFFSLISFFYYFTFNGSNIDHVGHLGGLLSGI  232 (278)
T ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            111111111  1 1237799999999999996

>PF05512 AWPM-19: AWPM-19-like family; InterPro: IPR008390 Members of this family are 19 kDa membrane proteins

Probab=99.94  E-value=1.7e-27  Score=212.65  Aligned_cols=90  Identities=54%  Similarity=0.817  Sum_probs=87.8

Q ss_pred             cCCchhhHHHHHHHhhhhhhHHHHHHhhhhhhccccchHHHHHHhhHhhh--------hcccceeeccccCCccchhhHH
Q 011129          401 GGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSC--------FVCKEIILGGHRGKRLQTLEAF  472 (493)
Q Consensus       401 lg~~~~~~~i~f~l~aG~vg~~~~l~~~~~~~~w~~~~l~a~~~~~~ls~--------~ack~i~l~~~r~~~l~~~e~~  472 (493)
                      +||.+|+|+++|+++|||||++++++|+.|++.|+.|+++||++.++++|        +|||||++|+ ||+||||||+|
T Consensus        45 ~GN~AT~ffv~faLlAgVVG~aS~l~G~~h~r~W~~~sLaaAaa~a~iAW~lTlLAmGlACKeI~~g~-r~~rLrtlEaf  123 (142)
T PF05512_consen   45 MGNAATGFFVIFALLAGVVGAASVLAGLHHVRSWRSESLAAAAASALIAWALTLLAMGLACKEIHLGG-RNWRLRTLEAF  123 (142)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhHheeeecC-ccchhhHHHHH
Confidence            69999999999999999999999999999999999999999999999999        6999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 011129          473 AVISLLSQLLYLGLVHAWF  491 (493)
Q Consensus       473 ~ii~~~~ql~~~~~~~~~~  491 (493)
                      +|||+.|||+|++++|+|.
T Consensus       124 ~IIl~~tQLly~l~lH~g~  142 (142)
T PF05512_consen  124 TIILSATQLLYLLALHAGV  142 (142)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            9999999999999999983

The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [].

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.90  E-value=1.7e-23  Score=204.17  Aligned_cols=178  Identities=26%  Similarity=0.454  Sum_probs=139.5

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhh-cC--ccceeeecccccCCHHHHHHHHHHHHHH
Q 011129          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELIL-VG--EWWRLVTPMFLHSGLFHVALSCWALLTF  298 (493)
Q Consensus       223 ~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~-~g--q~WRl~Ts~FlH~s~~HLlfNml~L~~~  298 (493)
                      .++.| .++.+|+++|+++...+.... .........++........ ..  |+||++|++|+|.|+.|+++||+++|.+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~f   94 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAI-FLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVF   94 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHH-HHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            46778 999999999999877654321 1110000001111111111 11  8999999999999999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHHHhhhhcCCC---ceeccchHHHHHHHHHHHHHhcccchhhhh-hhHHHHHHHHHH
Q 011129          299 GPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE---PTVGGTGPVFAIIGAWLIYQFQNKDLIAKD-VSERMFQKAILS  374 (493)
Q Consensus       299 G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~---~~vGaSGaVfgLlga~~~~~~~~~~~~~~~-~~~~l~~~~li~  374 (493)
                      |..+|+.+|+.+|+.+|+++|+++++.+..+.+.   +.+|+||++||++|+++...+..+...... .+..+..++.++
T Consensus        95 g~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~  174 (228)
T COG0705          95 GSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIW  174 (228)
T ss_pred             hHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHH
Confidence            9999999999999999999999999999988763   589999999999999999999887765444 777777778888


Q ss_pred             HHHHhhhhcCC---ChhhhhhHhhhhhccc
Q 011129          375 TALSFIISNFG---PVDTWAHLGAAFTDLG  401 (493)
Q Consensus       375 l~l~~i~~~~~---~Is~~AHLgGll~GLl  401 (493)
                      ++..++.....   ++++.||++|++.|++
T Consensus       175 ~~~~~~~~~~~~~~~va~~aHl~G~i~G~l  204 (228)
T COG0705         175 LLYSLFSGAGSFGPSVAWSAHLGGLIGGLL  204 (228)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            88777765543   6999999999999963

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.90  E-value=1.5e-24  Score=219.71  Aligned_cols=142  Identities=30%  Similarity=0.511  Sum_probs=123.2

Q ss_pred             hhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhcCCC-cee
Q 011129          257 LLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTV  335 (493)
Q Consensus       257 ~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~-~~v  335 (493)
                      ...+......+..+|+||++|++|+|+|+.||++||+.+.++|..+|+.+|.+|+.++|++||+.|++++.++.++ ..|
T Consensus       104 ~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sV  183 (316)
T KOG2289|consen  104 KMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISV  183 (316)
T ss_pred             ccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCcee
Confidence            4455666666789999999999999999999999999999999999999999999999999999999999999986 599


Q ss_pred             ccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhhhcCCChhhhhhHhhhhhcc
Q 011129          336 GGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDL  400 (493)
Q Consensus       336 GaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~~~~~~Is~~AHLgGll~GL  400 (493)
                      ||||++|||+|+.+.....||..+....  .....+++++.+...++..+.+++++|+||+++|.
T Consensus       184 GASggvfaLlgA~Ls~l~~Nw~~m~~~~--~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~  246 (316)
T KOG2289|consen  184 GASGGVFALLGAHLSNLLTNWTIMKNKF--AALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGF  246 (316)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHhcchH--HHHHHHHHHHHHHHhhccccceeccccccccCCCc
Confidence            9999999999999999999998764222  23444555555666667789999999999999994

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.80  E-value=1.5e-20  Score=169.45  Aligned_cols=131  Identities=31%  Similarity=0.584  Sum_probs=98.7

Q ss_pred             hcCccceeeecccccCCHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhcCCC--ceeccchHHHHHH
Q 011129          268 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE--PTVGGTGPVFAII  345 (493)
Q Consensus       268 ~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~--~~vGaSGaVfgLl  345 (493)
                      +++||||++|++|+|.|+.|+++|++.++.+|..+|+.+|+.++..+|+++++.+++...+..+.  +.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            57999999999999999999999999999999999999999999999999999999999887664  5899999999999


Q ss_pred             HHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhhhcCCChhhhhhHhhhhhcc
Q 011129          346 GAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDL  400 (493)
Q Consensus       346 ga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~~~~~~Is~~AHLgGll~GL  400 (493)
                      ++.....+.++........  ........+.+.+.....+++++.+|++|+++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~  134 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYL--ALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGL  134 (145)
T ss_dssp             HHHHHHHHCCCCCS---HC--CCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhcchH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999988887654421100  0000111112222333368899999999999995

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.73  E-value=9.7e-19  Score=180.74  Aligned_cols=173  Identities=25%  Similarity=0.344  Sum_probs=133.8

Q ss_pred             cCccceeeecccccCCHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhhcCCC-ceeccchHHHHHHHH
Q 011129          269 VGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPE-PTVGGTGPVFAIIGA  347 (493)
Q Consensus       269 ~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~-~~vGaSGaVfgLlga  347 (493)
                      .+|+||++|+.|+|+|++|++..|..++++-..+|+..|+.|..++|++||+.||+++..+.|. +.||-||+-||+++.
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~  527 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC  527 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence            4699999999999999999999999999999999999999999999999999999999999985 799999999999999


Q ss_pred             HHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhhhcCCChhhhhhHhhhhhcccCCchh--------------hHHHHHH
Q 011129          348 WLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTST--------------WFLLTFA  413 (493)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~~~~~~Is~~AHLgGll~GLlg~~~~--------------~~~i~f~  413 (493)
                      +++....+|..+..+  ...+.-++..+.+.++ ++.|.|||+||+.|++.||+-.++.              .+.++.+
T Consensus       528 l~vEl~qs~~il~~~--w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~yrKr~~ilIs  604 (652)
T KOG2290|consen  528 LFVELFQSWQILERP--WRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLYRKRFYILIS  604 (652)
T ss_pred             HHHHHHhhhHhhhhH--HHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccccchhhhhhHHHHHHH
Confidence            999999998877553  3344444444333344 7889999999999999999655432              2222222


Q ss_pred             HhhhhhhHHHHHHhhhhhhccccchHHHHHHhhHhhhh
Q 011129          414 LTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAILSCF  451 (493)
Q Consensus       414 l~aG~vg~~~~l~~~~~~~~w~~~~l~a~~~~~~ls~~  451 (493)
                      .+    ....+++++..+.+ +.  -.-|-||.+++|+
T Consensus       605 ~i----vf~~Lla~Lvv~fy-~~--~i~cpWce~ltCl  635 (652)
T KOG2290|consen  605 QI----VFSGLLAILVVVFY-NY--PIDCPWCEHLTCL  635 (652)
T ss_pred             HH----HHHHHHHHHHHhee-ec--ccCCchhhhcccc
Confidence            22    11233344433322 21  1348999999995

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.70  E-value=4.8e-17  Score=159.76  Aligned_cols=214  Identities=18%  Similarity=0.190  Sum_probs=148.6

Q ss_pred             cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHH
Q 011129          222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP  300 (493)
Q Consensus       222 ~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~  300 (493)
                      ..|.+| .++.+|+++|+.....+..    +.      ++ .......+.|+||++|++++|.+..|+++||+++|.+|.
T Consensus        13 ~~p~~ts~~~~~~~~i~lv~~~~~i~----~~------~~-l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~   81 (258)
T KOG2632|consen   13 KIPLLTSIVVVLAILIYLVSFFPGIV----EV------LG-LPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGS   81 (258)
T ss_pred             cchHHHHHHHHHHHHHHHHhccchhh----hH------hc-CCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchh
Confidence            456788 9999999999987654422    11      11 122345789999999999999999999999999999999


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHHHHHhhhhcC------C----CceeccchHHHHHHHHHHHHHhcccchh--hhhhhHHH
Q 011129          301 QVCKSYG-PFTFFLIYTLGGISGNLTSFLHT------P----EPTVGGTGPVFAIIGAWLIYQFQNKDLI--AKDVSERM  367 (493)
Q Consensus       301 ~lE~~lG-s~r~l~lyLlsgi~g~l~~~l~~------~----~~~vGaSGaVfgLlga~~~~~~~~~~~~--~~~~~~~l  367 (493)
                      +.|+.+| +.+++..+.+.+++++++..+..      +    +..+|.||+.||+++......+.++...  ...+|..+
T Consensus        82 ~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l  161 (258)
T KOG2632|consen   82 QFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVL  161 (258)
T ss_pred             HHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHH
Confidence            9999999 89999999999999998876543      2    2469999999999999888777766332  23356665


Q ss_pred             HHHHHHHHHHHhhhhcCCChhhhhhHhhhhhcccCCchhhHHHHHHHhhhhhhHHHHHHhhhhhhccccchHHHHHHhhH
Q 011129          368 FQKAILSTALSFIISNFGPVDTWAHLGAAFTDLGGNTSTWFLLTFALTTGAIGVCSVTAGLMHLRAWRSESLAAASSLAI  447 (493)
Q Consensus       368 ~~~~li~l~l~~i~~~~~~Is~~AHLgGll~GLlg~~~~~~~i~f~l~aG~vg~~~~l~~~~~~~~w~~~~l~a~~~~~~  447 (493)
                      ..+++++    .+....|+.++++|++|+++|+        -+.|+.+ |..+.           .++-.....++++  
T Consensus       162 ~Pw~lLi----~~~~lvp~aSFlghl~GllvG~--------ay~~~~f-~lip~-----------~~~~~~v~~~~~~--  215 (258)
T KOG2632|consen  162 APWALLI----ATQILVPQASFLGHLCGLLVGY--------AYAFSSF-GLIPG-----------IRNYRAVTEAAWS--  215 (258)
T ss_pred             HHHHHHH----HHHHHccCchHHHHHHHHHHHH--------HHHHHhh-ccCCc-----------chhHHHhhhhhhh--
Confidence            5554443    3333468999999999999994        3444333 33321           1111222233332  


Q ss_pred             hhhhcccceeeccccCCccchhhHHH
Q 011129          448 LSCFVCKEIILGGHRGKRLQTLEAFA  473 (493)
Q Consensus       448 ls~~ack~i~l~~~r~~~l~~~e~~~  473 (493)
                      ..-++|-++.++. +..+.++.|+.+
T Consensus       216 ~~~~~~~~~~~~~-~~~~~~v~~~~~  240 (258)
T KOG2632|consen  216 LLRLAPWIQDLGS-NSGRGIVFPGLT  240 (258)
T ss_pred             hhhcCCcHHHhcc-ccCCceeccCcC
Confidence            1225777778764 224777777643

>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.60  E-value=5.4e-16  Score=133.83  Aligned_cols=86  Identities=12%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             hhhhccCCChhHHHHHHHHHhhcCCcceeecCccc-------hhhhHHHHHhhhh--hccCCCCCcchhhHhhhcccCCc
Q 011129          137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTT-------ERNLVAAQLSISK--SSKRGYMGKLKGYRELRNKDGVR  207 (493)
Q Consensus       137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~-------de~~~~~~~~e~~--~~~p~~~~~~~rY~~as~~~g~~  207 (493)
                      |+++++++|||+||+|+|||+++||++++++++++       ||++++++++|++  ++||+|+    ||++++|+.|++
T Consensus         1 M~~l~~~~n~r~AqaF~DYl~sqgI~~~i~~~~~~~~~lwl~de~~~~~a~~el~~Fl~nP~~~----rYqaASWq~g~~   76 (101)
T PF12122_consen    1 MIRLGSLNNPRAAQAFIDYLASQGIELQIEPEGQGQFALWLHDEEHLEQAEQELEEFLQNPNDP----RYQAASWQTGST   76 (101)
T ss_dssp             -EEEEEESSHHHHHHHHHHHHHTT--EEEE-SSSE--EEEES-GGGHHHHHHHHHHHHHS-SS-----------------
T ss_pred             CeEEEecCCHHHHHHHHHHHHHCCCeEEEEECCCCceEEEEeCHHHHHHHHHHHHHHHHCCCCH----HHHHHHHhcCCc
Confidence            89999999999999999999999999999987665       8999999999999  9999999    999999999986


Q ss_pred             c----ccchHHhhhcccccchHHH
Q 011129          208 S----LERDLALQRTEETSNLYLI  227 (493)
Q Consensus       208 ~----~~~~~~~~~~~~~~~ppvT  227 (493)
                      +    ++.+.++.+++...+ |+|
T Consensus        77 ~~~~~y~~~s~~~~l~~~aG-plT   99 (101)
T PF12122_consen   77 RTQFSYQSPSLLQQLRAQAG-PLT   99 (101)
T ss_dssp             ------------------S--HHH
T ss_pred             cCccCcCCchHHHHHHHcCC-Cee
Confidence            5    455666777765554 666

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.34  E-value=3.6e-07  Score=92.09  Aligned_cols=167  Identities=18%  Similarity=0.252  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHH-HHH
Q 011129          225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP-QVC  303 (493)
Q Consensus       225 pvT~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~-~lE  303 (493)
                      .++.++++|+++|.++.+.......     .+  |- ..+. +..---|-++++.|.|.+.+|+..||+.++.+.. .+-
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~-----~~--~m-ls~~-~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~  187 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTM-----IP--WM-LSRN-AYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALK  187 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhh-----hh--HH-hhcc-cccccceeEEeehhcchhHhhhcHHHHHHHHHhccccc
Confidence            3448999999999988765432111     11  10 0111 1223356699999999999999999998887776 888


Q ss_pred             HhcCChhHHHHHHHHHHHHHHhhhhc-CC----CceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHH--
Q 011129          304 KSYGPFTFFLIYTLGGISGNLTSFLH-TP----EPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTA--  376 (493)
Q Consensus       304 ~~lGs~r~l~lyLlsgi~g~l~~~l~-~~----~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~--  376 (493)
                      -.+|...+..+|+.++..|......- .+    .+.+|+||++|++.++.....++....+....+.+....+.+-.+  
T Consensus       188 ~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~  267 (310)
T KOG2980|consen  188 GSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAA  267 (310)
T ss_pred             CCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHH
Confidence            88999999999996666665554332 11    368999999999999999888876665544333333222222111  


Q ss_pred             HHhhhh--cCCChhhhhhHhhhhhcc
Q 011129          377 LSFIIS--NFGPVDTWAHLGAAFTDL  400 (493)
Q Consensus       377 l~~i~~--~~~~Is~~AHLgGll~GL  400 (493)
                      +++...  ....-++.||++|-+.|.
T Consensus       268 ~~~a~~~l~~~~~n~~Ah~~gsl~Gv  293 (310)
T KOG2980|consen  268 YDFAGLILGWGFFNHAAHLSGSLFGV  293 (310)
T ss_pred             hhhcceeeccccchhHhhhcchHHHH
Confidence            122111  123467779999999884

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.20  E-value=1.2e-05  Score=77.41  Aligned_cols=161  Identities=12%  Similarity=0.100  Sum_probs=93.0

Q ss_pred             hHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCH-HHHHHHHHHHHHHHHH
Q 011129          224 LYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGL-FHVALSCWALLTFGPQ  301 (493)
Q Consensus       224 ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~-~HLlfNml~L~~~G~~  301 (493)
                      ||+| ..++.++++.++....-..         |...--.++....++|+||++|+.|.-.+. ++.++|++.++..+..
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~---------~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~   72 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIIS---------PYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSS   72 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCC---------HHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhH
Confidence            7899 7777777776665432111         111111222334679999999999986544 7999999999999999


Q ss_pred             HHHhc-C-C-hhHHHHHHHHHHHHHHhhhhcCCC----ceeccchHHHHHHHHHHH-HHhcccchhh--hhhhHHHHHHH
Q 011129          302 VCKSY-G-P-FTFFLIYTLGGISGNLTSFLHTPE----PTVGGTGPVFAIIGAWLI-YQFQNKDLIA--KDVSERMFQKA  371 (493)
Q Consensus       302 lE~~l-G-s-~r~l~lyLlsgi~g~l~~~l~~~~----~~vGaSGaVfgLlga~~~-~~~~~~~~~~--~~~~~~l~~~~  371 (493)
                      +|+.. + + ..++...+.+++.-.+++.+..+.    +..  +.++...+.+.+. ..+.......  ..++.+.+.+ 
T Consensus        73 LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l--~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~-  149 (197)
T PF04511_consen   73 LEEGHFQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFL--GSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPW-  149 (197)
T ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH--HHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHH-
Confidence            99983 2 2 467776666666666666554321    112  2333333344443 2233322221  2345454443 


Q ss_pred             HHHHHHHhhhhcCCChhhhhhHhhhhhcc
Q 011129          372 ILSTALSFIISNFGPVDTWAHLGAAFTDL  400 (493)
Q Consensus       372 li~l~l~~i~~~~~~Is~~AHLgGll~GL  400 (493)
                       +.+++.++.+   +-+...++-|+++|-
T Consensus       150 -~~~~~~~l~~---~~~~~~~l~Gi~~Gh  174 (197)
T PF04511_consen  150 -VLLAFSLLFG---GSSPIPDLLGILVGH  174 (197)
T ss_pred             -HHHHHHHHhC---CCcHHHHHHHHHHHH
Confidence             3334444432   224557888888884

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=97.85  E-value=1.2e-05  Score=69.44  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=54.4

Q ss_pred             ccceeeecccccCCHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhh
Q 011129          271 EWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFL  328 (493)
Q Consensus       271 q~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~l  328 (493)
                      .+|+++|+.|++.++..+++|.+.++..|+.+|+.+|+++++-..++.++.+|++..+
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~   64 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFL   64 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHH
Confidence            6899999999999999999999999999999999999999999999999888887654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.43  E-value=0.00046  Score=67.94  Aligned_cols=97  Identities=14%  Similarity=0.170  Sum_probs=68.8

Q ss_pred             cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCC-HHHHHHHHHHHHHHH
Q 011129          222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG-LFHVALSCWALLTFG  299 (493)
Q Consensus       222 ~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s-~~HLlfNml~L~~~G  299 (493)
                      ..||+| .....|++.=++....-..         |...--.++..+++.|+||++|+.+.-.. -+|.++||+.++-..
T Consensus        11 ~iPpVTR~~~~~~v~tt~~~~l~lIs---------P~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~   81 (239)
T KOG0858|consen   11 QIPPVTRYYTTACVVTTLLVRLDLIS---------PFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS   81 (239)
T ss_pred             cCChHHHHHHHHHHHHHHHHhhcccC---------chheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence            457999 7777787776654332211         11111122234579999999999998865 699999999999999


Q ss_pred             HHHHHhcC---ChhHHHHHHHHHHHHHHhhh
Q 011129          300 PQVCKSYG---PFTFFLIYTLGGISGNLTSF  327 (493)
Q Consensus       300 ~~lE~~lG---s~r~l~lyLlsgi~g~l~~~  327 (493)
                      ..+|+-.=   +..|+..++.++++-.+..+
T Consensus        82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99998642   37788888888777765555

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=0.02  Score=57.22  Aligned_cols=59  Identities=17%  Similarity=0.303  Sum_probs=50.8

Q ss_pred             hcCccceeeecccccCCHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhh
Q 011129          268 LVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSF  327 (493)
Q Consensus       268 ~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~~  327 (493)
                      ...|+||++..-|.-.+-.-+++-++.|+++ +.+||.+|+.||..+-+.+++.+-++..
T Consensus        47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~  105 (323)
T KOG4463|consen   47 KYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEV  105 (323)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHH
Confidence            4589999999999999999999987777775 8899999999999888888888766643

>COG5291 Predicted membrane protein [Function unknown]

Probab=93.61  E-value=0.1  Score=51.93  Aligned_cols=48  Identities=13%  Similarity=0.341  Sum_probs=38.1

Q ss_pred             hhcCccceeeecccccCC-HHHHHHHHHHHHHHHHHHHHh-cCCh--hHHHH
Q 011129          267 ILVGEWWRLVTPMFLHSG-LFHVALSCWALLTFGPQVCKS-YGPF--TFFLI  314 (493)
Q Consensus       267 i~~gq~WRl~Ts~FlH~s-~~HLlfNml~L~~~G~~lE~~-lGs~--r~l~l  314 (493)
                      +++-||||+||+..+-.+ -+-.++|++.++--...+|+- +|+.  .++..
T Consensus        55 ~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~lv~Y~~y  106 (313)
T COG5291          55 LKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTSLVEYFWY  106 (313)
T ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCccHHHHHHH
Confidence            468899999998777765 578899999999999999985 4555  55433

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=93.57  E-value=0.052  Score=55.46  Aligned_cols=85  Identities=21%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             CccceeeecccccCCHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh--------hhcCC-----Cceec
Q 011129          270 GEWWRLVTPMFLHSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTS--------FLHTP-----EPTVG  336 (493)
Q Consensus       270 gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~lE~~lGs~r~l~lyLlsgi~g~l~~--------~l~~~-----~~~vG  336 (493)
                      ...|+++|+.|+-.+++-.++|++.+.+-|..+|+.+|+..++..|.+.-..-+++.        .++..     .+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            478999999999999999999999999999999999999999987776544433332        11222     24679


Q ss_pred             cchHHHHHHHHHHHHHhc
Q 011129          337 GTGPVFAIIGAWLIYQFQ  354 (493)
Q Consensus       337 aSGaVfgLlga~~~~~~~  354 (493)
                      ..|.+-|++.++=-..+.
T Consensus       145 ~~gilaGilVa~kQllpd  162 (326)
T KOG2890|consen  145 TTGILAGILVAWKQLLPD  162 (326)
T ss_pred             chHHHHHHHHHHHHHcCc
Confidence            999999988776544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	493
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	4e-33
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	2e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  123 bits (311), Expect = 4e-33
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 225 YLIILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSG 284
            ++  +   V +++ +      +  +        Y A   +     E WR ++   +H  
Sbjct: 13  LILTALC--VLIYIAQQLGFEDDIMYLMH-----YPAYEEQD---SEVWRYISHTLVHLS 62

Query: 285 LFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAI 344
             H+  +      FG  + +++G     ++Y +            +     G +G V+A+
Sbjct: 63  NLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAV 122

Query: 345 IGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLG 394
           +G   I    N  L   D+ E  F   ++  AL FI   FG  +   AH+ 
Sbjct: 123 LGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHIS 171

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  118 bits (297), Expect = 2e-31
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 9/168 (5%)

Query: 227 IILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
            +++   V VF+                  +L+ A   +  L  E+WR  T   +H  L 
Sbjct: 8   WVMMIACVVVFIAMQ--------ILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLM 59

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 346
           H+  +       G  V K  G     +I  +  +         +     G +G V+A++G
Sbjct: 60  HILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

Query: 347 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLG 394
              +   ++       +   +   A++     +       +   AH+ 
Sbjct: 120 YVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIA 166

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 60/423 (14%), Positives = 117/423 (27%), Gaps = 110/423 (26%)

Query: 25  QNERGFKCHCISLTENSRFSSTSDNMCKRWRSIYPNQDVAELPVQWKMSNITSHVGSFSK 84
           Q +  FK   ++L   +   +  + + K    I PN            SNI   + S   
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSI-- 230

Query: 85  KASTKEKLRM-------VRC-----------AAKSSDSECQIRILESYLAKLKDDSIQN- 125
               + +LR          C           A  + +  C+I      L   +   + + 
Sbjct: 231 ----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------LLTTRFKQVTDF 280

Query: 126 -SSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTTERNLVAAQLSISK 184
            S+ ++  I   H         T  +     L  L+   +    +    N     LSI  
Sbjct: 281 LSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIA 334

Query: 185 SSKRGYMGKLKGYRELRNKDGVRSLERDLALQRTEETSNLYLIILVSIDVAVFLFEIASP 244
            S R  +     ++ +        +E  L +    E   ++        ++VF      P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD------RLSVFPPSAHIP 388

Query: 245 IRNSEFGFFSLPLLYGAKI--------NELI---LVGEWWRLVTPMFLHSGLF------- 286
                     L L++   I        N+L    LV +  +  T + + S          
Sbjct: 389 TI-------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLE 440

Query: 287 -----HVAL-------SCWALLTFGPQVCKSYGPFTFFLIYTLGGI--SGNLTSF----- 327
                H ++         +      P     Y  F   + + L  I     +T F     
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 328 --------LHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSF 379
                   +         +G +   +     Y    K  I  +  +    + +++  L F
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKY---ERLVNAILDF 551

Query: 380 IIS 382
           +  
Sbjct: 552 LPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.95
2gqc_A	70	Rhomboid intramembrane protease; alpha-beta domain	98.7
2lep_A	69	Rhomboid protease GLPG 1; cell membrane, cytosol,	97.84

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=3.1e-28  Score=229.01  Aligned_cols=170  Identities=16%  Similarity=0.118  Sum_probs=132.8

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHHH
Q 011129          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  301 (493)
Q Consensus       223 ~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~  301 (493)
                      .||+| .++++|+++|+++...+... ..       .+....+..+.++||||++|++|+|.|+.|+++||++++.+|..
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~~~-~~-------~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~   74 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGDQE-VM-------LWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA   74 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHH-HH-------HHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHH-HH-------HhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            46889 99999999999987654210 01       11112222357899999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhh
Q 011129          302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  381 (493)
Q Consensus       302 lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~  381 (493)
                      +|+.+|+.|++.+|+++++.|+++++++.++..+|+||++||++|+.++....+++.. ..++.+...+..+++++++..
T Consensus        75 ~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~  153 (181)
T 2xov_A           75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWFD  153 (181)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCce-eeeHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988776799999999999998876554444331 223445555556666665543


Q ss_pred             hcCCChhhhhhHhhhhhccc
Q 011129          382 SNFGPVDTWAHLGAAFTDLG  401 (493)
Q Consensus       382 ~~~~~Is~~AHLgGll~GLl  401 (493)
                      ...+++|+.||++|+++|++
T Consensus       154 ~~~~~v~~~aHlgG~l~G~l  173 (181)
T 2xov_A          154 LFGMSMANGAHIAGLAVGLA  173 (181)
T ss_dssp             SSCCSSCHHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHH
Confidence            33468999999999999953

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.95  E-value=2e-28  Score=233.15  Aligned_cols=169  Identities=18%  Similarity=0.273  Sum_probs=127.9

Q ss_pred             cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHH
Q 011129          222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP  300 (493)
Q Consensus       222 ~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~  300 (493)
                      +.||+| .++++|+++|+++...+... .       ..+.+..+..+..+||||++|++|+|.|+.|+++||++++.+|.
T Consensus         7 ~~~pvt~~li~~~v~vfll~~~~~~~~-~-------~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~   78 (196)
T 2nr9_A            7 QQGKITLILTALCVLIYIAQQLGFEDD-I-------MYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGG   78 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHH-H-------HHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCcHH-H-------HHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            446888 99999999999987654210 0       11112222235789999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhh
Q 011129          301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI  380 (493)
Q Consensus       301 ~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i  380 (493)
                      .+|+.+|+.+++.+|+++++.|+++++++.++..+|+||+|||++|+.++....+++..  .++.+...++++++++++.
T Consensus        79 ~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  156 (196)
T 2nr9_A           79 MIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFI  156 (196)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSC--CCCCSSTTTTTTTTTHHHH
T ss_pred             HHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhh--cchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988776799999999999998877655444331  1222222233333444443


Q ss_pred             hh-cCCChhhhhhHhhhhhcc
Q 011129          381 IS-NFGPVDTWAHLGAAFTDL  400 (493)
Q Consensus       381 ~~-~~~~Is~~AHLgGll~GL  400 (493)
                      .. ..+++|+.||+||+++|+
T Consensus       157 ~~~~~~~v~~~aHlgG~l~G~  177 (196)
T 2nr9_A          157 SPLFGVEMGNAAHISGLIVGL  177 (196)
T ss_dssp             SCSSCCTTCHHHHHHHHHHHH
T ss_pred             HhccCCCccHHHHHHHHHHHH
Confidence            21 224799999999999995

>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}

Probab=98.70  E-value=4e-09  Score=84.21  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=50.0

Q ss_pred             hhh--hccCCChhHHHHHHHHHhhcCCcceeecCccc------hhhhHHHHHhhhh--hccCCCC
Q 011129          137 HSR--SGEINAKTELDSLDAYLGKLNTDAKFSTDQTT------ERNLVAAQLSISK--SSKRGYM  191 (493)
Q Consensus       137 m~~--~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~------de~~~~~~~~e~~--~~~p~~~  191 (493)
                      |.+  +++++|||.||+|+|||+++||++++++++++      ||++.+++++|++  .++|+++
T Consensus         1 M~~~~v~~l~~~r~aqaf~dyL~~~~I~~~v~~~~~~~~Lwl~d~~~~~~a~~el~~F~~~P~~~   65 (70)
T 2gqc_A            1 MSAVQVLKFPLSVDLAGFVGLLRRLNVPHRVSEESGQQVLWVPDERLAEQVRELYRRYPEGDPQA   65 (70)
T ss_dssp             CCCCEEEEECTTTTGGGHHHHHHTTTCCSEEEEETTEEEEECCCSSHHHHHHHHHTTSSSTTTTS
T ss_pred             CCcceEEEECCHHHHHHHHHHHHHCCCcEEEEECCCceEEEEcCHHHHHHHHHHHHHHHhCCCcc
Confidence            555  89999999999999999999999999987765      7889999999999  8999998

>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}

Probab=97.84  E-value=2e-08  Score=79.93  Aligned_cols=55  Identities=2%  Similarity=-0.052  Sum_probs=48.7

Q ss_pred             hhhhccCCChhHHHHHHHHHhhcCCcceeecCccc-----hhhhHHHHHhhhh--hccCCCC
Q 011129          137 HSRSGEINAKTELDSLDAYLGKLNTDAKFSTDQTT-----ERNLVAAQLSISK--SSKRGYM  191 (493)
Q Consensus       137 m~~~~~~~~~~~aqaf~dYl~~~~i~~~v~~~~~~-----de~~~~~~~~e~~--~~~p~~~  191 (493)
                      |+++++++||++||+|+|||+++||+++++++..+     ||++.++|+++++  .++|+|-
T Consensus         1 M~~l~~~~N~~~Aq~f~dyL~s~gI~~~v~~e~~~elWl~de~~~~~A~~el~~f~~~P~~~   62 (69)
T 2lep_A            1 MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAERVRAELARFLENPADL   62 (69)
Confidence            78899999999999999999999999999987543     7778899999998  7888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	493
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-22
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	5e-21

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 90.9 bits (225), Expect = 5e-22
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 9/172 (5%)

Query: 227 IILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
            +++   V VF+                  +L+ A   +  L  E+WR  T   +H  L 
Sbjct: 8   WVMMIACVVVFIAMQ--------ILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLM 59

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 346
           H+  +       G  V K  G     +I  +  +         +     G +G V+A++G
Sbjct: 60  HILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

Query: 347 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAAFT 398
              +   ++       +   +   A++     +       +   AH+     
Sbjct: 120 YVWLRGERDPQSGI-YLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAV 170

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 88.7 bits (219), Expect = 5e-21
 Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 227 IILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLF 286
           +IL ++ V +++ +      +  +                    E WR ++   +H    
Sbjct: 10  LILTALCVLIYIAQQLGFEDDIMYLMHYPAYE--------EQDSEVWRYISHTLVHLSNL 61

Query: 287 HVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIG 346
           H+  +      FG  + +++G     ++Y +            +     G +G V+A++G
Sbjct: 62  HILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLG 121

Query: 347 AWLIYQFQNKDLIAKDVSERMFQKAILSTALSFIISNFGP-VDTWAHLGAAFT 398
              I    N  L   D+ E  F   ++  AL FI   FG  +   AH+     
Sbjct: 122 YVFIRDKLNHHLF--DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIV 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.94
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.93

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.5e-27  Score=220.78  Aligned_cols=171  Identities=16%  Similarity=0.121  Sum_probs=136.8

Q ss_pred             cchHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHH
Q 011129          222 SNLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGP  300 (493)
Q Consensus       222 ~~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~  300 (493)
                      +.+|+| .++++|+++|+.....+....        ..+.....+...++||||++|++|+|.|+.|+++||+.++.+|.
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~--------~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~   73 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEV--------MLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGG   73 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHH--------HHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHH--------HHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            346889 999999999998765543211        11222223446789999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhh
Q 011129          301 QVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFI  380 (493)
Q Consensus       301 ~lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i  380 (493)
                      .+|+.+|+++++.+|+++++.|++++.++.++...|+||+++|++++.......++... ...+.....+..++++..+.
T Consensus        74 ~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  152 (180)
T d3b45a1          74 AVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSG-IYLQRGLIIFALIWIVAGWF  152 (180)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGS-CCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccchhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhH-HhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888899999999999999998877766543 33344444455555555555


Q ss_pred             hhcCCChhhhhhHhhhhhccc
Q 011129          381 ISNFGPVDTWAHLGAAFTDLG  401 (493)
Q Consensus       381 ~~~~~~Is~~AHLgGll~GLl  401 (493)
                      ....+++++.||++|+++|++
T Consensus       153 ~~~~~~v~~~aHlgG~l~G~~  173 (180)
T d3b45a1         153 DLFGMSMANGAHIAGLAVGLA  173 (180)
T ss_dssp             TSSCCSSCHHHHHHHHHHHHH
T ss_pred             HhccCchHHHHHHHHHHHHHH
Confidence            445578999999999999963

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=5.2e-27  Score=219.30  Aligned_cols=169  Identities=17%  Similarity=0.239  Sum_probs=131.2

Q ss_pred             chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhcchhhhhhcCccceeeecccccCCHHHHHHHHHHHHHHHHH
Q 011129          223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ  301 (493)
Q Consensus       223 ~ppvT-~Liai~v~VFll~~~~~~~~~~~~~~~~p~~~Ga~~~~~i~~gq~WRl~Ts~FlH~s~~HLlfNml~L~~~G~~  301 (493)
                      .+|+| +++++|+++|+++.......  ..      .+.......+.++||||++|++|+|.|+.|+++||++++.+|..
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~   76 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFEDD--IM------YLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGM   76 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHH--HH------HHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHH--HH------HHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            35888 99999999999887643221  10      11111223457899999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHHHhhhhcCCCceeccchHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHhhh
Q 011129          302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII  381 (493)
Q Consensus       302 lE~~lGs~r~l~lyLlsgi~g~l~~~l~~~~~~vGaSGaVfgLlga~~~~~~~~~~~~~~~~~~~l~~~~li~l~l~~i~  381 (493)
                      +|+.+|+.+++.+|+++++.|++++.+..+++.+|+||++||++++++...+.++.....+  ......++++++++++.
T Consensus        77 ~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  154 (189)
T d2nr9a1          77 IERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLP--EGFFTMLLVGIALGFIS  154 (189)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCC--CSSTTTTTTTTTHHHHS
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhHhccH--HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888899999999999999988887776653222  22222333444444443


Q ss_pred             h-cCCChhhhhhHhhhhhccc
Q 011129          382 S-NFGPVDTWAHLGAAFTDLG  401 (493)
Q Consensus       382 ~-~~~~Is~~AHLgGll~GLl  401 (493)
                      . ..+++++.||++|+++|++
T Consensus       155 ~~~~~~v~~~aHl~G~l~G~~  175 (189)
T d2nr9a1         155 PLFGVEMGNAAHISGLIVGLI  175 (189)
T ss_dssp             CSSCCTTCHHHHHHHHHHHHH
T ss_pred             hccCCChHHHHHHHHHHHHHH
Confidence            3 2368999999999999953