Citrus Sinensis ID: 011151
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.878 | 0.303 | 0.300 | 5e-34 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.863 | 0.438 | 0.278 | 1e-32 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.695 | 0.349 | 0.302 | 5e-32 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.884 | 0.412 | 0.294 | 2e-31 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.766 | 0.380 | 0.301 | 2e-31 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.778 | 0.387 | 0.305 | 5e-30 | |
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.593 | 0.342 | 0.262 | 3e-11 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.873 | 0.472 | 0.263 | 3e-09 | |
| P0C8S1 | 906 | Probable disease resistan | no | no | 0.857 | 0.465 | 0.259 | 5e-09 | |
| Q39214 | 926 | Disease resistance protei | no | no | 0.857 | 0.455 | 0.255 | 1e-08 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 144/479 (30%), Positives = 231/479 (48%), Gaps = 47/479 (9%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+EDIG +Y L ++SFFQ D +++ MHD+++D A+ + + C +E + E
Sbjct: 458 LEDIGNDYLGDLVAQSFFQRLDI----TMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPE 513
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFS-----EVL 115
+ + + R + ++ G LR++L + S S +VL
Sbjct: 514 IPSTTRH--------FSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVL 565
Query: 116 PQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCE 175
L + L+ LR L L Q I +P +++ L L+YL L + I++LPE +C
Sbjct: 566 NPLLNALSGLRILSLSHYQ-------ITNLPKSLKGLKLLRYLDLSSTK-IKELPEFVCT 617
Query: 176 LYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235
L NL+ L +++C L LP+ I +L L LD T + +P GI +L +L++++ FV+
Sbjct: 618 LCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFVI 676
Query: 236 GGGYDRARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294
G L LK+L+ LR I L V+ A EA+ A L++K L L L +
Sbjct: 677 G--RLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGS 734
Query: 295 G---DEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWV--MSLTNLRALLL 349
G A + + +L L P P+LK I+ Y+G P+ W+ S + ++ L
Sbjct: 735 GFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQG--GAFPK-WLGDSSFFGITSVTL 791
Query: 350 KNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409
+C C LPP+G+LPSL+ L IE +++VG +F E+++ G + F L+ LKFY
Sbjct: 792 SSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRG---VPFQSLQILKFY 848
Query: 410 DMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL-KALPDLLLQKTTLQKLLIGRCPI 467
M +EW G I P L L I C L K P+ L T ++ I CP+
Sbjct: 849 GMPRWDEWICPELEDG---IFPCLQKLIIQRCPSLRKKFPEGLPSST---EVTISDCPL 901
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 165/593 (27%), Positives = 232/593 (39%), Gaps = 168/593 (28%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+ED+G+E + L RSFFQ+ + D + KMHD++HD A L S + +
Sbjct: 442 LEDVGDEVWKELYLRSFFQEIEVKDGK--TYFKMHDLIHDLATSLFSANTSSSNIRE--- 496
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
IN ++ + G ++ F LP L +
Sbjct: 497 --INKHSYTHMMSI----------------------GFAEVV--------FFYTLPPL-E 523
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
K LR L L + K+P++I L+HL+YL+L G + LP+ LC+L NL+
Sbjct: 524 KFISLRVLNL-------GDSTFNKLPSSIGDLVHLRYLNLYGSG-MRSLPKQLCKLQNLQ 575
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
L++ C L LP+ KL L L D + L +P IG L L+ + +FVV G
Sbjct: 576 TLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVV--GRK 633
Query: 241 RARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQA 300
+ LG L LNL I L V + +A+ A L K NL L + ++ E
Sbjct: 634 KGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYES- 692
Query: 301 RRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWV--MSLTNLRALLLKNCRNCEHL 358
E ++LEAL P NL L I +RG +P W+ L N+ ++L+ N RNC L
Sbjct: 693 ---EEVKVLEALKPHSNLTSLKIYGFRGIH--LPE-WMNHSVLKNIVSILISNFRNCSCL 746
Query: 359 PPLGKLPSLESLYIE-GMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW 417
PP G LP LESL + G V+ V E D D S FP ++F + +L+ W
Sbjct: 747 PPFGDLPCLESLELHWGSADVEYVE------EVDIDVHS--GFP--TRIRFPSLRKLDIW 796
Query: 418 DFGTAIKG--------------EIII---------------------------------- 429
DFG+ +KG E+II
Sbjct: 797 DFGS-LKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMF 855
Query: 430 --MPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRC---------------------- 465
+ L +L IS C LK LP L L+ L I C
Sbjct: 856 KNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFV 915
Query: 466 ---------------------------PILEERCRKETGEDWPNIRHIPELYI 491
P L +RC K GEDW I HIP + I
Sbjct: 916 EHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNI 968
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 189/423 (44%), Gaps = 81/423 (19%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTV---EVHS 57
+ED+G E +N L RSFFQ+ + + + KMHD++HD A L S + E+++
Sbjct: 441 LEDVGNEVWNELYLRSFFQEIEVESGK--TYFKMHDLIHDLATSLFSANTSSSNIREINA 498
Query: 58 GEELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQ 117
+ + S G +++ S P
Sbjct: 499 NYDGYMMSIGFAEVV---------------------------------------SSYSPS 519
Query: 118 LFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELY 177
L K LR L L + + ++P++I L+HL+YL L G I LP+ LC+L
Sbjct: 520 LLQKFVSLRVLNLR-------NSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQ 572
Query: 178 NLERLNITSCNHLRELPQ---GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234
NL+ L++ C+ L LP+ +G LR L+ D L P IG L L+ ++ FV
Sbjct: 573 NLQTLDLHYCDSLSCLPKQTSKLGSLRNLLL----DGCSLTSTPPRIGLLTCLKSLSCFV 628
Query: 235 VGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294
+G + LG LK LNL SI L V +A+ A L K NL L L +D D
Sbjct: 629 IGK--RKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWD--LD 684
Query: 295 GDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMS--LTNLRALLLKNC 352
G + R +LEAL P NLK L I+ + G R +P +W+ L N+ ++ ++ C
Sbjct: 685 G-----KHRYDSEVLEALKPHSNLKYLEINGFGGIR--LP-DWMNQSVLKNVVSIRIRGC 736
Query: 353 RNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412
NC LPP G+LP LESL + + VE D FP L+ L +D
Sbjct: 737 ENCSCLPPFGELPCLESLELHTGSA---------DVEYVEDNVHPGRFPSLRKLVIWDFS 787
Query: 413 ELE 415
L+
Sbjct: 788 NLK 790
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 142/482 (29%), Positives = 228/482 (47%), Gaps = 47/482 (9%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+E++G EYF+ L SRS Q + MHD +++ AQ+ S E + + G +
Sbjct: 466 LEELGNEYFSELESRSLLQKTK-------TRYIMHDFINELAQF-ASGE-FSSKFEDGCK 516
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQ--- 117
L ++ + L L + P+ ++ ++ LR+ L S S S L Q
Sbjct: 517 LQVS-----ERTRYLSYLRDNYAEPMEFEA-LREVKFLRTFLPLSLTNSSRSCCLDQMVS 570
Query: 118 --LFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEK-LLHLKYLSLCGQREIEKLPETLC 174
L LT LR L L + I ++P + K + H ++L L + E+EKLP++LC
Sbjct: 571 EKLLPTLTRLRVLSLSHYK-------IARLPPDFFKNISHARFLDL-SRTELEKLPKSLC 622
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234
+YNL+ L ++ C+ L+ELP I L L YLD T LR +P G L +L+ +T F
Sbjct: 623 YMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFF 681
Query: 235 VGGG-YDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLR 293
V R LG L L+ + I L V D +A A L KK+L E+ +
Sbjct: 682 VSASDGSRISELGGLHDLH--GKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGS 739
Query: 294 DGDEEQA---RRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALL 348
E R + + E L P ++++L I+ Y+GRR P +W+ S + + +
Sbjct: 740 SSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRR--FP-DWLSDPSFSRIVCIR 796
Query: 349 LKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKF 408
L+ C+ C LP LG+LP L+ L+I GM ++ +G +F + F L+ L+F
Sbjct: 797 LRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRF 856
Query: 409 YDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLK-ALPDLLLQKTTLQKLLIGRCPI 467
++ + +EW +G+ + P L L I C +L LP L +L L I +C +
Sbjct: 857 DNLPDWQEWLDVRVTRGD--LFPSLKKLFILRCPELTGTLPTFL---PSLISLHIYKCGL 911
Query: 468 LE 469
L+
Sbjct: 912 LD 913
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 214/478 (44%), Gaps = 101/478 (21%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+ED+G E +N L RSFFQ+ + + KMHD++HD A + S + +
Sbjct: 441 LEDVGNEVWNELYLRSFFQEIEVKSGK--TYFKMHDLIHDLATSMFSASASSRSIRQ--- 495
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVL----P 116
IN ++ ++ ++ S+ FSEV+ P
Sbjct: 496 --INVKDDEDMMFIVTNYKDMMSIG-------------------------FSEVVSSYSP 528
Query: 117 QLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176
LF + LR L L + +++P+++ L+HL+YL L G + I LP+ LC+L
Sbjct: 529 SLFKRFVSLRVLNLSNSE-------FEQLPSSVGDLVHLRYLDLSGNK-ICSLPKRLCKL 580
Query: 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVG 236
NL+ L++ +C L LP+ KL L L D L +P IG L L+ + FVVG
Sbjct: 581 QNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCP-LTSMPPRIGLLTCLKTLGYFVVG 639
Query: 237 GGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGD 296
+ LG L+ LNL SI L V + EA+ A L K NL L + +DR
Sbjct: 640 E--RKGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDR----- 692
Query: 297 EEQARRRESE--RLLEALGPPPNLKELVIDEYRGRRNVVPRNWV--MSLTNLRALLLKNC 352
R ESE ++LEAL P PNLK L I ++ G +P +W+ L N+ ++L+ C
Sbjct: 693 ---PNRYESEEVKVLEALKPHPNLKYLEIIDFCGF--CLP-DWMNHSVLKNVVSILISGC 746
Query: 353 RNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412
NC LPP G+LP LESL ++ DGS ++E
Sbjct: 747 ENCSCLPPFGELPCLESLELQ-------------------DGS-------------VEVE 774
Query: 413 ELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDL--LLQKTTLQKLLIGRCPIL 468
+E+ F T + P L L I G C LK L + Q L+++ I CP+
Sbjct: 775 YVEDSGFLTRRR-----FPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMF 827
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 206/458 (44%), Gaps = 75/458 (16%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+ED+G E +N L RSFFQ+ + + K+HD++HD A L + G
Sbjct: 443 LEDVGNEVWNELYLRSFFQEIEAKSGN--TYFKIHDLIHDLATSL-----FSASASCGNI 495
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
IN K T+ G + +S + P L
Sbjct: 496 REINVKDYKH------TVSIGFAAVVSSYS-------------------------PSLLK 524
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
K LR L L + ++++P++I LLHL+YL L LPE LC+L NL+
Sbjct: 525 KFVSLRVLNLSYSK-------LEQLPSSIGDLLHLRYLDLSCNN-FRSLPERLCKLQNLQ 576
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
L++ +C L LP+ KL L +L D L P IG L L+ + F+VG
Sbjct: 577 TLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCP-LTSTPPRIGLLTCLKTLGFFIVGS--K 633
Query: 241 RARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQA 300
+ LG LK LNL SI L V + +A A L K NL L + +D DG
Sbjct: 634 KGYQLGELKNLNLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSWD--NDG----P 686
Query: 301 RRRESE--RLLEALGPPPNLKELVIDEYRGRRNVVPRNWV--MSLTNLRALLLKNCRNCE 356
R ES+ ++LEAL P PNLK L I + G R P +W+ L + ++ +K+C+NC
Sbjct: 687 NRYESKEVKVLEALKPHPNLKYLEIIAFGGFR--FP-SWINHSVLEKVISVRIKSCKNCL 743
Query: 357 HLPPLGKLPSLESLYIE-GMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD----- 410
LPP G+LP LE+L ++ G V+ V + + + S+ +FP LK L+ +
Sbjct: 744 CLPPFGELPCLENLELQNGSAEVEYVEED----DVHSRFSTRRSFPSLKKLRIWFFRSLK 799
Query: 411 --MEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA 446
M+E E F + I+ P F +S KL+
Sbjct: 800 GLMKEEGEEKFPMLEEMAILYCPLFVFPTLSSVKKLEV 837
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 40/332 (12%)
Query: 5 GEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLT-VEVHSGEELAI 63
GE+ F+ L +R + DK G I TCK+HD+V D + + + E + L I
Sbjct: 458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSNPEGLNCRHLGI 517
Query: 64 N-SFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKL 122
+ +F EK+I H+ LRG+ S ++ + + + L + F
Sbjct: 518 SGNFDEKQIK----VNHK--------------LRGVVST-TKTGEVNKLNSDLAKKFTDC 558
Query: 123 TCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERL 182
LR L + + + + +I I L HL LSL + + P ++ +L+NL+ L
Sbjct: 559 KYLRVLDI---SKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQIL 615
Query: 183 NITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRA 242
+ + C +L++L I +KL+ LD + L P GIG L+ L V G+ A
Sbjct: 616 DASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLE------VLLGFKPA 669
Query: 243 RSLGSLKKLNLLRECSIRGLG-GVSDAGEARRAELEKKKNLVELGLHFDRLRD--GDEEQ 299
RS K + ++R LG ++ + EL+ NL +L D GD+
Sbjct: 670 RSNNGCKLSEVKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISINCYDSYGDDLI 729
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRN 331
+ ++AL PP L EL + Y G+ +
Sbjct: 730 TK-------IDALTPPHQLHELSLQFYPGKSS 754
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 209/498 (41%), Gaps = 68/498 (13%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+ D+GE Y L R+ C +HD++ + L + E V++ S
Sbjct: 465 IRDVGESYIEELVRRNMVIAERDVTTLRFEACHLHDMMREVC-LLKAKEENFVQIASILP 523
Query: 61 LAINS----FGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLV--ESDDYSWFSEV 114
NS + + TLH + N K L+SLL+ E+ SW ++
Sbjct: 524 PTANSQYPGTSRRFVSQNPTTLHVSRDI-----NNPK----LQSLLIVWENRRKSW--KL 572
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
L F +L LR L L + K + +P+ I KL+HL+YL+L R + +LP +L
Sbjct: 573 LGSSFIRLELLRVLDL-----YKAKFEGRNLPSGIGKLIHLRYLNLDLAR-VSRLPSSLG 626
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLD---NDDTWFLRYLPVGIGELINLRRVT 231
L L L+I C +P + + +L YL N + + +G+ L+NL +
Sbjct: 627 NLRLLIYLDINVCTKSLFVPNCLMGMHELRYLRLPFNTS----KEIKLGLCNLVNLETLE 682
Query: 232 KFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR 291
F SL L+ + LR +I +S E A + ++L L + R
Sbjct: 683 NFSTENS-----SLEDLRGMVSLRTLTIGLFKHISK--ETLFASILGMRHLENLSI---R 732
Query: 292 LRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKN 351
DG + R E +L+A+ +LK+L + Y + +P ++L ++ L
Sbjct: 733 TPDGSSKFKRIMEDGIVLDAI----HLKQLNLRLYMPK---LPDEQHFP-SHLTSISLDG 784
Query: 352 CRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDM 411
C C PL P LE L +K V +F SS FP+L L + +
Sbjct: 785 C--CLVEDPL---PILEKLL-----ELKEVRLDFRAFCGKRMVSSDGGFPQLHRLYIWGL 834
Query: 412 EELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEER 471
E EEW +G MPRL L I C KLK LPD L +++ L + + +
Sbjct: 835 AEWEEW---IVEEGS---MPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDMDKK---WKE 885
Query: 472 CRKETGEDWPNIRHIPEL 489
E GE++ ++HIP +
Sbjct: 886 ILSEGGEEYYKVQHIPSV 903
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 132/509 (25%), Positives = 205/509 (40%), Gaps = 87/509 (17%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECL--TVEVHSG 58
++D GE Y L R+ + I C+MHD++ + E V+V +
Sbjct: 458 IQDTGESYLEELVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTT 517
Query: 59 EELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQL 118
IN+ + L LH G + + + G+ + L+ ++ W P+
Sbjct: 518 TSTTINA--QSPCRSRRLVLHSGNA--LHMLGHKDNKKARSVLIFGVEEKFW----KPRG 569
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
F L LR L L Q K+P++I L+HL++LSL + + LP +L L
Sbjct: 570 FQCLPLLRVLDLSYVQFE-----GGKLPSSIGDLIHLRFLSLY-EAGVSHLPSSLGNLKL 623
Query: 179 LERLNITSCNHL-RELPQGIGKLRKLMYLDNDDTWFLRYLPVG----IGELINLRRVTKF 233
L LN+ + L +P + ++++L YL R +P +G+L+NL +T F
Sbjct: 624 LLCLNLGVADRLLVHVPNVLKEMQELRYLR-----LPRSMPAKTKLELGDLVNLESLTNF 678
Query: 234 VVGGGYDRARSLGSLKKLNLLR-----ECSIRGLGGVSDAGEARRAELEKKKNLVELGLH 288
G L + KL++L EC+ E L + +NL L H
Sbjct: 679 STKHG--SVTDLLRMTKLSVLNVIFSGECTF----------ETLLLSLRELRNLETLSFH 726
Query: 289 FDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALL 348
D + E L+ +LK+L + + R P + +L +
Sbjct: 727 -----DFQKVSVANHGGELLVLDF---IHLKDLTLSMHLPR---FPDQYRFP-PHLAHIW 774
Query: 349 LKNCRNCEH-LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLK 407
L CR E +P L KL L+S+Y+ FLG FP+L LK
Sbjct: 775 LIGCRMEEDPMPILEKLLHLKSVYLSS--------GAFLGRRMVCSKG---GFPQLLALK 823
Query: 408 FYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467
+EL EW + E MP L L I C KLK LPD L T L++L I
Sbjct: 824 MSYKKELVEW------RVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKI----- 872
Query: 468 LEERCRKE-------TGEDWPNIRHIPEL 489
ER ++E GED+ ++HIP +
Sbjct: 873 --ERMKREWTERLVIGGEDYYKVQHIPSV 899
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 129/505 (25%), Positives = 207/505 (40%), Gaps = 83/505 (16%)
Query: 2 EDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNE--CLTVEVHSGE 59
E++ + Y N L R+ Q + G KMHD++ + A + E C S
Sbjct: 471 EEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDG 530
Query: 60 ELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF 119
+ A + HL + + P SI L SLLV S ++ +L
Sbjct: 531 DDAAETMENYGSRHLCI---QKEMTPDSIRAT-----NLHSLLVCSS-----AKHKMELL 577
Query: 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNL 179
L LRAL LE + I K+P + + +LKYL+L + ++++LP+ +L NL
Sbjct: 578 PSLNLLRALDLE-------DSSISKLPDCLVTMFNLKYLNL-SKTQVKELPKNFHKLVNL 629
Query: 180 ERLNITSCNHLRELPQGIGKLRKLMYL-------DNDDTWFL----RYLPVGIGELINLR 228
E LN T + + ELP G+ KL+KL YL +D W R +P I +L +L+
Sbjct: 630 ETLN-TKHSKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVP-KIWQLKDLQ 687
Query: 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLH 288
+ F + ++LG + +L + +R + G L K K +
Sbjct: 688 VMDCF--NAEDELIKNLGCMTQLTRISLVMVR-----REHGRDLCDSLNKIKR-----IR 735
Query: 289 FDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALL 348
F L DEE+ ++ L ++++L + G+ VP +W +L NL L
Sbjct: 736 FLSLTSIDEEEPLE------IDDLIATASIEKLFL---AGKLERVP-SWFNTLQNLTYLG 785
Query: 349 LKNCRNCEH-LPPLGKLPSLE--SLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKH 405
L+ + E+ + + LP L S Y M R F ++ I+ ++KH
Sbjct: 786 LRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLK-------ILEIVQMKH 838
Query: 406 LKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKL-LIGR 464
L T + E M L L + C L+ +P + LQ+L LI
Sbjct: 839 L--------------TEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHV 884
Query: 465 CPILEERCRKETGEDWPNIRHIPEL 489
L ER R E D ++HIP +
Sbjct: 885 SNQLVERIRGEGSVDRSRVKHIPAI 909
|
Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| 255549784 | 786 | leucine-rich repeat containing protein, | 0.957 | 0.599 | 0.437 | 3e-91 | |
| 359482788 | 903 | PREDICTED: putative disease resistance p | 0.918 | 0.500 | 0.446 | 5e-90 | |
| 147825450 | 927 | hypothetical protein VITISV_000086 [Viti | 0.924 | 0.490 | 0.447 | 8e-89 | |
| 359482792 | 922 | PREDICTED: putative disease resistance p | 0.914 | 0.488 | 0.449 | 7e-86 | |
| 359482790 | 923 | PREDICTED: putative disease resistance p | 0.918 | 0.489 | 0.439 | 1e-85 | |
| 359482784 | 919 | PREDICTED: putative disease resistance p | 0.916 | 0.490 | 0.436 | 2e-85 | |
| 359482769 | 904 | PREDICTED: putative disease resistance p | 0.922 | 0.502 | 0.430 | 2e-85 | |
| 224115620 | 963 | cc-nbs-lrr resistance protein [Populus t | 0.936 | 0.478 | 0.428 | 2e-85 | |
| 224110248 | 888 | cc-nbs-lrr resistance protein [Populus t | 0.936 | 0.519 | 0.417 | 7e-82 | |
| 224118674 | 960 | cc-nbs-lrr resistance protein [Populus t | 0.957 | 0.490 | 0.419 | 8e-82 |
| >gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 218/498 (43%), Positives = 300/498 (60%), Gaps = 27/498 (5%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME IGE+Y + LA SFF+ K D G + +CKM++IVHDFAQY+ NEC ++EV+ EE
Sbjct: 268 MERIGEKYLHNLAGHSFFEVVHKIDCGHVMSCKMYNIVHDFAQYIVKNECFSIEVNDEEE 327
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
L + S K++ HL + L + S P SI+ L+ LR+L V+ S L LF
Sbjct: 328 LKMMSL-HKEVRHLRVMLGKDVSFPSSIYR----LKDLRTLWVQCKGNSKVGAALSNLFG 382
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
+LTCLR+L L C + +IP++I KL+HL+ + L ++++ LPE LCEL NL+
Sbjct: 383 RLTCLRSLNLSN-----CN--LAEIPSSICKLIHLRQIDLSYNKDLKGLPEALCELCNLQ 435
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
LN+ C L +LP+G+ KL L +L N F LP GI +L LR + +F +G
Sbjct: 436 TLNMDGCFSLVKLPRGLEKLINLRHLHNGG--FEGVLPKGISKLTCLRSLNRFSIGQNNQ 493
Query: 241 RARSLGSLKKLNLLREC-SIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ 299
A +LG LK LN L+ C I GL V+D GEA++AEL KK + L L F + GD E
Sbjct: 494 EACNLGDLKNLNHLQGCLCIMGLEIVADVGEAKQAELRKKTEVTRLELRFGK---GDAEW 550
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP 359
+ + E LL AL P P ++EL I +Y+GR V P +W++ L+NL+ ++L NC+ CEHLP
Sbjct: 551 RKHHDDEILL-ALEPSPYVEELGIYDYQGR-TVFP-SWMIFLSNLKTVILTNCKTCEHLP 607
Query: 360 PLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW-- 417
PLGKLP LE+L I GM V++ G EFLG+ES + SS IAFPKL +L+F M E W
Sbjct: 608 PLGKLPFLENLRIWGMDGVQKAGLEFLGLESSSSSSSGIAFPKLINLRFMRMRNWEVWAD 667
Query: 418 DF----GTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCR 473
DF +I IMP+L L + C KLKA+PD L+K TLQ+L + P L+ +
Sbjct: 668 DFIRMGDEEDSTKITIMPQLRSLSFAWCSKLKAVPDQFLRKATLQELTLTCSPELKRAYQ 727
Query: 474 KETGEDWPNIRHIPELYI 491
K G+DW I HIP + I
Sbjct: 728 KGIGQDWHKISHIPNIKI 745
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 221/495 (44%), Positives = 290/495 (58%), Gaps = 43/495 (8%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME IG YF LA+RSFFQDF+KD DG I CKMHDIVHDFAQ+L NEC VEV + +
Sbjct: 441 MEMIGRTYFEYLAARSFFQDFEKDTDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQQM 500
Query: 61 LAIN-SFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF 119
+I+ SF KKI H+ L + +S + ++ L +LL + S LP L
Sbjct: 501 ESIDLSF--KKIRHITLVVRESTPNFVSTY----NMKNLHTLLAKEAFKSSVLVALPNLL 554
Query: 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNL 179
LTCLRAL L Q I+++P + KL+HL++L+L G + +LPET+C+LYNL
Sbjct: 555 RHLTCLRALDLSSNQ------LIEELPKEVGKLIHLRFLNLSGCFWLRELPETICDLYNL 608
Query: 180 ERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFL--RYLPVGIGELINLRRVTKFVVGG 237
+ LNI C+ LR+LPQ +GKL L +L+N FL + LP GIG L +L+ + F+V
Sbjct: 609 QTLNIQGCSSLRKLPQAMGKLINLRHLENS---FLNNKGLPKGIGRLSSLQTLNVFIVSS 665
Query: 238 GYDRARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGD 296
+ +G L+ LN LR + SI+GL V DAGEA +AEL+ K +L +L L FD
Sbjct: 666 HGNDEGQIGDLRNLNNLRGDLSIQGLDEVKDAGEAEKAELKNKVHLQDLTLGFD------ 719
Query: 297 EEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRN 354
R ++ + EAL P PNLK L I Y R NW+M SL L+ L LK C
Sbjct: 720 ----REEGTKGVAEALQPHPNLKALHIYYYGDRE---WPNWMMGSSLAQLKILNLKFCER 772
Query: 355 CEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEEL 414
C LPPLG+LP LE L I M VK +G+EFL GSS FPKLK L +++L
Sbjct: 773 CPCLPPLGQLPVLEELGIWKMYGVKYIGSEFL-------GSSSTVFPKLKELAISGLDKL 825
Query: 415 EEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCRK 474
++W+ K E IMP L+ L + GC KL+ LP +LQ+TTLQ L I PILE R RK
Sbjct: 826 KQWEIKE--KEERSIMPCLNHLIMRGCPKLEGLPGHVLQRTTLQILNIRSSPILERRYRK 883
Query: 475 ETGEDWPNIRHIPEL 489
+ GED I HIP++
Sbjct: 884 DIGEDRHKISHIPQV 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 221/494 (44%), Positives = 291/494 (58%), Gaps = 39/494 (7%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME +G YF LA+RSFFQDF+KDDDG I CKMHDIVHDFAQ+L NEC VEV + ++
Sbjct: 463 MEMVGRTYFEYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQNECFIVEVDNQKK 522
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
+++ F +K I H L + R ++ + N+K L L L E B S E L L
Sbjct: 523 GSMDLFFQK-IRHATLVV-RESTPNFASTCNMKNLHTL--LAKEEFBISXVLEALXNLLR 578
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
LTCLRAL L R R I+++P + KL+HL+YL+L + +LPET+C+LYNL+
Sbjct: 579 HLTCLRALDLS-RNR-----LIEELPKEVGKLIHLRYLNLSLCYRLRELPETICDLYNLQ 632
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
LNI C+ L++LPQ +GKL L +L+N +T L+ LP GIG L +L+ + F+V +
Sbjct: 633 TLNIEGCSSLQKLPQAMGKLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSSHGN 692
Query: 241 RARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ 299
+G L+ LN LR SI+ L V DAGEA +AEL+ + + L L F
Sbjct: 693 DECQIGDLRNLNNLRGGLSIQRLDEVKDAGEAEKAELKNRVHFQYLTLEF---------- 742
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRNCEH 357
++ ++ + EAL P PNLK L I Y R NW+M SL L+ L + NCR C
Sbjct: 743 GKKEGTKGVAEALQPHPNLKSLDIFNYGDRE---WPNWMMGSSLAQLKILEIGNCRRCPC 799
Query: 358 LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW 417
LP LG+LP LE L I GM VK +G+EFL GSS FPKLK L M+EL++W
Sbjct: 800 LPLLGQLPVLEKLDIWGMDGVKYIGSEFL-------GSSSTVFPKLKELNISRMDELKQW 852
Query: 418 DFGTAIKG--EIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCRKE 475
+ IKG E IMP L+ L C KL+ LPD +LQ+T LQKL I PILE R RK+
Sbjct: 853 E----IKGKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIIDSPILERRYRKD 908
Query: 476 TGEDWPNIRHIPEL 489
GED I HIPE+
Sbjct: 909 IGEDRHKISHIPEV 922
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 221/492 (44%), Positives = 293/492 (59%), Gaps = 42/492 (8%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME +G YF LA+RSFFQDF+KDDDG I CKMHDIVHDFAQ+L NEC VEV + ++
Sbjct: 463 MEMVGRTYFEYLAARSFFQDFEKDDDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQKK 522
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
+++ F + KI H L + S P + + ++ L +LL + ++ S VL L +
Sbjct: 523 GSMDLFFQ-KIRHATLVVRE--STP--NFASTCNMKNLHTLLAKK---AFDSRVLEALGN 574
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
LTCLRAL L R R I+++P + KL+HL+YL+L + +LPET+C+LYNL+
Sbjct: 575 -LTCLRALDLS-RNR-----LIEELPKEVGKLIHLRYLNLSLCYSLRELPETICDLYNLQ 627
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
LNI C +R+LPQ +GKL L +L+N +T L+ LP GIG L +L+ + F+V +
Sbjct: 628 TLNIQGCI-IRKLPQAMGKLINLRHLENYNTR-LKGLPKGIGRLSSLQTLDVFIVSSHGN 685
Query: 241 RARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ 299
+G L+ LN LR SI+GL V DAGEA +AEL+ K L L L F G EE
Sbjct: 686 DECQIGDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELKNKVYLQRLELKF-----GGEEG 740
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRNCEH 357
+ + EAL P PNLK L I Y R NW+M SL L+ L L+ C C
Sbjct: 741 TK-----GVAEALQPHPNLKSLDIFNYGDRE---WPNWMMGSSLAQLKILHLRFCIRCPC 792
Query: 358 LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW 417
LPPLG+LP LE L I M V+ +G+EFL GSS FPKLK L+ +M+EL++W
Sbjct: 793 LPPLGQLPILEELGILNMHGVQYIGSEFL-------GSSSTVFPKLKKLRISNMKELKQW 845
Query: 418 DFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCRKETG 477
+ K E IMP L+ L + C KL+ LPD +LQ+T LQKL I PILE R RK+ G
Sbjct: 846 EIKE--KEERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQKLYIKYSPILERRYRKDIG 903
Query: 478 EDWPNIRHIPEL 489
ED I HIPE+
Sbjct: 904 EDGHKISHIPEV 915
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 216/492 (43%), Positives = 289/492 (58%), Gaps = 40/492 (8%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME +G YF LA+RSFFQDF+KDDDG I CKMHDIVHDFAQ+L NEC VEV + ++
Sbjct: 464 MEMVGRTYFEYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDNQKK 523
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
+++ F +K I H L + S P + + ++ L +LL + ++ S VL L
Sbjct: 524 GSMDLFFQK-IRHATLVVRE--STPN--FASTCNMKNLHTLLAKR---AFDSRVLEAL-G 574
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
LTCLRAL L Q I+++P + KL+HL+YL+L + +LPET+C+LYNL+
Sbjct: 575 HLTCLRALDLRSNQ------LIEELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYNLQ 628
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
LNI +C+ L++LPQ +GKL L +L+N D L+ LP GIG L +L+ + F+V +
Sbjct: 629 TLNIQACSRLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSSHGN 688
Query: 241 RARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ 299
+ L+ LN LR SI+GL V DAGEA +AEL+ + +L L L F G EE
Sbjct: 689 DECQIEDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELQNRVHLQRLTLEF-----GGEEG 743
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRNCEH 357
+ + EAL P PNLK L I Y R NW+M SL L+ L L+ C C
Sbjct: 744 TK-----GVAEALQPHPNLKFLCIIRYGDRE---WPNWMMGSSLAQLKILHLRFCIRCPC 795
Query: 358 LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW 417
LPPLG+LP LE L I M +K +G+EFL GSS FPKLK L Y ++EL++W
Sbjct: 796 LPPLGQLPVLEELGICFMYGLKYIGSEFL-------GSSSTVFPKLKGLYIYGLDELKQW 848
Query: 418 DFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCRKETG 477
+ K E IMP L+ L C KL+ LPD +LQ+ LQKL I P+LE R RK+ G
Sbjct: 849 EIKE--KEERSIMPCLNALRAQHCPKLEGLPDHVLQRAPLQKLNIKYSPVLERRYRKDIG 906
Query: 478 EDWPNIRHIPEL 489
ED I HIPE+
Sbjct: 907 EDGHKISHIPEV 918
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/492 (43%), Positives = 288/492 (58%), Gaps = 41/492 (8%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME +G EYF LA+RSFFQDF+KD D +I CKMHDIVHDFAQ+L NEC VEV + ++
Sbjct: 463 MEMVGREYFEYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTQNECFVVEVDNQKK 522
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
+++ F + KI H L + + + ++ L +LL +S ++ S VL L
Sbjct: 523 GSMDLFFQ-KICHATLVVQESTLN----FASTCNMKNLHTLLAKS---AFDSRVLEAL-G 573
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
LTCLRAL L Q I+++P + KL+HL+YL L + + +LPET+C+LYNL+
Sbjct: 574 HLTCLRALDLSWNQ------LIEELPKEVGKLIHLRYLDLSRCQSLRELPETICDLYNLQ 627
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
LNI C L++LPQ +GKL L +L+N T L+ LP GIG L +L+ + F+V +
Sbjct: 628 TLNIQYCISLQKLPQAMGKLINLRHLEN-YTRSLKGLPKGIGRLSSLQTLDVFIVSSHGN 686
Query: 241 RARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ 299
+G L+ LN LR SI+GL V DAGEA +AEL+ + +L L L F G EE
Sbjct: 687 DECQIGDLRNLNNLRGGLSIQGLDEVKDAGEAEKAELKNRVSLHRLALVF-----GGEEG 741
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRNCEH 357
+ + EAL P PNLK L I Y R NW+M SL L+ L + NCR C
Sbjct: 742 TK-----GVAEALQPHPNLKSLCIYGYGDRE---WPNWMMGSSLAQLKILEIGNCRRCPC 793
Query: 358 LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW 417
LPPLG+LP LE L I M V +G+EFL GSS FPKLK L+ + ++EL++W
Sbjct: 794 LPPLGQLPVLEKLVIWKMYGVIYIGSEFL-------GSSSTVFPKLKELRIFGLDELKQW 846
Query: 418 DFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCRKETG 477
+ K E IMP L+ L C KL+ LPD +LQ+T LQKL I PIL+ R K+ G
Sbjct: 847 EIKE--KEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIEGSPILKRRYGKDIG 904
Query: 478 EDWPNIRHIPEL 489
ED I HIPE+
Sbjct: 905 EDRHKISHIPEV 916
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 213/495 (43%), Positives = 293/495 (59%), Gaps = 41/495 (8%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME +G YF LA+RSFFQDF+KD DG I C+MHDIVHDFAQ+L NEC VEV + ++
Sbjct: 444 MEMVGRTYFEYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQKK 503
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
+++ F + KI H L + S P + + ++ L +LL + ++ S VL L +
Sbjct: 504 GSMDLFFQ-KIRHATLVVRE--STP--NFASTCNMKNLHTLLAKE---AFDSRVLEALGN 555
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
LTCLRAL L ++I+++P + KL+HL+YL+L + +LPET+C+LYNL+
Sbjct: 556 -LTCLRALDLS------SNDWIEELPKEVGKLIHLRYLNLSWCESLRELPETICDLYNLQ 608
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
LNI C+ L++LP +GKL L +L+N T L+ LP GIG L +L+ + F+V +
Sbjct: 609 TLNIEGCSSLQKLPHAMGKLINLRHLEN-YTRSLKGLPKGIGRLSSLQTLDVFIVSSHGN 667
Query: 241 RARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ 299
+G L+ LN LR S+ GL V DAGE +AEL+ + + L L F G++E
Sbjct: 668 DECQIGDLRNLNNLRGRLSVEGLDEVKDAGEPEKAELKNRVHFQYLTLEF-----GEKEG 722
Query: 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM--SLTNLRALLLKNCRNCEH 357
+ + EAL P PNLK L I +Y R NW+M SL L+ L L C+ C
Sbjct: 723 TK-----GVAEALQPHPNLKSLGIVDYGDRE---WPNWMMGSSLAQLKILHLWFCKRCPC 774
Query: 358 LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEW 417
LPPLG+LP LE LYI GM VK +G+EFL GSS FPKLK L + EL++W
Sbjct: 775 LPPLGQLPVLEKLYIWGMDGVKYIGSEFL-------GSSSTVFPKLKELAISGLVELKQW 827
Query: 418 DFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEERCRKETG 477
+ K E IMP L+ L + GC KL+ LPD +LQ+T LQKL I PIL+ R RK+ G
Sbjct: 828 EIKE--KEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTPLQKLDIAGSPILKRRYRKDIG 885
Query: 478 EDWPNIRHIPELYID 492
ED I HIPE+ ++
Sbjct: 886 EDRHKISHIPEVEVE 900
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115620|ref|XP_002332101.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874921|gb|EEF12052.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/502 (42%), Positives = 292/502 (58%), Gaps = 41/502 (8%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDD-DGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGE 59
ME IG + F LA+RSFFQDF K+ DG I CKMHD+VHD AQ L NEC +V++
Sbjct: 466 MEVIGRQCFEALAARSFFQDFQKETGDGSIYACKMHDMVHDLAQNLTKNECSSVDIDGPT 525
Query: 60 ELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF 119
EL I+SF H ++ S P +I L+ LRSL+V+ D S + LP L
Sbjct: 526 ELKIDSFS-INARHSMVVFRNYNSFPATI----HSLKKLRSLIVDGDPSS-MNAALPNLI 579
Query: 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNL 179
L+CLR LKL C I+++P+NI KL+HL+++ I++LPE + ELYN+
Sbjct: 580 ANLSCLRTLKLSG-----CG--IEEVPSNIGKLIHLRHVDFSWNENIKELPEEMFELYNM 632
Query: 180 ERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRRVTKFVVGGG 238
L+++ CN L LP IG+L KL +L D L ++ + G+ L +LR + F V G
Sbjct: 633 LTLDVSFCNKLERLPDNIGRLAKLRHLSIHDWRDLSFVKMRGVKGLTSLRELDDFHVSGS 692
Query: 239 YDRARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDE 297
D+ ++G L+ LN L+ I LG V D E ++AEL KK+L LGL+F D +
Sbjct: 693 -DKESNIGDLRNLNHLQGSLMISWLGDVKDPDEVKKAELNSKKHLAHLGLNFQSRTDRE- 750
Query: 298 EQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357
+ + +LEAL PPPN+ I Y+G ++ R + + LRA+ L++ R E+
Sbjct: 751 ----KIHDDEVLEALEPPPNIYSSRIGYYQGV--ILLRVFPGWINKLRAVELRDWRKIEN 804
Query: 358 LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTD----------GSSIIAFPKLKHLK 407
LPPLGKLPSLE+L++ GM+ V RVG EFLG+ D+D ++IIAFPKLK L
Sbjct: 805 LPPLGKLPSLEALHVIGMECVGRVGREFLGLGDDSDISIGEMTSSSSNTIIAFPKLKSLS 864
Query: 408 FYDMEELEEW-------DFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKL 460
F+DMEE EEW + T I IIMP L LEI C KLKALPD +LQ TTL++L
Sbjct: 865 FWDMEEWEEWEGGEGGNEDKTNISISTIIMPSLRSLEIWDCPKLKALPDYVLQSTTLEQL 924
Query: 461 LIGRCPILEERCRKETGEDWPN 482
I PIL E+ KE G+ WPN
Sbjct: 925 KIRGSPILGEQYLKEGGKGWPN 946
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110248|ref|XP_002333128.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834939|gb|EEE73388.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 214/512 (41%), Positives = 298/512 (58%), Gaps = 51/512 (9%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
ME +GE YF++LA+RSFFQDF+ D E KMHDIVHDFAQY+ NECLTV+V++
Sbjct: 405 MELVGERYFHVLAARSFFQDFETDR-FEGMKFKMHDIVHDFAQYMTKNECLTVDVNTLGG 463
Query: 61 LAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFD 120
+ + E+ + HL + + S P+SI +GLRSLL+++ D S F LP LF
Sbjct: 464 ATVETSIER-VRHLSMMVSEETSFPVSI----HKAKGLRSLLIDTRDPS-FGAALPDLFK 517
Query: 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLE 180
+LTC+R+L L IK+IP + KL+HL++++L E+E LPET+C+L NL+
Sbjct: 518 QLTCIRSLDLSASS-------IKEIPNEVGKLIHLRHVNLARCGELESLPETMCDLCNLQ 570
Query: 181 RLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYD 240
L++T C L+ELP IGKL KL +L + + ++P GI + LR + F V GG +
Sbjct: 571 SLDVTWCRSLKELPNAIGKLIKLRHLRIYRSG-VDFIPKGIERITCLRTLDVFKVCGGGE 629
Query: 241 ---RARSLGSLKKLNLL-RECSIRGL-GGVSDAGEARRAELEKKKNLVELGLHFDRLRDG 295
+A +L LK LN + SIR L GG+ DA +A A+L+ KK L+ L L FD
Sbjct: 630 NESKAANLRELKNLNHIGGSFSIRNLGGGIEDASDAAEAQLKNKKRLLRLELGFD----- 684
Query: 296 DEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC 355
+E+ L+EAL PP +L+ L I Y G +P +W+M+LT L+ L L +C N
Sbjct: 685 -----YNQENGILIEALQPPSDLECLTISSYGGLD--LP-HWMMTLTRLQELRLDDCTNL 736
Query: 356 EHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGS-------SIIAFPKLKHLKF 408
E L PLG LP+LE L + ++ V+R+ FLG+E D + S + AFPKLK L F
Sbjct: 737 EVLRPLGGLPNLEILVLSSLK-VRRLDAGFLGIEKDENASINEGEIARVTAFPKLKRLDF 795
Query: 409 YDMEELEEWDFGTAIKGE--------IIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKL 460
+ E+EEW+ GE I IMP+L +L I C L+ALPD +L LQ+L
Sbjct: 796 RHLLEVEEWEGIERRVGEEDVNTTSIISIMPQLQYLRIINCPLLRALPDYVL-AAPLQEL 854
Query: 461 LIGRCPILEERC-RKETGEDWPNIRHIPELYI 491
I C IL +R ++E GEDW I HIP Y
Sbjct: 855 DIRWCTILRKRYGKEEMGEDWQKISHIPNSYF 886
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118674|ref|XP_002317879.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222858552|gb|EEE96099.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 210/501 (41%), Positives = 294/501 (58%), Gaps = 30/501 (5%)
Query: 2 EDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEEL 61
E +G++YF L +RSFFQ+ KD +G + CK+HD+VH+FAQ+L N+C+ VEV S +
Sbjct: 461 ELVGKDYFENLIARSFFQNAIKDGNGSTAACKVHDLVHEFAQFLTENDCVNVEVSSHGVI 520
Query: 62 AINSFGEKKILHLLLTL-HRGASVPISIWGNVKGLRGLRSLLVE--SDDYSWFSEVLPQL 118
+ S +K + HL + R AS P+S L+ LRSLLV+ DY L
Sbjct: 521 GMVSSWDK-VRHLKIEFSERNASFPVSF----ASLKNLRSLLVDYCKSDYPIVIGNQDDL 575
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
+LTCLRALKL ++I I KL+HL+YL L + ++ LPE + ELYN
Sbjct: 576 LSRLTCLRALKLSHISS-------EEISDKIGKLIHLRYLDLSDNQHLKYLPEEIGELYN 628
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238
L+ LN++ C L+ LP G+ +L L +L+N T L ++P GI L +L+ + KFVV
Sbjct: 629 LQTLNLSGCCELQRLPYGLCRLINLRHLNNYHTDKLTFMPRGIERLTSLKSLYKFVVNCS 688
Query: 239 Y---DRARSLGSLKKLNLLRE-CSIRGLGGVSDA-GEARRAELEKKKNLVELGLHFDRLR 293
Y + + +LG L+ LN LR+ I GLG +D EAR+A+L+KKK LV L L F R
Sbjct: 689 YHSRELSSTLGDLQNLNYLRKYLEISGLGNSTDMISEARKAQLKKKKQLVTLKLSFVECR 748
Query: 294 DGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353
+Q E +++AL PPP+L+ L I+ Y G + +P NW+M L L + + CR
Sbjct: 749 ALIHDQ-----DEEIIQALEPPPSLEHLEIEHYGGIKMKIP-NWMMQLAKLSKICISKCR 802
Query: 354 NCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESD--TDGSSIIAFPKLKHLKFYDM 411
NC +LPPLGKLP LE L I M+SV +VG+EFLG+E++ + AFPKLK L+F M
Sbjct: 803 NCNNLPPLGKLPFLEYLEISDMRSVHKVGDEFLGIETNHKENEDKKKAFPKLKELRFSHM 862
Query: 412 EELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILEER 471
+EWD A++ E +MP L L I C KL+ALP LLQ TTL++L + C L +
Sbjct: 863 YAWDEWDALIALEEE--VMPCLLRLYIGFCDKLEALPAQLLQMTTLEELAVDHCGSLGGQ 920
Query: 472 CRKETGEDWPNIRHIPELYID 492
G DW +I HIP +Y D
Sbjct: 921 YHWNVGVDWHHISHIPIIYFD 941
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.876 | 0.302 | 0.295 | 1.5e-31 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.800 | 0.373 | 0.282 | 1.7e-27 | |
| TAIR|locus:2146228 | 1245 | AT5G18350 [Arabidopsis thalian | 0.229 | 0.090 | 0.321 | 2.1e-10 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.434 | 0.235 | 0.278 | 2.2e-10 | |
| TAIR|locus:2098145 | 1240 | AT3G44630 [Arabidopsis thalian | 0.394 | 0.156 | 0.305 | 2.3e-10 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.441 | 0.239 | 0.261 | 6.4e-10 | |
| TAIR|locus:2163578 | 771 | AT5G45500 "AT5G45500" [Arabido | 0.306 | 0.195 | 0.329 | 9.8e-10 | |
| TAIR|locus:2197739 | 762 | AT1G61300 [Arabidopsis thalian | 0.274 | 0.177 | 0.281 | 6.6e-09 | |
| TAIR|locus:2008440 | 899 | AT1G61180 [Arabidopsis thalian | 0.274 | 0.150 | 0.281 | 7.1e-09 | |
| TAIR|locus:2031366 | 898 | AT1G63350 "AT1G63350" [Arabido | 0.209 | 0.114 | 0.288 | 1.8e-08 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 142/480 (29%), Positives = 224/480 (46%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
+EDIG +Y L ++SFFQ D +++ MHD+++D A+ + + C +E + E
Sbjct: 458 LEDIGNDYLGDLVAQSFFQRLDIT----MTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPE 513
Query: 61 LAINSFGEKKILHLLLTLHR-GASVPISIWGNVKGLRGLRSLLVESDDYSWFS-----EV 114
+ + H + + ASV ++ G LR++L + S S +V
Sbjct: 514 IPSTT------RHFSFSRSQCDASVAFR---SICGAEFLRTILPFNSPTSLESLQLTEKV 564
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
L L + L+ LR L L Q I +P +++ L L+YL L + I++LPE +C
Sbjct: 565 LNPLLNALSGLRILSLSHYQ-------ITNLPKSLKGLKLLRYLDLSSTK-IKELPEFVC 616
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234
L NL+ L +++C L LP+ I +L L LD T + +P GI +L +L++++ FV
Sbjct: 617 TLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFV 675
Query: 235 VGGGYDRARSLGSLKKLNLLR-ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLR 293
+G L LK+L+ LR I L V+ A EA+ A L++K L L L +
Sbjct: 676 IGRL--SGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKG 733
Query: 294 DG---DXXXXXXXXXXXXXXXXGPPPNLKELVIDEYRGRRNVVPRNWV--MSLTNLRALL 348
G P P+LK I+ Y+G P+ W+ S + ++
Sbjct: 734 SGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQG--GAFPK-WLGDSSFFGITSVT 790
Query: 349 LKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKF 408
L +C C LPP+G+LPSL+ L IE +++VG +F E+++ G + F L+ LKF
Sbjct: 791 LSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRG---VPFQSLQILKF 847
Query: 409 YDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL-KALPDXXXXXXXXXXXXIGRCPI 467
Y M +EW G I P L L I C L K P+ I CP+
Sbjct: 848 YGMPRWDEWICPELEDG---IFPCLQKLIIQRCPSLRKKFPEGLPSSTEVT---ISDCPL 901
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 120/425 (28%), Positives = 196/425 (46%)
Query: 34 MHDIVHDFAQYLCSNECLTVEVHSGEELAINSFGEKKILHLLLTLHRGASVPISIWGNVK 93
MHD +++ AQ+ S E + + G +L ++ + L L + + VK
Sbjct: 492 MHDFINELAQF-ASGE-FSSKFEDGCKLQVSE--RTRYLSYLRDNY-AEPMEFEALREVK 546
Query: 94 GLRGLRSLLVESDDYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEK 151
LR L + + S + V +L LT LR L L + I ++P + K
Sbjct: 547 FLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYK-------IARLPPDFFK 599
Query: 152 -LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDD 210
+ H ++L L + E+EKLP++LC +YNL+ L ++ C+ L+ELP I L L YLD
Sbjct: 600 NISHARFLDL-SRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIG 658
Query: 211 TWFLRYLPVGIGELINLRRVTKFVVGGGY-DRARSLGSLKKLNLLRECSIRGLGGVSDAG 269
T LR +P G L +L+ +T F V R LG L L+ + I L V D
Sbjct: 659 TK-LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLH--GKLKIVELQRVVDVA 715
Query: 270 EARRAELEKKKNLVELGLHF---DRLRDGDXXXXXXXXXXXXXXXXGPPPNLKELVIDEY 326
+A A L KK+L E+ + + + P ++++L I+ Y
Sbjct: 716 DAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERY 775
Query: 327 RGRRNVVPRNWVM--SLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNE 384
+GRR P +W+ S + + + L+ C+ C LP LG+LP L+ L+I GM ++ +G +
Sbjct: 776 KGRR--FP-DWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRK 832
Query: 385 FLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444
F + F L+ L+F ++ + +EW +G++ P L L I C +L
Sbjct: 833 FYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLF--PSLKKLFILRCPEL 890
Query: 445 KA-LP 448
LP
Sbjct: 891 TGTLP 895
|
|
| TAIR|locus:2146228 AT5G18350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 37/115 (32%), Positives = 59/115 (51%)
Query: 140 NFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199
NF +K+ I L LK + L ++++++P+ L NLE L+++SC+ L EL IGK
Sbjct: 633 NF-EKLWEKILPLKSLKRMDLSHSKDLKEIPD-LSNATNLEELDLSSCSGLLELTDSIGK 690
Query: 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254
L L L+ LP IG+ NL+ + F + +S+G L L +L
Sbjct: 691 ATNLKRLKLACCSLLKKLPSSIGDATNLQVLDLFHCESFEELPKSIGKLTNLKVL 745
|
|
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 67/241 (27%), Positives = 105/241 (43%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNE-CLTVEVHSGE 59
+ED GE Y L R+ D + C+MHD++ + E L + +
Sbjct: 459 IEDSGEYYLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTC 518
Query: 60 ELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVE--SDDYSWFSEVLPQ 117
IN+ + L ++H G + I G+ K +RSL+V +DY W
Sbjct: 519 TSTINAQSPSRSRRL--SIHSGKA--FHILGH-KNKTKVRSLIVPRFEEDY-WIRSA--S 570
Query: 118 LFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELY 177
+F LT LR L L W+ K K+P +I L+HL+YLSL + ++ LP T+ L
Sbjct: 571 VFHNLTLLRVLDLS----WV-KFEGGKLPCSIGGLIHLRYLSLY-EAKVSHLPSTMRNLK 624
Query: 178 NLERLNI-TSCNHLRELPQGIGKLRKLMYLD----NDDTWFLRYLPVGIGELINLRRVTK 232
L LN+ +P + ++ +L YL DD L +G+L+NL +
Sbjct: 625 LLLYLNLRVDTEEPIHVPNVLKEMIQLRYLSLPLKMDDKTKLE-----LGDLVNLEYLYG 679
Query: 233 F 233
F
Sbjct: 680 F 680
|
|
| TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 65/213 (30%), Positives = 99/213 (46%)
Query: 88 IWGNVKGLRGLRSL-LVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146
+W K LR L+ + L +S D + LP +KLT L+ L L R C + +K +P
Sbjct: 731 LWEGTKQLRNLKWMDLSDSRDL----KELPSSIEKLTSLQILDL--RD---CSSLVK-LP 780
Query: 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYL 206
+I +L+ LSL + KLP + + NL +L + +C+ L ELP IG L L
Sbjct: 781 PSINAN-NLQGLSLTNCSRVVKLP-AIENVTNLHQLKLQNCSSLIELPLSIGTANNLWKL 838
Query: 207 DNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRE--CS-IRGLG 263
D L LP IG++ NL+ + S+G+L+KL +LR CS + L
Sbjct: 839 DIRGCSSLVKLPSSIGDMTNLKEFDLSNCSNLVELPSSIGNLQKLFMLRMRGCSKLETLP 898
Query: 264 GVSDAGEARRAEL---EKKKNLVELGLHFDRLR 293
+ R +L + K+ E+ H LR
Sbjct: 899 TNINLISLRILDLTDCSQLKSFPEISTHISELR 931
|
|
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 62/237 (26%), Positives = 105/237 (44%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDD-DGEISTCKMHDIVHDFAQYLCSNE-CLTVEVHSG 58
+ D+ + Y L R+ ++D C++HD++ + E L +
Sbjct: 457 IRDVADLYIEELVKRNMVIS-ERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPT 515
Query: 59 EELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQL 118
+++S + L++ S+ S ++K + LRSLL YS FS +
Sbjct: 516 SSSSVHSLASSRSRRLVVY---NTSI-FSGENDMKNSK-LRSLLFIPVGYSRFS--MGSN 568
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
F +L LR L L+ + K K+P++I KL+HLKYLSL Q + LP +L L +
Sbjct: 569 FIELPLLRVLDLDGAK---FKG--GKLPSSIGKLIHLKYLSLY-QASVTYLPSSLRNLKS 622
Query: 179 LERLNIT-SCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKF 233
L LN+ + L +P ++ +L YL W L + +G L+ L + F
Sbjct: 623 LLYLNLRINSGQLINVPNVFKEMLELRYLSLP--WERSSLTKLELGNLLKLETLINF 677
|
|
| TAIR|locus:2163578 AT5G45500 "AT5G45500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 54/164 (32%), Positives = 85/164 (51%)
Query: 108 YSWFSEVLPQLFDKLTCLRAL--KLEVRQ--RW--LCKNFIK----KIPTNIEKLLHLKY 157
+ WFSE P +KLT + KL+V RW K I+ ++ N+++++ LK
Sbjct: 420 FKWFSEDKPTR-NKLTLSKVTYQKLKVFYLGRWERTAKRHIEVENPELMKNLKRMIKLKL 478
Query: 158 LSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYL 217
LS G IE+L + +C+L +L L++ +C +L +LP I L+ L+YLD D + + +
Sbjct: 479 LSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRM 538
Query: 218 PVGIGELINLRRVTKFVVGGGYDRAR--SLGSLKKLNLLRECSI 259
P + L NL + FVV D +L L L LR+ SI
Sbjct: 539 PKRLSWLDNLEVLKGFVVSDATDEETVCTLAELVHLKKLRKLSI 582
|
|
| TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 40/142 (28%), Positives = 75/142 (52%)
Query: 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPETLCELYN 178
+++TC E+ +L N +K + I + L L L R+ KLPE + L +
Sbjct: 413 EEITCESKCS-ELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVS 471
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRRVTKFVVGG 237
L+ L++++ + +++LP G+ KL+KL +L+ T +R + GI L++LR + + +
Sbjct: 472 LQFLDLSNTS-IKQLPVGLKKLKKLTFLNLAYT--VRLCSISGISRLLSLR-LLRLLGSK 527
Query: 238 GYDRARSLGSLKKLNLLRECSI 259
+ A L L+KL L+ +I
Sbjct: 528 VHGDASVLKELQKLQNLQHLAI 549
|
|
| TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 40/142 (28%), Positives = 75/142 (52%)
Query: 120 DKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
+++TC E+ +L N +K +P I + L L L R+ KLPE + L +
Sbjct: 524 EEITCESKCS-ELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVS 582
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRRVTKFVVGG 237
L+ L++++ + + +P G+ +L+KL +LD T+ R + GI L++LR + + +
Sbjct: 583 LQFLDLSNTS-IEHMPIGLKELKKLTFLDL--TYTDRLCSISGISRLLSLR-LLRLLGSK 638
Query: 238 GYDRARSLGSLKKLNLLRECSI 259
+ A L L++L L+E +I
Sbjct: 639 VHGDASVLKELQQLQNLQELAI 660
|
|
| TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 108 (43.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/111 (28%), Positives = 52/111 (46%)
Query: 338 VMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSI 397
+ S ++L + L NCR L L P+L+ L++ ++ + N+ D + S I
Sbjct: 731 ICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKA--HDGEKSGI 788
Query: 398 IAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP 448
+ FPKL L Y++ EL+ I + P L + + GC LK LP
Sbjct: 789 VPFPKLNELHLYNLRELKN------IYWSPLPFPCLEKINVMGCPNLKKLP 833
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 492 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.004 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 84/317 (26%), Positives = 127/317 (40%), Gaps = 62/317 (19%)
Query: 93 KGLRGLRSLLVESDDYSWFSEV---LPQLFDKLTC-LRALKLE-VRQRWLCKNF------ 141
KG+R L L + + EV LP+ FD L LR L+ + R + NF
Sbjct: 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614
Query: 142 --------IKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLREL 193
++K+ + L L+ + L G + ++++P+ L NLE L ++ C+ L EL
Sbjct: 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL 673
Query: 194 PQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253
P I L KL LD L LP GI +L SL +LNL
Sbjct: 674 PSSIQYLNKLEDLDMSRCENLEILPTGI----------------------NLKSLYRLNL 711
Query: 254 LRECSIRGLGGVS------DAGEARRAELEKK---KNLVELGLHFDRLRDGDEEQARRRE 304
++ +S D E E +NL EL L + E+ R
Sbjct: 712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILC-----EMKSEKLWERV 766
Query: 305 SER--LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLG 362
L+ L P+L L + + + P + + +L L L ++NC N E LP
Sbjct: 767 QPLTPLMTML--SPSLTRLFLSDIPSLVEL-PSS-IQNLHKLEHLEIENCINLETLPTGI 822
Query: 363 KLPSLESLYIEGMQSVK 379
L SLESL + G ++
Sbjct: 823 NLESLESLDLSGCSRLR 839
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 137 LCKNFIKKIPTNIEKL-LHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ 195
L N I IP I L +LK L L +IE LP L L NL+ L+++ N L +LP+
Sbjct: 123 LDNNNITDIPPLIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPK 180
Query: 196 GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230
+ L L LD LP I L L +
Sbjct: 181 LLSNLSNLNNLDLSGNKISD-LPPEIELLSALEEL 214
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 136 WLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ 195
L N I ++ +++ L +L L L + +E LPE++ L NLE L++ S N + +
Sbjct: 215 DLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDL-SNNQISSIS- 271
Query: 196 GIGKLRKLMYLDNDDTWFLRYLPV 219
+G L L LD LP+
Sbjct: 272 SLGSLTNLRELDLSGNSLSNALPL 295
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.97 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.94 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.93 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.92 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.88 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.81 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.76 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.71 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.64 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.61 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.59 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.53 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.53 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.53 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.52 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.51 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.5 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.5 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.39 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.09 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.02 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.96 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.94 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.91 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.87 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.86 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.78 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.77 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.74 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.74 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.73 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.72 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.59 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.57 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.56 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.53 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.49 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.4 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.34 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.31 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.18 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.01 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.96 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.92 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.87 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.81 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.71 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.71 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.68 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.68 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.62 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.61 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.55 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.52 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.39 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.15 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.99 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.59 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.12 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.02 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.7 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.66 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.29 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.06 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.96 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 92.75 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.14 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.89 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 90.37 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.21 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.21 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 87.86 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 82.97 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=286.31 Aligned_cols=412 Identities=21% Similarity=0.271 Sum_probs=269.4
Q ss_pred HHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhccce-------EEeecCCcccccccccCccceEEEEEEee
Q 011151 7 EYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNEC-------LTVEVHSGEELAINSFGEKKILHLLLTLH 79 (492)
Q Consensus 7 ~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 79 (492)
..++.|+++|||+.... .++|||++|+||+.++.++. +.+.......+.....++.+++.+.+...
T Consensus 470 ~~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 34889999999987542 48899999999999987652 33333322222222334467788777655
Q ss_pred cCCCcccccccCccCCCCceEEEeccCCc---cccccccchhhccCC-eeeEEecchhhhhhccccccccCchhhccCcC
Q 011151 80 RGASVPISIWGNVKGLRGLRSLLVESDDY---SWFSEVLPQLFDKLT-CLRALKLEVRQRWLCKNFIKKIPTNIEKLLHL 155 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L 155 (492)
.+.+... -..+|.++++|+.|.+..+.. ......+|..|..++ .|+.|++. ++.+..+|..+ .+.+|
T Consensus 543 ~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-------~~~l~~lP~~f-~~~~L 613 (1153)
T PLN03210 543 EIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-------KYPLRCMPSNF-RPENL 613 (1153)
T ss_pred ccceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-------CCCCCCCCCcC-CccCC
Confidence 5544111 112345899999999976531 112333566566654 58999998 88888888776 56889
Q ss_pred CEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 156 KYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 156 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
+.|++.++. +..+|..+..+++|+.|+++++..+..+|. ++.+++|+.|++++|.....+|..+..+++|+.|++..+
T Consensus 614 ~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 614 VKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 999999988 888888888899999999988876777775 788889999999998877888888888889999888876
Q ss_pred ecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh-------------
Q 011151 236 GGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR------------- 302 (492)
Q Consensus 236 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~------------- 302 (492)
.....++.. ..++.|+.+.+.++....... ...++|+.|+++++.+...+..-...
T Consensus 692 ~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 692 ENLEILPTG----INLKSLYRLNLSGCSRLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCcCccCCc----CCCCCCCEEeCCCCCCccccc-------cccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 544322221 146667777766664433211 12356777777777643322100000
Q ss_pred ----hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccc
Q 011151 303 ----RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSV 378 (492)
Q Consensus 303 ----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 378 (492)
......+.....+++|+.|++++|..... + |..+..+++|+.|++++|...+.+|....+++|+.|++++|..+
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 00000000011234566666666543332 4 55566666666666666655555555335666666666666544
Q ss_pred eeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCC
Q 011151 379 KRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQ 458 (492)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~ 458 (492)
..++. ..++|+.|++.++. ++ .+|.++..+++|+.|++++|+.++.+|..+..+++|+
T Consensus 839 ~~~p~---------------~~~nL~~L~Ls~n~-i~------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 839 RTFPD---------------ISTNISDLNLSRTG-IE------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred ccccc---------------cccccCEeECCCCC-Cc------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 33221 22456666655532 22 3567788999999999999999999998888999999
Q ss_pred eEEEeCCCchhhh
Q 011151 459 KLLIGRCPILEER 471 (492)
Q Consensus 459 ~L~l~~c~~l~~~ 471 (492)
.+++++|+.+++.
T Consensus 897 ~L~l~~C~~L~~~ 909 (1153)
T PLN03210 897 TVDFSDCGALTEA 909 (1153)
T ss_pred eeecCCCcccccc
Confidence 9999999988754
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=274.79 Aligned_cols=374 Identities=18% Similarity=0.173 Sum_probs=207.3
Q ss_pred cceEEEEEEeecCCC-cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccc-cccC
Q 011151 69 KKILHLLLTLHRGAS-VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFI-KKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~l~ 146 (492)
++++.+++++|.+.. .|..+. ++++|+.|++++|. +.+.+|..+.++++|++|+++ ++.+ ..+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~~p 205 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIG----SFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLA-------SNQLVGQIP 205 (968)
T ss_pred CCCCEEECcCCcccccCChHHh----cCCCCCEEECccCc---ccccCChhhhhCcCCCeeecc-------CCCCcCcCC
Confidence 678889998888763 555555 88889999998887 666677778888888888888 5554 3567
Q ss_pred chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
..+.++++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|++|++++|.+.+.+|..+..+++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 77888888888888888855577777888888888888888766677777788888888888888776677777777777
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChh--------------------hhhHhhhcccCCcceEe
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAG--------------------EARRAELEKKKNLVELG 286 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~--------------------~~~~~~l~~~~~L~~L~ 286 (492)
|+.|+++.+......+ ..+..++.|+.+.+.......... ......+..+++|+.|+
T Consensus 286 L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 286 LISLDLSDNSLSGEIP---ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred cCEEECcCCeeccCCC---hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 7777777665543222 222333444444333221110000 00112233344444444
Q ss_pred cccccCCCCchhhHh------------hhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccC
Q 011151 287 LHFDRLRDGDEEQAR------------RRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 287 l~~~~l~~~~~~~~~------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
+++|.+.+....... .......+..+..+++|+.|++++|.+... + |..+..+++|+.|++++|.+
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~-p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-L-PSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-C-ChhHhcCCCCCEEECcCCcc
Confidence 444443211100000 000011222233344444444444444321 2 44444455555555555544
Q ss_pred CCcCCC-CCCCCccceeeccccccceeecccccCCc-----------CCCCCCcccccccccceeccCcccccccccCcc
Q 011151 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVE-----------SDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTA 422 (492)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 422 (492)
.+.++. +..+++|+.|++++|.....++..+.... .......+..+++|+.|++++|. +.+.
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~ 514 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK------LSGE 514 (968)
T ss_pred cCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc------ceee
Confidence 443333 34455555555555543322221110000 00001112233334444433321 2233
Q ss_pred ccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 423 IKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+|..+..+++|+.|+|++|...+.+|..+..+++|+.|++++|..
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 455556666677777766655555666666677777777776654
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=271.54 Aligned_cols=358 Identities=20% Similarity=0.242 Sum_probs=187.0
Q ss_pred cceEEEEEEeecCCC-cccccccCccCCCCceEEEeccCCccccccccchhh-ccCCeeeEEecchhhhhhcccccc---
Q 011151 69 KKILHLLLTLHRGAS-VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF-DKLTCLRALKLEVRQRWLCKNFIK--- 143 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~--- 143 (492)
.+++.++++++.+.. .+..+. .+++|+.|++++|. +.+.+|..+ ..+++|++|+++ ++.+.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~----~l~~L~~L~Ls~n~---~~~~ip~~~~~~l~~L~~L~Ls-------~n~l~~~~ 134 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIF----RLPYIQTINLSNNQ---LSGPIPDDIFTTSSSLRYLNLS-------NNNFTGSI 134 (968)
T ss_pred CcEEEEEecCCCccccCChHHh----CCCCCCEEECCCCc---cCCcCChHHhccCCCCCEEECc-------CCcccccc
Confidence 356677777666554 233333 66777777777665 444344333 356666666666 43332
Q ss_pred --------------------ccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCC
Q 011151 144 --------------------KIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKL 203 (492)
Q Consensus 144 --------------------~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 203 (492)
.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|
T Consensus 135 p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred CccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 334445555555555555555333455555555555555555555444455555555555
Q ss_pred cEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcc
Q 011151 204 MYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV 283 (492)
Q Consensus 204 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 283 (492)
++|++++|.+.+.+|..+.++++|++|++..+..... ....+..+++|+.+.+....-.. .....+..+++|+
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~ 287 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP---IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLI 287 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc---cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcC
Confidence 5555555555445555555555555555554443321 12223333344443333221100 0112344555666
Q ss_pred eEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CC
Q 011151 284 ELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LG 362 (492)
Q Consensus 284 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~ 362 (492)
.|++++|.+ ....+..+..+++|+.|++++|.+... + |.++..+++|+.|++++|.+.+.+|. ++
T Consensus 288 ~L~Ls~n~l------------~~~~p~~~~~l~~L~~L~l~~n~~~~~-~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 288 SLDLSDNSL------------SGEIPELVIQLQNLEILHLFSNNFTGK-I-PVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred EEECcCCee------------ccCCChhHcCCCCCcEEECCCCccCCc-C-ChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 666666553 223444555667777777777766542 3 66666777777777777766665554 66
Q ss_pred CCCccceeeccccccceeecccccCCcC------------CCCCCcccccccccceeccCcccccccccCccccccccCC
Q 011151 363 KLPSLESLYIEGMQSVKRVGNEFLGVES------------DTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIM 430 (492)
Q Consensus 363 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~------------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 430 (492)
.+++|+.|++++|.....++..+..... .........+++|+.|++.+|. +.+.+|..+..+
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l 427 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTKL 427 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE------eeeECChhHhcC
Confidence 6777777777776633333322211000 0001112344555555555443 222344555566
Q ss_pred CCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 431 PRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 431 ~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 6677777766554445555555667777777777654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-28 Score=227.45 Aligned_cols=345 Identities=17% Similarity=0.202 Sum_probs=236.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-c
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-T 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~ 147 (492)
...+.|++++|.+.++...++ .++++|+.+.+..|. ++. +|.+.....+|+.|+|. +|.+..+. +
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f---~nl~nLq~v~l~~N~---Lt~-IP~f~~~sghl~~L~L~-------~N~I~sv~se 143 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFF---YNLPNLQEVNLNKNE---LTR-IPRFGHESGHLEKLDLR-------HNLISSVTSE 143 (873)
T ss_pred cceeeeeccccccccCcHHHH---hcCCcceeeeeccch---hhh-cccccccccceeEEeee-------ccccccccHH
Confidence 456667777777766443322 267777777777776 555 66644455567777777 77776664 3
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.+..++.||.|+|+.|. +.++|.. +..-.++++|++++|.+...-...+.++.+|..|.+++|++....+..+.++++
T Consensus 144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 46667777777777777 6666543 555567888888888743333345677778888888888775555556777888
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceE--ecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhh
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSI--RGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRE 304 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~--~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 304 (492)
|+.|++..+..... ....++.|..|+.+.+ +.+....+ ..+-.+.++++|++..|++
T Consensus 223 L~~LdLnrN~iriv---e~ltFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l------------ 281 (873)
T KOG4194|consen 223 LESLDLNRNRIRIV---EGLTFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRL------------ 281 (873)
T ss_pred hhhhhccccceeee---hhhhhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchh------------
Confidence 88888887766531 1222333444443322 33333333 4467788999999999884
Q ss_pred HHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecc
Q 011151 305 SERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
....-.++..++.|+.|+++.|.+.. +.+.....+++|+.|+|++|.+..--+. +..+..|++|.|+.|+ +..+.+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e 358 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE 358 (873)
T ss_pred hhhhcccccccchhhhhccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh
Confidence 33344567788999999999999888 7677788899999999999977654333 7778889999999988 655555
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEE
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLI 462 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l 462 (492)
..+. .+.+|++|+++++. +. |++.+ -...+..+|+|++|.+.| ++++.|| ..+..+++||+|++
T Consensus 359 ~af~-----------~lssL~~LdLr~N~-ls-~~IED-aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 359 GAFV-----------GLSSLHKLDLRSNE-LS-WCIED-AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hHHH-----------HhhhhhhhcCcCCe-EE-EEEec-chhhhccchhhhheeecC-ceeeecchhhhccCcccceecC
Confidence 4433 67789999887753 22 22221 113456789999999999 6888887 45777899999999
Q ss_pred eCCCc
Q 011151 463 GRCPI 467 (492)
Q Consensus 463 ~~c~~ 467 (492)
.+|+.
T Consensus 424 ~~Nai 428 (873)
T KOG4194|consen 424 GDNAI 428 (873)
T ss_pred CCCcc
Confidence 99875
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-27 Score=244.90 Aligned_cols=196 Identities=28% Similarity=0.402 Sum_probs=165.8
Q ss_pred ChhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhc-----cceEEeecC-CcccccccccCccceEEE
Q 011151 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCS-----NECLTVEVH-SGEELAINSFGEKKILHL 74 (492)
Q Consensus 1 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l 74 (492)
++|.|++|+.+|+++||++..+.. ++..+|+|||+||+||.++++ .++.++..+ +..+.+....| ..+|++
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~ 528 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRM 528 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEE
Confidence 479999999999999999998754 777899999999999999999 666555554 44455555555 699999
Q ss_pred EEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCc
Q 011151 75 LLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLH 154 (492)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~ 154 (492)
++.++.+..++.+. +++.|++|.+..|.. ++.....++|..++.|++|||++ +..+..+|..++++-+
T Consensus 529 s~~~~~~~~~~~~~-----~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~------~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSS-----ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSG------NSSLSKLPSSIGELVH 596 (889)
T ss_pred EEeccchhhccCCC-----CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCC------CCccCcCChHHhhhhh
Confidence 99999998766655 678999999999864 34554667789999999999995 5667899999999999
Q ss_pred CCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCc
Q 011151 155 LKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 155 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 212 (492)
||||+++++. +..+|..++++++|.+|++..+.....+|.....+++|++|.+....
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999 99999999999999999999988666776666679999999987653
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-28 Score=233.88 Aligned_cols=344 Identities=21% Similarity=0.239 Sum_probs=262.2
Q ss_pred cCccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-
Q 011151 66 FGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK- 144 (492)
Q Consensus 66 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~- 144 (492)
..+..++-+-+....+..+|..+. .+.+|+.|.+.+|. +.. +...+..++.||.+.+. .|.+..
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~----~lqkLEHLs~~HN~---L~~-vhGELs~Lp~LRsv~~R-------~N~LKns 93 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELS----RLQKLEHLSMAHNQ---LIS-VHGELSDLPRLRSVIVR-------DNNLKNS 93 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHH----HHhhhhhhhhhhhh---hHh-hhhhhccchhhHHHhhh-------ccccccC
Confidence 334567777777778887888777 88888888888887 555 33337778888888888 666643
Q ss_pred -cCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccc-cCCCCCcEEecCCCccccccccccc
Q 011151 145 -IPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 145 -l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
+|..+..+..|+.|+|++|+ +++.|..+.+.+++-+|++++|. ++.+|..+ -++.-|-.||+++|++ +.+|+.+.
T Consensus 94 GiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh-hhcCHHHH
Confidence 78888888999999999998 88899888888999999999988 88888654 4788888899998865 77888888
Q ss_pred ccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh
Q 011151 223 ELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302 (492)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 302 (492)
.+..|++|.+++++.. ..-+..++.++.|+.+++.+-+... ..++..+.++.+|+.++++.|.+
T Consensus 171 RL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~L---------- 234 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENNL---------- 234 (1255)
T ss_pred HHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccCC----------
Confidence 8889999988888765 3345666667777777666543321 22335678888999999999885
Q ss_pred hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeec
Q 011151 303 RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 303 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
..+|..+-++++|+.|+|++|.+++ + ......-.+|+.|+++.|+++.-+..+..+++|+.|++.+|+ +.
T Consensus 235 ---p~vPecly~l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~--- 304 (1255)
T KOG0444|consen 235 ---PIVPECLYKLRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LT--- 304 (1255)
T ss_pred ---CcchHHHhhhhhhheeccCcCceee--e-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cc---
Confidence 4567777788999999999999888 6 545556678999999999665544448889999999998876 22
Q ss_pred ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEE
Q 011151 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLI 462 (492)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 462 (492)
|.|. ++.++.+.+|+.+...++. | +.+|..+..|+.|+.|.++. +.+-.+|..+.-++.|+.||+
T Consensus 305 --FeGi-----PSGIGKL~~Levf~aanN~-L------ElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 305 --FEGI-----PSGIGKLIQLEVFHAANNK-L------ELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred --ccCC-----ccchhhhhhhHHHHhhccc-c------ccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeec
Confidence 1111 1224477788887776643 2 33677888999999999977 566668999999999999999
Q ss_pred eCCCch
Q 011151 463 GRCPIL 468 (492)
Q Consensus 463 ~~c~~l 468 (492)
+.||++
T Consensus 370 reNpnL 375 (1255)
T KOG0444|consen 370 RENPNL 375 (1255)
T ss_pred cCCcCc
Confidence 999975
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-26 Score=216.02 Aligned_cols=341 Identities=19% Similarity=0.225 Sum_probs=259.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
++++.+.+..|.+..+|.... ...+|+.|++.+|. +...-.+.++.++.||+|||+ .|.+..+|.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~----~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLS-------rN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGH----ESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLS-------RNLISEIPKP 167 (873)
T ss_pred Ccceeeeeccchhhhcccccc----cccceeEEeeeccc---cccccHHHHHhHhhhhhhhhh-------hchhhcccCC
Confidence 689999999999999887665 67789999999998 555555778899999999999 999999884
Q ss_pred hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
++..-.++++|+|++|. ++.+.. .|..+.+|-.|.++.|+ +..+|. .+.++++|+.|++..|.+....-..+..++
T Consensus 168 sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 47777899999999999 776644 37788899999999999 777775 466799999999999976433234577889
Q ss_pred cccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 226 NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
+|+.|.+..+....-....+-.+.++..|. |..+.+..+.. ..+-++++|+.|+++.|.+.
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~-L~~N~l~~vn~------g~lfgLt~L~~L~lS~NaI~------------ 306 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLN-LETNRLQAVNE------GWLFGLTSLEQLDLSYNAIQ------------ 306 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceee-cccchhhhhhc------ccccccchhhhhccchhhhh------------
Confidence 999999988876642222333344444332 33344444433 45778999999999999953
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeeccc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNE 384 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~ 384 (492)
..-++.+..++.|+.|+|+.|.++. +++..+..+..|+.|+|+.|.+...-.. +..+.+|++|+|++|. +....+.
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IED 383 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED 383 (873)
T ss_pred eeecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec
Confidence 3345677788999999999999999 8788899999999999999965443322 7789999999999987 4433332
Q ss_pred ccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccC-CcccCCCCCCCeEEEe
Q 011151 385 FLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL-PDLLLQKTTLQKLLIG 463 (492)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~ 463 (492)
..+ ...++|+|+.|.+.++. ++.+.- .++..+++|+.|++.+|. +.+| |..++.+ .|++|.+.
T Consensus 384 aa~--------~f~gl~~LrkL~l~gNq-lk~I~k-----rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 384 AAV--------AFNGLPSLRKLRLTGNQ-LKSIPK-----RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chh--------hhccchhhhheeecCce-eeecch-----hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 221 13379999999998864 666542 457789999999999854 5544 5666666 88888655
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-27 Score=223.03 Aligned_cols=342 Identities=17% Similarity=0.227 Sum_probs=275.1
Q ss_pred cceEEEEEEeecCCC--cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC
Q 011151 69 KKILHLLLTLHRGAS--VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 146 (492)
+=+|.+++++|..+. +|.++ +.++.++-|.+.... +.. +|+.++.+.+|++|.++ +|.+..+-
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v----~qMt~~~WLkLnrt~---L~~-vPeEL~~lqkLEHLs~~-------HN~L~~vh 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV----EQMTQMTWLKLNRTK---LEQ-VPEELSRLQKLEHLSMA-------HNQLISVH 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH----HHhhheeEEEechhh---hhh-ChHHHHHHhhhhhhhhh-------hhhhHhhh
Confidence 467888899998873 45444 488889988887765 555 88889999999999999 88888887
Q ss_pred chhhccCcCCEEEccCCCCcc--ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccc-ccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVG-IGE 223 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~ 223 (492)
..+..++.||.+.++.|+ ++ .+|..+.++..|.+||+++|. ++..|..+....++-+|++++|++ +.+|.. +.+
T Consensus 72 GELs~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfin 148 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFIN 148 (1255)
T ss_pred hhhccchhhHHHhhhccc-cccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHh
Confidence 888899999999999998 54 688899999999999999999 889999999999999999999977 556654 457
Q ss_pred cccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhh
Q 011151 224 LINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRR 303 (492)
Q Consensus 224 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 303 (492)
+..|-.|+++.+.... .+..++.|..|+.+.+++- | ........+..+++|+.|.+++.+ +
T Consensus 149 LtDLLfLDLS~NrLe~----LPPQ~RRL~~LqtL~Ls~N---P-L~hfQLrQLPsmtsL~vLhms~Tq-----------R 209 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEM----LPPQIRRLSMLQTLKLSNN---P-LNHFQLRQLPSMTSLSVLHMSNTQ-----------R 209 (1255)
T ss_pred hHhHhhhccccchhhh----cCHHHHHHhhhhhhhcCCC---h-hhHHHHhcCccchhhhhhhccccc-----------c
Confidence 7788888888887654 6677777888888776652 1 222333556777888888888766 3
Q ss_pred hHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecc
Q 011151 304 ESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 304 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
+...+|..+..+.+|..++++.|+... + |+.+-++++|+.|+|++|.++.---..+...+|++|+++.|+ +..++.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~--v-Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~ 285 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPI--V-PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPD 285 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCc--c-hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchH
Confidence 567788888899999999999999988 8 888889999999999999776543345667789999999998 555554
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEe
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIG 463 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~ 463 (492)
.+. .+++|+.|...++. +.| +.+|+.++.+..|+.+...+ +++.-+|.++..|+.|++|.++
T Consensus 286 avc------------KL~kL~kLy~n~Nk----L~F-eGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 286 AVC------------KLTKLTKLYANNNK----LTF-EGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred HHh------------hhHHHHHHHhccCc----ccc-cCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence 432 78899999877654 334 34789999999999999988 7889999999999999999999
Q ss_pred CCCchh
Q 011151 464 RCPILE 469 (492)
Q Consensus 464 ~c~~l~ 469 (492)
.|..++
T Consensus 348 ~NrLiT 353 (1255)
T KOG0444|consen 348 HNRLIT 353 (1255)
T ss_pred ccceee
Confidence 887643
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=221.97 Aligned_cols=340 Identities=19% Similarity=0.207 Sum_probs=225.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.++|.+.+.++.+..+|..+ ...+|+.|++.++. +.. ++..+..+++|+.|+|++ ...+..+|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L~~s~---l~~-L~~~~~~l~~Lk~L~Ls~------~~~l~~ip~- 652 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-----RPENLVKLQMQGSK---LEK-LWDGVHSLTGLRNIDLRG------SKNLKEIPD- 652 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-----CccCCcEEECcCcc---ccc-cccccccCCCCCEEECCC------CCCcCcCCc-
Confidence 45777777777766666654 45777777777776 544 555566777788888873 334556653
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+..+++|++|++++|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|++++|.....+|.. ..+|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 6677788888888777677777777778888888888777677777655 6777888888877655555532 34566
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCC--C-hhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVS--D-AGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~--~-~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
.|++..+.... .+ ..-.+.+|+.+.+..+.... . ............++|+.|++++|. ..
T Consensus 729 ~L~L~~n~i~~-lP----~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~------------~l 791 (1153)
T PLN03210 729 WLDLDETAIEE-FP----SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP------------SL 791 (1153)
T ss_pred eeecCCCcccc-cc----ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC------------Cc
Confidence 66666554332 11 11123344444333221100 0 000000112345789999999886 23
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEF 385 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 385 (492)
..+|..+..+++|+.|++++|..... + |..+ .+++|+.|++++|.....+|.. .++|+.|++++|. ++.++..
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s- 864 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW- 864 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH-
Confidence 44677788999999999999865553 6 5444 7899999999999887777664 4689999999876 5555543
Q ss_pred cCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcc-------------cC
Q 011151 386 LGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDL-------------LL 452 (492)
Q Consensus 386 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-------------l~ 452 (492)
+..+++|+.|++.+|++++.+.. .+..+++|+.+++++|..++.++.. ..
T Consensus 865 -----------i~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~ 927 (1153)
T PLN03210 865 -----------IEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHS 927 (1153)
T ss_pred -----------HhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccc
Confidence 23789999999999999987554 3458899999999999988754311 01
Q ss_pred CCCCCCeEEEeCCCchh
Q 011151 453 QKTTLQKLLIGRCPILE 469 (492)
Q Consensus 453 ~l~~L~~L~l~~c~~l~ 469 (492)
.++....+.+.+|.++.
T Consensus 928 ~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 928 KLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCCchhccccccccCCC
Confidence 23334455667777665
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-25 Score=200.88 Aligned_cols=260 Identities=23% Similarity=0.254 Sum_probs=168.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.....+.+.+|.+..+..++. ++..+.+|.+.+|. ... +|.+++.+..++.|+.+ .+.+..+|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~----nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs-------~n~ls~lp~~ 109 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK----NLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVS-------HNKLSELPEQ 109 (565)
T ss_pred cchhhhhhccCchhhccHhhh----cccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcc-------cchHhhccHH
Confidence 456677888888877666665 88888888888887 666 66668888888888888 8888888888
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+..+.+|+.|+.++|. ..++|+.++.+..|+.|+..+|+ +..+|.++..+.+|..|++.++.. ..+|+..-+++.|+
T Consensus 110 i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLK 186 (565)
T ss_pred Hhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHH
Confidence 8888888888888888 78888888888888888888888 778888888888888888888866 34444444478888
Q ss_pred ccceEEeecccCCCcCccccccccccCCceE--ecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSI--RGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~--~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
+|+...+.... .+.++..++.|..+++ +.+..+| .+.+|..|.++.++.|.+ .
T Consensus 187 ~ld~~~N~L~t----lP~~lg~l~~L~~LyL~~Nki~~lP--------ef~gcs~L~Elh~g~N~i-------------~ 241 (565)
T KOG0472|consen 187 HLDCNSNLLET----LPPELGGLESLELLYLRRNKIRFLP--------EFPGCSLLKELHVGENQI-------------E 241 (565)
T ss_pred hcccchhhhhc----CChhhcchhhhHHHHhhhcccccCC--------CCCccHHHHHHHhcccHH-------------H
Confidence 88766665443 3334444444444322 2222222 244555555555555542 2
Q ss_pred HHhhhcC-CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeecccc
Q 011151 307 RLLEALG-PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGM 375 (492)
Q Consensus 307 ~~~~~l~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~ 375 (492)
.++.... .++++..|+++.|...+ + |..+..+.+|.+||+++|.+..-++.++++ .|+.|.+.+|
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred hhHHHHhcccccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 2222222 34555555555555555 4 555555555555555555444433335555 4555555444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-22 Score=180.50 Aligned_cols=352 Identities=22% Similarity=0.249 Sum_probs=187.5
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhh------------
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWL------------ 137 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------------ 137 (492)
.+..+.++++.....|.++. .+..++.+++++|. +.. +|+..+....|+.|+.+..+-..
T Consensus 69 ~l~vl~~~~n~l~~lp~aig----~l~~l~~l~vs~n~---ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIG----ELEALKSLNVSHNK---LSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred ceeEEEeccchhhhCCHHHH----HHHHHHHhhcccch---Hhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 44455555555555555544 55555555555554 333 44444444555555554000000
Q ss_pred ----ccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcc
Q 011151 138 ----CKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 138 ----~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
.++.+..+|..+.++..|..|++.+|. ++.+|+..-+++.|++||...|- ++.+|..++.+.+|..|++..|.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccc
Confidence 044444445444455555555555555 44454444445555555555555 555666666666666666666644
Q ss_pred cccccccccccccccccceEEeecccCCCcCccc-cccccccCCceEe--cCCCCCChhhhhHhhhcccCCcceEecccc
Q 011151 214 LRYLPVGIGELINLRRVTKFVVGGGYDRARSLGS-LKKLNLLRECSIR--GLGGVSDAGEARRAELEKKKNLVELGLHFD 290 (492)
Q Consensus 214 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~~l~~~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 290 (492)
..+| +++.++.|++|+++.+.... ..++ ++++..+..+++. .+..+| ..+.-+++|+.|++++|
T Consensus 219 -~~lP-ef~gcs~L~Elh~g~N~i~~----lpae~~~~L~~l~vLDLRdNklke~P-------de~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 219 -RFLP-EFPGCSLLKELHVGENQIEM----LPAEHLKHLNSLLVLDLRDNKLKEVP-------DEICLLRSLERLDLSNN 285 (565)
T ss_pred -ccCC-CCCccHHHHHHHhcccHHHh----hHHHHhcccccceeeeccccccccCc-------hHHHHhhhhhhhcccCC
Confidence 3444 56666666666666555442 1222 2344444444442 233344 34666778888999988
Q ss_pred cCCCCchh---------------------hHhhhhHHHHhhhc------------------------------CCCCC--
Q 011151 291 RLRDGDEE---------------------QARRRESERLLEAL------------------------------GPPPN-- 317 (492)
Q Consensus 291 ~l~~~~~~---------------------~~~~~~~~~~~~~l------------------------------~~~~~-- 317 (492)
.++..++. ++-+..+..+...+ ....+
T Consensus 286 ~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk 365 (565)
T KOG0472|consen 286 DISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK 365 (565)
T ss_pred ccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence 88776654 00000000000000 00001
Q ss_pred ------------------------ccEEEEeecCCCcccc-----------------------CchhhhccccccEEEEe
Q 011151 318 ------------------------LKELVIDEYRGRRNVV-----------------------PRNWVMSLTNLRALLLK 350 (492)
Q Consensus 318 ------------------------L~~L~l~~~~~~~~~l-----------------------~~~~~~~l~~L~~L~L~ 350 (492)
...+++++|...+ + +|..++.+++|+.|+++
T Consensus 366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e--lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE--LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhcccccccccCCHHHHHHhhhcceEEEecccchHhh--hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 2344444444333 2 13345567777777777
Q ss_pred cccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccC
Q 011151 351 NCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIII 429 (492)
Q Consensus 351 ~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 429 (492)
+| ...++|. ++.+..|++|+++.|+ ...+++-.. ...-|+.+ +.....+..+ -|..+..
T Consensus 444 NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y------------~lq~lEtl-las~nqi~~v-----d~~~l~n 503 (565)
T KOG0472|consen 444 NN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLY------------ELQTLETL-LASNNQIGSV-----DPSGLKN 503 (565)
T ss_pred cc-hhhhcchhhhhhhhhheecccccc-cccchHHHh------------hHHHHHHH-Hhcccccccc-----ChHHhhh
Confidence 66 4445554 6667777777777765 233332221 11223332 2222223332 2345789
Q ss_pred CCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 430 MPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.+|+.|++.+ +.+..+|..++++.+|++|+++|||-
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 99999999988 67888999999999999999999984
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-20 Score=184.41 Aligned_cols=335 Identities=21% Similarity=0.213 Sum_probs=159.7
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhh
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIE 150 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 150 (492)
+++++++.|.+..+|..+. .+++|+.|.++.|. +.. +|.....+.+|++|.|. ++.+..+|.++.
T Consensus 47 L~~l~lsnn~~~~fp~~it----~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~-------~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQIT----LLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLK-------NNRLQSLPASIS 111 (1081)
T ss_pred eEEeeccccccccCCchhh----hHHHHhhcccchhh---Hhh-Cchhhhhhhcchhheec-------cchhhcCchhHH
Confidence 4455555555554444444 45555555555554 333 44444555555555555 555555555555
Q ss_pred ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 230 (492)
.+.+|++|++++|. ...+|.-+..+..++.+..++|..+..++. . .++++++..+.+...++.++..+.. .|
T Consensus 112 ~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred hhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcc----c-cchhhhhhhhhcccchhcchhhhhe--ee
Confidence 55555555555555 444554444454555555544421222211 0 1444445444444444544444443 34
Q ss_pred ceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhh
Q 011151 231 TKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLE 310 (492)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 310 (492)
++..+... ...+..+..|+.+.....+-.. .-..-++|+.|...+|.+.. ..
T Consensus 184 dLr~N~~~------~~dls~~~~l~~l~c~rn~ls~--------l~~~g~~l~~L~a~~n~l~~--------------~~ 235 (1081)
T KOG0618|consen 184 DLRYNEME------VLDLSNLANLEVLHCERNQLSE--------LEISGPSLTALYADHNPLTT--------------LD 235 (1081)
T ss_pred ecccchhh------hhhhhhccchhhhhhhhcccce--------EEecCcchheeeeccCccee--------------ec
Confidence 44444332 1112222222222211110000 00112344444444444210 11
Q ss_pred hcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc-----------------------CCCcCCCCCCCCcc
Q 011151 311 ALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR-----------------------NCEHLPPLGKLPSL 367 (492)
Q Consensus 311 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~-----------------------~~~~~~~l~~l~~L 367 (492)
.-+.+.+|++++++++.+.. + |+|+..+.+|+.+....|. .....+.+..+..|
T Consensus 236 ~~p~p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred cccccccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence 11223345555555555444 4 4555555555555544443 33223335557788
Q ss_pred ceeeccccccceeecccccCCcCC--------------CCCCcccccccccceeccCcccccccccCccccccccCCCCc
Q 011151 368 ESLYIEGMQSVKRVGNEFLGVESD--------------TDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRL 433 (492)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 433 (492)
++|+|..|. +...+..++..... .-...-..++.|+.|++.++. +++-++ ..+-.++.|
T Consensus 313 ~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~-----p~l~~~~hL 385 (1081)
T KOG0618|consen 313 RTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCF-----PVLVNFKHL 385 (1081)
T ss_pred eeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccch-----hhhccccce
Confidence 888887776 44443332222110 001112245566666666643 544443 235577888
Q ss_pred ceEeecCCCCcccCC-cccCCCCCCCeEEEeCCCc
Q 011151 434 SFLEISGCCKLKALP-DLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 434 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++ +.++.+| ..+.+++.|++|+++||..
T Consensus 386 KVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 386 KVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred eeeeecc-cccccCCHHHHhchHHhHHHhcccchh
Confidence 8888888 6777777 3466788888888888863
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-19 Score=176.71 Aligned_cols=344 Identities=21% Similarity=0.194 Sum_probs=210.8
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++++.+++|.+..+|.+.. ++++|+.|.+.+|. .+. .|..+..+++|.+|+++ .+....+|..
T Consensus 68 ~~L~~ln~s~n~i~~vp~s~~----~~~~l~~lnL~~n~---l~~-lP~~~~~lknl~~LdlS-------~N~f~~~Pl~ 132 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIRSVPSSCS----NMRNLQYLNLKNNR---LQS-LPASISELKNLQYLDLS-------FNHFGPIPLV 132 (1081)
T ss_pred HHHhhcccchhhHhhCchhhh----hhhcchhheeccch---hhc-CchhHHhhhcccccccc-------hhccCCCchh
Confidence 578899999999999887777 99999999999997 655 88889999999999999 9999999999
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+..+..+..+..++|..+..++... .+.+++..+.....++.++..+.. .|++++|.+. ...+..+.+|+
T Consensus 133 i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~ 202 (1081)
T KOG0618|consen 133 IEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLE 202 (1081)
T ss_pred HHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchh
Confidence 9999999999999884344444321 555566655544455555554444 4666666443 12233333333
Q ss_pred ccc--------------------eEEeecccCCCcCccccccccccCCceEec--CCCCCChhhhhHhhhcccCCcceEe
Q 011151 229 RVT--------------------KFVVGGGYDRARSLGSLKKLNLLRECSIRG--LGGVSDAGEARRAELEKKKNLVELG 286 (492)
Q Consensus 229 ~L~--------------------l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~ 286 (492)
.+. ...+.... ....+.-.+|+.+.++. ...++ ..+..+.+|+.++
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~-----~~~~p~p~nl~~~dis~n~l~~lp-------~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTT-----LDVHPVPLNLQYLDISHNNLSNLP-------EWIGACANLEALN 270 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCccee-----eccccccccceeeecchhhhhcch-------HHHHhcccceEec
Confidence 333 33322221 00001111233333322 12222 4566777777777
Q ss_pred cccccCCCCchh----------hHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh-----------------
Q 011151 287 LHFDRLRDGDEE----------QARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM----------------- 339 (492)
Q Consensus 287 l~~~~l~~~~~~----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~----------------- 339 (492)
..+|.+...... .........++........|++|+|..|.+.. +|+..+.
T Consensus 271 ~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~--lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS--LPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc--cchHHHhhhhHHHHHHhhhhcccc
Confidence 777776443221 11112223344445556778888888777666 5322211
Q ss_pred --------ccccccEEEEecccCCCcC-CCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 340 --------SLTNLRALLLKNCRNCEHL-PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 340 --------~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
.++.|+.|++.+|.+.++. |.+-++++|+.|+|++|+ +..++..... .++.|++|++++
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~-----------kle~LeeL~LSG 416 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLR-----------KLEELEELNLSG 416 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHh-----------chHHhHHHhccc
Confidence 2344666666666666553 446677778888887776 4444443332 666777777776
Q ss_pred ccccccccc-----------------CccccccccCCCCcceEeecCCCCccc--CCcccCCCCCCCeEEEeCCCc
Q 011151 411 MEELEEWDF-----------------GTAIKGEIIIMPRLSFLEISGCCKLKA--LPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 411 ~~~l~~~~~-----------------~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+. |+.+.. -..+| .+..+|.|+.+|++. +.++. +|..+. .++|++||++||..
T Consensus 417 Nk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 417 NK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence 43 333320 01134 566788899999976 55553 343332 38999999999985
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=156.29 Aligned_cols=255 Identities=20% Similarity=0.187 Sum_probs=129.0
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
.-..|+++.+. ++. +|..+. ++|+.|+++ +|.+..+|.. +++|++|++++|. ++.+|.. .
T Consensus 202 ~~~~LdLs~~~---Lts-LP~~l~--~~L~~L~L~-------~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p 261 (788)
T PRK15387 202 GNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---P 261 (788)
T ss_pred CCcEEEcCCCC---CCc-CCcchh--cCCCEEEcc-------CCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---c
Confidence 34556666665 444 444333 356667776 6666666642 3567777777766 5566542 3
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCC
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRE 256 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~ 256 (492)
++|+.|++++|. +..+|.. ..+|+.|++++|.+ ..+|.. .++|+.|+++.|.... ++..+. . |+.
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~L-t~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~---~---L~~ 326 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLAS-LPALPS---E---LCK 326 (788)
T ss_pred cccceeeccCCc-hhhhhhc---hhhcCEEECcCCcc-cccccc---ccccceeECCCCcccc-CCCCcc---c---ccc
Confidence 466667777666 4555542 24566666766654 334432 2456666666554432 111111 1 112
Q ss_pred ceEe--cCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 257 CSIR--GLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 257 l~~~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
+.+. .+..++. ...+|+.|++++|.|+..+ . .+++|+.|++++|.+.. +
T Consensus 327 L~Ls~N~L~~LP~----------lp~~Lq~LdLS~N~Ls~LP-------------~---lp~~L~~L~Ls~N~L~~--L- 377 (788)
T PRK15387 327 LWAYNNQLTSLPT----------LPSGLQELSVSDNQLASLP-------------T---LPSELYKLWAYNNRLTS--L- 377 (788)
T ss_pred cccccCccccccc----------cccccceEecCCCccCCCC-------------C---CCcccceehhhcccccc--C-
Confidence 2111 1111111 0135666777666653221 1 12456666666666555 5
Q ss_pred chhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEEL 414 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 414 (492)
|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|. +..++. ...+|+.|+++++. +
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~Nq-L 434 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRNQ-L 434 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhccCc-c
Confidence 432 2456666776665443 3332 2456666666665 333321 12345555555532 2
Q ss_pred cccccCccccccccCCCCcceEeecCCCCc
Q 011151 415 EEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
+ .+|..+..+++|+.|++++|+.-
T Consensus 435 t------~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 435 T------RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred c------ccChHHhhccCCCeEECCCCCCC
Confidence 2 24445556666666666665443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=151.85 Aligned_cols=253 Identities=21% Similarity=0.204 Sum_probs=179.8
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
+-..++++.+.+..+|..+. ++|+.|.+.+|. ++. +|. ..++|++|+++ +|.+..+|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~---Lt~-LP~---lp~~Lk~LdLs-------~N~LtsLP~l- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPVL- 260 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh------cCCCEEEccCCc---CCC-CCC---CCCCCcEEEec-------CCccCcccCc-
Confidence 44578888898888887665 479999999988 655 554 25789999999 8899888853
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
..+|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.+. .+|... ..|+.
T Consensus 261 --p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~ 326 (788)
T PRK15387 261 --PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCK 326 (788)
T ss_pred --ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccc-cCCCCc---ccccc
Confidence 4688999999998 7777763 3578899999998 6777763 478999999999774 445422 35777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEec--CCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRG--LGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
|.+..+.... ++ .++ ..|+.|.+.. +..++. ..++|+.|++++|.++..
T Consensus 327 L~Ls~N~L~~-LP----~lp--~~Lq~LdLS~N~Ls~LP~----------lp~~L~~L~Ls~N~L~~L------------ 377 (788)
T PRK15387 327 LWAYNNQLTS-LP----TLP--SGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLTSL------------ 377 (788)
T ss_pred cccccCcccc-cc----ccc--cccceEecCCCccCCCCC----------CCcccceehhhccccccC------------
Confidence 7777765543 11 111 2455554433 222221 124788899999886422
Q ss_pred HhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccC
Q 011151 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLG 387 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 387 (492)
+. .+.+|+.|++++|.+.. + |.. .++|+.|++++|.+.. +|.+ ..+|+.|++++|. ++.++..+.
T Consensus 378 -P~---l~~~L~~LdLs~N~Lt~--L-P~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~Nq-Lt~LP~sl~- 442 (788)
T PRK15387 378 -PA---LPSGLKELIVSGNRLTS--L-PVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQ-LTRLPESLI- 442 (788)
T ss_pred -cc---cccccceEEecCCcccC--C-CCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCc-ccccChHHh-
Confidence 21 13579999999999887 7 542 4689999999997654 5543 3578999999988 666665432
Q ss_pred CcCCCCCCcccccccccceeccCcc
Q 011151 388 VESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 388 ~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
.+++|+.|++++++
T Consensus 443 -----------~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 -----------HLSSETTVNLEGNP 456 (788)
T ss_pred -----------hccCCCeEECCCCC
Confidence 68899999998865
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-15 Score=154.53 Aligned_cols=139 Identities=20% Similarity=0.325 Sum_probs=94.8
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.+...+.+.+.++..+|..+. +.|+.|++++|. +.. +|..+. ++|+.|+++ +|.+..+|..
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip------~~L~~L~Ls~N~---Lts-LP~~l~--~nL~~L~Ls-------~N~LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP------EQITTLILDNNE---LKS-LPENLQ--GNIKTLYAN-------SNQLTSIPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc------cCCcEEEecCCC---CCc-CChhhc--cCCCEEECC-------CCccccCChh
Confidence 456677787777777776554 568888888887 555 444332 478888888 7778778765
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+. .+|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+. .+|..+. ++|+
T Consensus 239 l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~ 307 (754)
T PRK15370 239 LP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGIT 307 (754)
T ss_pred hh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccc-cCcccch--hhHH
Confidence 53 468888888888 777877654 478888888877 556776553 47888888888653 4554432 3566
Q ss_pred ccceEEeec
Q 011151 229 RVTKFVVGG 237 (492)
Q Consensus 229 ~L~l~~~~~ 237 (492)
.|+++.+..
T Consensus 308 ~L~Ls~N~L 316 (754)
T PRK15370 308 HLNVQSNSL 316 (754)
T ss_pred HHHhcCCcc
Confidence 666665543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-16 Score=140.94 Aligned_cols=270 Identities=21% Similarity=0.200 Sum_probs=176.8
Q ss_pred ccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 68 EKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
++....+.+-.|.|..+|...+ +.+++||.|++++|. ++.+-|++|+.++.|-.|-+.+ ++.+.++|.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF---~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg------~NkI~~l~k 133 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAF---KTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYG------NNKITDLPK 133 (498)
T ss_pred CCcceEEEeccCCcccCChhhc---cchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhc------CCchhhhhh
Confidence 3677778888888888776433 578888888888887 7777788888888877777763 588888885
Q ss_pred h-hhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCccccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
. |.++..|+.|.+.-|. +. .....+..+++|..|.+.+|. ++.++. .+..+..++++++..+.+. ..+++
T Consensus 134 ~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL 206 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFI-----CDCNL 206 (498)
T ss_pred hHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccc-----ccccc
Confidence 4 7788888888888777 44 334457788888888888887 666665 5677888888887766431 11222
Q ss_pred cccccc-----------------ceEEeecccCCCcCccccccccccCC-ceEecCCCCCChhhhhHhhhcccCCcceEe
Q 011151 225 INLRRV-----------------TKFVVGGGYDRARSLGSLKKLNLLRE-CSIRGLGGVSDAGEARRAELEKKKNLVELG 286 (492)
Q Consensus 225 ~~L~~L-----------------~l~~~~~~~~~~~~~~~l~~L~~L~~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 286 (492)
+.+... .+........... .-...+..+.. +.... . + +.......+.++++|++++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~--kf~c~~esl~s~~~~~d--~-~-d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR--KFLCSLESLPSRLSSED--F-P-DSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchh--hhhhhHHhHHHhhcccc--C-c-CCcChHHHHhhcccceEec
Confidence 222211 1110000000000 00000111111 01000 0 0 0111224588999999999
Q ss_pred cccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCC
Q 011151 287 LHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLP 365 (492)
Q Consensus 287 l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~ 365 (492)
+++|.+++ .-..++....+++.|.|.+|.+.. +....+..+..|+.|+|.+|+++...|. +..+.
T Consensus 281 lsnN~i~~------------i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 281 LSNNKITR------------IEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cCCCccch------------hhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 99999643 334567777889999999998877 6556677899999999999988877666 77788
Q ss_pred ccceeeccccc
Q 011151 366 SLESLYIEGMQ 376 (492)
Q Consensus 366 ~L~~L~l~~~~ 376 (492)
.|.+|++-.|+
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 88888886654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-16 Score=128.54 Aligned_cols=129 Identities=26% Similarity=0.365 Sum_probs=63.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++++.|.+++|. +.. +|..++.+.+|++|+++ +++++++|..++.++.|+.|++.-|. +..+|.++
T Consensus 31 ~~s~ITrLtLSHNK---l~~-vppnia~l~nlevln~~-------nnqie~lp~~issl~klr~lnvgmnr-l~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK---LTV-VPPNIAELKNLEVLNLS-------NNQIEELPTSISSLPKLRILNVGMNR-LNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCc---eee-cCCcHHHhhhhhhhhcc-------cchhhhcChhhhhchhhhheecchhh-hhcCcccc
Confidence 44455555555554 443 22224455555555555 55555555555555555555555554 44455555
Q ss_pred hcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 174 CELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
+.++.|++||+.+|...+ .+|..+..++.|+.|.+++|.+ +.+|.+++++++|+.|.+..+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccC
Confidence 555555555555444222 3444444445555555555543 444555555555555544443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-16 Score=139.64 Aligned_cols=290 Identities=20% Similarity=0.131 Sum_probs=195.8
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
.++-.+.++.++|..+. +....+.+..|. ++.+.+.+|+.+++||.|||+ .|.++.+ |..|.+
T Consensus 50 ~VdCr~~GL~eVP~~LP------~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS-------~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP------PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLS-------KNNISFIAPDAFKG 113 (498)
T ss_pred eEEccCCCcccCcccCC------CcceEEEeccCC---cccCChhhccchhhhceeccc-------ccchhhcChHhhhh
Confidence 45556667888888776 778899999998 888888999999999999999 9999998 566999
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccc-cccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRR 229 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~ 229 (492)
+..|..|-+.+++.++++|+. |.++..|+.|.+.-|+..-.....+..+++|..|.+-+|.+ +.++. .+..+..+++
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKT 192 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccch
Confidence 999999998884449999985 88999999999999995556667789999999999999866 44444 6778888888
Q ss_pred cceEEeecccCCCcCccccccccccCC-c--eEecCCCCCChhhh-------hH-hhhcccCCcce-EecccccCCCCch
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRE-C--SIRGLGGVSDAGEA-------RR-AELEKKKNLVE-LGLHFDRLRDGDE 297 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~-l--~~~~~~~~~~~~~~-------~~-~~l~~~~~L~~-L~l~~~~l~~~~~ 297 (492)
+.+..+.... ..+++.+..... . ...+...+...... .. ........+.+ +.-..+. +
T Consensus 193 lhlA~np~ic-----dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--d--- 262 (498)
T KOG4237|consen 193 LHLAQNPFIC-----DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--D--- 262 (498)
T ss_pred HhhhcCcccc-----ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc--C---
Confidence 8877665321 112222211000 0 00111000000000 00 00001011100 0000111 0
Q ss_pred hhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 298 EQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
...-...+..+++|++|++++|.++. +-+.||....+++.|.|.+|++...-.. +.++..|+.|+|++|+
T Consensus 263 -------~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 263 -------SICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred -------CcChHHHHhhcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 00011226778999999999999988 7688999999999999999976543333 7789999999999998
Q ss_pred cceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 377 SVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
++.+....+. .+.+|.+|.+..
T Consensus 334 -it~~~~~aF~-----------~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 334 -ITTVAPGAFQ-----------TLFSLSTLNLLS 355 (498)
T ss_pred -eEEEeccccc-----------ccceeeeeehcc
Confidence 6665554444 445666666654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-16 Score=126.59 Aligned_cols=155 Identities=26% Similarity=0.328 Sum_probs=140.9
Q ss_pred ccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 68 EKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
...++++.+++|.+..+|..+. ++.+|++|.+++|. ++. +|..+..++.||.|+++ -+.+..+|.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia----~l~nlevln~~nnq---ie~-lp~~issl~klr~lnvg-------mnrl~~lpr 96 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIA----ELKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVG-------MNRLNILPR 96 (264)
T ss_pred hhhhhhhhcccCceeecCCcHH----Hhhhhhhhhcccch---hhh-cChhhhhchhhhheecc-------hhhhhcCcc
Confidence 3689999999999999998888 99999999999998 888 77779999999999999 889999999
Q ss_pred hhhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.|+.++.|++|++.+|.+-+ .+|..+..+..|+.|.+++|. .+.+|..++++++|+.|.+.+|.+ -.+|.+++.+.+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHH
Confidence 99999999999999998333 688889999999999999999 889999999999999999999966 678999999999
Q ss_pred ccccceEEeeccc
Q 011151 227 LRRVTKFVVGGGY 239 (492)
Q Consensus 227 L~~L~l~~~~~~~ 239 (492)
|++|.+.++....
T Consensus 175 lrelhiqgnrl~v 187 (264)
T KOG0617|consen 175 LRELHIQGNRLTV 187 (264)
T ss_pred HHHHhcccceeee
Confidence 9999998887654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-14 Score=145.09 Aligned_cols=116 Identities=20% Similarity=0.303 Sum_probs=64.1
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
+...|.+.++. +.. +|..+ .+.|+.|+++ +|.+..+|..+. .+|++|++++|. +..+|..+.
T Consensus 179 ~~~~L~L~~~~---Lts-LP~~I--p~~L~~L~Ls-------~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~-- 240 (754)
T PRK15370 179 NKTELRLKILG---LTT-IPACI--PEQITTLILD-------NNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP-- 240 (754)
T ss_pred CceEEEeCCCC---cCc-CCccc--ccCCcEEEec-------CCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--
Confidence 34566666655 333 33322 1346666666 666666665443 366666666666 556665443
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEee
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVG 236 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 236 (492)
.+|+.|++++|. +..+|..+. .+|+.|++++|.+. .+|..+. ++|+.|+++.|.
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc
Confidence 356666666666 445555442 35666666666553 4454443 355555555443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-15 Score=140.59 Aligned_cols=135 Identities=18% Similarity=0.099 Sum_probs=76.9
Q ss_pred CCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccc-------cCchhhccCcCCEEEccCCCC
Q 011151 94 GLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-------IPTNIEKLLHLKYLSLCGQRE 165 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-------l~~~~~~l~~L~~L~L~~~~~ 165 (492)
.++.|+.+.+.++...... ..++..+...+.|+.|+++ ++.+.. ++..+..+++|++|++++|.+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-------~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-------LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-------ccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 5566788888777621100 1144445666777888777 444431 234456677888888887774
Q ss_pred ccccchhhhcCCC---CCeeecCcccccc----cccccccCC-CCCcEEecCCCccccc----ccccccccccccccceE
Q 011151 166 IEKLPETLCELYN---LERLNITSCNHLR----ELPQGIGKL-RKLMYLDNDDTWFLRY----LPVGIGELINLRRVTKF 233 (492)
Q Consensus 166 ~~~lp~~~~~l~~---L~~L~l~~~~~~~----~lp~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~ 233 (492)
.+..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.+... ++..+..+..|++|++.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 3344444444444 8888888777432 222334455 7778888887766422 22233444555555555
Q ss_pred Ee
Q 011151 234 VV 235 (492)
Q Consensus 234 ~~ 235 (492)
.+
T Consensus 174 ~n 175 (319)
T cd00116 174 NN 175 (319)
T ss_pred CC
Confidence 44
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-15 Score=142.04 Aligned_cols=273 Identities=20% Similarity=0.162 Sum_probs=140.4
Q ss_pred cchhhccCCeeeEEecchhhhhhccccc-----cccCchhhccCcCCEEEccCCCCcc-------ccchhhhcCCCCCee
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFI-----KKIPTNIEKLLHLKYLSLCGQREIE-------KLPETLCELYNLERL 182 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~-----~~l~~~~~~l~~L~~L~L~~~~~~~-------~lp~~~~~l~~L~~L 182 (492)
....+..+..|++|+++ ++.+ ..++..+...++|++|+++++. +. .++..+..+++|+.|
T Consensus 15 ~~~~~~~l~~L~~l~l~-------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 15 ATELLPKLLCLQVLRLE-------GNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred hHHHHHHHhhccEEeec-------CCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEE
Confidence 34445667778888888 6655 3355566677778888888876 33 233456677888888
Q ss_pred ecCcccccccccccccCCCC---CcEEecCCCccccc----cccccccc-ccccccceEEeecccCCCcCcccccccccc
Q 011151 183 NITSCNHLRELPQGIGKLRK---LMYLDNDDTWFLRY----LPVGIGEL-INLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 183 ~l~~~~~~~~lp~~~~~l~~---L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++++|.+....+..+..+.+ |++|++++|.+... +...+..+ ++|+.|++..+....
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--------------- 151 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG--------------- 151 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc---------------
Confidence 88888754444444444443 88888888765421 12223344 555666555544331
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc--
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV-- 332 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 332 (492)
.........+..+++|++|++++|.+++. ....+...+...++|++|++++|.+....
T Consensus 152 ------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 152 ------------ASCEALAKALRANRDLKELNLANNGIGDA--------GIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred ------------hHHHHHHHHHHhCCCcCEEECcCCCCchH--------HHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 11111223344555666666666654321 11223333444456666666666544310
Q ss_pred -cCchhhhccccccEEEEecccCCCc-CCC-----CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccc
Q 011151 333 -VPRNWVMSLTNLRALLLKNCRNCEH-LPP-----LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKH 405 (492)
Q Consensus 333 -l~~~~~~~l~~L~~L~L~~~~~~~~-~~~-----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 405 (492)
+ ...+..+++|++|++++|...+. +.. ....+.|++|++++|.........+... ...+++|+.
T Consensus 212 ~l-~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~--------~~~~~~L~~ 282 (319)
T cd00116 212 AL-AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV--------LAEKESLLE 282 (319)
T ss_pred HH-HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH--------HhcCCCccE
Confidence 1 22333556666666666654431 110 0123566666666665211001111111 114456666
Q ss_pred eeccCcccccccccCccccccccCC-CCcceEeecCC
Q 011151 406 LKFYDMEELEEWDFGTAIKGEIIIM-PRLSFLEISGC 441 (492)
Q Consensus 406 L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c 441 (492)
++++++. +.+... ..+...+..+ +.|++|++.++
T Consensus 283 l~l~~N~-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 283 LDLRGNK-FGEEGA-QLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred EECCCCC-CcHHHH-HHHHHHHhhcCCchhhcccCCC
Confidence 6666654 332210 1111223344 67777777664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-13 Score=141.22 Aligned_cols=326 Identities=25% Similarity=0.307 Sum_probs=212.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccc--ccccCch-hhccCcCCEEEccCCCCccccc
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF--IKKIPTN-IEKLLHLKYLSLCGQREIEKLP 170 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp 170 (492)
+....|...+.++. +.. ++. -..++.|+.|-+. ++. +..++.. |..++.|++|+|++|.....+|
T Consensus 521 ~~~~~rr~s~~~~~---~~~-~~~-~~~~~~L~tLll~-------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNK---IEH-IAG-SSENPKLRTLLLQ-------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccc---hhh-ccC-CCCCCccceEEEe-------ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 55778888888887 333 232 2345579999888 554 5666544 7789999999999998788999
Q ss_pred hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 171 ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 171 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
..++.+-+|++|+++++. +..+|.+++++.+|.+|++..+.....+|.....+++|+.|.+....... ....+.++..
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~ 666 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELEN 666 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-chhhHHhhhc
Confidence 999999999999999999 88999999999999999999987766777777779999999988765221 1445666777
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
|+.|+.+.+..... .....+..++.|.+....-.. ........+..+..+.+|+.|.+.++.+.+
T Consensus 667 Le~L~~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~---------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 667 LEHLENLSITISSV------LLLEDLLGMTRLRSLLQSLSI---------EGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ccchhhheeecchh------HhHhhhhhhHHHHHHhHhhhh---------cccccceeecccccccCcceEEEEcCCCch
Confidence 77777777754332 011223333343322221110 000123345567778899999999998865
Q ss_pred cccCchhh-----hc-cccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCccccccccc
Q 011151 331 NVVPRNWV-----MS-LTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLK 404 (492)
Q Consensus 331 ~~l~~~~~-----~~-l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 404 (492)
....+. .. ++++..+.+.+|....++...-..|+|+.|.+..|..++++....-.... ....+..++++.
T Consensus 732 --~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 732 --IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLE 807 (889)
T ss_pred --hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccc
Confidence 211221 12 56777777777777776665556789999999999877655432211110 000122445555
Q ss_pred ce-eccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCC
Q 011151 405 HL-KFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 405 ~L-~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
.+ .+.+.+.+..+..... .++.|+.+.+..|++++.+| .+.++.+.+|
T Consensus 808 ~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred cceeeecCCCCceeEeccc------CccchhheehhcCcccccCc-------cccccceecc
Confidence 55 3444444444433221 45557788887777766554 4445566665
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-12 Score=114.94 Aligned_cols=293 Identities=18% Similarity=0.148 Sum_probs=159.0
Q ss_pred cCCEEEccCCCCcc--ccchhhhcCCCCCeeecCccccccc--ccccccCCCCCcEEecCCCccccccc-c-cccccccc
Q 011151 154 HLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRE--LPQGIGKLRKLMYLDNDDTWFLRYLP-V-GIGELINL 227 (492)
Q Consensus 154 ~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~-~-~l~~l~~L 227 (492)
.|+.|.++++..++ .+-....+++++++|.+.+|..++. +-..-..|++|++|++..|...+... . ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555554332 1222234455555555555543221 11111245555555555543221111 1 12244555
Q ss_pred cccceEEeecccCCCcCc-cccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEeccccc-CCCCchhhHhhhhH
Q 011151 228 RRVTKFVVGGGYDRARSL-GSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR-LRDGDEEQARRRES 305 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~ 305 (492)
++++++++.... ...+ ...+.+..++.+...+|...+. .++...-..+..+.++++..+. + ++
T Consensus 219 ~~lNlSwc~qi~--~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~l-----------TD 283 (483)
T KOG4341|consen 219 KYLNLSWCPQIS--GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQL-----------TD 283 (483)
T ss_pred HHhhhccCchhh--cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccc-----------cc
Confidence 555555554432 1111 1123333344443344443332 1222223445556666655543 2 22
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC---CCCCCccceeeccccccceeec
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP---LGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~---l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
..+...-..+..|+.++.+++....+..-.....++++|+.|-+.+|....+... -.+.+.|+.+++..|..+.+.
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~- 362 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG- 362 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-
Confidence 3344444556788888888877655432122334789999999999876554332 346788999999888644332
Q ss_pred ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCccc-CCcccCCCCCCCeEE
Q 011151 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA-LPDLLLQKTTLQKLL 461 (492)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~ 461 (492)
.+... ...+|.|+.|.+++|..+++..+.. +...-.++..|+.+.+++|+.+++ .-..+..+++|+.++
T Consensus 363 -tL~sl--------s~~C~~lr~lslshce~itD~gi~~-l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 363 -TLASL--------SRNCPRLRVLSLSHCELITDEGIRH-LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred -hHhhh--------ccCCchhccCChhhhhhhhhhhhhh-hhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 12111 2278999999999998777652100 001223567899999999999875 335677889999999
Q ss_pred EeCCCchhhhh
Q 011151 462 IGRCPILEERC 472 (492)
Q Consensus 462 l~~c~~l~~~~ 472 (492)
+.+|..+.+.-
T Consensus 433 l~~~q~vtk~~ 443 (483)
T KOG4341|consen 433 LIDCQDVTKEA 443 (483)
T ss_pred eechhhhhhhh
Confidence 99998766543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-11 Score=117.60 Aligned_cols=215 Identities=25% Similarity=0.311 Sum_probs=157.0
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhc
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEK 151 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~ 151 (492)
-++.+++..+.++|..-.. ..+..-...+++.|. +.. +|..+..+-.|+.+.|+ .|.+..+|..+++
T Consensus 53 g~l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR---~~e-lp~~~~~f~~Le~liLy-------~n~~r~ip~~i~~ 119 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNR---FSE-LPEEACAFVSLESLILY-------HNCIRTIPEAICN 119 (722)
T ss_pred cccccccchhhcCCCcccc--ccccchhhhhccccc---ccc-CchHHHHHHHHHHHHHH-------hccceecchhhhh
Confidence 3566677777665543331 256667778888887 666 77778888888989998 8889999999999
Q ss_pred cCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVT 231 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 231 (492)
+..|++|+|+.|+ +..+|..+..|+ |++|-+++|+ ++.+|..++.++.|..|+.+.|.+ ..+|..++.+.+|+.|.
T Consensus 120 L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 120 LEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHH
Confidence 9999999999999 888998888775 8999999998 888999999888999999999966 66778888888888887
Q ss_pred eEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhh
Q 011151 232 KFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEA 311 (492)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 311 (492)
+..+.... .+.++..| .|..||+++|++ ..+|..
T Consensus 196 vrRn~l~~----lp~El~~L-----------------------------pLi~lDfScNki-------------s~iPv~ 229 (722)
T KOG0532|consen 196 VRRNHLED----LPEELCSL-----------------------------PLIRLDFSCNKI-------------SYLPVD 229 (722)
T ss_pred Hhhhhhhh----CCHHHhCC-----------------------------ceeeeecccCce-------------eecchh
Confidence 77665543 22332222 456677777763 344556
Q ss_pred cCCCCCccEEEEeecCCCccccCchhhh---ccccccEEEEecc
Q 011151 312 LGPPPNLKELVIDEYRGRRNVVPRNWVM---SLTNLRALLLKNC 352 (492)
Q Consensus 312 l~~~~~L~~L~l~~~~~~~~~l~~~~~~---~l~~L~~L~L~~~ 352 (492)
+..+..|++|.|.+|.... - |..++ ...=.++|+..-|
T Consensus 230 fr~m~~Lq~l~LenNPLqS--P-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQS--P-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCC--C-hHHHHhccceeeeeeecchhc
Confidence 6677777777777777766 2 44443 3333566666666
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-10 Score=93.84 Aligned_cols=127 Identities=26% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCCCceEEEeccCCccccccccchhhc-cCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFD-KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~ 172 (492)
++..++.|++.+|.+..++. ++ .+.+|+.|+++ +|.+..+. .+..+++|+.|++++|. ++.+...
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-------~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-------NNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------S-------TT-TT--EEE-T-------TS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECC-------CCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 55667888888877333332 43 46678888888 77777774 46777888888888888 7777554
Q ss_pred h-hcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCcccccc---cccccccccccccceEEe
Q 011151 173 L-CELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYL---PVGIGELINLRRVTKFVV 235 (492)
Q Consensus 173 ~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 235 (492)
+ ..+++|++|++++|. +..+- ..++.+++|++|++.+|.+...- ...+..+|+|+.|+....
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 4 357888888888887 43322 23567788888888888764331 123556777777765443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.2e-10 Score=93.29 Aligned_cols=124 Identities=26% Similarity=0.278 Sum_probs=53.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.+.+.|++.++.+..+.. +. ..+.+|+.|++++|....+.+ +..++.|+.|+++ +|.+..+.+.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~---~~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~-------~N~I~~i~~~ 82 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LG---ATLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLS-------NNRISSISEG 82 (175)
T ss_dssp -----------------S------TT-TT--EEE-TTS--S--TT---------TT--EEE---------SS---S-CHH
T ss_pred cccccccccccccccccc-hh---hhhcCCCEEECCCCCCccccC-----ccChhhhhhcccC-------CCCCCccccc
Confidence 467899999999987432 22 157899999999999444443 7779999999999 9999999765
Q ss_pred h-hccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecCC
Q 011151 149 I-EKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDNDD 210 (492)
Q Consensus 149 ~-~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~ 210 (492)
+ ..+++|+.|++++|. +.++. ..+..+++|++|++.+|+.. ..+. .+..+|+|+.||-..
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 5 468999999999999 66442 35778999999999999944 3332 356899999997643
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-10 Score=101.11 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=9.7
Q ss_pred hhhcccCCcceEecccccC
Q 011151 274 AELEKKKNLVELGLHFDRL 292 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l 292 (492)
..+..|++|+.|++..|.|
T Consensus 207 eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred HHHHhCCcceeeecccchh
Confidence 3445555555555555543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-10 Score=106.77 Aligned_cols=268 Identities=17% Similarity=0.126 Sum_probs=178.4
Q ss_pred CCCCeeecCcccccc--cccccccCCCCCcEEecCCCccccc-ccccc-cccccccccceEEeecccCCCcCcc-ccccc
Q 011151 177 YNLERLNITSCNHLR--ELPQGIGKLRKLMYLDNDDTWFLRY-LPVGI-GELINLRRVTKFVVGGGYDRARSLG-SLKKL 251 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L 251 (492)
..|+.|.++++.... .+-.....++++++|++.+|...+. .-..+ ..+++|+++.+..+.... ...+. ....+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHhh
Confidence 468999999987544 2333456899999999999853322 11122 367788888877654332 11222 23445
Q ss_pred cccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc
Q 011151 252 NLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN 331 (492)
Q Consensus 252 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 331 (492)
++|..+.+.++..+.. ........++..++.+...++. +.....+...-..++.+.++++..|...++
T Consensus 216 ~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~----------e~~le~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL----------ELELEALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred hhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc----------cccHHHHHHHhccChHhhccchhhhccccc
Confidence 6666777777665543 1222446677777777666654 112334444455677788888878766553
Q ss_pred ccCchhhhccccccEEEEecccCCCcCCC---CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceec
Q 011151 332 VVPRNWVMSLTNLRALLLKNCRNCEHLPP---LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKF 408 (492)
Q Consensus 332 ~l~~~~~~~l~~L~~L~L~~~~~~~~~~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 408 (492)
.--...-..+..|+.|..++|...++.+. ..+.++|+.|.+..|+.+++.+-...+. .++.|+.+++
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----------n~~~Le~l~~ 353 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----------NCPHLERLDL 353 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----------CChhhhhhcc
Confidence 10011122688999999999977666443 4578999999999999877766555544 7899999999
Q ss_pred cCcccccccccCccccccccCCCCcceEeecCCCCcccC-----CcccCCCCCCCeEEEeCCCchhhhh
Q 011151 409 YDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL-----PDLLLQKTTLQKLLIGRCPILEERC 472 (492)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~l~~l~~L~~L~l~~c~~l~~~~ 472 (492)
..|.-..+-.+ ...-.++|.|++|.++.|..+++. ...-.+...|+.+.+++||.+++..
T Consensus 354 e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 354 EECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred cccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 98875544322 223348999999999999988864 3444567899999999999988764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-10 Score=102.08 Aligned_cols=260 Identities=21% Similarity=0.217 Sum_probs=155.0
Q ss_pred chhhccCcCCEEEccCCCCcc-----ccchhhhcCCCCCeeecCccc---ccccccc-------cccCCCCCcEEecCCC
Q 011151 147 TNIEKLLHLKYLSLCGQREIE-----KLPETLCELYNLERLNITSCN---HLRELPQ-------GIGKLRKLMYLDNDDT 211 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~---~~~~lp~-------~~~~l~~L~~L~l~~~ 211 (492)
+.......++++++++|. ++ .+...+.+.+.|+..++++-. ....+|. .+..+++|++|++|+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 335567889999999998 54 234446677889999888643 1113333 3457889999999999
Q ss_pred ccccccccc----ccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEec
Q 011151 212 WFLRYLPVG----IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGL 287 (492)
Q Consensus 212 ~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 287 (492)
-+....+.. +..+..|++|.+.++.........++ +.|..|. ......+.++|+.+.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~----------------~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA----------------VNKKAASKPKLRVFIC 164 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH----------------HHhccCCCcceEEEEe
Confidence 764443322 45677888888877766531111111 1111111 1133556679999999
Q ss_pred ccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc--CchhhhccccccEEEEecccCCCcC----C-C
Q 011151 288 HFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV--PRNWVMSLTNLRALLLKNCRNCEHL----P-P 360 (492)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l--~~~~~~~l~~L~~L~L~~~~~~~~~----~-~ 360 (492)
..|++.+.. ....-..+...+.|+.+.++.|.+....+ -...+.++++|+.|+|.+|.+...- . .
T Consensus 165 ~rNrlen~g--------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 165 GRNRLENGG--------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred ecccccccc--------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 999876543 24445566777899999999988765321 0223558999999999998765432 1 2
Q ss_pred CCCCCccceeeccccccceeec-ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeec
Q 011151 361 LGKLPSLESLYIEGMQSVKRVG-NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEIS 439 (492)
Q Consensus 361 l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 439 (492)
+..+++|++|++++|- ++.-+ ..+... .....|+|+.|.+.+|.--.+-. ..+...+...|.|+.|.|+
T Consensus 237 L~s~~~L~El~l~dcl-l~~~Ga~a~~~a-------l~~~~p~L~vl~l~gNeIt~da~--~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCL-LENEGAIAFVDA-------LKESAPSLEVLELAGNEITRDAA--LALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hcccchheeecccccc-cccccHHHHHHH-------HhccCCCCceeccCcchhHHHHH--HHHHHHHhcchhhHHhcCC
Confidence 6677888888888886 32221 111110 01145666666666654111110 0111233346667777776
Q ss_pred CCCC
Q 011151 440 GCCK 443 (492)
Q Consensus 440 ~c~~ 443 (492)
+|..
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 6543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-09 Score=102.71 Aligned_cols=198 Identities=32% Similarity=0.341 Sum_probs=131.3
Q ss_pred EEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccC-cCCEEEccCCCCccccchhhhcCCC
Q 011151 100 SLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLL-HLKYLSLCGQREIEKLPETLCELYN 178 (492)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~ 178 (492)
.+....+. +.. -......++.+..|++. ++.+.+++.....+. +|+.|++++|. +..+|..+..+++
T Consensus 97 ~l~~~~~~---~~~-~~~~~~~~~~l~~L~l~-------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNR---LRS-NISELLELTNLTSLDLD-------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeeccccc---ccc-CchhhhcccceeEEecC-------CcccccCccccccchhhcccccccccc-hhhhhhhhhcccc
Confidence 46666665 322 12224555788999998 888999888777774 89999999998 8888777889999
Q ss_pred CCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCce
Q 011151 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECS 258 (492)
Q Consensus 179 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~ 258 (492)
|+.|++++|. +..+|...+.+++|+.|+++++.+ ..+|..+.....|+.+.+..+.... .+..
T Consensus 165 L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~----------- 227 (394)
T COG4886 165 LKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIE----LLSS----------- 227 (394)
T ss_pred ccccccCCch-hhhhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCccee----cchh-----------
Confidence 9999999998 778887666888999999999866 5666665556667887777663111 1122
Q ss_pred EecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhh
Q 011151 259 IRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWV 338 (492)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~ 338 (492)
+....++..+.+..|.+. ..+..+..+++++.|++++|.+.. + +. +
T Consensus 228 -----------------~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l~~L~~s~n~i~~--i-~~-~ 273 (394)
T COG4886 228 -----------------LSNLKNLSGLELSNNKLE-------------DLPESIGNLSNLETLDLSNNQISS--I-SS-L 273 (394)
T ss_pred -----------------hhhcccccccccCCceee-------------eccchhccccccceeccccccccc--c-cc-c
Confidence 222233333333334321 113344555667777777776666 4 32 6
Q ss_pred hccccccEEEEecccCCCcCCC
Q 011151 339 MSLTNLRALLLKNCRNCEHLPP 360 (492)
Q Consensus 339 ~~l~~L~~L~L~~~~~~~~~~~ 360 (492)
..+.+++.|+++++.....++.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCccCEEeccCccccccchh
Confidence 6777777777777766555444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-09 Score=95.59 Aligned_cols=223 Identities=17% Similarity=0.093 Sum_probs=118.5
Q ss_pred CCCCceEEEeccCCc-----cccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRSLLVESDDY-----SWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
.+..|..|.+++... +.....+|-.+..+++|+.+.++ .+....+......-+.|+.+..+++. +..
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s-------~~~~~~i~~~~~~kptl~t~~v~~s~-~~~ 251 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFS-------ALSTENIVDIELLKPTLQTICVHNTT-IQD 251 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeee-------ccchhheeceeecCchhheeeeeccc-ccc
Confidence 456677777666432 11112233233445555666655 44444433322333456666665554 333
Q ss_pred cchhhhcCCCCCeeecCccc-ccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccc
Q 011151 169 LPETLCELYNLERLNITSCN-HLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGS 247 (492)
Q Consensus 169 lp~~~~~l~~L~~L~l~~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 247 (492)
.|. +-....+.-+....-. ..+..-..+-.++.|+++|+++|.+ ..+..+..-++.++.|+++.+.... +
T Consensus 252 ~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~-----v-- 322 (490)
T KOG1259|consen 252 VPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT-----V-- 322 (490)
T ss_pred ccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceee-----e--
Confidence 322 1111111111111100 0111112233455666777777644 3334444445555555555443321 1
Q ss_pred cccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecC
Q 011151 248 LKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYR 327 (492)
Q Consensus 248 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 327 (492)
..+..+++|+.|++++|.++ .....-.++.+.+.|.+++|.
T Consensus 323 --------------------------~nLa~L~~L~~LDLS~N~Ls-------------~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 323 --------------------------QNLAELPQLQLLDLSGNLLA-------------ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred --------------------------hhhhhcccceEeecccchhH-------------hhhhhHhhhcCEeeeehhhhh
Confidence 12445567788888887742 222222346678888888888
Q ss_pred CCccccCchhhhccccccEEEEecccCCC--cCCCCCCCCccceeeccccc
Q 011151 328 GRRNVVPRNWVMSLTNLRALLLKNCRNCE--HLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 328 ~~~~~l~~~~~~~l~~L~~L~L~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 376 (492)
+.. .+.+..+.+|.+|++++|++.. ....++++|.|+++.+.+|+
T Consensus 364 iE~----LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 364 IET----LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Hhh----hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777 4667788888888888887643 34558888888888888887
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-10 Score=102.92 Aligned_cols=205 Identities=18% Similarity=0.066 Sum_probs=113.1
Q ss_pred cCCeeeEEecchhhhhhccccccccCc--hhhccCcCCEEEccCCCCcc---ccchhhhcCCCCCeeecCcccccccccc
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIKKIPT--NIEKLLHLKYLSLCGQREIE---KLPETLCELYNLERLNITSCNHLRELPQ 195 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~l~~--~~~~l~~L~~L~L~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 195 (492)
+++.|+...|. ++.+...+. ....|++++.|+|+.|- +. .+......+++|+.|+++.|.+..-...
T Consensus 119 n~kkL~~IsLd-------n~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLD-------NYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hHHhhhheeec-------CccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 46677777777 666666653 56677888888888776 33 2333356678888888887773221111
Q ss_pred c-ccCCCCCcEEecCCCcccccccc-cccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhH
Q 011151 196 G-IGKLRKLMYLDNDDTWFLRYLPV-GIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARR 273 (492)
Q Consensus 196 ~-~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~ 273 (492)
. ...++.|+.|.++.|.+...-.. .+..+++|..|.+..+.... . ...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~-~~~--------------------------- 240 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--I-KAT--------------------------- 240 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--e-ecc---------------------------
Confidence 1 12466777777777766543222 23456667776666553110 0 000
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchh-----hhccccccEEE
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNW-----VMSLTNLRALL 348 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~-----~~~l~~L~~L~ 348 (492)
...-+..|+.|++++|.+.+.+ .....+.++.|..|+++.+.+..-.+ |+. ...+++|++|+
T Consensus 241 -~~~i~~~L~~LdLs~N~li~~~-----------~~~~~~~l~~L~~Lnls~tgi~si~~-~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 241 -STKILQTLQELDLSNNNLIDFD-----------QGYKVGTLPGLNQLNLSSTGIASIAE-PDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred -hhhhhhHHhhccccCCcccccc-----------cccccccccchhhhhccccCcchhcC-CCccchhhhcccccceeee
Confidence 1112335666666666643221 12334556666666666666555323 222 23567777777
Q ss_pred EecccCCC--cCCCCCCCCccceeeccccc
Q 011151 349 LKNCRNCE--HLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 349 L~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 376 (492)
+..|++.+ .+..+..+++|+.|.+..+.
T Consensus 308 i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 308 ISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccCccccccccchhhccchhhhhhccccc
Confidence 77776532 33335556666666665544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-09 Score=100.91 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCCceEEEeccCCccccccccc--hhhccCCeeeEEecchhhhhhcccccccc---CchhhccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLP--QLFDKLTCLRALKLEVRQRWLCKNFIKKI---PTNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
++++|+...+..++ +.. .+ +....|++++.|||+ .+.+... ......+++|+.|+++.|.+.--
T Consensus 119 n~kkL~~IsLdn~~---V~~-~~~~~~~k~~~~v~~LdLS-------~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYR---VED-AGIEEYSKILPNVRDLDLS-------RNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hHHhhhheeecCcc---ccc-cchhhhhhhCCcceeecch-------hhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 55556666665554 222 11 234556666666666 4444331 12234556666666666652111
Q ss_pred cch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 169 LPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 169 lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
..+ .-..+.+|+.|.++.|.+.. .+-..+..+|+|+.|++.+|...........-+..|+.|+++.+...
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 111 11235556666666665322 12222335566666666665321111112233455566666555443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-09 Score=95.89 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=57.6
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
.|+.+++++|. ++. +.+..+-.|.+|+|+++ .|.+..+- ++..+++|+.|+|++|. +..+-.+-.++
T Consensus 285 ~LtelDLS~N~---I~~-iDESvKL~Pkir~L~lS-------~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 285 ELTELDLSGNL---ITQ-IDESVKLAPKLRRLILS-------QNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKL 351 (490)
T ss_pred hhhhccccccc---hhh-hhhhhhhccceeEEecc-------ccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhh
Confidence 34555555554 322 23333444455555555 44444442 24445555555555554 44443333344
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCccccc-ccccccccccccccceEEeec
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRY-LPVGIGELINLRRVTKFVVGG 237 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 237 (492)
.+.+.|.++.|. ++.+ .+++++.+|..||+++|++... ....+++++.|+++.+.+++.
T Consensus 352 GNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 455555555554 3333 2344455555555555544211 112345555555555554443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-10 Score=109.29 Aligned_cols=130 Identities=27% Similarity=0.342 Sum_probs=70.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++..|+.++++.|+ ++. +|..+..++ |++|-++ ++.++.+|..++.+..|..|+.+.|. +..+|+.+
T Consensus 119 ~L~~lt~l~ls~Nq---lS~-lp~~lC~lp-Lkvli~s-------NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQ---LSH-LPDGLCDLP-LKVLIVS-------NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred hhhHHHHhhhccch---hhc-CChhhhcCc-ceeEEEe-------cCccccCCcccccchhHHHhhhhhhh-hhhchHHh
Confidence 44444444444444 333 344344444 5555555 55555555555555555555555555 55555555
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeeccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
+.+.+|+.|+++.|+ +..+|..+. .-.|..||++.|++ ..+|..+.+|..|+.|-+.+|....
T Consensus 186 ~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCce-eecchhhhhhhhheeeeeccCCCCC
Confidence 555556666655555 455555554 33455566665544 4556666666666666666555443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-09 Score=94.26 Aligned_cols=167 Identities=22% Similarity=0.205 Sum_probs=108.3
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
..+..|.+|+.+.+.++.+ ++.+...+++-.+|+.|+++.+.+.+..-..-.+.+|+.|..|+|++|.
T Consensus 204 ~iLs~C~kLk~lSlEg~~L------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRL------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHHHhhhhcccccccc------------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 5577788888888888873 4556667778888888888888766521102234588888888888886
Q ss_pred CCCcCC-C-C-CCCCccceeeccccccc-eeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccC
Q 011151 354 NCEHLP-P-L-GKLPSLESLYIEGMQSV-KRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIII 429 (492)
Q Consensus 354 ~~~~~~-~-l-~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 429 (492)
..++.- . . .--++|..|+|++|... ..-..... ...+|+|..|++++|..++.-.+ ..+..
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL----------~~rcp~l~~LDLSD~v~l~~~~~-----~~~~k 336 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL----------VRRCPNLVHLDLSDSVMLKNDCF-----QEFFK 336 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH----------HHhCCceeeeccccccccCchHH-----HHHHh
Confidence 554321 1 1 11357888888877521 11000111 22678888888888877766443 34557
Q ss_pred CCCcceEeecCCCCcc-cCCcccCCCCCCCeEEEeCCCc
Q 011151 430 MPRLSFLEISGCCKLK-ALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|+.|++|.++.|-.+. .....+...|+|.+|++.||-.
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 8888888888886653 1113456678888888888764
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-08 Score=96.40 Aligned_cols=177 Identities=27% Similarity=0.317 Sum_probs=132.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCC-eeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLT-CLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~ 172 (492)
..+.++.|.+.++. +.. ++......+ +|+.|+++ ++.+..+|..+..+++|+.|++++|. +.++|..
T Consensus 114 ~~~~l~~L~l~~n~---i~~-i~~~~~~~~~nL~~L~l~-------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNN---ITD-IPPLIGLLKSNLKELDLS-------DNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred cccceeEEecCCcc---ccc-Cccccccchhhccccccc-------ccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 66789999999998 555 444355563 89999999 99999998888999999999999999 9999887
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
.+.++.|+.|++++|. +..+|..+.....|++|.++++.. ...+..+.++.++..+.+..+.... ....+..+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~----~~~~~~~l~ 255 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLED----LPESIGNLS 255 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeee----ccchhcccc
Confidence 7789999999999999 888888666777799999999853 4556667788888888766655432 133444444
Q ss_pred ccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCC
Q 011151 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294 (492)
Q Consensus 253 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 294 (492)
.++.+.+........ ..+....+++.++++++.+..
T Consensus 256 ~l~~L~~s~n~i~~i------~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 256 NLETLDLSNNQISSI------SSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccceecccccccccc------ccccccCccCEEeccCccccc
Confidence 455554443322111 126778899999999988543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=97.16 Aligned_cols=105 Identities=22% Similarity=0.363 Sum_probs=87.2
Q ss_pred eeeEEecchhhhhhcccccc-ccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCC
Q 011151 124 CLRALKLEVRQRWLCKNFIK-KIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRK 202 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 202 (492)
.++.|+|+ ++.+. .+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+...+|..++++++
T Consensus 419 ~v~~L~L~-------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLD-------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECC-------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47889998 66664 67888999999999999999966689988999999999999999977789999999999
Q ss_pred CcEEecCCCccccccccccccc-ccccccceEEe
Q 011151 203 LMYLDNDDTWFLRYLPVGIGEL-INLRRVTKFVV 235 (492)
Q Consensus 203 L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 235 (492)
|++|++++|.+.+.+|..+... .++..+++..+
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 9999999999888888877653 34455555544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-09 Score=92.51 Aligned_cols=118 Identities=20% Similarity=0.199 Sum_probs=69.3
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCC-CCCccEEEEeecCCCc--cccCchhhhccccccEEEEe
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGP-PPNLKELVIDEYRGRR--NVVPRNWVMSLTNLRALLLK 350 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~--~~l~~~~~~~l~~L~~L~L~ 350 (492)
..+.+|+.|..|+++|+.+.. ..+-..... -++|..|+++|+.-.- ..+ ......+++|..|||+
T Consensus 254 ll~~scs~L~~LNlsWc~l~~-----------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFT-----------EKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLS 321 (419)
T ss_pred HHHHhhhhHhhcCchHhhccc-----------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccc
Confidence 346677778888888777421 111111122 2567777877764221 112 2233478888888888
Q ss_pred cccCCCc-C-CCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccc
Q 011151 351 NCRNCEH-L-PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEEL 414 (492)
Q Consensus 351 ~~~~~~~-~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 414 (492)
+|..... . ..+..++.|++|.++.|..+ +++.+.. ....|+|.+|++.+|-.-
T Consensus 322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------LNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred cccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee---------eccCcceEEEEeccccCc
Confidence 8765554 1 22667788888888888743 2232322 227788888888876533
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=96.04 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred cCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceE
Q 011151 154 HLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKF 233 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 233 (492)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+...+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999667899999999999999999999777899999999999999999999988999999999999999999
Q ss_pred EeecccCCC
Q 011151 234 VVGGGYDRA 242 (492)
Q Consensus 234 ~~~~~~~~~ 242 (492)
.+.....++
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 887764333
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-07 Score=63.71 Aligned_cols=56 Identities=30% Similarity=0.605 Sum_probs=26.9
Q ss_pred cCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCC
Q 011151 154 HLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 211 (492)
+|++|++++|. +..+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555554 444443 34445555555555555 23322 33455555555555555
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.7e-07 Score=62.20 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=23.2
Q ss_pred cccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccc
Q 011151 139 KNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCN 188 (492)
Q Consensus 139 ~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 188 (492)
++.+..+|. .+.++++|++|++++|. +..+++ .+..+++|++|++++|+
T Consensus 10 ~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 10 NNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 444444442 34445555555555554 444432 34455555555555443
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.1e-08 Score=94.81 Aligned_cols=237 Identities=27% Similarity=0.263 Sum_probs=139.6
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+..++.+.+..+. +.. ....+..+++|..|++. ++.+..+...+..+++|++|++++|. ++.+. .+
T Consensus 70 ~l~~l~~l~l~~n~---i~~-~~~~l~~~~~l~~l~l~-------~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAK-ILNHLSKLKSLEALDLY-------DNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GL 136 (414)
T ss_pred HhHhHHhhccchhh---hhh-hhcccccccceeeeecc-------ccchhhcccchhhhhcchheeccccc-ccccc-ch
Confidence 45566666666665 333 22336777888888888 88888876557788889999998888 77774 46
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccc-ccccccccccccceEEeecccCCCcCcccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
..+..|+.|++.+|. +..+.. +..+++|+.+++++|.+...-+ . +..+.+++.+.+..+.... ...+.....+.
T Consensus 137 ~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~ 211 (414)
T KOG0531|consen 137 STLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLV 211 (414)
T ss_pred hhccchhhheeccCc-chhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHH
Confidence 777788888988888 555543 5668888888888887644333 1 4667778877777765543 22222222222
Q ss_pred cc--CCceEecCCCCCChhhhhHhhhcccC--CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCC
Q 011151 253 LL--RECSIRGLGGVSDAGEARRAELEKKK--NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRG 328 (492)
Q Consensus 253 ~L--~~l~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 328 (492)
.+ +.-.+..+.. +.... +|+.+.+.+|.+.. .+..+..+..+..+++..+..
T Consensus 212 ~~~l~~n~i~~~~~-----------l~~~~~~~L~~l~l~~n~i~~-------------~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 212 LLSLLDNKISKLEG-----------LNELVMLHLRELYLSGNRISR-------------SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred HhhcccccceeccC-----------cccchhHHHHHHhcccCcccc-------------ccccccccccccccchhhccc
Confidence 12 1111111111 11112 36777777776321 114455566777777776665
Q ss_pred CccccCchhhhccccccEEEEecccCCCc---C--CCCCCCCccceeeccccc
Q 011151 329 RRNVVPRNWVMSLTNLRALLLKNCRNCEH---L--PPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 329 ~~~~l~~~~~~~l~~L~~L~L~~~~~~~~---~--~~l~~l~~L~~L~l~~~~ 376 (492)
.. ...+...+.+..+....+..... . +..+..+.++..++..+.
T Consensus 268 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 268 SN----LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred cc----cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 55 23344455555555555543321 1 114445666666666554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-07 Score=91.62 Aligned_cols=108 Identities=28% Similarity=0.361 Sum_probs=79.0
Q ss_pred ccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccC
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 199 (492)
..+..++.+.++ .+.+..+-..+..+.+|++|++.+|. +..+...+..+++|++|++++|. +..+. .+..
T Consensus 69 ~~l~~l~~l~l~-------~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~ 138 (414)
T KOG0531|consen 69 ESLTSLKELNLR-------QNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLST 138 (414)
T ss_pred HHhHhHHhhccc-------hhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhh
Confidence 345566667777 77777755557888999999999998 77775547789999999999998 56554 3677
Q ss_pred CCCCcEEecCCCcccccccccccccccccccceEEeeccc
Q 011151 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
++.|+.|++++|.+... ..+..+..|+.+++.++....
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhhh
Confidence 78899999999866332 234446777777777776553
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-06 Score=87.47 Aligned_cols=135 Identities=21% Similarity=0.095 Sum_probs=78.9
Q ss_pred CcCCEEEccCCCCcc-ccchhhh-cCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 153 LHLKYLSLCGQREIE-KLPETLC-ELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~-~lp~~~~-~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
.+|++|+++|...+. ..|..++ .+|+|+.|.+++-.+.. .+-....++++|..||++++++... .++..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567777777755332 3444444 47788888887754322 3334455778888888888765322 56677777777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCCh--hhhhHhhhcccCCcceEeccccc
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDA--GEARRAELEKKKNLVELGLHFDR 291 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 291 (492)
|.+.+..... ...+..+-.|++|+.|+++........ ...+.+.-..+|+|+.||.+++.
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7766555443 344555556666666666554433322 12223344456677777776655
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=1e-05 Score=51.25 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=16.2
Q ss_pred cCCEEEccCCCCccccchhhhcCCCCCeeecCccc
Q 011151 154 HLKYLSLCGQREIEKLPETLCELYNLERLNITSCN 188 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 188 (492)
+|++|++++|. ++++|+.+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 44555555555 44454444555555555555554
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.5e-06 Score=71.97 Aligned_cols=154 Identities=20% Similarity=0.062 Sum_probs=87.9
Q ss_pred hhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC---chhhhccccccEEEEec
Q 011151 275 ELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP---RNWVMSLTNLRALLLKN 351 (492)
Q Consensus 275 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~---~~~~~~l~~L~~L~L~~ 351 (492)
....-|.|+.+.+..|++..++. ......+....+|+.+.+..|.+....+. -..+..+.+|+.|+|++
T Consensus 152 Kaa~kp~Le~vicgrNRlengs~--------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 152 KAADKPKLEVVICGRNRLENGSK--------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred hhccCCCceEEEeccchhccCcH--------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 35566789999998888655432 22223344456899999998886543220 01233788999999999
Q ss_pred ccCCCcCC----C-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccc-
Q 011151 352 CRNCEHLP----P-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKG- 425 (492)
Q Consensus 352 ~~~~~~~~----~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~- 425 (492)
|.++..-. . +...+.|++|.+..|-.-......++..- .-..+|+|..|...+...-........+|.
T Consensus 224 Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f------~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~ 297 (388)
T COG5238 224 NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF------NEKFVPNLMPLPGDYNERRGGIILDISLNEF 297 (388)
T ss_pred cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh------hhhcCCCccccccchhhhcCceeeeechhhh
Confidence 86654321 1 56677789999998862222222221100 011467777777666432111111111111
Q ss_pred cccCCCCcceEeecCCC
Q 011151 426 EIIIMPRLSFLEISGCC 442 (492)
Q Consensus 426 ~~~~~~~L~~L~l~~c~ 442 (492)
....+|-|..|.+.||.
T Consensus 298 e~~~~p~L~~le~ngNr 314 (388)
T COG5238 298 EQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhcccHHHHHHHHccCc
Confidence 23467888888888743
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.5e-05 Score=50.43 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=31.7
Q ss_pred CeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccch
Q 011151 123 TCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~ 171 (492)
++|++|+++ ++.+.++|..+.++++|++|++++|. +++++.
T Consensus 1 ~~L~~L~l~-------~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-------NNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET-------SSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc-------CCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 468888888 88888888778888899999998888 666653
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=71.37 Aligned_cols=206 Identities=13% Similarity=0.015 Sum_probs=97.2
Q ss_pred ccCcCCEEEccCCCCcc---ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccc-cccccccccc
Q 011151 151 KLLHLKYLSLCGQREIE---KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRY-LPVGIGELIN 226 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~ 226 (492)
.++.++.++|.+|. +. ++...+.+++.|++|+++.|.....+...-....+|++|-+.|..+... ....+..++.
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34566666666666 33 2333345666666666666653222111112234566666666544322 2223445555
Q ss_pred ccccceEEeeccc--CCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhh
Q 011151 227 LRRVTKFVVGGGY--DRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRE 304 (492)
Q Consensus 227 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 304 (492)
+++|.++.+.... ......... -+.++.++...|.... .........-+|++..+-+..+.+++
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~sv~v~e~PlK~---------- 213 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNSVFVCEGPLKT---------- 213 (418)
T ss_pred hhhhhhccchhhhhcccccccccc--chhhhhhhcCCcHHHH--HHHHHhHHhhcccchheeeecCcccc----------
Confidence 5665555442110 000000000 0011112222111000 00001122345666667676666532
Q ss_pred HHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-------CCCCCccceeecc
Q 011151 305 SERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-------LGKLPSLESLYIE 373 (492)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-------l~~l~~L~~L~l~ 373 (492)
.........+|.+.-|+|+.+++....- ...+..+++|+.|.++.+.+.+.+.. ++++++++.|+=+
T Consensus 214 -~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 214 -ESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred -hhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 2223344556666677777776655322 34456788888888888776655432 4567777776543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.2e-07 Score=90.01 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=102.1
Q ss_pred ccccCccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccc
Q 011151 63 INSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFI 142 (492)
Q Consensus 63 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 142 (492)
.+..| .++..++.++|.+.....++- -++.+++|++++|. +.. .. ++..++.|++|||+ .|.+
T Consensus 159 ns~~W-n~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk---~~~-v~-~Lr~l~~LkhLDls-------yN~L 221 (1096)
T KOG1859|consen 159 NSPVW-NKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNK---FTK-VD-NLRRLPKLKHLDLS-------YNCL 221 (1096)
T ss_pred cchhh-hhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhh---hhh-hH-HHHhcccccccccc-------cchh
Confidence 33445 688889999998876555554 78999999999998 555 33 48999999999999 8999
Q ss_pred cccCch-hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc--cccccccCCCCCcEEecCCCcc
Q 011151 143 KKIPTN-IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR--ELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 143 ~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
..+|.. ..++. |..|.+++|. ++++ ..+.++.+|+.||+++|-+.. .+ .-++.+..|+.|.+.||.+
T Consensus 222 ~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 222 RHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCcc
Confidence 888853 44554 9999999999 8877 468999999999999997433 22 1256778899999999865
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=68.75 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=48.0
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
..+..+++++.|+++.|.++. +| .-+++|++|.+++|..... + |..+ .++|++|++++|.
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~s-------------LP---~LP~sLtsL~Lsnc~nLts-L-P~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIES-------------LP---VLPNELTEITIENCNNLTT-L-PGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcc-------------cC---CCCCCCcEEEccCCCCccc-C-Cchh--hhhhhheEccCcc
Confidence 335567888889988887431 22 1234788888887665442 4 5443 3678888888885
Q ss_pred CCCcCCCCCCCCccceeeccc
Q 011151 354 NCEHLPPLGKLPSLESLYIEG 374 (492)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~l~~ 374 (492)
....+| +.|+.|++..
T Consensus 106 ~L~sLP-----~sLe~L~L~~ 121 (426)
T PRK15386 106 EISGLP-----ESVRSLEIKG 121 (426)
T ss_pred cccccc-----cccceEEeCC
Confidence 444443 2566666654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.8e-06 Score=85.77 Aligned_cols=85 Identities=24% Similarity=0.238 Sum_probs=36.9
Q ss_pred chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
.++.-++.|+.|+|++|. +...- .+..|++|++||+++|. +..+|.. ...|. |+.|++++|.+. .+ .++.++.
T Consensus 181 ~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH-hh-hhHHhhh
Confidence 333444455555555555 33331 34455555555555554 4444431 11222 555555544321 11 2344445
Q ss_pred cccccceEEeec
Q 011151 226 NLRRVTKFVVGG 237 (492)
Q Consensus 226 ~L~~L~l~~~~~ 237 (492)
+|+.|+++.|..
T Consensus 255 sL~~LDlsyNll 266 (1096)
T KOG1859|consen 255 SLYGLDLSYNLL 266 (1096)
T ss_pred hhhccchhHhhh
Confidence 555555544433
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.3e-06 Score=64.82 Aligned_cols=83 Identities=30% Similarity=0.370 Sum_probs=43.0
Q ss_pred ccCCeeeEEecchhhhhhccccccccCchhh-ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccccc
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIE-KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIG 198 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 198 (492)
.....|...+|+ +|.+..+|+.+. ..+.++.|++++|. +.++|..+..++.|+.|+++.|. +...|..+.
T Consensus 50 ~~~~el~~i~ls-------~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 50 SKGYELTKISLS-------DNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred hCCceEEEEecc-------cchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 334445555555 555555554433 23355555555555 55555555555555555555555 444454444
Q ss_pred CCCCCcEEecCCC
Q 011151 199 KLRKLMYLDNDDT 211 (492)
Q Consensus 199 ~l~~L~~L~l~~~ 211 (492)
.+.+|-.|+.-++
T Consensus 121 ~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 121 PLIKLDMLDSPEN 133 (177)
T ss_pred HHHhHHHhcCCCC
Confidence 4555555555444
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.8e-05 Score=68.49 Aligned_cols=92 Identities=22% Similarity=0.118 Sum_probs=55.3
Q ss_pred hcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh-----ccccccEEEEe
Q 011151 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM-----SLTNLRALLLK 350 (492)
Q Consensus 276 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~-----~l~~L~~L~L~ 350 (492)
+..+++|+.|++..|.|+-. ....+...+..++.|+.|.+..|-...... .+.+. ..++|..|...
T Consensus 210 l~y~~~LevLDlqDNtft~~--------gS~~La~al~~W~~lrEL~lnDClls~~G~-~~v~~~f~e~~~p~l~~L~~~ 280 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLE--------GSRYLADALCEWNLLRELRLNDCLLSNEGV-KSVLRRFNEKFVPNLMPLPGD 280 (388)
T ss_pred HHHhCcceeeeccccchhhh--------hHHHHHHHhcccchhhhccccchhhccccH-HHHHHHhhhhcCCCccccccc
Confidence 55677888888888875421 233444556667778888888776655332 22222 56777777777
Q ss_pred cccCCCc------CCC--CCCCCccceeeccccc
Q 011151 351 NCRNCEH------LPP--LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 351 ~~~~~~~------~~~--l~~l~~L~~L~l~~~~ 376 (492)
+|..... ++. -..+|-|..|.+.+|+
T Consensus 281 Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 281 YNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 7754332 122 2356666666666665
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.7e-05 Score=79.64 Aligned_cols=149 Identities=23% Similarity=0.251 Sum_probs=97.7
Q ss_pred cceEEEEEEeecCCC--cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC
Q 011151 69 KKILHLLLTLHRGAS--VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 146 (492)
.++++|++++...-. -+..+. .-+|.|++|.+.+-... .+..-....++++|+.||+| ++.+..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig---~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS-------~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG---TMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDIS-------GTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh---hhCcccceEEecCceec--chhHHHHhhccCccceeecC-------CCCccCc-
Confidence 577888887754332 112222 25899999999885521 11133445789999999999 8888888
Q ss_pred chhhccCcCCEEEccCCCCccc--cchhhhcCCCCCeeecCcccccccc--cc----cccCCCCCcEEecCCCccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEK--LPETLCELYNLERLNITSCNHLREL--PQ----GIGKLRKLMYLDNDDTWFLRYLP 218 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~l--p~----~~~~l~~L~~L~l~~~~~~~~~~ 218 (492)
..++++++|+.|.+++=. +.. --..+.++++|++||+|.......- .. --..||+|+.||.+++.+.+.+.
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 678899999999988876 432 2235778999999999987633211 11 11358899999999987755443
Q ss_pred cc-ccccccccccc
Q 011151 219 VG-IGELINLRRVT 231 (492)
Q Consensus 219 ~~-l~~l~~L~~L~ 231 (492)
.. +...++|+...
T Consensus 268 e~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 268 EELLNSHPNLQQIA 281 (699)
T ss_pred HHHHHhCccHhhhh
Confidence 33 23344444443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=3e-05 Score=69.21 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh-hccCcCCEEEccCCCCc-cccch
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREI-EKLPE 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~-~~l~~L~~L~L~~~~~~-~~lp~ 171 (492)
.+..++.+++.+|.+..-+. +...+.++|.|++|+++ .|.+..-..+. ..+.+|+.|-|.++.+- +..-+
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls-------~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLS-------CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeecc-------CCcCCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 57888888888887333333 44556788888888888 66654432333 35678888888887621 13334
Q ss_pred hhhcCCCCCeeecCccc
Q 011151 172 TLCELYNLERLNITSCN 188 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~ 188 (492)
.+..++.++.|.++.|.
T Consensus 141 ~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhcchhhhhhhhccch
Confidence 45667777888777774
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.2e-05 Score=63.20 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=46.3
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
.+..+++++|.+..+|..+. .+++.+++|.+.+|. +.. +|..+..++.||.|+++ .|.+...|..+
T Consensus 54 el~~i~ls~N~fk~fp~kft---~kf~t~t~lNl~~ne---isd-vPeE~Aam~aLr~lNl~-------~N~l~~~p~vi 119 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFT---IKFPTATTLNLANNE---ISD-VPEELAAMPALRSLNLR-------FNPLNAEPRVI 119 (177)
T ss_pred eEEEEecccchhhhCCHHHh---hccchhhhhhcchhh---hhh-chHHHhhhHHhhhcccc-------cCccccchHHH
Confidence 45555566666555554443 234455555555555 444 44445555555555555 55555555555
Q ss_pred hccCcCCEEEccCCCCccccch
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~ 171 (492)
..+.+|-+|+..++. ..++|.
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcH
Confidence 455555555555555 444443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=1.8e-05 Score=80.17 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCcceEeecCCCCcccCC-cccC-CCCCCCeEEEeCCCchhhhhhc
Q 011151 429 IMPRLSFLEISGCCKLKALP-DLLL-QKTTLQKLLIGRCPILEERCRK 474 (492)
Q Consensus 429 ~~~~L~~L~l~~c~~l~~l~-~~l~-~l~~L~~L~l~~c~~l~~~~~~ 474 (492)
.+..++.|.++.|...+.-- .... .+..++.+++.+|+.+......
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 34448999999998777421 1111 1778899999999987766543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=70.12 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=16.6
Q ss_pred CCCcEEecCCCcccccccccccccccccccceEE
Q 011151 201 RKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234 (492)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 234 (492)
++|++|++++|... .+|..+. .+|+.|.+..
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 35777777776542 3343333 3556555543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=1.7e-05 Score=80.44 Aligned_cols=233 Identities=20% Similarity=0.182 Sum_probs=106.1
Q ss_pred CCCCCeeecCccccccc--ccccccCCCCCcEEecCCC-ccccccc----ccccccccccccceEEeecccCCCcCcccc
Q 011151 176 LYNLERLNITSCNHLRE--LPQGIGKLRKLMYLDNDDT-WFLRYLP----VGIGELINLRRVTKFVVGGGYDRARSLGSL 248 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 248 (492)
++.|+.|.+.++..+.. +-.....++.|+.|+++++ ......+ .....+.+|+.|++..+.... ...+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is--d~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT--DIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--chhHHHH
Confidence 56666666666543433 2233445666666666652 1111111 122344556666665554222 1222222
Q ss_pred cc-ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecC
Q 011151 249 KK-LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYR 327 (492)
Q Consensus 249 ~~-L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 327 (492)
.. ++.|+.+.+..+..+.+ ..+......+++|++|+++++... ....+......+++|+.|.+....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~~----------~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHGL----------TDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCccc----------hHHHHHHHHHhCcchhhhhhhhcC
Confidence 21 44555555444443332 233355667777888888766521 122222223335555554433222
Q ss_pred --------------CCc-cccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCC
Q 011151 328 --------------GRR-NVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDT 392 (492)
Q Consensus 328 --------------~~~-~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 392 (492)
... +.+.......+++++.+.+.++. ..+... .+.+.+|+.++ ......
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~--------~~~l~gc~~l~-~~l~~~------ 396 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL--------ELSLRGCPNLT-ESLELR------ 396 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch--------HHHhcCCcccc-hHHHHH------
Confidence 111 00101223355555555555554 222110 22333333221 000000
Q ss_pred CCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCccc
Q 011151 393 DGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA 446 (492)
Q Consensus 393 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 446 (492)
...+..++.|.+..|...+...+... ...+.+++.+++.+|..++.
T Consensus 397 ----~~~~~~l~~L~l~~~~~~t~~~l~~~----~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 397 ----LCRSDSLRVLNLSDCRLVTDKGLRCL----ADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ----hccCCccceEecccCccccccchHHH----hhhhhccccCCccCcccccc
Confidence 00223378888888876665443211 00177888899999888774
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00086 Score=56.78 Aligned_cols=105 Identities=27% Similarity=0.392 Sum_probs=69.2
Q ss_pred CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCC--CcC
Q 011151 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC--EHL 358 (492)
Q Consensus 281 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~--~~~ 358 (492)
+...++++.|.+. ....+..++.|..|.+..|.++. +.|..-..+++|..|.+.+|.+. +++
T Consensus 43 ~~d~iDLtdNdl~--------------~l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl 106 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--------------KLDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDL 106 (233)
T ss_pred ccceecccccchh--------------hcccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhc
Confidence 4556777777632 33456677888888888888888 75555557788888888888654 356
Q ss_pred CCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 359 PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 359 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
..+..+|+|++|.+-+|+--+.-.-..+ .+-.+|+|+.|++..
T Consensus 107 ~pLa~~p~L~~Ltll~Npv~~k~~YR~y---------vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLGNPVEHKKNYRLY---------VLYKLPSLRTLDFQK 149 (233)
T ss_pred chhccCCccceeeecCCchhcccCceeE---------EEEecCcceEeehhh
Confidence 6677888888888877762221111111 122677777777765
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00079 Score=57.01 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=58.1
Q ss_pred CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhh-ccCcCCEEEccCCCCccccch--h
Q 011151 96 RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIE-KLLHLKYLSLCGQREIEKLPE--T 172 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~lp~--~ 172 (492)
.+...+++..|+ +.. ++. |..++.|..|.+. +|.+..+-..+. .+++|..|.+.+|. +.++.. .
T Consensus 42 d~~d~iDLtdNd---l~~-l~~-lp~l~rL~tLll~-------nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDND---LRK-LDN-LPHLPRLHTLLLN-------NNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP 108 (233)
T ss_pred cccceecccccc---hhh-ccc-CCCccccceEEec-------CCcceeeccchhhhccccceEEecCcc-hhhhhhcch
Confidence 344556666665 222 222 5556666777776 666666654433 34567777777766 443321 2
Q ss_pred hhcCCCCCeeecCccccccccc----ccccCCCCCcEEecCCC
Q 011151 173 LCELYNLERLNITSCNHLRELP----QGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~l~~~ 211 (492)
+..+++|++|.+-+|. ....+ -.+..+++|+.||..+-
T Consensus 109 La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 5556677777776666 32221 12566777777777654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=8e-05 Score=65.91 Aligned_cols=99 Identities=26% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccc--hh
Q 011151 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLP--ET 172 (492)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp--~~ 172 (492)
+.+.+-|.+.+|. +.++ .....|+.|++|.|+ -|.+..+ ..+..|++|+.|.|+.|. +..+- ..
T Consensus 18 l~~vkKLNcwg~~---L~DI--sic~kMp~lEVLsLS-------vNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LDDI--SICEKMPLLEVLSLS-------VNKISSL-APLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCC---ccHH--HHHHhcccceeEEee-------ccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 4455566666666 3331 114566777777777 5666665 345667777777777776 55442 23
Q ss_pred hhcCCCCCeeecCcccccccccc-----cccCCCCCcEEe
Q 011151 173 LCELYNLERLNITSCNHLRELPQ-----GIGKLRKLMYLD 207 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~-----~~~~l~~L~~L~ 207 (492)
+.++++|+.|.|..|.....-+. .+..||+|+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55667777777766654333222 134566666664
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00094 Score=58.96 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=31.5
Q ss_pred ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcc--cccccccccccCCCCCcEEecCCCcc
Q 011151 151 KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSC--NHLRELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
.+.+|+.|++.++. ++.+ ..+..+++|+.|.++.| +....++.....+++|++|++++|.+
T Consensus 41 ~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33445555555554 3333 12444566666666666 33334444444556666666666654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.00048 Score=61.17 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=75.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC--
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-- 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-- 146 (492)
.++++|..=+++++++... .+++.|++|.++-|. ++..-| |..|++|+.|.|. .|.+.++-
T Consensus 19 ~~vkKLNcwg~~L~DIsic-----~kMp~lEVLsLSvNk---IssL~p--l~rCtrLkElYLR-------kN~I~sldEL 81 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC-----EKMPLLEVLSLSVNK---ISSLAP--LQRCTRLKELYLR-------KNCIESLDEL 81 (388)
T ss_pred HHhhhhcccCCCccHHHHH-----HhcccceeEEeeccc---cccchh--HHHHHHHHHHHHH-------hcccccHHHH
Confidence 4788888888888863322 389999999999998 555223 8899999999999 88888775
Q ss_pred chhhccCcCCEEEccCCCCccccchh-----hhcCCCCCeee
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPET-----LCELYNLERLN 183 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~-----~~~l~~L~~L~ 183 (492)
..+.++++||.|.|..|.-.++-+.. +.-+++|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 35789999999999998755544332 45678888776
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=46.19 Aligned_cols=102 Identities=14% Similarity=0.268 Sum_probs=52.2
Q ss_pred ccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc
Q 011151 92 VKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP 170 (492)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp 170 (492)
+.++++|+.+.+.. . +..+-..+|..++.|+.+.+. .+ +..++. .+.++.+|+.+.+.+ . +..++
T Consensus 8 F~~~~~l~~i~~~~-~---~~~I~~~~F~~~~~l~~i~~~-------~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T---IKKIGENAFSNCTSLKSINFP-------NN-LTSIGDNAFSNCKSLESITFPN-N-LKSIG 73 (129)
T ss_dssp TTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEES-------ST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-
T ss_pred HhCCCCCCEEEECC-C---eeEeChhhccccccccccccc-------cc-ccccceeeeecccccccccccc-c-ccccc
Confidence 34777888888764 3 555455667778778888887 53 666654 366777788888865 3 44444
Q ss_pred hh-hhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCC
Q 011151 171 ET-LCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDD 210 (492)
Q Consensus 171 ~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~ 210 (492)
.. +..+.+|+.+.+..+ +..++ ..+.++ +|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 33 455788888887653 33332 335555 777777654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0005 Score=58.20 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=42.0
Q ss_pred ccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccC-CcccCCCCCCCeEEEeCCCc
Q 011151 399 AFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL-PDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 399 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~ 467 (492)
.++.++.|.+.+|..+.+|++...- +..|+|+.|+|++|+.|++- -..+..+++|+.|.+.+-|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 5667777777777777777653320 14577777777777777752 24456677777777776553
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.00062 Score=57.63 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred ccEEEEecccCCCc-CCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcc
Q 011151 344 LRALLLKNCRNCEH-LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTA 422 (492)
Q Consensus 344 L~~L~L~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 422 (492)
++.++-+++.+... +..+..++.++.|.+.+|..+.+.+....+. ..|+|+.|++++|+.+++..+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----------~~~~L~~L~lsgC~rIT~~GL--- 169 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----------LAPSLQDLDLSGCPRITDGGL--- 169 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----------cccchheeeccCCCeechhHH---
Confidence 45555555543322 2235567777777777777666554444332 567888888888888777665
Q ss_pred ccccccCCCCcceEeecCCCCcc
Q 011151 423 IKGEIIIMPRLSFLEISGCCKLK 445 (492)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~c~~l~ 445 (492)
.++..+++|+.|.|.+-+.+.
T Consensus 170 --~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 170 --ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred --HHHHHhhhhHHHHhcCchhhh
Confidence 355677888888887744443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0044 Score=54.86 Aligned_cols=82 Identities=24% Similarity=0.145 Sum_probs=52.7
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCC--cccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT--WFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.-.+..|+.|++.++..+. +. .+-.+++|+.|.++.| +....++.-..++++|+++.++.|.+.. ...+..++.
T Consensus 39 ~d~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 3446677777777766322 21 2345889999999999 5555666666677999999999887763 333444444
Q ss_pred ccccCCce
Q 011151 251 LNLLRECS 258 (492)
Q Consensus 251 L~~L~~l~ 258 (492)
+.+|..+.
T Consensus 115 l~nL~~Ld 122 (260)
T KOG2739|consen 115 LENLKSLD 122 (260)
T ss_pred hcchhhhh
Confidence 44443333
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.008 Score=31.46 Aligned_cols=17 Identities=35% Similarity=0.864 Sum_probs=7.8
Q ss_pred CCEEEccCCCCccccchh
Q 011151 155 LKYLSLCGQREIEKLPET 172 (492)
Q Consensus 155 L~~L~L~~~~~~~~lp~~ 172 (492)
|++|++++|. ++.+|+.
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 4444444444 3344443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.067 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=5.7
Q ss_pred cCCEEEccCCCCcccc
Q 011151 154 HLKYLSLCGQREIEKL 169 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~l 169 (492)
+|+.|++++|. ++++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 44555555554 4433
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.05 Score=28.40 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=12.4
Q ss_pred eeEEecchhhhhhccccccccCchhhc
Q 011151 125 LRALKLEVRQRWLCKNFIKKIPTNIEK 151 (492)
Q Consensus 125 L~~L~L~~~~~~~~~~~~~~l~~~~~~ 151 (492)
|++|+++ +|.+..+|..+++
T Consensus 2 L~~Ldls-------~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLS-------GNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEET-------SSEESEEGTTTTT
T ss_pred ccEEECC-------CCcCEeCChhhcC
Confidence 6667776 6666666655543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.29 Score=39.23 Aligned_cols=114 Identities=14% Similarity=0.243 Sum_probs=56.6
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-h
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-N 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~ 148 (492)
+++.+.+.. .+..+... ++.+++.|+.+.+.++ +...-..+|..++.++.+.+. + .+..++. .
T Consensus 13 ~l~~i~~~~-~~~~I~~~---~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~-------~-~~~~i~~~~ 76 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGEN---AFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFP-------N-NLKSIGDNA 76 (129)
T ss_dssp T--EEEETS-T--EE-TT---TTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEET-------S-TT-EE-TTT
T ss_pred CCCEEEECC-CeeEeChh---hccccccccccccccc----ccccceeeeeccccccccccc-------c-ccccccccc
Confidence 666666653 34433332 3348888999998774 455455668888889999997 5 5555554 4
Q ss_pred hhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccccccccc-ccccCCCCCc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELP-QGIGKLRKLM 204 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~ 204 (492)
+..+++|+.+.+..+ +..++.. +.++ +|+.+.+..+ ...++ ..+.++++|+
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 667899999999764 4555443 5666 8888888763 33333 3456666653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.0074 Score=52.40 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+...+.|+++.|. ... +...|..++.|..|+++ .+.+..+|..+.....++.+.+..|. ....|.+.
T Consensus 40 ~~kr~tvld~~s~r---~vn-~~~n~s~~t~~~rl~~s-------knq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR---LVN-LGKNFSILTRLVRLDLS-------KNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhH---HHh-hccchHHHHHHHHHhcc-------HhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44455555555554 222 22224444445555555 55555555555555555555555544 45555555
Q ss_pred hcCCCCCeeecCccc
Q 011151 174 CELYNLERLNITSCN 188 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~ 188 (492)
++.+++++++...+.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 555555555555554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.011 Score=51.31 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=77.1
Q ss_pred hccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccccc
Q 011151 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIG 198 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 198 (492)
+..++...+||++ .+.+..+-..++-++.|..|+++.+. +..+|..++....+..++...|. ....|...+
T Consensus 38 i~~~kr~tvld~~-------s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLS-------SNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhh-------hhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 5677889999999 88888888888889999999999999 89999999999999999988887 788899999
Q ss_pred CCCCCcEEecCCCccc
Q 011151 199 KLRKLMYLDNDDTWFL 214 (492)
Q Consensus 199 ~l~~L~~L~l~~~~~~ 214 (492)
..+.+++++..++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999988653
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.15 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=13.6
Q ss_pred CCCCCeEEEeCCCchhhhh
Q 011151 454 KTTLQKLLIGRCPILEERC 472 (492)
Q Consensus 454 l~~L~~L~l~~c~~l~~~~ 472 (492)
+++|+.|++++|+++++.-
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4677788888887776653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.47 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=10.5
Q ss_pred CcCCEEEccCCCCccccchh
Q 011151 153 LHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~ 172 (492)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455556665555 5555543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.47 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=10.5
Q ss_pred CcCCEEEccCCCCccccchh
Q 011151 153 LHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~ 172 (492)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455556665555 5555543
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.32 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=13.6
Q ss_pred CCCcceEeecCCCCccc
Q 011151 430 MPRLSFLEISGCCKLKA 446 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~~ 446 (492)
+|+|+.|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57888888888888775
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.97 E-value=0.043 Score=54.73 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=26.1
Q ss_pred cccccCCCCcceEeecCCCCcccCC-----cccCCCCCCCeEEEeCCCchh
Q 011151 424 KGEIIIMPRLSFLEISGCCKLKALP-----DLLLQKTTLQKLLIGRCPILE 469 (492)
Q Consensus 424 ~~~~~~~~~L~~L~l~~c~~l~~l~-----~~l~~l~~L~~L~l~~c~~l~ 469 (492)
+......+.+..++++.+.....-+ ..-.+. .+..++++.++.-.
T Consensus 397 ~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 397 AAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITA 446 (478)
T ss_pred hhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhh
Confidence 3445567778888887754443322 112244 77777777777533
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
LP L L++LK+ + + + I L L+ L L G + P
Sbjct: 198 LPASIANLQNLKSLKIR-------NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228
L+RL + C++L LP I +L +L LD L LP I +L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 4e-19
Identities = 64/356 (17%), Positives = 104/356 (29%), Gaps = 109/356 (30%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
L D L L + + P +L HL+++++ + +LP+T+
Sbjct: 68 LKATADLLEDATQPGRVAL--ELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQ 124
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234
+ LE L + + N LR LP I L +L L L LP +
Sbjct: 125 QFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG-- 181
Query: 235 VGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294
L +L+ L L IR L A + +NL L + L
Sbjct: 182 ----------LVNLQSLRL-EWTGIRSLP----------ASIANLQNLKSLKIRNSPLS- 219
Query: 295 GDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354
L A+ L L L L+ C
Sbjct: 220 ------------ALGPAIH--------------------------HLPKLEELDLRGCTA 241
Query: 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEE 413
+ PP G L+ L ++ D S+++ P
Sbjct: 242 LRNYPPIFGGRAPLKRLILK-------------------DCSNLLTLPL----------- 271
Query: 414 LEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILE 469
+I + +L L++ GC L LP L+ Q +L+ +
Sbjct: 272 ------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 9e-16
Identities = 54/274 (19%), Positives = 93/274 (33%), Gaps = 71/274 (25%)
Query: 113 EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172
P +L+ L+ + ++ + ++P +++ L+ L+L + LP +
Sbjct: 94 PQFPDQAFRLSHLQHMTID-------AAGLMELPDTMQQFAGLETLTLARNP-LRALPAS 145
Query: 173 LCELYNLERLNITSCNHLRELPQGIGK---------LRKLMYLDNDDTWFLRYLPVGIGE 223
+ L L L+I +C L ELP+ + L L L + T +R LP I
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIAN 204
Query: 224 LINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV 283
L N LK L +R + LG + L
Sbjct: 205 LQN---------------------LKSLK-IRNSPLSALG----------PAIHHLPKLE 232
Query: 284 ELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNWVMS 340
EL L G LK L++ + + +P + +
Sbjct: 233 ELDLR------------GCTALRNYPPIFGGRAPLKRLILKDC----SNLLTLPLD-IHR 275
Query: 341 LTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIE 373
LT L L L+ C N LP + +LP+ + +
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 113 EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172
L L L L L ++ P LK L L + LP
Sbjct: 219 SALGPAIHHLPKLEELDLR------GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD---NDDTWFLRYLPV 219
+ L LE+L++ C +L LP I +L + + ++ PV
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 49/323 (15%), Positives = 86/323 (26%), Gaps = 73/323 (22%)
Query: 178 NLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGG 237
E L LR + + ++ D + N G
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRN-------RWHSAWRQANSNNPQIETRTG 65
Query: 238 GYDRA--RSLGSLKKLNL----LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR 291
+A L + LR + + + +L + +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQF----------PDQAFRLSHLQHMTIDAAG 115
Query: 292 LRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALL 348
L L + + L+ L + N +P + SL LR L
Sbjct: 116 L-------------MELPDTMQQFAGLETLTLAR-----NPLRALP-ASIASLNRLRELS 156
Query: 349 LKNCRNCEHLPP----------LGKLPSLESLYIEGMQSVKRVGNEFLGVES----DTDG 394
++ C LP L +L+SL +E ++ + +++
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRN 215
Query: 395 SSIIAFP-------KLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKAL 447
S + A KL+ L L L L + C L L
Sbjct: 216 SPLSALGPAIHHLPKLEELDLRGCTALRN------YPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 448 PDLLLQKTTLQKLLIGRCPILEE 470
P + + T L+KL + C L
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSR 292
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 3e-15
Identities = 88/598 (14%), Positives = 164/598 (27%), Gaps = 192/598 (32%)
Query: 3 DIGE---EYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGE 59
+ GE +Y +IL F F + D CK V D + + S E E+ +
Sbjct: 10 ETGEHQYQYKDIL--SVFEDAFVDNFD-----CKD---VQDMPKSILSKE----EI---D 52
Query: 60 ELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVES--DDYSWFSEVL-- 115
+ ++ L L TL K ++ + E +Y + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLS------------KQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 116 ----------------------PQLFDKLTCLRALKLEVRQRWL---------------- 137
Q+F K R ++ L
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 138 ----------CKN--FIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNIT 185
C + K+ I +L+L E + E L +L N T
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 186 S-CNHLRELPQGI----GKLRKLM----Y------LDN-DDTWFLRYLPVGIGELINLR- 228
S +H + I +LR+L+ Y L N + + L+ R
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 229 -RVTKFVVGG------------GYDRARSLGSL-KKLNL----LRE--CSIRGLGGVSDA 268
+VT F+ L K L+ L + +S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSII 333
Query: 269 GEA-----------RRAELEKKKNLVELGLHFDRLRDGDEEQARRRE----------SER 307
E+ + +K ++E L + L + E +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSL--NVL-EPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 308 LLEAL--GPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLP 365
LL + + +V+++ + ++V + S ++ ++ L+ E+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLEN------EY 443
Query: 366 SLESLYIEGMQSVKRVGNEFLGVESDTDG--SSIIAFPKLKHLKFYDMEELEEWDFGTAI 423
+L ++ K ++ L D S I HLK ++E E
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGH----HLK--NIEHPERMTL---- 492
Query: 424 KGEIIIMPR----LSFLE------ISGCCKLKALPDLLLQKTTLQKLLIGRCPILEER 471
FLE + ++ + L Q + + P E
Sbjct: 493 ------FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 9e-06
Identities = 53/340 (15%), Positives = 95/340 (27%), Gaps = 139/340 (40%)
Query: 41 FAQYL-CSNECLTVEVHSGEELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLR 99
+YL C + L EV + ++ E + G ++ W N K +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IRDG----LATWDNWKHVN--- 351
Query: 100 SLLVESDDYSWFSEVLPQLFDKLT-----CLRALK-LEVRQR-WLCKNFIK--KIPTNI- 149
DKLT L L+ E R+ F IPT +
Sbjct: 352 -------------------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 150 ----------------EKL----------------LHLKYLSLCGQREIEK-LPETLCEL 176
KL + YL L + E E L ++ +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 177 YNLERLNITSCN------------------HLRELPQG--IGKLRKLMYLDNDDTWFLR- 215
YN+ + T + HL+ + + R + +LD FL
Sbjct: 453 YNIPK---TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR---FLEQ 505
Query: 216 ------YLPVGIGELIN----LRRVTKFVVGGGYDRARSLGSLKKLNLLRECS---IRGL 262
G ++N L+ ++ R + ++ L+ L + I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIEENLICS- 562
Query: 263 GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302
K +L+ + L + + E+A +
Sbjct: 563 ---------------KYTDLLRIALMAE--DEAIFEEAHK 585
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 52/437 (11%), Positives = 120/437 (27%), Gaps = 96/437 (21%)
Query: 63 INSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKL 122
FG++++ + + + + L + D + E+ P D
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422
Query: 123 TCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSL-------------------CGQ 163
L+ ++ N I I I++L L+ +
Sbjct: 423 ISLKDTQIG-----NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Query: 164 REIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD---NDDTWFLRYLPVG 220
++ E + L +L + + +C ++ +LP + L +L L+ N
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR----GISAAQL 533
Query: 221 IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK 280
+ L D + ++ + ++ A L+K
Sbjct: 534 KADWTRLA-----------DDEDTGPKIQIFY-MGYNNLEEFP--------ASASLQKMV 573
Query: 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNW 337
L L +++R LEA G L +L +D N +P ++
Sbjct: 574 KLGLLDCVHNKVRH--------------LEAFGTNVKLTDLKLD-----YNQIEEIPEDF 614
Query: 338 VMSLTNLRALLLKNCRNCEHLPP---LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDG 394
+ L + +++P + + S+ N+ +
Sbjct: 615 CAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFS--------YNKIGSEGRNISC 665
Query: 395 S-SIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQ 453
S + L + +S + +S + ++P+ L+
Sbjct: 666 SMDDYKGINASTV------TLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLK 718
Query: 454 KTTLQKLLIGRCPILEE 470
+L
Sbjct: 719 PKDGN---YKNTYLLTT 732
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 25/134 (18%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN--------IEKLLHLKYLSLCG 162
+ +LF + + + L N + IP N + L + L
Sbjct: 685 IQKFPTELFATGSPISTI-------ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 163 QREIEKLPETL--CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTW------FL 214
+ + L + L L +++ S N P +L L
Sbjct: 738 NK-LTSLSDDFRATTLPYLSNMDV-SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Query: 215 RYLPVGIGELINLR 228
R P GI +L
Sbjct: 796 RQWPTGITTCPSLI 809
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 55/416 (13%), Positives = 109/416 (26%), Gaps = 109/416 (26%)
Query: 83 SVPISIWGNVKGLRGLRSL------LVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRW 136
+P ++ L L+SL + + L D ++ +
Sbjct: 506 QLPDFLYD----LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG----- 556
Query: 137 LCKNFIKKIPTN--IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP 194
N +++ P + ++K++ L L + + L L L + N + E+P
Sbjct: 557 --YNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEA-FGTNVKLTDLKL-DYNQIEEIP 611
Query: 195 QGIGK-LRKLMYLD---NDDTWFLRYLP--VGIGELINLRRV-------TKFVVGGGYDR 241
+ ++ L N L+Y+P + + V
Sbjct: 612 EDFCAFTDQVEGLGFSHNK----LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--- 664
Query: 242 ARSLGSLKKLNL----LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDE 297
S+ K +N L I+ + + L + +
Sbjct: 665 -CSMDDYKGINASTVTLSYNEIQKF---------PTELFATGSPISTIILSNNLMTS--- 711
Query: 298 EQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC-E 356
P N + Y+ L + L+ N
Sbjct: 712 ----------------IPENSLKPKDGNYKN------------TYLLTTIDLRF--NKLT 741
Query: 357 HLPP---LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEE 413
L LP L ++ + N F + + +LK +
Sbjct: 742 SLSDDFRATTLPYLSNMDVS--------YNCFSSFP-----TQPLNSSQLKAFGIRHQRD 788
Query: 414 LEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILE 469
E I P L L+I ++ + + L + L L I P +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGS-NDIRKVDEKLTPQ--LYILDIADNPNIS 841
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 43/313 (13%)
Query: 145 IPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIG--KLRK 202
+++ + LSL G ++P+ + +L L+ L+ + + G +L
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF-GTHSETVSGRLFGDEELTP 373
Query: 203 LMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGL 262
M + + Y + + L ++ +R + +KK + + +
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSD--LLQDAINRNPEMKPIKKDSRI-SLKDTQI 430
Query: 263 GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELV 322
G +++ +++ L + +
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFT-------------------YDNIAVDWED 471
Query: 323 IDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRV 381
+ ++ +L +L + L NC N LP L LP L+SL I
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA-------- 523
Query: 382 GNEFLGVESDTDGSSII--AFPKLKHLKFYDMEE--LEEWDFGTAIKGEIIIMPRLSFLE 437
N + + + ++ + M LEE+ +++ M +L L+
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK----MVKLGLLD 579
Query: 438 ISGCCKLKALPDL 450
K++ L
Sbjct: 580 CVH-NKVRHLEAF 591
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
P + L+A + ++ +++ PT I L L + G +I K+ E L
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI-GSNDIRKVDEKLT 826
Query: 175 ELYNLERLNITSCNHLRELPQG--IGKLRKLMYL 206
L L+I + N + + MY+
Sbjct: 827 P--QLYILDI-ADNPNISIDVTSVCPYIEAGMYV 857
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 29/186 (15%)
Query: 2 EDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEV------ 55
+ E+ ++S D +G+ +HD+ DF ++ +
Sbjct: 408 TEEVEDILQEFVNKSLLF---CDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQF 464
Query: 56 --HSGEELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSE 113
+ + + L H ++ K + L +L+ W
Sbjct: 465 QRYHQPHTLSPDQEDCMYWYNFLAYHMASA---------KMHKELCALMF---SLDWIKA 512
Query: 114 VLPQLFDKLTCLRALKLEVRQ-RWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET 172
+L L E + R + + N ++ L L L Q +
Sbjct: 513 KT-----ELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPFPNIVQLG 567
Query: 173 LCELYN 178
LCE
Sbjct: 568 LCEPET 573
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 52/438 (11%), Positives = 118/438 (26%), Gaps = 89/438 (20%)
Query: 45 LCSNECLTVEVHSGEELAINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVE 104
S+E ++ ++ + L+ SI K + +
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI----KKSSRITLKDTQ 187
Query: 105 SDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKN-FIKKIPTNIEKLLHLKYLSLCGQ 163
S + + +LT LR + + F+ + + + +Y
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMG-------NSPFVAENICEAWENENSEYAQQ--- 237
Query: 164 REIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD---NDDTWFLRYLPVG 220
+ L +L + + +C +L +LP + L ++ ++ N
Sbjct: 238 --YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR----GISGEQL 291
Query: 221 IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL--RECSIRGLGGVSDAGEARRAELEK 278
+ L +K+ ++ +++ + L+K
Sbjct: 292 KDDWQAL---------------ADAPVGEKIQIIYIGYNNLKTFPVET--------SLQK 328
Query: 279 KKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPR 335
K L L +++L L A G L L + N +P
Sbjct: 329 MKKLGMLECLYNQLEG-------------KLPAFGSEIKLASLNLA-----YNQITEIPA 370
Query: 336 NWVMSLTNLRALLLKNCRNCEHLPP---LGKLPSLESLYIEGMQSVKRVGNEFLGVESDT 392
N+ + L + + +++P + + ++ NE V+
Sbjct: 371 NFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFS--------YNEIGSVDGKN 421
Query: 393 DGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLL 452
K ++ + L K LS + + G L +P L
Sbjct: 422 FDPLDPTPFKGINVSSIN---LSNNQISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSL 477
Query: 453 QKTTLQKLLIGRCPILEE 470
+ +L
Sbjct: 478 ---KDENENFKNTYLLTS 492
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 40/287 (13%), Positives = 88/287 (30%), Gaps = 64/287 (22%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
+ K+ L L+ N ++ + L L+L + I ++P C
Sbjct: 322 VETSLQKMKKLGMLECL-------YNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFC 373
Query: 175 E-LYNLERLNITSCNHLRELPQ--GIGKLRKLMYLD-------NDDTWFLRYLPVGIGEL 224
+E L+ + N L+ +P + + +D + D L +
Sbjct: 374 GFTEQVENLSF-AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 225 INLRRV-------TKFVVGGGYDRARSLGSLKKLNLLR--ECSIRGLGGVSDAGEARRAE 275
IN+ + +KF + L+ + + + ++ +
Sbjct: 433 INVSSINLSNNQISKFP-------KELFSTGSPLSSINLMGNMLTEIP--KNSLKDENEN 483
Query: 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---V 332
+ L + L F++L ++ P L + + N
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFR-----------ATTLPYLVGIDLS-----YNSFSK 527
Query: 333 VPRNWVMSLTNLRALLLKNCRNCEH------LPP-LGKLPSLESLYI 372
P ++ + L+ ++N R+ + P + PSL L I
Sbjct: 528 FPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 25/125 (20%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIE--KLLHLKYLSLCGQREIEKLPET 172
+ F L ++ L N + K+ + L +L + L K P
Sbjct: 480 ENENFKNTYLLTSI-------DLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ 531
Query: 173 LCELYNLERLNI-----TSCNHL-RELPQGIGKLRKLMYLD---NDDTWFLRYLPVGIGE 223
L+ I N RE P+GI L L ND +R + I
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND----IRKVNEKI-- 585
Query: 224 LINLR 228
N+
Sbjct: 586 TPNIS 590
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 43/319 (13%), Positives = 93/319 (29%), Gaps = 66/319 (20%)
Query: 172 TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD----NDDTWFLRYLPVGIGELINL 227
+L + L++ +P IG+L +L L + + P GI ++
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGL 287
+ K + +L+++C + ++ ++G
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDC----INSDPQQKSIKK-SSRITLKDTQIGQ 190
Query: 288 HFDRLRDGDEEQARRRESERLLEALGPPPNLKELVID------------------EYRGR 329
+ + + +A+ L++ + EY +
Sbjct: 191 LSNNI-------------TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Query: 330 RNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGV 388
W +L +L + + NC N LP L LP ++ + + N +
Sbjct: 238 YKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA--------CNRGISG 288
Query: 389 ESDTDGSSIIA-FPKLKHLKFYDM-----EELE-EWDFGTAIKGEIIIMPRLSFLEISGC 441
E D +A P + ++ + + E M +L LE
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK--------MKKLGMLECLY- 339
Query: 442 CKLKALPDLLLQKTTLQKL 460
+L+ + L L
Sbjct: 340 NQLEGKLPAFGSEIKLASL 358
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 58/282 (20%), Positives = 86/282 (30%), Gaps = 86/282 (30%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
LP L +L L + N + +P LL L S + LP LC
Sbjct: 76 LPALPPELRTLE----------VSGNQLTSLPVLPPGLLELSIFSNPLTH-LPALPSGLC 124
Query: 175 ELY--------------NLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVG 220
+L+ L+ L++ S N L LP +L KL +N L LP+
Sbjct: 125 KLWIFGNQLTSLPVLPPGLQELSV-SDNQLASLPALPSELCKLWAYNNQ----LTSLPML 179
Query: 221 IGELINLR----RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAEL 276
L L ++ L KL + L A
Sbjct: 180 PSGLQELSVSDNQLASLPT--------LPSELYKLWAY-NNRLTSL----------PALP 220
Query: 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VV 333
L EL + +RL P LKEL++ N +
Sbjct: 221 S---GLKELIVSGNRLTSLPVL----------------PSELKELMV-----SGNRLTSL 256
Query: 334 PRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEG 374
P + L +L + + LP L L S ++ +EG
Sbjct: 257 PM----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG 293
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 48/294 (16%), Positives = 86/294 (29%), Gaps = 65/294 (22%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFD------KLTCLRALKLEVRQRWLCKNFIKKIP 146
GL L + S+ + + L +LT L L +++ + N + +P
Sbjct: 98 VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP 157
Query: 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYL 206
+L L + ++ LP L+ L++ S N L LP +L KL
Sbjct: 158 ALPSELCKLWAYNN----QLTSLPM---LPSGLQELSV-SDNQLASLPTLPSELYKLWAY 209
Query: 207 DNDDTWFLRYLPVGIGELINLR----RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGL 262
+N L LP L L R+T LK+L + + L
Sbjct: 210 NNR----LTSLPALPSGLKELIVSGNRLTSL--------PVLPSELKELM-VSGNRLTSL 256
Query: 263 GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELV 322
L+ L ++ ++L RL E+L + +
Sbjct: 257 ----------PMLPS---GLLSLSVYRNQLT-------------RLPESLIHLSSETTVN 290
Query: 323 IDEYRGRRN---VVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIE 373
++ N + +T+ R + L
Sbjct: 291 LEG-----NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 45/260 (17%), Positives = 71/260 (27%), Gaps = 74/260 (28%)
Query: 137 LCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG 196
+ ++ + +P + H+ L + + LP L L + S N L LP
Sbjct: 47 VGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPA---LPPELRTLEV-SGNQLTSLPVL 99
Query: 197 IGKLRKLMYLDNDDTWF----------------LRYLPVGIGELINLR----RVTKFVVG 236
L +L N T L LPV L L ++
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL--- 156
Query: 237 GGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGD 296
L KL + L L EL + ++L
Sbjct: 157 -----PALPSELCKLWAY-NNQLTSLP----------MLPS---GLQELSVSDNQLASLP 197
Query: 297 EEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356
P L +L Y R +P + L+ L++ R
Sbjct: 198 TL----------------PSELYKL--WAYNNRLTSLPA----LPSGLKELIVSGNR-LT 234
Query: 357 HLPPLGKLPSLESLYIEGMQ 376
LP L L+ L + G +
Sbjct: 235 SLPVL--PSELKELMVSGNR 252
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-09
Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 10/128 (7%)
Query: 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECLTVEVHSGEE 60
++D + L+ R + T K+ I+H F +++ + + + E+
Sbjct: 426 LDDEVADRLKRLSKRGALLSGK---RMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQ 482
Query: 61 L---AINSFGEKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQ 117
N+ H+ + S ++ +D+ F ++ +
Sbjct: 483 RLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKT----TEETVIRPEDFPKFMQLHQK 538
Query: 118 LFDKLTCL 125
+D L
Sbjct: 539 FYDSLKNF 546
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 39/266 (14%), Positives = 84/266 (31%), Gaps = 61/266 (22%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
LT + +L L N + + + L YL++ + ++ + + L +
Sbjct: 128 LANLTKMYSL-------NLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTD 178
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVT 231
L L++ + N + ++ + L L Y + + + + L ++T
Sbjct: 179 LYSLSL-NYNQIEDIS-PLASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKIT 234
Query: 232 KFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR 291
L +L +L L E + ++ ++ L L + ++
Sbjct: 235 DL---------SPLANLSQLTWL-EIGTNQISDIN--------AVKDLTKLKMLNVGSNQ 276
Query: 292 LRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALL 348
+ D + L L L ++ N + LTNL L
Sbjct: 277 ISD--------------ISVLNNLSQLNSLFLN-----NNQLGNEDMEVIGGLTNLTTLF 317
Query: 349 LKNCRNCEHLPPLGKLPSLESLYIEG 374
L + + PL L ++S
Sbjct: 318 LSQN-HITDIRPLASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 51/307 (16%), Positives = 88/307 (28%), Gaps = 85/307 (27%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
L L L ++ N I I ++ L +L+ L L + I + L L
Sbjct: 84 LSNLVKLTNL-------YIGTNKITDIS-ALQNLTNLRELYL-NEDNISDISP-LANLTK 133
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVT 231
+ LN+ NH + + L YL ++ ++ + I L +L ++
Sbjct: 134 MYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES-KVKDVT-PIANLTDLYSLSLNYNQIE 190
Query: 232 KFVVGGGYDRARSLGSLKKLNLL--RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHF 289
L SL L+ I + + L L +
Sbjct: 191 DI---------SPLASLTSLHYFTAYVNQITDITP-----------VANMTRLNSLKIGN 230
Query: 290 DRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMS------LTN 343
+++ D L L L L I N + LT
Sbjct: 231 NKITD--------------LSPLANLSQLTWLEIGT----------NQISDINAVKDLTK 266
Query: 344 LRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKL 403
L+ L + + + + L L L SL++ N+ + D I L
Sbjct: 267 LKMLNVGSNQ-ISDISVLNNLSQLNSLFLN--------NNQL----GNEDMEVIGGLTNL 313
Query: 404 KHLKFYD 410
L
Sbjct: 314 TTLFLSQ 320
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 40/236 (16%), Positives = 66/236 (27%), Gaps = 80/236 (33%)
Query: 137 LCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG 196
I +I L L + + + T EL ++ +L + + + + G
Sbjct: 7 TLPAPINQI-FPDADLAEGIRAVL-QKASVTDVV-TQEELESITKLVV-AGEKVASIQ-G 61
Query: 197 IGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRE 256
I L L YL+ L I ++ L L L L +
Sbjct: 62 IEYLTNLEYLN------LNGNQ--ITDISPLSN---------------LVKLTNLYI-GT 97
Query: 257 CSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPP 316
I + + L+ NL EL L+ D + D + L
Sbjct: 98 NKITDI-----------SALQNLTNLRELYLNEDNISD--------------ISPLA--- 129
Query: 317 NLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYI 372
+LT + +L L N L PL + L L +
Sbjct: 130 -----------------------NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 71/243 (29%)
Query: 140 NFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199
IK+I + +L ++ + T EL +++++ + + ++ + QGI
Sbjct: 9 TPIKQI-FPDDAFAETIKDNL-KKKSVTDA-VTQNELNSIDQIIA-NNSDIKSV-QGIQY 63
Query: 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSI 259
L + L + + ++ L +L +L L L E I
Sbjct: 64 LPNVTKLFLNGN--------KLTDIKPLT---------------NLKNLGWLFL-DENKI 99
Query: 260 RGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK 319
+ L L+ K L L L + + D + L P L+
Sbjct: 100 KDLSS-----------LKDLKKLKSLSLEHNGISD--------------INGLVHLPQLE 134
Query: 320 ELVIDEYRGRRNVVPRNWV------MSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIE 373
L + N + LT L L L++ + + PL L L++LY+
Sbjct: 135 SLYLG----------NNKITDITVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLS 183
Query: 374 GMQ 376
Sbjct: 184 KNH 186
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 6e-08
Identities = 45/271 (16%), Positives = 75/271 (27%), Gaps = 62/271 (22%)
Query: 112 SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE 171
S F L R N + + L L + + LP+
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENR----NEAVSLLKEC-LINQFSELQL-NRLNLSSLPD 76
Query: 172 TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR--- 228
L + L I + N L LP+ L L DN L LP L +L
Sbjct: 77 NLPP--QITVLEI-TQNALISLPELPASLEYLDACDNR----LSTLPELPASLKHLDVDN 129
Query: 229 -RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGL 287
++T L+ +N + L E +L L +
Sbjct: 130 NQLTML--------PELPALLEYIN-ADNNQLTML-------------PELPTSLEVLSV 167
Query: 288 HFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRAL 347
++L L L P +L+ L + +P + +
Sbjct: 168 RNNQLTF--------------LPEL--PESLEALDVS--TNLLESLPA-VPVRNHHSEET 208
Query: 348 LLK-NCRNC--EHLPP-LGKLPSLESLYIEG 374
+ CR H+P + L ++ +E
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILED 239
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 8e-08
Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 64/266 (24%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
LT L L + N + I + KL +L+ L + I + L L N
Sbjct: 173 LANLTTLERL-------DISSNKVSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTN 222
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVT 231
L+ L++ + N L+++ + L L LD + + L + L L +++
Sbjct: 223 LDELSL-NGNQLKDIG-TLASLTNLTDLDLANN-QISNLA-PLSGLTKLTELKLGANQIS 278
Query: 232 KFVVGGGYDRARSLGSLKKLNLLR--ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHF 289
L L L L E + + + + KNL L L+F
Sbjct: 279 NIS---------PLAGLTALTNLELNENQLEDI-----------SPISNLKNLTYLTLYF 318
Query: 290 DRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPR-NWVMSLTNLRALL 348
+ + D + + L+ L N V + + +LTN+ L
Sbjct: 319 NNISD--------------ISPVSSLTKLQRLFFYN-----NKVSDVSSLANLTNINWLS 359
Query: 349 LKNCRNCEHLPPLGKLPSLESLYIEG 374
+ L PL L + L +
Sbjct: 360 AGHN-QISDLTPLANLTRITQLGLND 384
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 68/366 (18%), Positives = 109/366 (29%), Gaps = 103/366 (28%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
LT L + + N I I + L +L L+L + I + L L N
Sbjct: 86 LKNLTKLVDILMN-------NNQIADIT-PLANLTNLTGLTLFNNQ-ITDID-PLKNLTN 135
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVT 231
L RL + S N + ++ + L L L + + L + L L +V+
Sbjct: 136 LNRLEL-SSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNKVS 190
Query: 232 KFVVGGGYDRARSLGSLKKLNLL--RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHF 289
L L L L I + L NL EL L+
Sbjct: 191 DIS---------VLAKLTNLESLIATNNQISDITP-----------LGILTNLDELSLNG 230
Query: 290 DRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRN------WVMSLTN 343
++L+D + L NL +L + N + LT
Sbjct: 231 NQLKD--------------IGTLASLTNLTDLDLAN----------NQISNLAPLSGLTK 266
Query: 344 LRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKL 403
L L L ++ PL L +L +L + N+ I L
Sbjct: 267 LTELKLGAN-QISNISPLAGLTALTNLELN--------ENQL---------EDISPISNL 308
Query: 404 KHLKFYDMEELEEWDFGTAIKGEIII--MPRLSFLEISGCCKLKALPDLLLQKTTLQKLL 461
K+L + + I + + +L L K+ + L T + L
Sbjct: 309 KNLTYLTLY-------FNNISDISPVSSLTKLQRLFFYN-NKVSDVSS-LANLTNINWLS 359
Query: 462 IGRCPI 467
G I
Sbjct: 360 AGHNQI 365
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 54/343 (15%), Positives = 108/343 (31%), Gaps = 70/343 (20%)
Query: 140 NFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199
I +I L L G+ + + +L + L ++ + G+
Sbjct: 12 TPINQI-FTDTALAEKMKTVL-GKTNVTDTV-SQTDLDQVTTLQA-DRLGIKSID-GVEY 66
Query: 200 LRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVTKFVVGGGYDRARSLGSLKKLN 252
L L ++ + L + + L L ++ L +L L
Sbjct: 67 LNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNNQIADITPLAN------LTNLTGLT 118
Query: 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL 312
L I + L+ NL L L + + D + AL
Sbjct: 119 -LFNNQITDI-----------DPLKNLTNLNRLELSSNTISD--------------ISAL 152
Query: 313 GPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLY- 371
+L++L ++ P + +LT L L + + + + L KL +LESL
Sbjct: 153 SGLTSLQQLSFG--NQVTDLKP---LANLTTLERLDISSNK-VSDISVLAKLTNLESLIA 206
Query: 372 ----IEGMQSVKRVGN-EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGE 426
I + + + N + L + + I L +L D+ I
Sbjct: 207 TNNQISDITPLGILTNLDELSL-NGNQLKDIGTLASLTNLTDLDLA-------NNQISNL 258
Query: 427 III--MPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467
+ + +L+ L++ ++ + L T L L + +
Sbjct: 259 APLSGLTKLTELKLGA-NQISNISP-LAGLTALTNLELNENQL 299
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETL 173
LP L L L L + N + +P L L+ L L G ++ LP L
Sbjct: 92 LPLLGQTLPALTVL-------DVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGL 143
Query: 174 CE-LYNLERLNITSCNHLRELPQGI-GKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVT 231
LE+L++ + N+L ELP G+ L L L + L +P G L
Sbjct: 144 LTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAF 201
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 34/163 (20%)
Query: 117 QLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE-TLCE 175
Q+ L L L L N ++ +P + L L L + R + LP L
Sbjct: 71 QVDGTLPVLGTL-------DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRG 122
Query: 176 LYNLERLNITSCNHLRELPQGI-GKLRKLMYLD---NDDTWFLRYLPVGI-GELINLRRV 230
L L+ L + N L+ LP G+ KL L N+ L LP G+ L NL +
Sbjct: 123 LGELQELYL-KGNELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTL 177
Query: 231 T------KFVVGGGYDRARSLGSLKKLNLLR-----ECSIRGL 262
+ G + L L C I
Sbjct: 178 LLQENSLYTIPKGFFG----SHLLPFAFLHGNPWLCNCEILYF 216
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 27/139 (19%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
L +L L L N I+ + L L +S ++ +LP
Sbjct: 292 LSELPPNLYYL----------NASSNEIRSLCDLPPSLEEL-NVSNN---KLIELPALPP 337
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFV 234
LERL S NHL E+P+ L++L N LR P + +LR +
Sbjct: 338 ---RLERLIA-SFNHLAEVPELPQNLKQLHVEYNP----LREFPDIPESVEDLRMNSHLA 389
Query: 235 VGGGYDRARSLGSLKKLNL 253
+ +LK+L++
Sbjct: 390 -----EVPELPQNLKQLHV 403
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 48/281 (17%), Positives = 87/281 (30%), Gaps = 81/281 (28%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLL-------------HLKYLSLC 161
+P + + + + P + L L
Sbjct: 26 MPVEAENVKSKTEYYN------AWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79
Query: 162 GQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGI 221
+ LPE +LE L SCN L ELP+ L+ L+ +N+ L LP +
Sbjct: 80 NLG-LSSLPE---LPPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLK-ALSDLPPLL 133
Query: 222 GELI----NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELE 277
L L ++ + ++ LK ++ + S++ L +
Sbjct: 134 EYLGVSNNQLEKLPEL---------QNSSFLKIID-VDNNSLKKL-------------PD 170
Query: 278 KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNW 337
+L + ++L + L L P L + D N
Sbjct: 171 LPPSLEFIAAGNNQLEE--------------LPELQNLPFLTAIYAD----------NNS 206
Query: 338 VMSL----TNLRALLLKNCRNCEHLPPLGKLPSLESLYIEG 374
+ L +L +++ N E LP L LP L ++Y +
Sbjct: 207 LKKLPDLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADN 246
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 38/247 (15%), Positives = 64/247 (25%), Gaps = 75/247 (30%)
Query: 140 NFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSC------------ 187
+ + ++P E + P E + + C
Sbjct: 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80
Query: 188 NHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGS 247
L LP+ L L+ N L LP L +L
Sbjct: 81 LGLSSLPELPPHLESLVASCNS----LTELPELPQSLKSLL------------------- 117
Query: 248 LKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307
N ++ L L LG+ ++L
Sbjct: 118 --VDN-NNLKALSDLP----------------PLLEYLGVSNNQLEK------------- 145
Query: 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSL 367
L L LK + +D ++ +P +L + N + E LP L LP L
Sbjct: 146 -LPELQNSSFLKIIDVDNNSLKK--LPD----LPPSLEFIAAGNNQ-LEELPELQNLPFL 197
Query: 368 ESLYIEG 374
++Y +
Sbjct: 198 TAIYADN 204
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 32/130 (24%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
+ L D L L + N + ++P +L L S + ++PE
Sbjct: 309 IRSLCDLPPSLEEL-------NVSNNKLIELPALPPRLERL-IASFN---HLAEVPELPQ 357
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF----------------LRYLP 218
NL++L++ N LRE P + L +++ LR P
Sbjct: 358 ---NLKQLHV-EYNPLREFPDIPESVEDL-RMNSHLAEVPELPQNLKQLHVETNPLREFP 412
Query: 219 VGIGELINLR 228
+ +LR
Sbjct: 413 DIPESVEDLR 422
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLC 174
+P+L L L + N +++ P E + L+ S + ++PE
Sbjct: 352 VPELPQNLKQL----------HVEYNPLREFPDIPESVEDLRMNSH-----LAEVPELPQ 396
Query: 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDN 208
NL++L++ N LRE P + L
Sbjct: 397 ---NLKQLHV-ETNPLREFPDIPESVEDLRMNSE 426
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 37/164 (22%), Positives = 53/164 (32%), Gaps = 37/164 (22%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
K LR L L + + + F+ L L L L N + IP
Sbjct: 85 KHLRHLEILQL---SRNHIRTIEIGAFNGLANLNTL-------ELFDNRLTTIPNGAFVY 134
Query: 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDND 209
L LK L L IE +P + +L RL++ L + +G L L YL+
Sbjct: 135 LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Query: 210 DTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253
NLR + L L +L+L
Sbjct: 194 MC--------------NLREIPNL---------TPLIKLDELDL 214
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 43/339 (12%), Positives = 99/339 (29%), Gaps = 42/339 (12%)
Query: 140 NFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGI- 197
IP+ + +K L L + I + L NL+ L + + + +
Sbjct: 15 RSFTSIPSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLIL-KSSRINTIEGDAF 70
Query: 198 GKLRKLMYLD---NDDTWFLRYLPVG-IGELINLRRV----TKFVVGGGYDRARSLGSLK 249
L L +LD N L L G L +L+ + + G +L +L+
Sbjct: 71 YSLGSLEHLDLSDNH----LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 250 KLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLL 309
L + + + RR + +L EL + LR+
Sbjct: 127 TLRIGNVETFSEI---------RRIDFAGLTSLNELEIKALSLRNYQS------------ 165
Query: 310 EALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR-NCEHLPPLGKLPSLE 368
++L ++ L + + + L+++R L L++ PL
Sbjct: 166 QSLKSIRDIHHLTLH--LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223
Query: 369 SLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII 428
+ + F + ++ + + + + + +
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283
Query: 429 IMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467
+ L I L + ++++ + +
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 46/263 (17%), Positives = 75/263 (28%), Gaps = 77/263 (29%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI----PTNIEKLLHLKYLSLCGQR-- 164
V L L L L +N + + L+ L L
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLS-------ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Query: 165 EIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224
++K E L L NL L+I S N +P K+ +L+ T +R + I
Sbjct: 375 SMQKTGEILLTLKNLTSLDI-SRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI--- 429
Query: 225 INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVE 284
+L+ L+ + ++ L L E
Sbjct: 430 --------------------PQTLEVLD-VSNNNLDSFS----------LFLP---RLQE 455
Query: 285 LGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSL 341
L + ++L+ L P L + I RN VP L
Sbjct: 456 LYISRNKLKT--------------LPDASLFPVLLVMKI-----SRNQLKSVPDGIFDRL 496
Query: 342 TNLRALLLKNCR---NCEHLPPL 361
T+L+ + L +C + L
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYL 519
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 40/321 (12%), Positives = 92/321 (28%), Gaps = 49/321 (15%)
Query: 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRA 127
+ +L L A S + ++ L + S L +L + L
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 128 LKLE----VRQRWLCKNFIKKIPTNIE-KLLHLKYLSLCGQREIEKLPETLCELYNLERL 182
++ + + + + + + ++ L + L L ++R+
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 183 NITSCNHLRELPQGIGK-LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDR 241
+ + + + +P + L+ L +LD + + +
Sbjct: 316 TVEN-SKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKG--------------- 358
Query: 242 ARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQAR 301
+ SL+ L L + +R + + L KNL L + + +
Sbjct: 359 --AWPSLQTLV-LSQNHLRSMQKTGEI-------LLTLKNLTSLDISRNTFHPMPDSCQW 408
Query: 302 RRESERL------LEAL--GPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353
+ L + + P L+ L + L L+ L + +
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS--FSLF----LPRLQELYISRNK 462
Query: 354 NCEHLPPLGKLPSLESLYIEG 374
+ LP P L + I
Sbjct: 463 -LKTLPDASLFPVLLVMKISR 482
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 56/379 (14%), Positives = 99/379 (26%), Gaps = 69/379 (18%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCG-QREIEKL 169
+ L + L L + L N + I K + L L+L + +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLD---LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 170 PETLCELYNLERLN-----ITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGE 223
+ L LE + +L + + + L L + + YL I
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 224 LINLRRVTKFVVGG----GYDRARSLGSLKKLNLLRECSIRGLGG----------VSDAG 269
L V+ F + + L L+ C +
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN-CKFGQFPTLKLKSLKRLTFTSNK 336
Query: 270 EARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGR 329
+L L L + L ++ +LK L +
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGL----------SFKGCCSQSDFGTTSLKYLDL-----S 381
Query: 330 RN---VVPRNWVMSLTNLRALLLKNCR--NCEHLPPLGKLPSLESLYIEGMQSVKRVGNE 384
N + N+ + L L L ++ L +L L I
Sbjct: 382 FNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS--------HTH 432
Query: 385 FLGVESDTDGSSIIAFPKLKHLKFYDME--ELEEWDFGTAIKGEIIIMPRLSFLEISGCC 442
+ F L L+ M +E + L+FL++S C
Sbjct: 433 TRVAFNG-------IFNGLSSLEVLKMAGNSFQENFLPDIFTE----LRNLTFLDLSQ-C 480
Query: 443 KLKALPDLLLQKTT-LQKL 460
+L+ L + LQ L
Sbjct: 481 QLEQLSPTAFNSLSSLQVL 499
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 48/272 (17%), Positives = 84/272 (30%), Gaps = 81/272 (29%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
+ L L L + + ++ F+ L L L L N++ IP+ E
Sbjct: 96 RHLHHLEVLQL---GRNSIRQIEVGAFNGLASLNTL-------ELFDNWLTVIPSGAFEY 145
Query: 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDND 209
L L+ L L IE +P + +L RL++ L + +G L L YL+
Sbjct: 146 LSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204
Query: 210 DTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL-------LRECSIRGL 262
N++ + L L++L + +R S GL
Sbjct: 205 MC--------------NIKDMPNL---------TPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 263 GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELV 322
+L +L + ++ + A +L EL
Sbjct: 242 -----------------SSLKKLWVMNSQVSLIER------------NAFDGLASLVELN 272
Query: 323 IDEYRGRRN---VVPRNWVMSLTNLRALLLKN 351
+ N +P + L L L L +
Sbjct: 273 LA-----HNNLSSLPHDLFTPLRYLVELHLHH 299
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
GL L L + + + + + L L L+L I I ++
Sbjct: 149 SGLNSLEQLTL---EKCNLTSIPTEALSHLHGLIVLRLR-------HLNINAIRDYSFKR 198
Query: 152 LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLD 207
L LK L + ++ + NL L+IT +L +P + L L +L+
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLN 254
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 60/295 (20%), Positives = 89/295 (30%), Gaps = 75/295 (25%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
L L + + + S V P F+ L LR L L N +K IP +
Sbjct: 53 ASFPHLEELEL---NENIVSAVEPGAFNNLFNLRTLGLR-------SNRLKLIPLGVFTG 102
Query: 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP----QGIGKLRKLMYL 206
L +L L + + I L + +LYNL+ L + N L + G+ L +L L
Sbjct: 103 LSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQL-TL 159
Query: 207 DNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVS 266
+ + L +P L L L L R +I +
Sbjct: 160 EKCN---LTSIPTEA-----------L---------SHLHGLIVLRL-RHLNINAI---- 191
Query: 267 DAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEY 326
R ++ L L + D NL L I
Sbjct: 192 -----RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------GLNLTSLSIT-- 232
Query: 327 RGRRN---VVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEGMQ 376
VP V L LR L L + L +L L+ + + G Q
Sbjct: 233 ---HCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ 283
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 48/290 (16%), Positives = 88/290 (30%), Gaps = 69/290 (23%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
GL L L + + +L +F L L++L + N + I
Sbjct: 101 TGLSNLTKLDI---SENKIVILLDYMFQDLYNLKSL-------EVGDNDLVYISHRAFSG 150
Query: 152 LLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDND 209
L L+ L+L + +P E L L+ L L + ++ + +L +L L+
Sbjct: 151 LNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRL-RHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 210 DTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAG 269
+L + +NL + S+ L + ++R L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSL-------------SITHC-NLTAVPYLAVRHL------- 247
Query: 270 EARRAELEKKKNLVELGLH---FDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEY 326
L L L + L L+E+ +
Sbjct: 248 ----------VYLRFLNLSYNPISTIEGS---------------MLHELLRLQEIQL--V 280
Query: 327 RGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEG 374
G+ VV L LR L + + L + +LE+L ++
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 53/394 (13%), Positives = 107/394 (27%), Gaps = 63/394 (15%)
Query: 86 ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI 145
+ L L + + Y++ + L + L + + N I I
Sbjct: 143 CKLPAYFSNLTNLVHVDL---SYNYIQTITVNDLQFLRENPQVNLSLD---MSLNPIDFI 196
Query: 146 PTNIEKLLHLKYLSLCGQREIEKLPETLCE-LYNLERLN-----ITSCNHLRELPQGI-G 198
+ + L L+L G + +T + L L +L I
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256
Query: 199 KLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGG----GYDRARSLGSLKKLNLL 254
L + + T + I + L V+ + G + + L+++
Sbjct: 257 GLCDVTIDEFRLT-YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315
Query: 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGP 314
R C ++ + L L L ++
Sbjct: 316 R-CQLKQFPTLDL------------PFLKSLTLTMNKGSI--------------SFKKVA 348
Query: 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEG 374
P+L L + + + +LR L L L L+ L +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ- 407
Query: 375 MQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLS 434
+ V + AF L+ L + D+ G + + L+
Sbjct: 408 -------HSTLKRV------TEFSAFLSLEKLLYLDISYTN---TKIDFDGIFLGLTSLN 451
Query: 435 FLEISGCCKLKALPDLLLQK-TTLQKLLIGRCPI 467
L+++G + T L L + +C +
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 58/289 (20%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
+ L++L++ + + + F L L L L N++ + ++ +
Sbjct: 73 QRCVNLQALVL---TSNGINTIEEDSFSSLGSLEHL-------DLSYNYLSNLSSSWFKP 122
Query: 152 LLHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDN 208
L L +L+L G + L E L L+ L + + + ++ + L L L+
Sbjct: 123 LSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 209 DDTWFLRYLPVGI-GELINLRRVT------KFVVGGGYDRARSLGSLK-KLNLLRECSIR 260
D + L+ + N+ + ++ D S+ L+ + L
Sbjct: 182 DASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240
Query: 261 GL-GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK 319
L G +++ L KK + + + L +++ L L
Sbjct: 241 ELSTGETNS-------LIKKFTFRNVKITDESLFQ-------------VMKLLNQISGLL 280
Query: 320 ELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKN----CRNCEHLPPL 361
EL RN VP LT+L+ + L C +C + L
Sbjct: 281 ELEFS-----RNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCPRIDYL 323
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 25/151 (16%)
Query: 116 PQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPE--T 172
F L+ L+ L + + + L LK L++ I+
Sbjct: 93 LGAFSGLSSLQKL-------VAVETNLASLENFPIGHLKTLKELNV-AHNLIQSFKLPEY 144
Query: 173 LCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDND---DTWFLRYLPVGIGELINLR 228
L NLE L++ S N ++ + L ++ L+ + ++ G + I L+
Sbjct: 145 FSNLTNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203
Query: 229 RVT------KFVVGGGYDRARSLGSLKKLNL 253
+ K V G +DR L SL+K+ L
Sbjct: 204 ELALDTNQLKSVPDGIFDR---LTSLQKIWL 231
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 58/296 (19%)
Query: 95 LRGLRSLLVESDDYSW--FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
GL V D S + ++F+ L L+ L L N I KI
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA-------YNKINKIADEAFYG 312
Query: 152 LLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDND 209
L +L+ L+L + +L L + +++ NH+ + L KL LD
Sbjct: 313 LDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDL-QKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 210 DTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL------LRECSIRGLG 263
D + + + + + G L +L K+NL L E + L
Sbjct: 371 DN--------ALTTIHFIPSIPDIFLSG-----NKLVTLPKINLTANLIHLSENRLENLD 417
Query: 264 GVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVI 323
+ L + +L L L+ +R +Q P+L++L +
Sbjct: 418 ILYF--------LLRVPHLQILILNQNRFSSCSGDQ-----------TPSENPSLEQLFL 458
Query: 324 DE---YRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEG 374
E + + L++L+ L L + LPP L +L L +
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS 513
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 19/125 (15%)
Query: 112 SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN--IEKLLHLKYLSLCGQREIEKL 169
+ + + ++ L L+ N I + L++L+L I +
Sbjct: 133 TMLRDLDEGCRSRVQYLDLK-------LNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184
Query: 170 PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD---NDDTWFLRYLPVGIGELIN 226
+ L+ L++ S N L + + ++ N L + + N
Sbjct: 185 KGQVV-FAKLKTLDL-SSNKLAFMGPEFQSAAGVTWISLRNNK----LVLIEKALRFSQN 238
Query: 227 LRRVT 231
L
Sbjct: 239 LEHFD 243
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 56/381 (14%), Positives = 100/381 (26%), Gaps = 73/381 (19%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCG-QREIEKL 169
+ L + L L + L N + I K + L L+L + +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSL---DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 170 PETLCELYNLERLN-----ITSCNHLRELPQGI-GKLRKLMYLDNDDTWFLRYLPVGIGE 223
+ L LE + +L + + L L + + YL I
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 224 LINLRRVTKFVVGGGY----DRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK 279
L V+ F + + L L+ C +
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN-CKFGQFPTLKL------------ 324
Query: 280 KNLVELGLHFDRLRDGDEEQA------------RRRESERLLEALGPPPNLKELVIDEYR 327
K+L L ++ + E ++ +LK L +
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS--- 381
Query: 328 GRRN---VVPRNWVMSLTNLRALLLKNCR--NCEHLPPLGKLPSLESLYIEGMQSVKRVG 382
N + N+ + L L L ++ L +L L I
Sbjct: 382 --FNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS--------H 430
Query: 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEE--LEEWDFGTAIKGEIIIMPRLSFLEISG 440
+ F L L+ M +E + L+FL++S
Sbjct: 431 THTRVAFNGI-------FNGLSSLEVLKMAGNSFQENFLPDIFTE----LRNLTFLDLSQ 479
Query: 441 CCKLKALPDLLLQKTT-LQKL 460
C+L+ L + LQ L
Sbjct: 480 -CQLEQLSPTAFNSLSSLQVL 499
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 41/288 (14%), Positives = 92/288 (31%), Gaps = 57/288 (19%)
Query: 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKL-EVRQRWLCKNFIKKIPTNIEKLL 153
L + V+ Y++ + L + K LKL +++ N + + L
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLP 347
Query: 154 HLKYLSLCG--QREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT 211
L++L L ++ +L+ L++ S N + + L +L +LD +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 212 WFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEA 271
L + + F SL +L L++ R
Sbjct: 407 -----------NLKQMSEFSVF---------LSLRNLIYLDI-SHTHTRVAFNGI----- 440
Query: 272 RRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN 331
+L L + + ++ + NL L + +
Sbjct: 441 ----FNGLSSLEVLKMAGNSFQENFLP-----------DIFTELRNLTFLDLS-----QC 480
Query: 332 ---VVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEG 374
+ SL++L+ L + + + + +P +L SL+ +++
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 11/126 (8%)
Query: 136 WLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLCE-LYNLERLNITSCNHLREL 193
L N ++ + + L+ L L I+ + + + L +L L +T N ++ L
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-NPIQSL 91
Query: 194 PQGI-GKLRKLMYLDNDDTWFLRYLPVG-IGELINLRRVT----KFVVGGGYDRARSLGS 247
G L L L +T L L IG L L+ + + +L +
Sbjct: 92 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 248 LKKLNL 253
L+ L+L
Sbjct: 151 LEHLDL 156
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 63/386 (16%), Positives = 124/386 (32%), Gaps = 63/386 (16%)
Query: 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKL 152
L L +L++ + + F L+ L+ L + + + I L
Sbjct: 74 SLSHLSTLILT---GNPIQSLALGAFSGLSSLQKL-------VAVETNLASLENFPIGHL 123
Query: 153 LHLKYLSLCG-QREIEKLPETLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDND- 209
LK L++ + KLPE L NLE L++ S N ++ + + L ++ L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 210 --DTWFLRYLPVGIGELINLRRVT----KFVVGGGYDRARSLGSLKKLNLLRECSIRGLG 263
+ ++ G + I L ++T + + L L+ L+ LG
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV-------LG 235
Query: 264 GVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVI 323
+ G + + + L L + RL D + +++ N+ +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY------YLDDIIDLFNCLTNVSSFSL 289
Query: 324 DEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGN 383
R V ++ +L L+ P KL SL+ L
Sbjct: 290 VSVTIER-VKDFSYNFGWQHLE--LVNCKFGQ---FPTLKLKSLKRLTF----------- 332
Query: 384 EFLGVESDTDGSSIIAFPKLKHLKFYDME--ELEEWDFGTAIKGEIIIMPRLSFLEISGC 441
+ G + + L L+F D+ L + L +L++S
Sbjct: 333 ------TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS---QSDFGTTSLKYLDLSF- 382
Query: 442 CKLKALPDLLLQKTTLQKLLIGRCPI 467
+ + L L+ L +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNL 408
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 153 LHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDT 211
L L L+L I P +L L L L I N+L +P I KL +L YL T
Sbjct: 55 LDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 212 WFLRYLPVGIGELINLRR 229
+P + ++ L
Sbjct: 112 NVSGAIPDFLSQIKTLVT 129
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 19/126 (15%)
Query: 112 SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE 171
+P L L L + N + IP I KL L YL + +P+
Sbjct: 65 PYPIPSSLANLPYLNFLYI-----GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 172 TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRY------LPVGIGEL 224
L ++ L L+ + N L LP I L L+ + +P G
Sbjct: 120 FLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGIT------FDGNRISGAIPDSYGSF 172
Query: 225 INLRRV 230
L
Sbjct: 173 SKLFTS 178
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLCELY 177
L + L N ++KI + K+ L+ L + R + L +
Sbjct: 244 LLNYPGLVEVDLS-------YNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIP 295
Query: 178 NLERLNITSCNHLRELPQGIGKLRKLMYLD 207
L+ L++ S NHL + + + +L L
Sbjct: 296 TLKVLDL-SHNHLLHVERNQPQFDRLENLY 324
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 112 SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLP 170
+ P +F + L L L +N + +P I L LS+ +E++
Sbjct: 106 RYLPPHVFQNVPLLTVL-------VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE 157
Query: 171 -ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD 207
+T +L+ L + S N L + + + L + +
Sbjct: 158 DDTFQATTSLQNLQL-SSNRLTHVD--LSLIPSLFHAN 192
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 55/395 (13%), Positives = 99/395 (25%), Gaps = 99/395 (25%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLP 170
+ + L L L L N I I + L+ G + + +
Sbjct: 165 IHYLSKEDMSSLQQATNLSLN-----LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 171 ETL--CELYNLERLNIT-------------------------SCNHLRELPQGI-GKLRK 202
+ L + +L ++ +
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279
Query: 203 LMYLD---NDDTWFLRYLPVGIGELINLR-------RVTKFVVGGGYDRA-RSLGSLKKL 251
L LD L LP G+ L L+ + + + SL L
Sbjct: 280 LQELDLTATH----LSELPSGLVGLSTLKKLVLSANKFENL-----CQISASNFPSLTHL 330
Query: 252 NLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEA 311
+ ++ + R E LE +NL EL L D + S+
Sbjct: 331 S-IKGNTKR--------LELGTGCLENLENLRELDLSHDDI----------ETSDCCNLQ 371
Query: 312 LGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCR--NCEHLPPLGKLPS 366
L +L+ L + N + L L L R + P L
Sbjct: 372 LRNLSHLQSLNLS-----YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426
Query: 367 LESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGE 426
L+ L + + F L L+ +++
Sbjct: 427 LKVLNLS--------HSLLDISSEQ-------LFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 427 IIIMPRLSFLEISGCCKLKALPDLLLQKTT-LQKL 460
+ + RL L +S C L ++ + +
Sbjct: 472 LQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHV 505
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 51/264 (19%)
Query: 112 SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN---IEKLLHLKYLSLCGQREIEK 168
E+ + L LR L L + I+ + L HL+ L+L +
Sbjct: 339 LELGTGCLENLENLRELDLS-------HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 169 LPETLCELYNLERLNITSCNHLRELPQG--IGKLRKLMYLDNDDTWFLRYLPVGI-GELI 225
E E LE L++ + L+ L L L+ + L + L
Sbjct: 392 KTEAFKECPQLELLDL-AFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLP 449
Query: 226 NLRRVT------KFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK 279
L+ + + ++LG L+ L L C + + +
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL-SFCDLSSIDQHA---------FTSL 499
Query: 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM 339
K + + L +RL E +LK + ++ +++ + +
Sbjct: 500 KMMNHVDLSHNRLTSSSIE---------------ALSHLKGIYLNLASNHISIILPSLLP 544
Query: 340 SLTNLRALLLKN----CRNCEHLP 359
L+ R + L+ C C ++
Sbjct: 545 ILSQQRTINLRQNPLDC-TCSNIY 567
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 48/389 (12%), Positives = 113/389 (29%), Gaps = 84/389 (21%)
Query: 136 WLCKNFIKKI-PTNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLREL 193
N + I T +L++L +L L + I + +T + L+ L +T+ N L +
Sbjct: 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA-NPLIFM 96
Query: 194 PQGI-GKLRKLMYLD---NDDTWFLRYLPVG-IGELINLRRV-------TKFVVGGGYDR 241
+ + L +L + + + L + + + G
Sbjct: 97 AETALSGPKALKHLFFIQT----GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG--- 149
Query: 242 ARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQAR 301
LK L+ + +I L + ++ + L L+ +
Sbjct: 150 -FPTEKLKVLD-FQNNAIHYL---------SKEDMSSLQQATNLSLNLNGND-------- 190
Query: 302 RRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE---HL 358
+ + L + + ++ +L ++ + + +
Sbjct: 191 ---IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 359 PPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLK----------- 407
S+ES+ ++ + F + S+ F L+
Sbjct: 248 FEGLCEMSVESINLQ--------KHYFFNISSN-------TFHCFSGLQELDLTATHLSE 292
Query: 408 ----FYDMEELEEWD-----FGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQK-TTL 457
+ L++ F + P L+ L I G K L L+ L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 458 QKLLIGRCPILEERCRKETGEDWPNIRHI 486
++L + I C + +++ +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSL 381
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 59/233 (25%)
Query: 142 IKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLR 201
IK+I + + +L ++ + T EL +++++ + + ++ + QGI L
Sbjct: 14 IKQI-FSDDAFAETIKDNL-KKKSVTDA-VTQNELNSIDQIIA-NNSDIKSV-QGIQYLP 68
Query: 202 KLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRG 261
+ L + + ++ L +L +L L L E ++
Sbjct: 69 NVTKLFLNGN--------KLTDIKPLA---------------NLKNLGWLFL-DENKVKD 104
Query: 262 LGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKEL 321
L L+ K L L L + + D + L P L+ L
Sbjct: 105 LSS-----------LKDLKKLKSLSLEHNGISD--------------INGLVHLPQLESL 139
Query: 322 VIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEG 374
+ G + + LT L L L++ + + PL L L++LY+
Sbjct: 140 YL----GNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSK 187
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKL 152
L L L + S+ S F Q T L+ L L N + + +N L
Sbjct: 49 DKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLS-------FNGVITMSSNFLGL 100
Query: 153 LHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLDND 209
L++L ++++ E L NL L+I S H R GI L L L
Sbjct: 101 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 210 DTWFLRYLPVGI-GELINLRR 229
F I EL NL
Sbjct: 159 GNSFQENFLPDIFTELRNLTF 179
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 56/244 (22%)
Query: 136 WLCKNFIKKIPTNI-EKLLHLKYLSL--CGQREIEKLPETLCELYNLERLNITSCNHLRE 192
L N ++ +P + +KL L LSL G ++ +L+ L++ S N +
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVIT 92
Query: 193 LPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252
+ L +L +LD + + + F SL +L L+
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-----------F---------LSLRNLIYLD 132
Query: 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL 312
+ R +L L + + ++ +
Sbjct: 133 I-SHTHTRVA---------FNGIFNGLSSLEVLKMAGNSFQENFLP-----------DIF 171
Query: 313 GPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSL 367
NL L + + + SL++L+ L + + L L SL
Sbjct: 172 TELRNLTFLDLS-----QCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSL 225
Query: 368 ESLY 371
+ L
Sbjct: 226 QVLD 229
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN--IEKLLHLKYLSLCGQREIEKLPET 172
+ F L L L + +K++ L +L YL +
Sbjct: 93 MSSNFLGLEQLEHL-------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG 144
Query: 173 LCE-LYNLERLNITSCNHLRELPQGI-GKLRKLMYLD 207
+ L +LE L + + I +LR L +LD
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
L L SLL+ ++ + + + F + LR L L N + + +
Sbjct: 61 TRLTNLHSLLL---SHNHLNFISSEAFVPVPNLRYL-------DLSSNHLHTLDEFLFSD 110
Query: 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGI----GKLRKLMYL 206
L L+ L L I + ++ L++L + S N + P + KL KLM L
Sbjct: 111 LQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYL-SQNQISRFPVELIKDGNKLPKLMLL 168
Query: 207 DNDDTWFLRYLPVG 220
D L+ LP+
Sbjct: 169 DLSSN-KLKKLPLT 181
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 96 RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLH 154
RGL L + DY+ + +FD LT L L L Q + +P + + L
Sbjct: 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-------LASLPLGVFDHLTQ 108
Query: 155 LKYLSLCGQREIEKLPETLCE-LYNLERLNITSCNHLRELPQGI-GKLRKLMYLDNDDTW 212
L L L G +++ LP + + L L+ L + + N L+ +P G KL L L
Sbjct: 109 LDKLYL-GGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 213 FLRYLPVG 220
L+ +P G
Sbjct: 167 -LQSVPHG 173
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 82 ASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF 141
ASVP I N + L + +++ P +FD L L+ L L Q
Sbjct: 32 ASVPAGIPTNAQILYL---------HDNQITKLEPGVFDSLINLKELYLGSNQ------- 75
Query: 142 IKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLCE-LYNLERLNITSCNHLRELPQGIGK 199
+ +P + + L L L L G ++ LP + + L +L+ L + CN L ELP+GI +
Sbjct: 76 LGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFM-CCNKLTELPRGIER 133
Query: 200 LRKLMYLDNDDTWFLRYLPVG 220
L L +L D L+ +P G
Sbjct: 134 LTHLTHLALDQNQ-LKSIPHG 153
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 121 KLTCLRALK--LEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
LT L L+ L V L N ++ +P + L L+ L +E + + L
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPR 509
Query: 179 LERLNITSCNHLRELP--QGIGKLRKLMYLD 207
L+ L + N L++ Q + +L+ L+
Sbjct: 510 LQELLL-CNNRLQQSAAIQPLVSCPRLVLLN 539
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLCELY 177
L + L N ++KI + K+ L+ L + R + L +
Sbjct: 250 LLNYPGLVEVDLS-------YNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIP 301
Query: 178 NLERLNITSCNHLRELPQGIGKLRKLMYLD 207
L+ L++ S NHL + + + +L L
Sbjct: 302 TLKVLDL-SHNHLLHVERNQPQFDRLENLY 330
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 112 SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLP 170
+ P +F + L L L +N + +P I L LS+ +E++
Sbjct: 112 RYLPPHVFQNVPLLTVL-------VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE 163
Query: 171 -ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD 207
+T +L+ L + S N L + + + L + +
Sbjct: 164 DDTFQATTSLQNLQL-SSNRLTHVD--LSLIPSLFHAN 198
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 125 LRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLN 183
L E WL KN I++I + L L+L +E+LP L+
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 184 ITSCNHLRELPQGI-GKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVT 231
I S + LP L+KL + L+ LP + +L+ L +
Sbjct: 209 I-SRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT-LEKLVALMEAS 252
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 39/252 (15%), Positives = 75/252 (29%), Gaps = 49/252 (19%)
Query: 136 WLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLREL 193
++ I L+ + + +E + + L L + I N+L +
Sbjct: 36 RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 194 PQGI-GKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252
L L YL +T +++LP I+ + + ++
Sbjct: 96 NPEAFQNLPNLQYLLISNT-GIKHLPDVH--KIHSLQKVLL----------DIQDNINIH 142
Query: 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLL--- 309
+ S GL V L L+ + +++ + + L
Sbjct: 143 TIERNSFVGLSF----------------ESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 310 ---------EALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP 360
+ L I R R + +P + +L LRA N + LP
Sbjct: 187 NNNLEELPNDVFHGASGPVILDIS--RTRIHSLPSYGLENLKKLRARSTYNLKK---LPT 241
Query: 361 LGKLPSLESLYI 372
L KL +L +
Sbjct: 242 LEKLVALMEASL 253
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLC-EL 176
+LT L L L Q ++ +P + +KL +LK L + +++ LP+ + +L
Sbjct: 81 LKELTNLTYLILTGNQ-------LQSLPNGVFDKLTNLKELV-LVENQLQSLPDGVFDKL 132
Query: 177 YNLERLNITSCNHLRELPQGI-GKLRKLMYLD---NDDTWFLRYLPVGI-GELINLRRVT 231
NL LN+ N L+ LP+G+ KL L LD N L+ LP G+ +L L+ +
Sbjct: 133 TNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQ----LQSLPEGVFDKLTQLKDLR 187
Query: 232 ------KFVVGGGYDRARSLGSLKKLNL 253
K V G +DR L SL+ + L
Sbjct: 188 LYQNQLKSVPDGVFDR---LTSLQYIWL 212
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KIPTNIEKLLHLKYLSLCGQREIEKL 169
S +P L+ LR LKL N ++ +IP + + L+ L L ++
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLW-------LNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 170 PETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRY------LPVGIG 222
P L NL +++++ N L E+P+ IG+L L L L +P +G
Sbjct: 483 PSGLSNCTNLNWISLSN-NRLTGEIPKWIGRLENLAILK------LSNNSFSGNIPAELG 535
Query: 223 ELINLRRV 230
+ +L +
Sbjct: 536 DCRSLIWL 543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 100 SLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYL- 158
+ + F + + ++L+ + R + + + +L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR------VYGGHTSPTFDNNGSMMFLD 638
Query: 159 ----SLCGQREIEKLPETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLD 207
L G I P+ + + L LN+ N + +P +G LR L LD
Sbjct: 639 MSYNMLSG--YI---PKEIGSMPYLFILNL-GHNDISGSIPDEVGDLRGLNILD 686
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KIPTNIEKLLHLKYLSLCGQREIEKL 169
+PQ + L L L+ N + +IP+ + +L ++SL R ++
Sbjct: 454 LEGEIPQELMYVKTLETLILD-------FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 170 PETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228
P+ + L NL L +++ N +P +G R L++LD + F +P + +
Sbjct: 507 PKWIGRLENLAILKLSN-NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 229 RVTKFVVGGGYDRARSLGSLKKLNL 253
G Y ++ G K+ +
Sbjct: 566 AANFI-AGKRYVYIKNDGMKKECHG 589
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 29/148 (19%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLCE-L 176
F +L L L W+ N ++ +P + ++L++L L L + +++ LP + + L
Sbjct: 81 FKELKNLETL-------WVTDNKLQALPIGVFDQLVNLAELRL-DRNQLKSLPPRVFDSL 132
Query: 177 YNLERLNITSCNHLRELPQGI----GKLRKLMYLDNDDTWFLRYLPVGI-GELINLRRVT 231
L L++ N L+ LP+G+ L++L L N+ L+ +P G +L L+ +
Sbjct: 133 TKLTYLSL-GYNELQSLPKGVFDKLTSLKEL-RLYNNQ---LKRVPEGAFDKLTELKTLK 187
Query: 232 ------KFVVGGGYDRARSLGSLKKLNL 253
K V G +D L LK L L
Sbjct: 188 LDNNQLKRVPEGAFDS---LEKLKMLQL 212
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 39/144 (27%)
Query: 116 PQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPETLC 174
+ F +LT LR L +L N ++ +P I ++L +L+ L +++ LP +
Sbjct: 54 SKAFHRLTKLRLL-------YLNDNKLQTLPAGIFKELKNLETLW-VTDNKLQALPIGVF 105
Query: 175 E-LYNLERLNITSCNHLRELPQGI-GKLRKLMYLD---NDDTWFLRYLPVGIGELINLRR 229
+ L NL L + N L+ LP + L KL YL N+ L+ LP G+
Sbjct: 106 DQLVNLAELRL-DRNQLKSLPPRVFDSLTKLTYLSLGYNE----LQSLPKGV-------- 152
Query: 230 VTKFVVGGGYDRARSLGSLKKLNL 253
F L SLK+L L
Sbjct: 153 ---F---------DKLTSLKELRL 164
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EKL 152
GL L +L + D E+ P LF L L+ L +L N ++ +P + L
Sbjct: 103 GLGRLHTLHL---DRCGLQELGPGLFRGLAALQYL-------YLQDNALQALPDDTFRDL 152
Query: 153 LHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLD--- 207
+L +L L G R I +PE L++L+RL + N + + L +LM L
Sbjct: 153 GNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 208 NDDTWFLRYLPVGI-GELINLRRVT 231
N+ L LP L L+ +
Sbjct: 211 NN----LSALPTEALAPLRALQYLR 231
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
F++ + A + E + I+K+ + L K+L+L IEK+ +L + N
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKI-SSLSGMEN 71
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLD 207
L L++ N ++++ L L
Sbjct: 72 LRILSL-GRNLIKKIENLDAVADTLEELW 99
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 136 WLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ 195
+ I L +L+ L + G+ L L +L L+I+ H +
Sbjct: 72 TINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 196 GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVTKFVVGGGYDRARSLGSL 248
I L K+ +D + + + L L+ V + R +
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY---------RGIEDF 180
Query: 249 KKLNLL 254
KLN L
Sbjct: 181 PKLNQL 186
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 59/233 (25%)
Query: 142 IKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLR 201
I I L + ++ G+ + T +L + L+ + + G+ L
Sbjct: 9 INVI-FPDPALANAIKIAA-GKSNVTDT-VTQADLDGITTLSA-FGTGVTTIE-GVQYLN 63
Query: 202 KLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRG 261
L+ L+ D I +L L+ +TK + +L L ++
Sbjct: 64 NLIGLELKDN--------QITDLAPLKNLTK---------------ITELEL-SGNPLKN 99
Query: 262 LGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKEL 321
+ + +++ L L ++ D + L NL+ L
Sbjct: 100 VSA-----------IAGLQSIKTLDLTSTQITD--------------VTPLAGLSNLQVL 134
Query: 322 VIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEG 374
+D + N+ P + LTNL+ L + N + L PL L L +L +
Sbjct: 135 YLDLNQIT-NISP---LAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADD 182
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 60/364 (16%), Positives = 97/364 (26%), Gaps = 91/364 (25%)
Query: 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178
++L L +L + I + IEKL L L I L L + N
Sbjct: 38 EEQLATLTSLDCH-------NSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTN 86
Query: 179 LERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR-------RVT 231
L L N L L + L KL YL+ D L L + + L +T
Sbjct: 87 LTYLAC-DSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT 140
Query: 232 KFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR 291
+ V L +L+ I L ++ + L L F++
Sbjct: 141 EIDVSH-------NTQLTELDCHLNKKITKL------------DVTPQTQLTTLDCSFNK 181
Query: 292 LRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSL-----TNLRA 346
+ + D + L L D N + L L
Sbjct: 182 ITELD---------------VSQNKLLNRLNCDT----------NNITKLDLNQNIQLTF 216
Query: 347 LLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHL 406
L + + + + L L N + + KL L
Sbjct: 217 LDCSSNKL-TEID-VTPLTQLTYFDCS--------VNPLTEL-------DVSTLSKLTTL 259
Query: 407 KFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCP 466
+L E D + ++ L L Q + +L + + P
Sbjct: 260 HCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318
Query: 467 ILEE 470
L
Sbjct: 319 KLVY 322
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 60/235 (25%)
Query: 140 NFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199
I ++ L + +L G++ + L + EL ++ N ++++ L G+
Sbjct: 7 TPINQV-FPDPGLANAVKQNL-GKQSVTDL-VSQKELSGVQNFNG-DNSNIQSL-AGMQF 61
Query: 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSI 259
L L I +L L+ L L++L++ +
Sbjct: 62 FTNLKELHLSHN--------QISDLSPLK---------------DLTKLEELSV-NRNRL 97
Query: 260 RGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK 319
+ L G+ L L L + LRD ++L NL+
Sbjct: 98 KNLNGIP------------SACLSRLFLDNNELRD--------------TDSLIHLKNLE 131
Query: 320 ELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEG 374
L I + + ++V + L+ L L L + L +L + + + G
Sbjct: 132 ILSIRNNKLK-SIVM---LGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTG 181
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 60/252 (23%)
Query: 136 WLCKNFIKKI-PTNIEKLLHLKYLSL--CGQREIEKLPETLCELYNLERLNITSCNHLRE 192
L N ++++ N + L L + ++E PE +L L+ LN+ N L +
Sbjct: 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQH-NELSQ 87
Query: 193 LPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKL 251
L L L +++++ +L L
Sbjct: 88 LSDKTFAFCTNLTELHLMSN--------------SIQKIKNNPFVK-------QKNLITL 126
Query: 252 NLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEA 311
+ L + + + +NL EL L ++++ E
Sbjct: 127 D-LSHNGLSST---------KLGTQVQLENLQELLLSNNKIQALKSE----------ELD 166
Query: 312 LGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCR----NCEHLPPLGKL 364
+ +LK+L + N ++ L L L N + E L
Sbjct: 167 IFANSSLKKLELS-----SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221
Query: 365 PSLESLYIEGMQ 376
S+ +L + Q
Sbjct: 222 TSIRNLSLSNSQ 233
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 57/412 (13%), Positives = 118/412 (28%), Gaps = 76/412 (18%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALK-LEVRQRWLCKNFIKKIPTNI-- 149
+ L L + + L + +++ L L + +
Sbjct: 192 HAIGRLFGLFL---NNVQLGPSLTEKLCLELANTSIRNL-----SLSNSQLSTTSNTTFL 243
Query: 150 -EKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLD 207
K +L L L + + ++ L LE + N + L + YL+
Sbjct: 244 GLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 208 NDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSD 267
R L +L ++ F L L+ LN + + I G+
Sbjct: 303 -----LKRSFTKQSISLASLPKIDDFSFQW-------LKCLEHLN-MEDNDIPGIK---- 345
Query: 268 AGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYR 327
NL L L + +L L L +
Sbjct: 346 -----SNMFTGLINLKYLSLSNSFTSLRT-------LTNETFVSL-AHSPLHILNL---- 388
Query: 328 GRRN---VVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEGMQSVKRVG 382
+N + + L +L L L + L L ++ +Y+
Sbjct: 389 -TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS--------Y 439
Query: 383 NEFLGVESDTDGSSIIAFPKLKHLKFYD--MEELEEWDFGTAIKGEIIIMPRLSFLEISG 440
N++L + + S P L+ L ++ ++ + L+ L++S
Sbjct: 440 NKYLQLTRN----SFALVPSLQRLMLRRVALKNVDS------SPSPFQPLRNLTILDLSN 489
Query: 441 CCKLKALPDLLLQK-TTLQKLLIGRCPILEERCRKETGEDWPNIRHIPELYI 491
+ + D +L+ L+ L + + G ++ + L+I
Sbjct: 490 -NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 145 IPTNIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGI-GKLRK 202
++ +L L + Q+ ++ L L L L L I + LR + +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPR 81
Query: 203 LMYLD 207
L L+
Sbjct: 82 LSRLN 86
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 93 KGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI-EK 151
L L + + +++ F LT L L L +NF+ I + + E
Sbjct: 296 SHFTDLEQLTL---AQNEINKIDDNAFWGLTHLLKL-------NLSQNFLGSIDSRMFEN 345
Query: 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGI-GKLRKLMYLD 207
L L+ L L I L + + L NL+ L + + N L+ +P GI +L L +
Sbjct: 346 LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIW 401
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 37/219 (16%)
Query: 51 LTVEVHSGEELAINSFGEKKILHLL----LTLHRGASVPISIWGNVKGLRGLRSLLVESD 106
L++ + +I + T+ V + + L
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD--F---- 331
Query: 107 DYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIE---KLLHLKYLSLCGQ 163
+ ++ + + LT L L L N +K++ E ++ L+ L +
Sbjct: 332 SNNLLTDTVFENCGHLTELETL-------ILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
Query: 164 REIEKLPETLCE-LYNLERLNITSCNHLRELPQGI--GKLRKLMYLDNDDTWFLRYLPVG 220
+ C +L LN+ S N L + +++ L L ++ ++ +P
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNM-SSNILTDTIFRCLPPRIKVL-DLHSNK---IKSIPKQ 439
Query: 221 IGELINLRRVT------KFVVGGGYDRARSLGSLKKLNL 253
+ +L L+ + K V G +D L SL+K+ L
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFD---RLTSLQKIWL 475
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 34/127 (26%)
Query: 107 DYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQR-- 164
+ F++ + Q L L+ L L +N +K ++ L
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTL-------ILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 165 --------EIEKLPETLCELY----------------NLERLNITSCNHLRELPQGIGKL 200
E++ L ++ L++ N + +P+ + L
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL-HNNRIMSIPKDVTHL 472
Query: 201 RKLMYLD 207
+ L L+
Sbjct: 473 QALQELN 479
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 14/131 (10%)
Query: 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP--TNIEK 151
L + + + + + + P +L L+ L + +K P T +
Sbjct: 78 NLSKVTHIEIR--NTRNLTYIDPDALKELPLLKFL-------GIFNTGLKMFPDLTKVYS 128
Query: 152 LLHLKYLSLCGQREIEKLPE-TLCELYN-LERLNITSCNHLRELPQGIGKLRKLMYLDND 209
L + + +P L N L + + N + KL + +
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLN 187
Query: 210 DTWFLRYLPVG 220
+L +
Sbjct: 188 KNKYLTVIDKD 198
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 136 WLCKNFIKKIPTNI-EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLREL 193
L + ++ IP++ L ++ + + +++L + L + + I + +L +
Sbjct: 37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96
Query: 194 PQGI-GKLRKLMYLD 207
+L L +L
Sbjct: 97 DPDALKELPLLKFLG 111
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.97 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.96 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.94 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.94 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.94 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.93 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.93 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.91 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.91 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.91 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.91 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.9 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.89 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.87 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.85 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.85 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.85 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.85 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.84 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.84 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.83 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.83 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.83 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.82 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.81 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.81 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.8 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.79 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.79 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.78 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.77 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.76 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.74 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.72 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.72 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.72 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.71 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.71 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.71 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.7 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.69 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.69 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.69 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.69 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.69 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.68 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.66 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.65 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.65 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.62 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.59 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.58 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.58 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.56 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.55 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.55 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.54 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.53 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.52 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.52 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.51 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.49 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.49 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.49 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.48 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.47 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.47 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.46 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.46 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.46 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.45 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.45 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.42 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.42 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.41 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.4 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.39 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.38 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.35 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.35 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.34 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.33 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.32 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.29 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.29 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.28 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.27 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.26 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.19 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.19 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.13 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.08 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.04 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.02 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.98 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.98 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.96 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.94 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.7 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.68 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.67 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.66 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.62 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.56 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.54 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.51 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.43 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.35 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.35 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.15 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.11 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.04 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.97 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.83 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.67 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.25 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.67 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.64 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 92.11 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 90.93 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=295.11 Aligned_cols=389 Identities=20% Similarity=0.192 Sum_probs=265.2
Q ss_pred cceEEEEEEeecCC-CcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccc-ccC
Q 011151 69 KKILHLLLTLHRGA-SVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~l~ 146 (492)
++++.+++.+|.+. .+|..+. ..+++|+.|++++|. +.+..|..|+.+++|++|+++ ++.+. .+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~---~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-------~n~l~~~ip 335 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALS-------SNNFSGELP 335 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSC---TTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECC-------SSEEEEECC
T ss_pred CCCCEEECcCCccCCccCHHHH---hhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECC-------CCcccCcCC
Confidence 46667777666655 3454443 124888888888887 776678878888888888888 77765 677
Q ss_pred ch-hhccCcCCEEEccCCCCccccchhhhcCC-CCCeeecCcccccccccccccC--CCCCcEEecCCCccccccccccc
Q 011151 147 TN-IEKLLHLKYLSLCGQREIEKLPETLCELY-NLERLNITSCNHLRELPQGIGK--LRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 147 ~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~--l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
.. +.++++|++|++++|.+.+.+|..+.++. +|++|++++|.+...+|..+.. +++|++|++++|.+.+.+|..+.
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 65 78888888888888884457888888877 8888888888866667766665 77889999998888778888888
Q ss_pred ccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh
Q 011151 223 ELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302 (492)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 302 (492)
.+++|+.|++..+..... ....+..++.|+.+.+....-.. .....+..+++|+.|++++|.+++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~-------- 480 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGT---IPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTG-------- 480 (768)
T ss_dssp GCTTCCEEECCSSEEESC---CCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCS--------
T ss_pred cCCCCCEEECcCCcccCc---ccHHHhcCCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccC--------
Confidence 899999998888876632 33445556666666665543221 111456788899999999888642
Q ss_pred hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceee
Q 011151 303 RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRV 381 (492)
Q Consensus 303 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~ 381 (492)
..+..+..+++|++|++++|.+... + |.++..+++|++|++++|.+.+.+|. ++.+++|+.|++++|.....+
T Consensus 481 ----~~p~~l~~l~~L~~L~L~~N~l~~~-~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 481 ----EIPSGLSNCTNLNWISLSNNRLTGE-I-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp ----CCCGGGGGCTTCCEEECCSSCCCSC-C-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred ----cCCHHHhcCCCCCEEEccCCccCCc-C-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 3455677788999999999988752 4 88888899999999999988877776 788889999999888754444
Q ss_pred cccccCCcCC----------------------------------------------------------CCCCcccccccc
Q 011151 382 GNEFLGVESD----------------------------------------------------------TDGSSIIAFPKL 403 (492)
Q Consensus 382 ~~~~~~~~~~----------------------------------------------------------~~~~~~~~l~~L 403 (492)
+..+...... ........+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 4333211000 001112234455
Q ss_pred cceeccCcc------------------cccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCC
Q 011151 404 KHLKFYDME------------------ELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 404 ~~L~l~~~~------------------~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
+.|+++++. ++..+.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|++|++++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 555554432 11123355678888889999999999997766688988999999999999987
Q ss_pred Cchh---------------------------hhhhcCCCCCCccCCCCCcccc
Q 011151 466 PILE---------------------------ERCRKETGEDWPNIRHIPELYI 491 (492)
Q Consensus 466 ~~l~---------------------------~~~~~~~~~~~~~i~~~~~~~~ 491 (492)
+.-. ..|....+++|++|+|+|+++-
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 5210 1467788999999999998764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=275.79 Aligned_cols=370 Identities=14% Similarity=0.140 Sum_probs=274.5
Q ss_pred ccceEEEEEEeecCCC------------------cccccccCcc--CCCCceEEEeccCCccccccccchhhccCCeeeE
Q 011151 68 EKKILHLLLTLHRGAS------------------VPISIWGNVK--GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRA 127 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~------------------~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 127 (492)
.++++.+++++|.+.. +|. .+. ++++|+.|++++|. +.+.+|..++.+++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCE
Confidence 3688999999998876 443 334 78999999999988 77778888999999999
Q ss_pred Eecchhhhhhcccc-cc--ccCchhhcc------CcCCEEEccCCCCccccch--hhhcCCCCCeeecCccccccccccc
Q 011151 128 LKLEVRQRWLCKNF-IK--KIPTNIEKL------LHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQG 196 (492)
Q Consensus 128 L~L~~~~~~~~~~~-~~--~l~~~~~~l------~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~ 196 (492)
|+++ ++. +. .+|..+.++ ++|++|++++|. +..+|. .++++++|++|++++|.+...+| .
T Consensus 278 L~Ls-------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 278 INVA-------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp EECT-------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred EECc-------CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 9999 776 65 488877776 899999999999 668988 89999999999999998555888 7
Q ss_pred ccCCCCCcEEecCCCccccccccccccccc-ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhh
Q 011151 197 IGKLRKLMYLDNDDTWFLRYLPVGIGELIN-LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAE 275 (492)
Q Consensus 197 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 275 (492)
++.+++|++|++++|.+. .+|..+..+++ |+.|+++.+.... ++..+.. ..+..|+.+.+....-.... ...
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~-~~l~~L~~L~Ls~N~l~~~~----p~~ 421 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA-KSVSVMSAIDFSYNEIGSVD----GKN 421 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCT-TCSSCEEEEECCSSCTTTTT----TCS
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhh-cccCccCEEECcCCcCCCcc----hhh
Confidence 888999999999999775 78888888988 9999998887653 2322221 11225555555543221110 012
Q ss_pred hc-------ccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhcc-------
Q 011151 276 LE-------KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSL------- 341 (492)
Q Consensus 276 l~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l------- 341 (492)
+. .+++|+.|++++|.++..+. ..+..+++|++|++++|.+.. +|+..+...
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------------~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPK------------ELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNT 487 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCT------------HHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTG
T ss_pred hcccccccccCCCCCEEECcCCccCcCCH------------HHHccCCCCCEEECCCCCCCC--cCHHHhcccccccccc
Confidence 33 56789999999998753321 123357899999999999886 744444333
Q ss_pred ccccEEEEecccCCCcCCC-CC--CCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccc
Q 011151 342 TNLRALLLKNCRNCEHLPP-LG--KLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWD 418 (492)
Q Consensus 342 ~~L~~L~L~~~~~~~~~~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 418 (492)
++|+.|++++|.+. .+|. +. .+++|++|++++|. ++.++.. +..+++|+.|+++++..+....
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTTCCB
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccccCc
Confidence 38999999999877 4554 55 89999999999987 4334433 2378999999999887777777
Q ss_pred cCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCchh----hhhhc-------CCCCCCccCCCCC
Q 011151 419 FGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPILE----ERCRK-------ETGEDWPNIRHIP 487 (492)
Q Consensus 419 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~----~~~~~-------~~~~~~~~i~~~~ 487 (492)
+.+.+|..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|+... ..+.. -....+..|..+|
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred ccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 788889999999999999999965 488998765 899999999997422 22211 1223445666777
Q ss_pred cccc
Q 011151 488 ELYI 491 (492)
Q Consensus 488 ~~~~ 491 (492)
.+++
T Consensus 631 ~L~~ 634 (636)
T 4eco_A 631 ALDI 634 (636)
T ss_dssp GGCC
T ss_pred cccc
Confidence 7765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=273.75 Aligned_cols=349 Identities=15% Similarity=0.138 Sum_probs=265.3
Q ss_pred ccceEEEEEEeecCCC------------------cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEe
Q 011151 68 EKKILHLLLTLHRGAS------------------VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALK 129 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 129 (492)
.++++.|++++|.+.. +|..+. +.++++|+.|++++|. +.+.+|..|..+++|+.|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEE
Confidence 3689999999999886 444321 1278999999999998 7777888899999999999
Q ss_pred cchhhhhhcccc-cc--ccCchhhccC-------cCCEEEccCCCCccccch--hhhcCCCCCeeecCcccccccccccc
Q 011151 130 LEVRQRWLCKNF-IK--KIPTNIEKLL-------HLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQGI 197 (492)
Q Consensus 130 L~~~~~~~~~~~-~~--~l~~~~~~l~-------~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~ 197 (492)
++ ++. +. .+|..+.++. +|++|++++|. +..+|. .++++++|+.|++++|. +..+| .+
T Consensus 522 Ls-------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~ 591 (876)
T 4ecn_A 522 IA-------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AF 591 (876)
T ss_dssp CT-------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CC
T ss_pred Cc-------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hh
Confidence 99 776 65 4787777666 99999999999 669998 89999999999999999 45888 78
Q ss_pred cCCCCCcEEecCCCccccccccccccccc-ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhh
Q 011151 198 GKLRKLMYLDNDDTWFLRYLPVGIGELIN-LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAEL 276 (492)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l 276 (492)
+.+++|++|++++|.+. .+|..+..+++ |+.|+++.+.... ++..+... ....|+.+.+....-.... ..+...+
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~-~~~~L~~L~Ls~N~l~g~i-p~l~~~l 667 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK-SVYVMGSVDFSYNKIGSEG-RNISCSM 667 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT-CSSCEEEEECCSSCTTTTS-SSCSSCT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhhcc-ccCCCCEEECcCCcCCCcc-ccchhhh
Confidence 99999999999999886 88888999998 9999999887653 23222221 1122555555443221100 0000111
Q ss_pred c--ccCCcceEecccccCCCCchhhHhhhhHHHHhhhc-CCCCCccEEEEeecCCCccccCchhhh-------ccccccE
Q 011151 277 E--KKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL-GPPPNLKELVIDEYRGRRNVVPRNWVM-------SLTNLRA 346 (492)
Q Consensus 277 ~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~l~~~~~~-------~l~~L~~ 346 (492)
. .+++|+.|++++|.++.. +..+ ..+++|+.|++++|.+.. +|+..+. ++++|+.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~l-------------p~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKF-------------PTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSC-------------CHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCE
T ss_pred ccccCCCcCEEEccCCcCCcc-------------CHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccE
Confidence 1 345899999999997532 2222 367899999999999886 7333332 2349999
Q ss_pred EEEecccCCCcCCC-CC--CCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccc
Q 011151 347 LLLKNCRNCEHLPP-LG--KLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAI 423 (492)
Q Consensus 347 L~L~~~~~~~~~~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 423 (492)
|+|++|.+. .+|. +. .+++|+.|+|++|. +..++.. +..+++|+.|++++++.+....+.+.+
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred EECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccC
Confidence 999999777 4554 55 89999999999987 4434433 237899999999998877777777888
Q ss_pred cccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 424 KGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 424 ~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|..+..+++|+.|+|++|.. +.+|..+. ++|+.|++++|+.
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 99999999999999999755 89998765 7999999999985
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=276.24 Aligned_cols=299 Identities=21% Similarity=0.178 Sum_probs=194.4
Q ss_pred ccceEEEEEEeecCCC-cccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccc-cc
Q 011151 68 EKKILHLLLTLHRGAS-VPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK-KI 145 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~l 145 (492)
.++++.+++.+|.+.. .+..+. ++++|+.|++++|. +.+..|.. .+++|++|+++ ++.+. .+
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~----~l~~L~~L~Ls~n~---l~~~~~~~--~l~~L~~L~L~-------~n~l~~~i 285 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAIS----TCTELKLLNISSNQ---FVGPIPPL--PLKSLQYLSLA-------ENKFTGEI 285 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTT----TCSSCCEEECCSSC---CEESCCCC--CCTTCCEEECC-------SSEEEESC
T ss_pred CCCCCEEECcCCcCCCcccHHHh----cCCCCCEEECCCCc---ccCccCcc--ccCCCCEEECc-------CCccCCcc
Confidence 3688999999998874 444454 88889999998887 55545542 66777777777 55554 56
Q ss_pred Cchhhcc-CcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccc
Q 011151 146 PTNIEKL-LHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGE 223 (492)
Q Consensus 146 ~~~~~~l-~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~ 223 (492)
|..+.+. ++|++|++++|.+.+.+|..++++++|++|++++|.+...+|.. +..+++|++|++++|.+.+.+|..+..
T Consensus 286 p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 6555443 67777777777644466666677777777777777644466654 666677777777776665566666555
Q ss_pred cc-cccccceEEeecccCCC-----------------------cCccccccccccCCceEecCCCCCChhhhhHhhhccc
Q 011151 224 LI-NLRRVTKFVVGGGYDRA-----------------------RSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK 279 (492)
Q Consensus 224 l~-~L~~L~l~~~~~~~~~~-----------------------~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 279 (492)
++ +|+.|+++.+......+ .....+..++.|+.+++....-. ......+..+
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l 441 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS----GTIPSSLGSL 441 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE----SCCCGGGGGC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc----CcccHHHhcC
Confidence 54 55555555444321111 11222334444554444332110 0111346667
Q ss_pred CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC
Q 011151 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP 359 (492)
Q Consensus 280 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~ 359 (492)
++|+.|++++|.+. ...+..+..+++|++|++++|.+... + |.++..+++|++|++++|.+.+.+|
T Consensus 442 ~~L~~L~L~~n~l~------------~~~p~~~~~l~~L~~L~L~~N~l~~~-~-p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 442 SKLRDLKLWLNMLE------------GEIPQELMYVKTLETLILDFNDLTGE-I-PSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp TTCCEEECCSSCCC------------SCCCGGGGGCTTCCEEECCSSCCCSC-C-CGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCCEEECCCCccc------------CcCCHHHcCCCCceEEEecCCcccCc-C-CHHHhcCCCCCEEEccCCccCCcCC
Confidence 77777777777743 23455666788899999998888752 4 7888889999999999998887777
Q ss_pred C-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 360 P-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 360 ~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
. ++.+++|++|++++|.....++..+ ..+++|+.|++++|+
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l------------~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAEL------------GDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGG------------GGCTTCCEEECCSSE
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHH------------cCCCCCCEEECCCCc
Confidence 6 7888999999999988554555433 267778888777653
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=265.87 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=112.8
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
.++++++++++.+..++. .+ .++++|++|++++|. +.+..|.+|..+++|++|+++ ++.+..+ |
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~p 97 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSF----SNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILT-------GNPIQSFSP 97 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCCCCT
T ss_pred CCcCEEECCCCCcCEeChhhc----cCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECC-------CCcccccCh
Confidence 689999999998887554 34 388999999999987 777678888999999999999 8888777 6
Q ss_pred chhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
..+.++++|++|++++|. +..++ ..++++++|++|++++|.+.. .+|..++++++|++|++++|.+....|..+.
T Consensus 98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 778899999999999998 66555 568889999999999998544 5788899999999999998877554444443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=249.50 Aligned_cols=363 Identities=16% Similarity=0.108 Sum_probs=250.3
Q ss_pred cceEEEEEEeecCCCc-ccccccCccCCCCceEEEeccCCcccccc-ccchhhccCCeeeEEecchhhhhhcccccccc-
Q 011151 69 KKILHLLLTLHRGASV-PISIWGNVKGLRGLRSLLVESDDYSWFSE-VLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI- 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l- 145 (492)
+++++++++++.+..+ +..+. ++++|+.|++++|. +.+ ..+..|..+++|++|+++ ++.+..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~---~~~~i~~~~~~~l~~L~~L~Ls-------~n~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQT---PGLVIRNNTFRGLSSLIILKLD-------YNQFLQLE 95 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS----SCTTCCEEECCCCS---TTCEECTTTTTTCTTCCEEECT-------TCTTCEEC
T ss_pred CccCEEEecCCccCcCChhHhc----cCccccEEECcCCc---ccceECcccccccccCCEEeCC-------CCccCccC
Confidence 6889999999888764 34444 88999999999887 543 335668889999999999 7777766
Q ss_pred CchhhccCcCCEEEccCCCCccccchh--hhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCccccccccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLPET--LCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
|..+.++++|++|++++|.+.+.+|.. +..+++|++|++++|.+....|.. +.++++|++|++++|.+....+..+.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 667888999999999999833345554 788899999999999854454655 78899999999999988777776666
Q ss_pred cc--ccccccceEEeecccCCCcCc-----cccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCC
Q 011151 223 EL--INLRRVTKFVVGGGYDRARSL-----GSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDG 295 (492)
Q Consensus 223 ~l--~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 295 (492)
.+ .+|+.|++..+.........+ ..+..++.|+.+++....-.......+ ......++|+.++++++.+.+.
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hccccccceeeEeecccccccc
Confidence 55 567777776665543111111 112233456666665443221111111 1122337788888877653221
Q ss_pred chhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccc
Q 011151 296 DEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEG 374 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~ 374 (492)
......-.........-...++|++|++++|.+.. +++.++..+++|+.|++++|.+.+..+. +..+++|++|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 11000000000000000123689999999999887 5588899999999999999988877664 88999999999999
Q ss_pred cccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCc-ccCC
Q 011151 375 MQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPD-LLLQ 453 (492)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~l~~ 453 (492)
|. +..+....++ .+++|+.|+++++. ++ +..|..+..+++|++|++++| .++.+|. .+..
T Consensus 333 N~-l~~~~~~~~~-----------~l~~L~~L~Ls~N~-l~-----~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 393 (455)
T 3v47_A 333 NF-LGSIDSRMFE-----------NLDKLEVLDLSYNH-IR-----ALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDR 393 (455)
T ss_dssp SC-CCEECGGGGT-----------TCTTCCEEECCSSC-CC-----EECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred Cc-cCCcChhHhc-----------CcccCCEEECCCCc-cc-----ccChhhccccccccEEECCCC-ccccCCHhHhcc
Confidence 97 4554433322 78999999999874 33 334567789999999999995 6677765 4578
Q ss_pred CCCCCeEEEeCCCc
Q 011151 454 KTTLQKLLIGRCPI 467 (492)
Q Consensus 454 l~~L~~L~l~~c~~ 467 (492)
+++|++|++++|+.
T Consensus 394 l~~L~~L~l~~N~l 407 (455)
T 3v47_A 394 LTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEEccCCCc
Confidence 99999999999874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=262.01 Aligned_cols=328 Identities=15% Similarity=0.180 Sum_probs=258.3
Q ss_pred cCCCcccccccCccCCCCceEEEeccCCccccccc-----------------cchhhc--cCCeeeEEecchhhhhhccc
Q 011151 80 RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEV-----------------LPQLFD--KLTCLRALKLEVRQRWLCKN 140 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------~~~~~~--~~~~L~~L~L~~~~~~~~~~ 140 (492)
.+..+|..+. ++++|++|++++|. +.+. +|..++ .+++|++|+++ ++
T Consensus 194 ~l~~ip~~l~----~l~~L~~L~Ls~n~---l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~-------~n 259 (636)
T 4eco_A 194 NITFVSKAVM----RLTKLRQFYMGNSP---FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-------NC 259 (636)
T ss_dssp EEEEECGGGG----GCTTCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-------CC
T ss_pred CCccCCHHHh----cccCCCEEECcCCc---cccccccccccccccchhcccCchhhhhcccCCCCEEEec-------CC
Confidence 3333455555 99999999999998 6663 788888 99999999999 66
Q ss_pred c-ccccCchhhccCcCCEEEccCCC-Ccc-ccchhhhcC------CCCCeeecCcccccccccc--cccCCCCCcEEecC
Q 011151 141 F-IKKIPTNIEKLLHLKYLSLCGQR-EIE-KLPETLCEL------YNLERLNITSCNHLRELPQ--GIGKLRKLMYLDND 209 (492)
Q Consensus 141 ~-~~~l~~~~~~l~~L~~L~L~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~ 209 (492)
. .+.+|..+.++++|++|++++|. +.+ .+|..++++ ++|++|++++|. +..+|. .++++++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCc
Confidence 5 56789999999999999999998 555 799988887 999999999999 559998 89999999999999
Q ss_pred CCcccccccccccccccccccceEEeecccCCCcCccccccccc-cCCceEecCC--CCCChhhhhHhhhcc--cCCcce
Q 011151 210 DTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL-LRECSIRGLG--GVSDAGEARRAELEK--KKNLVE 284 (492)
Q Consensus 210 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~--~~~~~~~~~~~~l~~--~~~L~~ 284 (492)
+|.+.+.+| .+..+++|+.|++..+.... ....+..++. |+.+.+.... .++ ..+.. +++|+.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~~L~~L~Ls~N~l~~lp-------~~~~~~~l~~L~~ 406 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITE----IPANFCGFTEQVENLSFAHNKLKYIP-------NIFDAKSVSVMSA 406 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEEE----CCTTSEEECTTCCEEECCSSCCSSCC-------SCCCTTCSSCEEE
T ss_pred CCcCccchh-hhCCCCCCCEEECCCCcccc----ccHhhhhhcccCcEEEccCCcCcccc-------hhhhhcccCccCE
Confidence 999877888 89999999999999887663 2333555555 6666665433 232 22333 448999
Q ss_pred EecccccCCCCchhhHhhhhHHHHhhhcC-------CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 285 LGLHFDRLRDGDEEQARRRESERLLEALG-------PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 285 L~l~~~~l~~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
|++++|.+++ ..+..+. .+++|++|++++|.+.. +|+..+..+++|+.|++++|.+. .
T Consensus 407 L~Ls~N~l~~------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 407 IDFSYNEIGS------------VDGKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp EECCSSCTTT------------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred EECcCCcCCC------------cchhhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-C
Confidence 9999999643 2344454 66799999999999987 85556667999999999999877 4
Q ss_pred CCC--CC-------CCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc
Q 011151 358 LPP--LG-------KLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII 428 (492)
Q Consensus 358 ~~~--l~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 428 (492)
+|. +. ++++|++|++++|. ++.++..+.. ..+++|+.|+++++. ++ + +|..+.
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N~-l~-----~-ip~~~~ 533 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA----------TTLPYLVGIDLSYNS-FS-----K-FPTQPL 533 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST----------TTCTTCCEEECCSSC-CS-----S-CCCGGG
T ss_pred cCHHHhccccccccccCCccEEECcCCc-CCccChhhhh----------ccCCCcCEEECCCCC-CC-----C-cChhhh
Confidence 443 22 23399999999998 5566654431 178999999999874 33 3 567788
Q ss_pred CCCCcceEeec------CCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 429 IMPRLSFLEIS------GCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 429 ~~~~L~~L~l~------~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
.+++|+.|+++ +|...+.+|..+..+++|++|++++|..
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99999999995 4455667899999999999999999986
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=257.12 Aligned_cols=274 Identities=17% Similarity=0.053 Sum_probs=185.0
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
..+++++++++.+..++ ..+. ++++|++|++++|. +....|..|..+++|++|+++ ++.+..+ |
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLT-------ANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST----TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCSEECT
T ss_pred CcCcEEEccCCccCcCChhHhc----cCccceEEECCCCc---cceeChhhccCccccCeeeCC-------CCcccccCh
Confidence 68999999999998753 3444 89999999999998 777778889999999999999 8888776 5
Q ss_pred chhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
..+.++++|++|++++|. +..+ |..+.++++|++|++++|.+...-+..+..+++|++|++++|.+....|..+..++
T Consensus 99 ~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 679999999999999999 6665 56688999999999999994442223355599999999999988766677788888
Q ss_pred ccc--ccceEEeecccCCCcCcccc-----------------cccc-------------------------------ccC
Q 011151 226 NLR--RVTKFVVGGGYDRARSLGSL-----------------KKLN-------------------------------LLR 255 (492)
Q Consensus 226 ~L~--~L~l~~~~~~~~~~~~~~~l-----------------~~L~-------------------------------~L~ 255 (492)
+|+ .|++..+......+..+... ..+. .++
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 56555554432111111100 0000 111
Q ss_pred CceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCc
Q 011151 256 ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPR 335 (492)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~ 335 (492)
.+.+....- . ......+..+++|+.|++++|.++. ++..+..+++|++|++++|.+.. +++
T Consensus 258 ~L~l~~n~l-~---~~~~~~~~~l~~L~~L~l~~n~l~~-------------lp~~l~~l~~L~~L~l~~n~l~~--~~~ 318 (606)
T 3t6q_A 258 SINLQKHYF-F---NISSNTFHCFSGLQELDLTATHLSE-------------LPSGLVGLSTLKKLVLSANKFEN--LCQ 318 (606)
T ss_dssp EEECTTCCC-S---SCCTTTTTTCTTCSEEECTTSCCSC-------------CCSSCCSCTTCCEEECTTCCCSB--GGG
T ss_pred EEEeecCcc-C---ccCHHHhccccCCCEEeccCCccCC-------------CChhhcccccCCEEECccCCcCc--Cch
Confidence 122211110 0 0011235667778888888777532 34455666777777777776665 434
Q ss_pred hhhhccccccEEEEecccCCCcCCC--CCCCCccceeeccccc
Q 011151 336 NWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 336 ~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~l~~~~ 376 (492)
..+..+++|++|++++|.....++. +..+++|++|++++|.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 5566666667777666655544433 5556666666666655
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=265.92 Aligned_cols=314 Identities=13% Similarity=0.138 Sum_probs=221.9
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccc------------------cCchhh--ccCcCCEEEccCCCCccccchhhh
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKK------------------IPTNIE--KLLHLKYLSLCGQREIEKLPETLC 174 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~lp~~~~ 174 (492)
+|..|+++++|++|+|+ ++.+.. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 440 IP~~l~~L~~L~~L~Ls-------~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA-------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEE-------SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEECc-------CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 77788999999999999 788877 888877 999999999999987788998899
Q ss_pred cCCCCCeeecCccc-ccc-cccccccCCC-------CCcEEecCCCcccccccc--cccccccccccceEEeecccCCCc
Q 011151 175 ELYNLERLNITSCN-HLR-ELPQGIGKLR-------KLMYLDNDDTWFLRYLPV--GIGELINLRRVTKFVVGGGYDRAR 243 (492)
Q Consensus 175 ~l~~L~~L~l~~~~-~~~-~lp~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~ 243 (492)
++++|++|++++|. +.. .+|..++.++ +|++|++++|.+. .+|. .+..+++|+.|+++.+.... ++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-
Confidence 99999999999997 444 5777665544 8999999999876 7887 78888899998888776552 22
Q ss_pred CccccccccccCCceEecCCCCCChhhhhHhhhcccCC-cceEecccccCCCCchhhHhh------------h-hHH---
Q 011151 244 SLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKN-LVELGLHFDRLRDGDEEQARR------------R-ESE--- 306 (492)
Q Consensus 244 ~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~------------~-~~~--- 306 (492)
.+..++.|+.+.+....-. . ....+..+++ |+.|++++|.++..+...... . ...
T Consensus 590 ---~~~~L~~L~~L~Ls~N~l~-~----lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 590 ---AFGTNVKLTDLKLDYNQIE-E----IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp ---CCCTTSEESEEECCSSCCS-C----CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred ---hhcCCCcceEEECcCCccc-c----chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 4555666666555443221 1 1133666666 777777777765332100000 0 000
Q ss_pred HHhhhcC--CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CC--------CCCccceeecccc
Q 011151 307 RLLEALG--PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LG--------KLPSLESLYIEGM 375 (492)
Q Consensus 307 ~~~~~l~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~--------~l~~L~~L~l~~~ 375 (492)
.++..+. ..++|+.|++++|.+.. +|+..+..+++|+.|+|++|.+. .+|. .. ++++|+.|+|++|
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 0001111 23478888888888886 73444457889999999988766 4443 22 2348999999988
Q ss_pred ccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC------CCCcccCCc
Q 011151 376 QSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG------CCKLKALPD 449 (492)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~~ 449 (492)
. +..++..+.. ..+++|+.|+++++. ++. +|..+..+++|+.|+|++ |...+.+|.
T Consensus 739 ~-L~~lp~~l~~----------~~l~~L~~L~Ls~N~-L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 739 K-LTSLSDDFRA----------TTLPYLSNMDVSYNC-FSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp C-CCCCCGGGST----------TTCTTCCEEECCSSC-CSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred C-CccchHHhhh----------ccCCCcCEEEeCCCC-CCc------cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 6 5555544331 168899999998874 332 566778999999999976 444567888
Q ss_pred ccCCCCCCCeEEEeCCCc
Q 011151 450 LLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 450 ~l~~l~~L~~L~l~~c~~ 467 (492)
.+.++++|+.|++++|..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 899999999999999975
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=249.47 Aligned_cols=342 Identities=17% Similarity=0.117 Sum_probs=232.4
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
+++++++++++.+..++ ..+. ++++|++|++++|. +.+..|..|+.+++|++|+++ ++.+..+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL----SLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS-------HNKLVKISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT----TCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC-------SSCCCEEEC
T ss_pred ccccEEECCCCcccccChhhcc----ccccccEEecCCCc---cCCcChHHhhcccCCCEEecC-------CCceeecCc
Confidence 68999999999998755 3454 89999999999998 778678889999999999999 889999887
Q ss_pred hhhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccccccCCCCC--cEEecCCCcc--ccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKL--MYLDNDDTWF--LRYLPVGIG 222 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~ 222 (492)
. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....|..+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence 6 89999999999999333 467889999999999999998433 345666666 8888888766 344443333
Q ss_pred c--------------------------cccccccceE-------------------------------------------
Q 011151 223 E--------------------------LINLRRVTKF------------------------------------------- 233 (492)
Q Consensus 223 ~--------------------------l~~L~~L~l~------------------------------------------- 233 (492)
. +++|+.|++.
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 2 3333333333
Q ss_pred --------------EeecccCCCcCccc--cccccccCCceEecCCC-CCChhhhhHh---------------------h
Q 011151 234 --------------VVGGGYDRARSLGS--LKKLNLLRECSIRGLGG-VSDAGEARRA---------------------E 275 (492)
Q Consensus 234 --------------~~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~-~~~~~~~~~~---------------------~ 275 (492)
.+.....++..+.. ...++.|+.+.+..... ++.. .... .
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~--~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS--YIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTH--HHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchh--hhhcccccCceeEEEcCCCccccccc
Confidence 33322111111100 02333333333222111 1100 0000 0
Q ss_pred hcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc-ccCchhhhccccccEEEEecccC
Q 011151 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN-VVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 276 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
...+++|+.|++++|.+++ ..+..+..+++|++|++++|.+..- .+ |..+..+++|+.|++++|.+
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTD------------TVFENCGHLTELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp CSSCCCCCEEECCSSCCCT------------TTTTTCCCCSSCCEEECCSSCCCBHHHH-HHHHTTCTTCCEEECCSSCC
T ss_pred hhhCCcccEEEeECCccCh------------hhhhhhccCCCCCEEEccCCccCccccc-hHHHhhCCCCCEEECCCCcC
Confidence 1466777888888777532 2345667778888888888887750 13 45577888888888888877
Q ss_pred CCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCCCccccc-ccccceeccCcccccccccCccccccccCCC
Q 011151 355 CEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAF-PKLKHLKFYDMEELEEWDFGTAIKGEIIIMP 431 (492)
Q Consensus 355 ~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 431 (492)
.+.+|. +..+++|++|++++|.....++. .+ ++|+.|++++|. ++ .+|..+..++
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------~l~~~L~~L~Ls~N~-l~------~ip~~~~~l~ 444 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFR---------------CLPPRIKVLDLHSNK-IK------SIPKQVVKLE 444 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGG---------------SCCTTCCEEECCSSC-CC------CCCGGGGGCT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhh---------------hhcccCCEEECCCCc-cc------ccchhhhcCC
Confidence 664443 66778888888888763221111 23 588999888874 43 3556667899
Q ss_pred CcceEeecCCCCcccCCcc-cCCCCCCCeEEEeCCCc
Q 011151 432 RLSFLEISGCCKLKALPDL-LLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 432 ~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~ 467 (492)
+|+.|++++| .++.+|.. +..+++|++|++++|+.
T Consensus 445 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 9999999995 67788876 88899999999999985
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=255.32 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=116.8
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP- 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~- 146 (492)
..+++++++++.+..++. .+. ++++|++|++++|. +.+..+.+|+.+++|++|+++ ++.+..++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT----TCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECT
T ss_pred ccccEEEccCCccCccChhHhh----CCCCceEEECCCCc---CCccCcccccCchhCCEEeCc-------CCcCCccCH
Confidence 689999999999877543 344 89999999999998 777667788999999999999 88888776
Q ss_pred chhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
..+.++++|++|++++|. +..++. .++++++|++|++++|.+.. .+|..++++++|++|++++|.+....+..+..+
T Consensus 94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 568899999999999998 777765 58889999999999998444 478889999999999999997765555555555
Q ss_pred ccc
Q 011151 225 INL 227 (492)
Q Consensus 225 ~~L 227 (492)
.+|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 555
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=257.63 Aligned_cols=353 Identities=17% Similarity=0.143 Sum_probs=231.1
Q ss_pred cceEEEEEEeecCCCcccc-cccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPIS-IWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.++++++++++.+..++.. +. ++++|++|++++|. +.+..|.+|+.+++|++|+++ ++.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFT----RYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQ-------HNELSQLSD 90 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGG----GGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECC-------SSCCCCCCT
T ss_pred CCCcEEECCCCCCCCcCHHHHh----CCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECC-------CCccCccCh
Confidence 6899999999999886653 44 89999999999998 788778889999999999999 889999987
Q ss_pred -hhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccc--c
Q 011151 148 -NIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG--E 223 (492)
Q Consensus 148 -~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~ 223 (492)
.+.++++|++|++++|. +..++ ..++++++|++|++++|......|..++++++|++|++++|.+....+..+. .
T Consensus 91 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 59999999999999999 66665 5689999999999999996666677789999999999999987665555443 5
Q ss_pred cccccccceEEeecccCCCcCcccccccc------------------------ccCCceEecCCCCCChhhhhHhhhccc
Q 011151 224 LINLRRVTKFVVGGGYDRARSLGSLKKLN------------------------LLRECSIRGLGGVSDAGEARRAELEKK 279 (492)
Q Consensus 224 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~------------------------~L~~l~~~~~~~~~~~~~~~~~~l~~~ 279 (492)
+++|+.|++..+......+..+..+..++ .|+.+.+....-.. .....+..+
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~----~~~~~~~~l 245 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST----TSNTTFLGL 245 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE----ECTTTTGGG
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc----cChhHhhcc
Confidence 58899999887765542222233333221 22222222211100 001123333
Q ss_pred C--CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC-
Q 011151 280 K--NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE- 356 (492)
Q Consensus 280 ~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~- 356 (492)
+ +|+.|++++|.+++. .+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|....
T Consensus 246 ~~~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVV------------GNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp GGSCCCEEECTTSCCCEE------------CTTTTTTCTTCCEEECCSCCBSE--ECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcCCCCEEECCCCCcCcc------------CcccccCcccccEeeCCCCccCc--cChhhhcCCCCccEEeccchhhhcc
Confidence 3 377777776664321 23345666777777777776665 435566666667777666553322
Q ss_pred ----cCC-----CCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc---------------
Q 011151 357 ----HLP-----PLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME--------------- 412 (492)
Q Consensus 357 ----~~~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------- 412 (492)
.+| .+..+++|++|++++|. +..+.... ...+++|++|++++|.
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----------~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNM-----------FTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTT-----------TTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred cccccccccChhhcccCCCCCEEECCCCc-cCCCChhH-----------hccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 112 24456666666666665 22222211 1245566666655442
Q ss_pred --cccc-----cccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEEeCCC
Q 011151 413 --ELEE-----WDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 413 --~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 466 (492)
.++. ..+.+..|..+..+++|+.|++++|...+.+| ..+..+++|++|++++|.
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 1111 11223334556677778888887765444454 456667777777777775
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=253.45 Aligned_cols=276 Identities=15% Similarity=0.056 Sum_probs=202.4
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
+++..+.++..+|..+. +.++.|++++|. +.+..|..|..+++|++|+++ ++.+..+ |..+.+
T Consensus 16 ~~~c~~~~l~~iP~~l~------~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~~~ 79 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP------NSTECLEFSFNV---LPTIQNTTFSRLINLTFLDLT-------RCQIYWIHEDTFQS 79 (606)
T ss_dssp EEECTTSCCSSCCTTSC------TTCCEEECTTCC---CSEECTTTSTTCTTCSEEECT-------TCCCCEECTTTTTT
T ss_pred eEECCCCCcccCcCCCC------CcCcEEEccCCc---cCcCChhHhccCccceEEECC-------CCccceeChhhccC
Confidence 56666777777887765 579999999998 778678889999999999999 8888776 567999
Q ss_pred cCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVT 231 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 231 (492)
+++|++|++++|.+....|..++++++|++|++++|.+....|..++++++|++|++++|.+....+..+..+++|+.|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 99999999999994445577899999999999999994444467789999999999999988663334444599999999
Q ss_pred eEEeecccCCCcCccccccccccC--CceEecCC--CCCChh-h------------------------------------
Q 011151 232 KFVVGGGYDRARSLGSLKKLNLLR--ECSIRGLG--GVSDAG-E------------------------------------ 270 (492)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~L~~L~--~l~~~~~~--~~~~~~-~------------------------------------ 270 (492)
+..+..... ....+..++.|+ .+.+.... ..+... .
T Consensus 160 L~~n~l~~~---~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 160 FQNNAIHYL---SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp CCSSCCCEE---CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred cccCccccc---ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 988866531 122344444444 23332211 111000 0
Q ss_pred ------hhHhhhcccC--CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccc
Q 011151 271 ------ARRAELEKKK--NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLT 342 (492)
Q Consensus 271 ------~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~ 342 (492)
.....+.++. +|+.+++++|.+++. .+..+..+++|++|++++|.+.. + |..+..++
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~--l-p~~l~~l~ 301 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNI------------SSNTFHCFSGLQELDLTATHLSE--L-PSGLVGLS 301 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC------------CTTTTTTCTTCSEEECTTSCCSC--C-CSSCCSCT
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCcc------------CHHHhccccCCCEEeccCCccCC--C-Chhhcccc
Confidence 0000111111 567777777775432 23346778999999999999987 8 77889999
Q ss_pred cccEEEEecccCCCcCCC-CCCCCccceeeccccccceeec
Q 011151 343 NLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 343 ~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
+|++|++++|.+....+. +..+++|++|++++|.....++
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 999999999988776554 7889999999999997443443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=245.08 Aligned_cols=340 Identities=15% Similarity=0.094 Sum_probs=228.7
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
++++.+++++|.+..++. .+. ++++|++|++++|. +.+..|++|..+++|++|+++ ++.+..+|.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVS-------HNRLQNISC 117 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECS
T ss_pred CCcCEEECCCCCccccChhhhc----cCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECC-------CCcCCccCc
Confidence 688899999998887553 444 88899999999887 777667888889999999998 888888887
Q ss_pred hhhccCcCCEEEccCCCCcccc--chhhhcCCCCCeeecCcccccccccccccCCCCC--cEEecCCCcc--cccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKL--PETLCELYNLERLNITSCNHLRELPQGIGKLRKL--MYLDNDDTWF--LRYLPVGI 221 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~l 221 (492)
. .+++|++|++++|. +..+ |..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....|..+
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccc
Confidence 6 78899999999998 6654 4678889999999999887433 234444555 8888888766 44444333
Q ss_pred ccc--------------------------c--------------------------------------------------
Q 011151 222 GEL--------------------------I-------------------------------------------------- 225 (492)
Q Consensus 222 ~~l--------------------------~-------------------------------------------------- 225 (492)
..+ +
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 322 1
Q ss_pred -----cccccceEEeecccCCCcCccc--cccccccCCceEecCCC-CCChhhhhH---------------------hhh
Q 011151 226 -----NLRRVTKFVVGGGYDRARSLGS--LKKLNLLRECSIRGLGG-VSDAGEARR---------------------AEL 276 (492)
Q Consensus 226 -----~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~-~~~~~~~~~---------------------~~l 276 (492)
+|+.|++..+.....++..+.. ...++.|+.+.+..... ++. .... ...
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 349 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK--EALYSVFAEMNIKMLSISDTPFIHMVCP 349 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH--HHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh--hhhhhhhccCcceEEEccCCCcccccCc
Confidence 3444444444333211111100 02222222222111110 000 0000 001
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC--chhhhccccccEEEEecccC
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP--RNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~--~~~~~~l~~L~~L~L~~~~~ 354 (492)
..+++|+.|++++|.++ ...+..+..+++|++|++++|.+.. ++ |..+..+++|+.|++++|.+
T Consensus 350 ~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT------------DSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCEEECCSSCCC------------TTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCC
T ss_pred cCCCCceEEECCCCccc------------cchhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcC
Confidence 56778888888888754 2345567778888999998888776 41 24567888899999988877
Q ss_pred CCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCCCccccc-ccccceeccCcccccccccCccccccccCCC
Q 011151 355 CEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAF-PKLKHLKFYDMEELEEWDFGTAIKGEIIIMP 431 (492)
Q Consensus 355 ~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 431 (492)
...+|. +..+++|++|++++|.....++ . .+ ++|+.|+++++. ++. +|..+..++
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~-----------~l~~~L~~L~L~~N~-l~~------ip~~~~~l~ 473 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVF----R-----------CLPPKVKVLDLHNNR-IMS------IPKDVTHLQ 473 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGG----S-----------SCCTTCSEEECCSSC-CCC------CCTTTTSSC
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchh----h-----------hhcCcCCEEECCCCc-Ccc------cChhhcCCC
Confidence 764543 6778889999998887322111 1 33 589999998873 543 555666899
Q ss_pred CcceEeecCCCCcccCCcc-cCCCCCCCeEEEeCCCc
Q 011151 432 RLSFLEISGCCKLKALPDL-LLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 432 ~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~ 467 (492)
+|+.|++++ +.++.+|.. +..+++|+.|++++|+.
T Consensus 474 ~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 474 ALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999999 467788876 88899999999999985
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=247.57 Aligned_cols=360 Identities=18% Similarity=0.196 Sum_probs=242.5
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
+.+++++++++.+..++ ..+. ++++|++|++++|. +.+..|.+|..+++|++|+++ ++.+..++.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLS-------DNHLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCSCCH
T ss_pred CCccEEECcCCccCccChhhhh----cCCcccEEECCCCC---cCccChhhccccccCCEEECC-------CCccCccCH
Confidence 68999999999987743 3444 89999999999998 777677889999999999999 888888876
Q ss_pred h-hhccCcCCEEEccCCCCcc--ccchhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIGE 223 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 223 (492)
. +.++++|++|++++|. +. ..|..+.++++|++|++++|.....+| ..++++++|++|++++|.+.+..|..+..
T Consensus 92 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 5 8999999999999998 55 456678899999999999998666665 46888999999999999887777777666
Q ss_pred cccccccceE------------------------EeecccCC--C-cCcccc-------------------------ccc
Q 011151 224 LINLRRVTKF------------------------VVGGGYDR--A-RSLGSL-------------------------KKL 251 (492)
Q Consensus 224 l~~L~~L~l~------------------------~~~~~~~~--~-~~~~~l-------------------------~~L 251 (492)
+++|++|++. .+...... + .....+ ..+
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 5555555444 33322100 0 000000 001
Q ss_pred cccCCceEecCC-----CC------------------------CCh--------------------------hhhhHhhh
Q 011151 252 NLLRECSIRGLG-----GV------------------------SDA--------------------------GEARRAEL 276 (492)
Q Consensus 252 ~~L~~l~~~~~~-----~~------------------------~~~--------------------------~~~~~~~l 276 (492)
..|+.+.+..+. .. +.. .......+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 111111111110 00 000 00000112
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHH---hhhcCCCCCccEEEEeecCCCccccCc--hhhhccccccEEEEec
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERL---LEALGPPPNLKELVIDEYRGRRNVVPR--NWVMSLTNLRALLLKN 351 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~L~~ 351 (492)
..+++|+.|++++|.++ ... +..+..+++|++|++++|.+.. +++ ..+..+++|+.|++++
T Consensus 331 ~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMV------------EEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp HHCTTCCEEECCSSCCC------------HHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTT
T ss_pred hcCccccEEEccCCccc------------cccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCC
Confidence 45777888888887743 222 2336778999999999998877 522 3577899999999999
Q ss_pred ccCCCcCCCCCCCCccceeeccccccceeecccccCCc------CCCCCCcccccccccceeccCcccccccccCccccc
Q 011151 352 CRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVE------SDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKG 425 (492)
Q Consensus 352 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 425 (492)
|.+......+..+++|++|++++|. ++.++..+.... .-........+++|++|+++++. ++. +|.
T Consensus 397 N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~------ip~ 468 (549)
T 2z81_A 397 NTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKT------LPD 468 (549)
T ss_dssp CCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSS------CCC
T ss_pred CCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCc------CCC
Confidence 9776433347788999999999887 444332211000 00111122367888888888874 443 333
Q ss_pred cccCCCCcceEeecCCCCcccC-CcccCCCCCCCeEEEeCCCc
Q 011151 426 EIIIMPRLSFLEISGCCKLKAL-PDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 426 ~~~~~~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~ 467 (492)
...+++|+.|++++| .++.+ |..+..+++|+.|++++|+.
T Consensus 469 -~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 469 -ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 346899999999996 45555 45588899999999999984
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=230.78 Aligned_cols=302 Identities=18% Similarity=0.214 Sum_probs=196.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++++++.++.+..++. +. .+++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++ .
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~----~~~~L~~L~l~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IE----YLTNLEYLNLNGNQ---ITD-ISP-LSNLVKLTNLYIG-------TNKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCG-G
T ss_pred ccccEEEEeCCccccchh-hh----hcCCccEEEccCCc---ccc-chh-hhcCCcCCEEEcc-------CCcccCch-H
Confidence 456666666666655432 32 56666666666665 444 233 5666666666666 55555553 3
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..++. +..+++|++|++++|.....++. +..+++|++|++++|.+....+ +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 5666666666666666 555554 56666666666666653444333 5666666666666665432211 44455555
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|++..+... .. ..+..+++|+.+++++|.+.+..
T Consensus 181 ~L~l~~n~l~---------------------------~~------~~~~~l~~L~~L~l~~n~l~~~~------------ 215 (347)
T 4fmz_A 181 SLSLNYNQIE---------------------------DI------SPLASLTSLHYFTAYVNQITDIT------------ 215 (347)
T ss_dssp EEECTTSCCC---------------------------CC------GGGGGCTTCCEEECCSSCCCCCG------------
T ss_pred EEEccCCccc---------------------------cc------ccccCCCccceeecccCCCCCCc------------
Confidence 5544433211 10 12556778888888888764331
Q ss_pred hhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCC
Q 011151 309 LEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGV 388 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 388 (492)
.+..+++|++|++++|.+.. + +. +..+++|+.|++++|.+.. ++.+..+++|++|++++|. +..++ .
T Consensus 216 --~~~~~~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~--~--- 282 (347)
T 4fmz_A 216 --PVANMTRLNSLKIGNNKITD--L-SP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS--V--- 282 (347)
T ss_dssp --GGGGCTTCCEEECCSSCCCC--C-GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG--G---
T ss_pred --hhhcCCcCCEEEccCCccCC--C-cc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh--h---
Confidence 15667889999999998877 5 43 7889999999999986554 4567888999999999986 44432 1
Q ss_pred cCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 389 ESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
...+++|+.|++++|. +.. ..|..+..+++|+.|++++|+ ++.++. +..+++|++|++++|+.
T Consensus 283 --------~~~l~~L~~L~L~~n~-l~~-----~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 --------LNNLSQLNSLFLNNNQ-LGN-----EDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp --------GGGCTTCSEEECCSSC-CCG-----GGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred --------hcCCCCCCEEECcCCc-CCC-----cChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 2378899999999875 332 234567789999999999975 566655 77899999999999973
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=247.27 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=129.1
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~ 150 (492)
+.++.++.++..+|..+. +.++.|++++|. +.+..+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~~~~------~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP------SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLS-------RCEIETIEDKAWH 77 (606)
T ss_dssp TEEECTTSCCSSCCTTSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTT
T ss_pred CceEccCCCcccCCCCCC------CCcCEEECCCCC---cCEeChhhccCCccCcEEeCC-------CCcccccCHHHhh
Confidence 357777788888887654 889999999998 788677789999999999999 8888887 45689
Q ss_pred ccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc-ccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR-YLPVGIGELINLR 228 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 228 (492)
++++|++|++++|. +..+ |..++++++|++|++++|.+....+..++++++|++|++++|.+.. .+|..+.++++|+
T Consensus 78 ~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 78 GLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred chhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 99999999999999 6655 7789999999999999999444444779999999999999998865 5789999999999
Q ss_pred ccceEEeeccc
Q 011151 229 RVTKFVVGGGY 239 (492)
Q Consensus 229 ~L~l~~~~~~~ 239 (492)
+|+++.+....
T Consensus 157 ~L~Ls~n~l~~ 167 (606)
T 3vq2_A 157 HVDLSYNYIQT 167 (606)
T ss_dssp EEECCSSCCCE
T ss_pred EEEccCCccee
Confidence 99998876654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=247.37 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=124.7
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~ 150 (492)
++++++++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+++ ++.+..+ |..+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~------~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS------QKTTILNISQNY---ISELWTSDILSLSKLRILIIS-------HNRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSCC------TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECC-------SSCCCEEEGGGGT
T ss_pred ceEecCCCCccccccccc------ccccEEECCCCc---ccccChhhccccccccEEecC-------CCccCCcChHHhh
Confidence 578899999998887653 899999999998 778677889999999999999 8888887 67899
Q ss_pred ccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccc--
Q 011151 151 KLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL-- 227 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-- 227 (492)
++++|++|++++|. ++.+|.. .+++|++|++++|.+.. .+|..++++++|++|++++|.+.. ..+..+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 140 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNI 140 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCE
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccccee
Confidence 99999999999999 7889876 89999999999999554 467889999999999999997754 346667777
Q ss_pred cccceEEeec
Q 011151 228 RRVTKFVVGG 237 (492)
Q Consensus 228 ~~L~l~~~~~ 237 (492)
+.|++..+..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999988866
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=252.99 Aligned_cols=349 Identities=19% Similarity=0.178 Sum_probs=246.2
Q ss_pred ccceEEEEEEeecCCCc-ccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-
Q 011151 68 EKKILHLLLTLHRGASV-PISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI- 145 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l- 145 (492)
.+++++|++++|.+..+ +..+. ++++|++|++++|.. .....|.+|.++++|++|+|+ ++.+..+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~----~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls-------~N~l~~~~ 89 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLG-------SSKIYFLH 89 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS----SCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECT-------TCCCCEEC
T ss_pred CCCcCEEECCCCcCCccChhHCc----ccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECC-------CCcCcccC
Confidence 37999999999998874 34444 999999999999951 333347889999999999999 8888776
Q ss_pred CchhhccCcCCEEEccCCCCccccchh--hhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCccccccccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLPET--LCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 222 (492)
|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+....+ ..++++++|++|++++|.+....+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 778999999999999999944456665 8899999999999999544333 5689999999999999988777777777
Q ss_pred cc--ccccccceEEeecccCCCcCcccccc-c--cccCCceEecCCCCCChhh---------------------------
Q 011151 223 EL--INLRRVTKFVVGGGYDRARSLGSLKK-L--NLLRECSIRGLGGVSDAGE--------------------------- 270 (492)
Q Consensus 223 ~l--~~L~~L~l~~~~~~~~~~~~~~~l~~-L--~~L~~l~~~~~~~~~~~~~--------------------------- 270 (492)
.+ ++|+.|++..+......+..+..+.. + ..|+.+.+...........
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 76 78999988887665422222222211 0 1244444433211000000
Q ss_pred -----hhHhhhcc--cCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhcccc
Q 011151 271 -----ARRAELEK--KKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTN 343 (492)
Q Consensus 271 -----~~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~ 343 (492)
.....+.+ .++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.. +++..+..+++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~ 315 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS------------LNSRVFETLKDLKVLNLAYNKINK--IADEAFYGLDN 315 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE------------ECSCCSSSCCCCCEEEEESCCCCE--ECTTTTTTCSS
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccc------------cChhhhhcCCCCCEEECCCCcCCC--CChHHhcCCCC
Confidence 00111222 2678999998888532 234556778999999999999887 65777889999
Q ss_pred ccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcc
Q 011151 344 LRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTA 422 (492)
Q Consensus 344 L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 422 (492)
|++|++++|.+....+. +..+++|+.|++++|. +..++...+ ..+++|+.|+++++. ++.+.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-----------~~l~~L~~L~Ls~N~-l~~i~---- 378 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF-----------KFLEKLQTLDLRDNA-LTTIH---- 378 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS-----------CSCCCCCEEEEETCC-SCCCS----
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh-----------cCCCCCCEEECCCCC-CCccc----
Confidence 99999999987766554 8889999999999986 544443322 267889998888764 33221
Q ss_pred ccccccCCCCcceEeecCCCCcccCCc----------------------ccCCCCCCCeEEEeCCCc
Q 011151 423 IKGEIIIMPRLSFLEISGCCKLKALPD----------------------LLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~c~~l~~l~~----------------------~l~~l~~L~~L~l~~c~~ 467 (492)
.+++|+.|++++| .++.+|. .+..+++|+.|++++|..
T Consensus 379 ------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 379 ------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 2455555555553 2233322 234688899999988863
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=241.04 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=112.3
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
.+..+++.+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..+ |..+.+
T Consensus 15 ~v~c~~~~l~~ip~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP------TETRLLDLGKNR---IKTLNQDEFASFPHLEELELN-------ENIVSAVEPGAFNN 78 (477)
T ss_dssp EEECCSCCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTT
T ss_pred EEEeCCCCcCcCCCCCC------CCCcEEECCCCc---cceECHhHccCCCCCCEEECC-------CCccCEeChhhhhC
Confidence 45556666776676553 578888888887 777666778888888888888 7777776 566888
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 230 (492)
+++|++|++++|. +..+|.. +.++++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 79 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 8888888888888 7777654 6778888888888888555556677888888888888887766666677778888888
Q ss_pred ceEEeecc
Q 011151 231 TKFVVGGG 238 (492)
Q Consensus 231 ~l~~~~~~ 238 (492)
++..+...
T Consensus 158 ~l~~n~l~ 165 (477)
T 2id5_A 158 TLEKCNLT 165 (477)
T ss_dssp EEESCCCS
T ss_pred ECCCCcCc
Confidence 77766443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=232.98 Aligned_cols=305 Identities=17% Similarity=0.137 Sum_probs=207.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc-h
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP-E 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp-~ 171 (492)
.+++++.|++.++. +....+..|..+++|++|+++ ++.+..++. .+.++++|++|++++|. +..++ .
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECC-------CCcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 35666777776665 555344445666777777776 666666553 56667777777777776 44443 3
Q ss_pred hhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 172 TLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.+.++++|++|++++|. +..+|.. ++++++|++|++++|.+....+..+..+++|+.|++..+.... . .+..
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~----~~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V----DLSL 184 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--C----CGGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc--c----cccc
Confidence 45667777777777776 4455544 3667777777777776655555556666777777666655442 1 1233
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
++.|+.+.+....- ..+...++|+.|++++|.+.... ....++|+.|++++|.+..
T Consensus 185 l~~L~~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~~~~---------------~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 185 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSINVVR---------------GPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CTTCSEEECCSSCC---------SEEECCSSCSEEECCSSCCCEEE---------------CCCCSSCCEEECCSSCCCC
T ss_pred ccccceeecccccc---------cccCCCCcceEEECCCCeeeecc---------------ccccccccEEECCCCCCcc
Confidence 34444444433211 12344568999999998864221 1235789999999999887
Q ss_pred cccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 331 NVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 331 ~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
..++..+++|+.|++++|.+.+..+. +..+++|++|++++|. ++.++..+ ..+|+|+.|+++
T Consensus 241 ----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L~~L~L~ 303 (390)
T 3o6n_A 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLS 303 (390)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTCCEEECC
T ss_pred ----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCCCEEECC
Confidence 46788999999999999987776554 8889999999999987 55544322 278999999999
Q ss_pred CcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 410 DMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 410 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
++. ++. +|..+..+++|+.|++++| .++.++ +..+++|++|++++|+.
T Consensus 304 ~n~-l~~------~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 304 HNH-LLH------VERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SSC-CCC------CGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCc-cee------cCccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 984 543 3445668899999999995 566675 67789999999999985
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=243.30 Aligned_cols=353 Identities=15% Similarity=0.119 Sum_probs=227.9
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cch
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTN 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~ 148 (492)
..++++++++.+..+|..+. ++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..+ |..
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~------~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~ 95 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP------PRTKALSLSQNS---ISELRMPDISFLSELRVLRLS-------HNRIRSLDFHV 95 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC------TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECC-------SCCCCEECTTT
T ss_pred CCcEEEcCCCCCccCCCCCC------CCcCEEECCCCC---ccccChhhhccCCCccEEECC-------CCCCCcCCHHH
Confidence 34789999999998887653 899999999998 778677889999999999999 8898887 567
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
+.++++|++|++++|. +..+|.. .+++|++|++++|.+.. ..|..++++++|++|++++|.+... .+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L 169 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL 169 (562)
T ss_dssp TTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS
T ss_pred hCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc
Confidence 9999999999999999 8899876 89999999999999433 3457899999999999999977543 34455555
Q ss_pred --cccceEEeec--ccCCCcCccccc-----------------------cccccCCceEecCCCCCChhhhhHhhhc---
Q 011151 228 --RRVTKFVVGG--GYDRARSLGSLK-----------------------KLNLLRECSIRGLGGVSDAGEARRAELE--- 277 (492)
Q Consensus 228 --~~L~l~~~~~--~~~~~~~~~~l~-----------------------~L~~L~~l~~~~~~~~~~~~~~~~~~l~--- 277 (492)
+.|++..+.. ....+..+..+. .++.|+.+++......-.........+.
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 9999988766 321122222211 2334444444331100000000001111
Q ss_pred ------------------------ccCCcceEecccccCCCCchhhHh----------------h---hhHHHHhhhc--
Q 011151 278 ------------------------KKKNLVELGLHFDRLRDGDEEQAR----------------R---RESERLLEAL-- 312 (492)
Q Consensus 278 ------------------------~~~~L~~L~l~~~~l~~~~~~~~~----------------~---~~~~~~~~~l-- 312 (492)
..++|+.|++++|.+++.-..... . .........+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 123666666666654421100000 0 0000000000
Q ss_pred --------------------CCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcC--C-CCCCCCccce
Q 011151 313 --------------------GPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHL--P-PLGKLPSLES 369 (492)
Q Consensus 313 --------------------~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~--~-~l~~l~~L~~ 369 (492)
..+++|++|++++|.+.. ..|.++..+++|+.|++++|.+.+.. + .+..+++|++
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 345666777776666655 22555666677777777776554321 1 2566677777
Q ss_pred eeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCC-CCcceEeecCCCCcccCC
Q 011151 370 LYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIM-PRLSFLEISGCCKLKALP 448 (492)
Q Consensus 370 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~ 448 (492)
|++++|.....++...+ ..+++|+.|+++++. ++ +..|. .+ ++|+.|++++| .++.+|
T Consensus 408 L~l~~N~l~~~~~~~~~-----------~~l~~L~~L~l~~n~-l~-----~~~~~---~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTC-----------AWAESILVLNLSSNM-LT-----GSVFR---CLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp EECTTSCCBSCCSSCCC-----------CCCTTCCEEECCSSC-CC-----GGGGS---SCCTTCSEEECCSS-CCCCCC
T ss_pred EECCCCcCCCccChhhh-----------cCcccCCEEECCCCC-CC-----cchhh---hhcCcCCEEECCCC-cCcccC
Confidence 77776662222333222 256788888887764 32 22222 33 69999999995 778899
Q ss_pred cccCCCCCCCeEEEeCCCc
Q 011151 449 DLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 449 ~~l~~l~~L~~L~l~~c~~ 467 (492)
..+..+++|++|++++|..
T Consensus 467 ~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQL 485 (562)
T ss_dssp TTTTSSCCCSEEECCSSCC
T ss_pred hhhcCCCCCCEEECCCCCC
Confidence 8888999999999999964
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=232.89 Aligned_cols=322 Identities=20% Similarity=0.247 Sum_probs=188.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++.+.+.++.+..++. +. .+++|++|++++|. +.. ++. +..+++|++|+++ ++.+..++.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~----~l~~L~~L~Ls~n~---l~~-~~~-~~~l~~L~~L~l~-------~n~l~~~~~- 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 107 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred ccccEEecCCCCCccCcc-hh----hhcCCCEEECCCCc---cCC-chh-hhccccCCEEECC-------CCccccChh-
Confidence 466777777776665442 33 66777777777776 555 333 6677777777777 666666655
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccc--------------------cccCCCCCcEEec
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ--------------------GIGKLRKLMYLDN 208 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--------------------~~~~l~~L~~L~l 208 (492)
+.++++|++|++++|. +..++. +.++++|++|++++|. +..++. .+.++++|++|++
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence 6677777777777776 665654 6667777777777766 444432 1344455555555
Q ss_pred CCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecc
Q 011151 209 DDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLH 288 (492)
Q Consensus 209 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 288 (492)
++|.+.. + ..+..+++|+.|++..+.... ...+..++.|+.+.+....-... ..+..+++|+.|+++
T Consensus 185 ~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 185 SSNKVSD-I-SVLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLA 251 (466)
T ss_dssp CSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred cCCcCCC-C-hhhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECC
Confidence 5554322 1 124445555555555443332 11133344444444443321111 234555666666666
Q ss_pred cccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccc
Q 011151 289 FDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLE 368 (492)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~ 368 (492)
+|.+++.. .+..+++|++|++++|.+.. + +. +..+++|+.|++++|.+.+ ++.+..+++|+
T Consensus 252 ~n~l~~~~--------------~~~~l~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~ 312 (466)
T 1o6v_A 252 NNQISNLA--------------PLSGLTKLTELKLGANQISN--I-SP-LAGLTALTNLELNENQLED-ISPISNLKNLT 312 (466)
T ss_dssp SSCCCCCG--------------GGTTCTTCSEEECCSSCCCC--C-GG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCS
T ss_pred CCccccch--------------hhhcCCCCCEEECCCCccCc--c-cc-ccCCCccCeEEcCCCcccC-chhhcCCCCCC
Confidence 66543221 14556667777777776665 4 22 5566777777777765443 33355667777
Q ss_pred eeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCC
Q 011151 369 SLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP 448 (492)
Q Consensus 369 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 448 (492)
.|++++|. +..+.. ...+++|+.|++++|. ++.. ..+..+++|+.|++++|. ++.++
T Consensus 313 ~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP-------------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp EEECCSSC-CSCCGG-------------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSC-CCBCG
T ss_pred EEECcCCc-CCCchh-------------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCc-cCccc
Confidence 77777765 222211 2267788888887764 4432 245678888888888864 44444
Q ss_pred cccCCCCCCCeEEEeCCCc
Q 011151 449 DLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 449 ~~l~~l~~L~~L~l~~c~~ 467 (492)
. +..+++|+.|++++|+.
T Consensus 370 ~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 370 P-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp G-GTTCTTCCEEECCCEEE
T ss_pred h-hhcCCCCCEEeccCCcc
Confidence 3 77788888888888864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=245.80 Aligned_cols=133 Identities=21% Similarity=0.233 Sum_probs=106.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
+++++++++++.+..++.. ++.++++|++|++++|. +....|..|..+++|++|+++ ++.+..++.
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~l~~~ 118 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAV-------ETNLASLENF 118 (570)
T ss_dssp SSCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TSCCCCSTTC
T ss_pred CCceEEECCCCcCCccCcc---cccCchhCCEEeCcCCc---CCccCHhhhcCcccccccccc-------ccccccCCCc
Confidence 6899999999988775432 23489999999999998 777667889999999999999 888888875
Q ss_pred hhhccCcCCEEEccCCCCcc--ccchhhhcCCCCCeeecCcccccccccccccCCCCC----cEEecCCCcccc
Q 011151 148 NIEKLLHLKYLSLCGQREIE--KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKL----MYLDNDDTWFLR 215 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L----~~L~l~~~~~~~ 215 (492)
.+.++++|++|++++|. +. .+|..++++++|++|++++|.+....|..++.+++| +.|++++|.+..
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp SCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred cccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 58899999999999998 55 478889999999999999998444445556666666 677777765543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=237.13 Aligned_cols=334 Identities=14% Similarity=0.129 Sum_probs=242.9
Q ss_pred ccceEEEEEEeecCCC-c-ccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-
Q 011151 68 EKKILHLLLTLHRGAS-V-PISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK- 144 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~- 144 (492)
.++++.++++++.+.. + +..+ .++++|++|++++|. +.+..|..|+.+++|++|+++ ++.+..
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~----~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~ 118 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTF----RGLSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLT-------QCNLDGA 118 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTT----TTCTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECT-------TSCCBTH
T ss_pred CccccEEECcCCcccceECcccc----cccccCCEEeCCCCc---cCccChhhccCcccCCEEeCC-------CCCCCcc
Confidence 4789999999998753 3 2334 489999999999998 777678889999999999999 888765
Q ss_pred cCch--hhccCcCCEEEccCCCCcccc-chh-hhcCCCCCeeecCcccccccccccccCC--CCCcEEecCCCccccccc
Q 011151 145 IPTN--IEKLLHLKYLSLCGQREIEKL-PET-LCELYNLERLNITSCNHLRELPQGIGKL--RKLMYLDNDDTWFLRYLP 218 (492)
Q Consensus 145 l~~~--~~~l~~L~~L~L~~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~~~~ 218 (492)
.+.. +.++++|++|++++|. +..+ |.. +.++++|++|++++|.+....|..+..+ .+|+.|++++|.+....+
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred ccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccch
Confidence 3443 8899999999999999 5554 655 8899999999999999666667667665 789999999997754333
Q ss_pred cc--------ccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCCh------hhhhHhhhc--ccCCc
Q 011151 219 VG--------IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDA------GEARRAELE--KKKNL 282 (492)
Q Consensus 219 ~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~------~~~~~~~l~--~~~~L 282 (492)
.. +..+++|+.|+++.+......+..+........++.+.+......... .......+. ..++|
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence 22 335678999999887654311222222222244444444433111100 000001122 34689
Q ss_pred ceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-C
Q 011151 283 VELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-L 361 (492)
Q Consensus 283 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l 361 (492)
+.+++++|.+. ...+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +
T Consensus 278 ~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 278 KTCDLSKSKIF------------ALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CEEECCSSCCC------------EECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred eEEEecCcccc------------ccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 99999999854 2345567888999999999999887 6577889999999999999988666555 7
Q ss_pred CCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCC
Q 011151 362 GKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGC 441 (492)
Q Consensus 362 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 441 (492)
..+++|++|++++|. +..+....+ ..+++|++|+++++. ++.+. +..+..+++|+.|++++|
T Consensus 344 ~~l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 344 ENLDKLEVLDLSYNH-IRALGDQSF-----------LGLPNLKELALDTNQ-LKSVP-----DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTT-----------TTCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSS
T ss_pred cCcccCCEEECCCCc-ccccChhhc-----------cccccccEEECCCCc-cccCC-----HhHhccCCcccEEEccCC
Confidence 889999999999998 444433222 278999999999974 54432 234578999999999998
Q ss_pred CCcccCC
Q 011151 442 CKLKALP 448 (492)
Q Consensus 442 ~~l~~l~ 448 (492)
+...+.|
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 7666655
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=222.19 Aligned_cols=280 Identities=19% Similarity=0.260 Sum_probs=208.7
Q ss_pred ccceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 68 EKKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 68 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.+++++++++++.+..++. +. ++++|++|++++|. +.. ++ .+..+++|++|+++ ++.+..++.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~----~l~~L~~L~L~~n~---i~~-~~-~~~~l~~L~~L~l~-------~n~i~~~~~ 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LS----NLVKLTNLYIGTNK---ITD-IS-ALQNLTNLRELYLN-------EDNISDISP 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GT----TCTTCCEEECCSSC---CCC-CG-GGTTCTTCSEEECT-------TSCCCCCGG
T ss_pred cCCccEEEccCCccccchh-hh----cCCcCCEEEccCCc---ccC-ch-HHcCCCcCCEEECc-------CCcccCchh
Confidence 3789999999999988665 44 89999999999998 555 44 38999999999999 888988876
Q ss_pred hhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
+..+++|++|++++|.....++ .+..+++|++|++++|. +..++. +..+++|++|++++|.+.. ++. +..+++|
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L 201 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSL 201 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTC
T ss_pred -hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccc-ccc-ccCCCcc
Confidence 8899999999999997566655 48999999999999998 555554 8899999999999997643 333 6667777
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... . ..+..+++|+.|++++|.+++..
T Consensus 202 ~~L~l~~n~l~~-----~----------------------------~~~~~~~~L~~L~l~~n~l~~~~----------- 237 (347)
T 4fmz_A 202 HYFTAYVNQITD-----I----------------------------TPVANMTRLNSLKIGNNKITDLS----------- 237 (347)
T ss_dssp CEEECCSSCCCC-----C----------------------------GGGGGCTTCCEEECCSSCCCCCG-----------
T ss_pred ceeecccCCCCC-----C----------------------------chhhcCCcCCEEEccCCccCCCc-----------
Confidence 777665543221 0 11445667788888887764321
Q ss_pred HhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccC
Q 011151 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLG 387 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 387 (492)
.+..+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+ ++.+..+++|++|++++|. +.......
T Consensus 238 ---~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-- 306 (347)
T 4fmz_A 238 ---PLANLSQLTWLEIGTNQISD--I--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDMEV-- 306 (347)
T ss_dssp ---GGTTCTTCCEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGHHH--
T ss_pred ---chhcCCCCCEEECCCCccCC--C--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcChhH--
Confidence 16677888888888887776 4 457788888888888885544 4557778888888888886 33222221
Q ss_pred CcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCC
Q 011151 388 VESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCC 442 (492)
Q Consensus 388 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 442 (492)
+..+++|+.|++++|+ ++... | +..+++|++|++++|+
T Consensus 307 ---------l~~l~~L~~L~L~~n~-l~~~~-----~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 ---------IGGLTNLTTLFLSQNH-ITDIR-----P--LASLSKMDSADFANQV 344 (347)
T ss_dssp ---------HHTCTTCSEEECCSSS-CCCCG-----G--GGGCTTCSEESSSCC-
T ss_pred ---------hhccccCCEEEccCCc-ccccc-----C--hhhhhccceeehhhhc
Confidence 2267888888888875 43322 1 5578899999998864
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=240.44 Aligned_cols=306 Identities=17% Similarity=0.133 Sum_probs=212.7
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE- 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~- 171 (492)
.+++++.+++.++. +....+..|..+++|++|+++ ++.+..++. .+.++++|++|++++|. +..+|+
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-------DLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECT-------TSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECC-------CCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 35667777777766 555445556677777777777 666666653 56777777777777777 554443
Q ss_pred hhhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccc
Q 011151 172 TLCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.++++++|++|++++|. +..+|.. ++.+++|++|++++|.+....|..+..+++|+.|+++.+.... . .+..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSL 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhh
Confidence 35677777777777776 4455544 4677777777777776665556667777777777776665443 1 1233
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
++.|+.+.+....- ..+...++|+.|++++|.+.... . ...++|+.|++++|.+..
T Consensus 191 l~~L~~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~~~-------------~--~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 191 IPSLFHANVSYNLL---------STLAIPIAVEELDASHNSINVVR-------------G--PVNVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTCSEEECCSSCC---------SEEECCTTCSEEECCSSCCCEEE-------------C--SCCSCCCEEECCSSCCCC
T ss_pred hhhhhhhhcccCcc---------ccccCCchhheeeccCCcccccc-------------c--ccCCCCCEEECCCCCCCC
Confidence 34444444433211 12345568899999998864221 1 123689999999999887
Q ss_pred cccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 331 NVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 331 ~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
+.++..+++|+.|++++|.+.+..|. ++.+++|+.|+|++|. +..++..+ ..+|+|+.|+++
T Consensus 247 ----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~~L~Ls 309 (597)
T 3oja_B 247 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLS 309 (597)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------SCCTTCCEEECC
T ss_pred ----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------ccCCCCcEEECC
Confidence 57788999999999999988777665 8889999999999987 44444322 268999999999
Q ss_pred CcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCch
Q 011151 410 DMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPIL 468 (492)
Q Consensus 410 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 468 (492)
+|. +.. +|..+..+++|+.|++++|. ++.+| +..+++|+.|++++|+.-
T Consensus 310 ~N~-l~~------i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 310 HNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCC-CCc------cCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 875 432 45566789999999999964 56665 667899999999999853
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=225.84 Aligned_cols=306 Identities=15% Similarity=0.085 Sum_probs=240.0
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
.+++++++.++.+..+|..++ .++++|++|++++|. +....+..|..+++|++|+++ ++.+..++.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEecCCchhhCChhHh---cccccCcEEECCCCc---ccccChhhccCCCCcCEEECC-------CCCCCcCCHH
Confidence 689999999999988776643 378999999999998 777666789999999999999 888888764
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.+.++++|++|++++|. +..+|.. +.++++|++|++++|.+....|..+..+++|++|++++|.+... .+..+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 58999999999999999 8888876 58899999999999995545566689999999999999977543 3567888
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... +.....|+.+.+....-.. ......++|+.|++++|.+++.
T Consensus 188 L~~L~l~~n~l~~--------~~~~~~L~~L~l~~n~l~~-------~~~~~~~~L~~L~l~~n~l~~~----------- 241 (390)
T 3o6n_A 188 LFHANVSYNLLST--------LAIPIAVEELDASHNSINV-------VRGPVNVELTILKLQHNNLTDT----------- 241 (390)
T ss_dssp CSEEECCSSCCSE--------EECCSSCSEEECCSSCCCE-------EECCCCSSCCEEECCSSCCCCC-----------
T ss_pred cceeecccccccc--------cCCCCcceEEECCCCeeee-------ccccccccccEEECCCCCCccc-----------
Confidence 9998887664432 2333445555554432211 0112347899999999997532
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFL 386 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 386 (492)
..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.........+++|++|++++|. +..++..+
T Consensus 242 ---~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 314 (390)
T 3o6n_A 242 ---AWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ- 314 (390)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-
T ss_pred ---HHHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc-
Confidence 346778999999999999887 54788899999999999999776654446789999999999997 55554332
Q ss_pred CCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCc
Q 011151 387 GVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 387 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
..+++|+.|+++++. ++.+. +..+++|+.|++++|+.-
T Consensus 315 -----------~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 315 -----------PQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp -----------HHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred -----------cccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCcc
Confidence 278999999999986 54432 447899999999997543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=244.09 Aligned_cols=349 Identities=14% Similarity=0.104 Sum_probs=250.6
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccc-ccccc-Cchh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKN-FIKKI-PTNI 149 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l-~~~~ 149 (492)
+.++.+++++..+|. + .+++++|++++|. +....|..|..+++|++|+++ ++ ....+ |..+
T Consensus 7 ~~~dcs~~~L~~vP~-l------p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs-------~n~~~~~i~~~~f 69 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V------LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELG-------SQYTPLTIDKEAF 69 (844)
T ss_dssp EEEEESCCCSSCCCS-S------CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEEC-------TTCCCCEECTTTT
T ss_pred eEEEccCCCCCCCCC-C------CCCcCEEECCCCc---CCccChhHCcccccCeEEeCC-------CCCCccccCHHHh
Confidence 466677778888776 4 3789999999998 778778889999999999999 55 56666 6779
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccccc--ccCCCCCcEEecCCCccccccc-cccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQG--IGKLRKLMYLDNDDTWFLRYLP-VGIGELIN 226 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 226 (492)
.++++|++|+|++|.+....|..+.++++|++|++++|......|.. ++++++|++|++++|.+....+ ..+.++++
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 99999999999999944445888999999999999999966556655 8899999999999998866544 56899999
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccC------CcceEecccccCCCCchhhH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK------NLVELGLHFDRLRDGDEEQA 300 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~l~~~~~~~~ 300 (492)
|+.|+++.+......+..+..+.. +.|+.+.+....-..... ..+..++ .|+.|++++|.+++......
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n~l~~~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQG-KTLSFFSLAANSLYSRVS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHH-CSSCCCEECCSBSCCCCC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCEEECCCCcCCeeCHHHcccccC-CccceEECCCCccccccc----cchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 999999988765422333333321 567776665432211100 1122333 49999999987643221111
Q ss_pred hhh------------------------hHHHHhhhcCC--CCCccEEEEeecCCCccccCchhhhccccccEEEEecccC
Q 011151 301 RRR------------------------ESERLLEALGP--PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 301 ~~~------------------------~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
... ........+.. .++|+.|++++|.+.. +++..+..+++|+.|++++|.+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcC
Confidence 000 00000111222 3689999999998877 5577888999999999999988
Q ss_pred CCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCc
Q 011151 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRL 433 (492)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 433 (492)
....+. +..+++|++|++++|. +..+.... ...+++|+.|+++++. +..+ .+..+..+++|
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~l~~L 364 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKNH-IAII-----QDQTFKFLEKL 364 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSCC-CCCC-----CSSCSCSCCCC
T ss_pred CCCChHHhcCCCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCCC-CCcc-----ChhhhcCCCCC
Confidence 776665 8889999999999987 33332222 2378899999998874 4332 23456789999
Q ss_pred ceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 434 SFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 434 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++| .++.++. +++|+.|++++|..
T Consensus 365 ~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 365 QTLDLRDN-ALTTIHF----IPSIPDIFLSGNKL 393 (844)
T ss_dssp CEEEEETC-CSCCCSS----CCSCSEEEEESCCC
T ss_pred CEEECCCC-CCCcccC----CCCcchhccCCCCc
Confidence 99999995 5555543 77888888888753
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=229.81 Aligned_cols=297 Identities=19% Similarity=0.133 Sum_probs=199.8
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
..++.|+++++.+..++ ..+ .++++|+.|++++|. +....|..|..+++|++|+|+ ++.+..+|.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF----ASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR-------SNRLKLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT----TTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCSCCT
T ss_pred CCCcEEECCCCccceECHhHc----cCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC-------CCcCCccCc
Confidence 68999999999998754 344 489999999999998 788778889999999999999 899999886
Q ss_pred h-hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
. +.++++|++|++++|.+....|..+.++++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 5 789999999999999944445667899999999999999955555678999999999999999886555556889999
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+..... ....+..++.|+.+.+.......... .......+|+.|++++|.++...
T Consensus 178 L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~---------- 240 (477)
T 2id5_A 178 LIVLRLRHLNINAI---RDYSFKRLYRLKVLEISHWPYLDTMT----PNCLYGLNLTSLSITHCNLTAVP---------- 240 (477)
T ss_dssp CCEEEEESCCCCEE---CTTCSCSCTTCCEEEEECCTTCCEEC----TTTTTTCCCSEEEEESSCCCSCC----------
T ss_pred CcEEeCCCCcCcEe---ChhhcccCcccceeeCCCCccccccC----cccccCccccEEECcCCcccccC----------
Confidence 99999988765431 11233444455555555433221110 11112235666666666543221
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEF 385 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~ 385 (492)
...+..+++|+.|++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.|++++|. ++.++...
T Consensus 241 --~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 315 (477)
T 2id5_A 241 --YLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV 315 (477)
T ss_dssp --HHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGG
T ss_pred --HHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhH
Confidence 1234455566666666665554 4344455566666666666655444333 5555666666666554 33333322
Q ss_pred cCCcCCCCCCcccccccccceeccCcc
Q 011151 386 LGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 386 ~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+. .+++|+.|++.+++
T Consensus 316 ~~-----------~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 316 FH-----------SVGNLETLILDSNP 331 (477)
T ss_dssp BS-----------CGGGCCEEECCSSC
T ss_pred cC-----------CCcccCEEEccCCC
Confidence 22 45556666655544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=237.80 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=70.5
Q ss_pred cceEEEEEEeecCCCcccc-cccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVPIS-IWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
++++.++++++.+..++.. +. ++++|+.|++++|. +.+..|..|+.+++|++|+++ ++.+... |
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~----~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 138 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFA----FCTNLTELHLMSNS---IQKIKNNPFVKQKNLITLDLS-------HNGLSSTKL 138 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT----TCTTCSEEECCSSC---CCCCCSCTTTTCTTCCEEECC-------SSCCSCCCC
T ss_pred cCcCEEECCCCccCccChhhhc----cCCCCCEEECCCCc---cCccChhHccccCCCCEEECC-------CCcccccCc
Confidence 5778888888877766543 33 77888888888877 566555667778888888887 6666554 3
Q ss_pred chhhccCcCCEEEccCCCCccccch-hhh--cCCCCCeeecCccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPE-TLC--ELYNLERLNITSCN 188 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~-~~~--~l~~L~~L~l~~~~ 188 (492)
..+.++++|++|++++|. +..++. .+. .+++|++|++++|.
T Consensus 139 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 139 GTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred hhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 456677777777777777 444433 222 34666666666665
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=223.56 Aligned_cols=312 Identities=21% Similarity=0.244 Sum_probs=199.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+++++.|.+.++. +.. +|. +..+++|++|+++ ++.+..++. +.++++|++|++++|. +..++. +
T Consensus 44 ~l~~l~~L~l~~~~---i~~-l~~-~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLG---IKS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhccccEEecCCCC---Ccc-Ccc-hhhhcCCCEEECC-------CCccCCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 56889999999998 555 554 7889999999999 889988877 8999999999999999 777776 9
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
.++++|++|++++|. +..++. +..+++|++|++++|.+.. ++ .+..+++|+.|.+... .. ....+..++.
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~-~~-----~~~~~~~l~~ 178 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ-VT-----DLKPLANLTT 178 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES-CC-----CCGGGTTCTT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc-cc-----CchhhccCCC
Confidence 999999999999998 666665 8999999999999997644 33 4778888888887532 21 2233566666
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
|+.+++....-... ..+..+++|+.|++++|.+.+... +..+++|+.|++++|.+.. +
T Consensus 179 L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~--~ 236 (466)
T 1o6v_A 179 LERLDISSNKVSDI------SVLAKLTNLESLIATNNQISDITP--------------LGILTNLDELSLNGNQLKD--I 236 (466)
T ss_dssp CCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCCC--C
T ss_pred CCEEECcCCcCCCC------hhhccCCCCCEEEecCCccccccc--------------ccccCCCCEEECCCCCccc--c
Confidence 77666655432211 235666777777777776543211 2334555555555555544 2
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCc----------CCCCCCcccccccc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVE----------SDTDGSSIIAFPKL 403 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~----------~~~~~~~~~~l~~L 403 (492)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|. +..++. +.... ..........+++|
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNL 311 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred --hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCC
Confidence 234455555555555554333222 4444555555555443 211111 00000 00000012256666
Q ss_pred cceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 404 KHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 404 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++|. +... .| +..+++|+.|++++| .++.++ .+..+++|+.|++++|..
T Consensus 312 ~~L~L~~n~-l~~~-----~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 312 TYLTLYFNN-ISDI-----SP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SEEECCSSC-CSCC-----GG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CEEECcCCc-CCCc-----hh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 666666653 3222 11 446778888888775 455553 566788888888888764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=222.02 Aligned_cols=206 Identities=17% Similarity=0.135 Sum_probs=131.1
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.++++++.+..+| .+. .+++|+.|++++|. +.+ +| ++.+++|++|+++ ++.+..++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~----~l~~L~~L~Ls~n~---l~~-~~--~~~l~~L~~L~Ls-------~N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIE----KLTGLTKLICTSNN---ITT-LD--LSQNTNLTYLACD-------SNKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGG----GCTTCSEEECCSSC---CSC-CC--CTTCTTCSEEECC-------SSCCSCCC--
T ss_pred CCCCEEEccCCCcccCh-hhc----ccCCCCEEEccCCc---CCe-Ec--cccCCCCCEEECc-------CCCCceee--
Confidence 57778888877777654 343 77788888888877 555 33 6777778888887 77777764
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|++++|...+.+ .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 6777788888888887 66665 6777888888888877 44443 677778888888877544444 356677777
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|+++.+.... . . +..++.|+.+.+....-.. ..+..+++|+.|++++|.+++.
T Consensus 174 ~L~ls~n~l~~--l---~-l~~l~~L~~L~l~~N~l~~-------~~l~~l~~L~~L~Ls~N~l~~i------------- 227 (457)
T 3bz5_A 174 TLDCSFNKITE--L---D-VSQNKLLNRLNCDTNNITK-------LDLNQNIQLTFLDCSSNKLTEI------------- 227 (457)
T ss_dssp EEECCSSCCCC--C---C-CTTCTTCCEEECCSSCCSC-------CCCTTCTTCSEEECCSSCCSCC-------------
T ss_pred EEECCCCccce--e---c-cccCCCCCEEECcCCcCCe-------eccccCCCCCEEECcCCccccc-------------
Confidence 77777665443 1 1 3344444444443322111 0245556666666666664321
Q ss_pred hhhcCCCCCccEEEEeecCCCc
Q 011151 309 LEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
+ +..+++|++|++++|.+..
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSC
T ss_pred C--ccccCCCCEEEeeCCcCCC
Confidence 1 4455666666666666555
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-27 Score=238.26 Aligned_cols=344 Identities=15% Similarity=0.121 Sum_probs=230.7
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l 152 (492)
.+.+++.+..+|..+. +.|++|++++|. +.+..|..|..+++|++|+++ ++.+..++ ..+.++
T Consensus 10 c~~~~~~l~~ip~~~~------~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT------AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILK-------SSRINTIEGDAFYSL 73 (549)
T ss_dssp EECTTSCCSSCCSCCC------TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECT-------TSCCCEECTTTTTTC
T ss_pred EECCCCccccccccCC------CCccEEECcCCc---cCccChhhhhcCCcccEEECC-------CCCcCccChhhcccc
Confidence 4555667777777553 789999999998 777677889999999999999 88888876 569999
Q ss_pred CcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccc-ccccccccccc
Q 011151 153 LHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRR 229 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 229 (492)
++|++|++++|. +..++. .++++++|++|++++|.+.. ..|..++++++|++|++++|...+.+| ..+..+++|++
T Consensus 74 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 74 GSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 999999999999 666655 49999999999999999443 456789999999999999998556665 57899999999
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhh----------
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQ---------- 299 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~---------- 299 (492)
|++..+......+ ..+..++.|+.+.+..... .... ...+..+++|+.|++++|.+++.....
T Consensus 153 L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 153 LEIKALSLRNYQS---QSLKSIRDIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp EEEEETTCCEECT---TTTTTCSEEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred eeccCCcccccCh---hhhhccccCceEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 9999887664223 3344455555555544321 1111 112345677777777777665431000
Q ss_pred ---------HhhhhHHHHhhhcCC--------------------------------------------------------
Q 011151 300 ---------ARRRESERLLEALGP-------------------------------------------------------- 314 (492)
Q Consensus 300 ---------~~~~~~~~~~~~l~~-------------------------------------------------------- 314 (492)
........+...+..
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 000001111111111
Q ss_pred ---CCCccEEEEeecCCCccccCchhh-hccccccEEEEecccCCCcCC----CCCCCCccceeeccccccceeecc--c
Q 011151 315 ---PPNLKELVIDEYRGRRNVVPRNWV-MSLTNLRALLLKNCRNCEHLP----PLGKLPSLESLYIEGMQSVKRVGN--E 384 (492)
Q Consensus 315 ---~~~L~~L~l~~~~~~~~~l~~~~~-~~l~~L~~L~L~~~~~~~~~~----~l~~l~~L~~L~l~~~~~l~~~~~--~ 384 (492)
.++|++|++++|.+.. + |..+ ..+++|+.|++++|.+.+..+ .++.+++|++|++++|. ++.++. .
T Consensus 306 ~~~~~~L~~L~l~~n~l~~--i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 381 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFL--V-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGE 381 (549)
T ss_dssp HHHSTTCCEEEEESSCCCC--C-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHH
T ss_pred hhhcccceEEEeccCcccc--C-CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchh
Confidence 1345666666666554 5 4433 467778888887777665432 25667778888887776 333321 1
Q ss_pred ccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeC
Q 011151 385 FLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGR 464 (492)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 464 (492)
. +..+++|++|++++|. ++. +|..+..+++|+.|++++| .++.+|..+ .++|++|++++
T Consensus 382 ~-----------~~~l~~L~~L~Ls~N~-l~~------lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~--~~~L~~L~Ls~ 440 (549)
T 2z81_A 382 I-----------LLTLKNLTSLDISRNT-FHP------MPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSN 440 (549)
T ss_dssp H-----------GGGCTTCCEEECTTCC-CCC------CCSCCCCCTTCCEEECTTS-CCSCCCTTS--CTTCSEEECCS
T ss_pred h-----------hhcCCCCCEEECCCCC-Ccc------CChhhcccccccEEECCCC-Ccccccchh--cCCceEEECCC
Confidence 1 2267788888887763 432 4555667788888888885 466666544 36788888888
Q ss_pred CC
Q 011151 465 CP 466 (492)
Q Consensus 465 c~ 466 (492)
|.
T Consensus 441 N~ 442 (549)
T 2z81_A 441 NN 442 (549)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=232.27 Aligned_cols=306 Identities=15% Similarity=0.085 Sum_probs=240.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
.+++.+++.++.+..+|..++ .++++|+.|++++|. +.+..|..|..+++|++|+|+ ++.+..+|.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-------FNAIRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECC-------CCcCCCCCHH
Confidence 578899999999888776654 378999999999998 778677789999999999999 888888775
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.+.++++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++.+++|++|++++|.+... .+..+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhh
Confidence 47999999999999999 7888876 58999999999999995555666799999999999999977543 3566788
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... +.....|+.+.+....-.. . .....++|+.|++++|.+++.
T Consensus 194 L~~L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~~-~------~~~~~~~L~~L~L~~n~l~~~----------- 247 (597)
T 3oja_B 194 LFHANVSYNLLST--------LAIPIAVEELDASHNSINV-V------RGPVNVELTILKLQHNNLTDT----------- 247 (597)
T ss_dssp CSEEECCSSCCSE--------EECCTTCSEEECCSSCCCE-E------ECSCCSCCCEEECCSSCCCCC-----------
T ss_pred hhhhhcccCcccc--------ccCCchhheeeccCCcccc-c------ccccCCCCCEEECCCCCCCCC-----------
Confidence 9998887664432 2333445555554432211 0 011236899999999997532
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFL 386 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 386 (492)
..+..+++|+.|++++|.+.. ++|..+..+++|+.|+|++|.+.........+++|+.|+|++|. +..++..+
T Consensus 248 ---~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~- 320 (597)
T 3oja_B 248 ---AWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ- 320 (597)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-
T ss_pred ---hhhccCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccc-
Confidence 456778999999999999887 54788999999999999999877654447779999999999997 44454332
Q ss_pred CCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCc
Q 011151 387 GVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 387 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
..+++|+.|++++|. +..+. +..+++|+.|++++|+.-
T Consensus 321 -----------~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 321 -----------PQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp -----------HHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEE
T ss_pred -----------ccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCCC
Confidence 278999999999986 44432 447899999999997653
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=234.01 Aligned_cols=362 Identities=16% Similarity=0.100 Sum_probs=234.6
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
..+++|++++|.+..++. ++. ++++|++|++++|. ++...+++|.++++|++|+|+ +|.+..+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~----~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls-------~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF----SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-------GNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECG
T ss_pred cCCCEEEeeCCCCCCCCHHHHh----CCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEcc-------CCcCCCCCH
Confidence 689999999999988664 444 89999999999998 888677889999999999999 899999885
Q ss_pred -hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCCCCCcEEecCCCccccccccccccc
Q 011151 148 -NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 148 -~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
.|.++++|++|++++|. +..+|. .++++++|++|++++|.+.. ..|..++.+++|++|++++|.+....+..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 48999999999999999 777765 48999999999999998443 467788999999999999997754444333222
Q ss_pred ccccc---------------------------cceEEeec-------------------------cc-------------
Q 011151 225 INLRR---------------------------VTKFVVGG-------------------------GY------------- 239 (492)
Q Consensus 225 ~~L~~---------------------------L~l~~~~~-------------------------~~------------- 239 (492)
.+++. +.+..+.. ..
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 11110 00000000 00
Q ss_pred --------------------CCCc----------------------Ccc-------------------------------
Q 011151 240 --------------------DRAR----------------------SLG------------------------------- 246 (492)
Q Consensus 240 --------------------~~~~----------------------~~~------------------------------- 246 (492)
.... .+.
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 0000 000
Q ss_pred ---------ccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchh----------hHh--hhhH
Q 011151 247 ---------SLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEE----------QAR--RRES 305 (492)
Q Consensus 247 ---------~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~----------~~~--~~~~ 305 (492)
....++.|+.+.+..... . ...........+.+|+.+++..+........ ... ....
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l-~-~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGL-S-FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCC-B-EEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccCCCCcccccccccccchhhcccc-c-cccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 000111122221111100 0 0000011222334444444443321100000 000 0000
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc-CCC-CCCCCccceeeccccccceeecc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH-LPP-LGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~-~~~-l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
......+..+++++.++++.|.... .++..+..+++|+.|++++|..... .|. +..+++|++|+|++|. ++.++.
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~ 511 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP 511 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT
T ss_pred ccccccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh
Confidence 1112234566788888888888766 5466777889999999998875543 343 7889999999999997 555544
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCC-CCCCeEEE
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQK-TTLQKLLI 462 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l-~~L~~L~l 462 (492)
..++ .+++|+.|+++++. ++.+ .|..+..+++|+.|++++|...+..|..+.++ ++|+.|++
T Consensus 512 ~~f~-----------~l~~L~~L~Ls~N~-l~~l-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 512 TAFN-----------SLSSLQVLNMSHNN-FFSL-----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TTTT-----------TCTTCCEEECTTSC-CCBC-----CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred HHHc-----------CCCCCCEEECCCCc-CCCC-----ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 3332 78899999999864 4433 34567789999999999965444456677777 68999999
Q ss_pred eCCCc
Q 011151 463 GRCPI 467 (492)
Q Consensus 463 ~~c~~ 467 (492)
++||.
T Consensus 575 ~~Np~ 579 (635)
T 4g8a_A 575 TQNDF 579 (635)
T ss_dssp TTCCB
T ss_pred eCCCC
Confidence 99885
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=220.47 Aligned_cols=300 Identities=19% Similarity=0.171 Sum_probs=230.2
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.+ +| .+..+++|++|+++ ++.+..+| +..+++|++|++++|. +..++ +
T Consensus 40 ~l~~L~~L~Ls~n~---l~~-~~-~l~~l~~L~~L~Ls-------~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSS---ITD-MT-GIEKLTGLTKLICT-------SNNITTLD--LSQNTNLTYLACDSNK-LTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSC---CCC-CT-TGGGCTTCSEEECC-------SSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--C
T ss_pred HcCCCCEEEccCCC---ccc-Ch-hhcccCCCCEEEcc-------CCcCCeEc--cccCCCCCEEECcCCC-Cceee--c
Confidence 78999999999998 666 46 48999999999999 88898886 8899999999999999 77775 8
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
+++++|++|++++|. +..+| ++.+++|++|++++|.+.. + .+..+++|+.|++..+..... + .+..++.
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~----~-~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITK----L-DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCC----C-CCTTCTT
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccc----c-ccccCCc
Confidence 899999999999998 55665 8899999999999998755 3 378899999999988754431 1 3555667
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
|+.+.+....-.. ..+..+++|+.|++++|.+++. .+..+++|++|++++|.+.. +
T Consensus 172 L~~L~ls~n~l~~-------l~l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls~N~l~~--i 227 (457)
T 3bz5_A 172 LTTLDCSFNKITE-------LDVSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCSSNKLTE--I 227 (457)
T ss_dssp CCEEECCSSCCCC-------CCCTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECCSSCCSC--C
T ss_pred CCEEECCCCccce-------eccccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECcCCcccc--c
Confidence 7776665543211 1267889999999999997532 36778999999999999988 7
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCcc----------ceeeccccccceeecccccCCcCCCCCCcccccccc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSL----------ESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKL 403 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L----------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L 403 (492)
| +..+++|+.|++++|.+.+.. .+.+++| +.|++++|..+..++ ...+++|
T Consensus 228 -p--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------~~~l~~L 288 (457)
T 3bz5_A 228 -D--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------AEGCRKI 288 (457)
T ss_dssp -C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------CTTCTTC
T ss_pred -C--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------ccccccC
Confidence 5 778999999999999876643 3334444 455555555443333 2278999
Q ss_pred cceeccCcccccccccCcc-c-cccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCc
Q 011151 404 KHLKFYDMEELEEWDFGTA-I-KGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 404 ~~L~l~~~~~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+.|++++|..+..+..... + .-.+..+++|+.|++++| .++.++ +.++++|+.|++++|..
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 9999999876655442100 0 012557789999999884 566674 88899999999998863
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=208.32 Aligned_cols=245 Identities=18% Similarity=0.174 Sum_probs=144.3
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cch
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTN 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~ 148 (492)
.++.+++.++.+..+|..+. +.++.|++++|. +.+..+..|..+++|++|+++ ++.+..+ |..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP------PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILI-------NNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC------TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC-------SSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC------CCCeEEECCCCc---CCEeChhhhccCCCCCEEECC-------CCcCCeeCHHH
Confidence 45556666666666555432 566777777776 555445556777777777777 6666665 556
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc--ccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR--YLPVGIGELIN 226 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~ 226 (492)
+.++++|++|++++|. ++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 6677777777777776 666665543 567777777776333333446667777777777765532 33444555555
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... ++. .+ .++|+.|++++|.+++.
T Consensus 173 L~~L~l~~n~l~~-------------------------l~~-------~~--~~~L~~L~l~~n~l~~~----------- 207 (330)
T 1xku_A 173 LSYIRIADTNITT-------------------------IPQ-------GL--PPSLTELHLDGNKITKV----------- 207 (330)
T ss_dssp CCEEECCSSCCCS-------------------------CCS-------SC--CTTCSEEECTTSCCCEE-----------
T ss_pred cCEEECCCCcccc-------------------------CCc-------cc--cccCCEEECCCCcCCcc-----------
Confidence 5555544332211 110 00 14667777777664321
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeec
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
.+..+..+++|++|++++|.+.. +++.++..+++|+.|++++|.+......+..+++|++|++++|. ++.++
T Consensus 208 -~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 208 -DAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp -CTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred -CHHHhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccC
Confidence 23345566677777777776665 43456666777777777777555333336666777777777665 44333
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=209.97 Aligned_cols=238 Identities=22% Similarity=0.230 Sum_probs=148.9
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cch
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTN 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~ 148 (492)
.++.+.+.++.+..+|..+. ++++.|++++|. +....+..|..+++|++|+++ ++.+..+ |..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~------~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS------PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLV-------NNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC------TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC------CCCeEEECCCCc---CCccCHhHhhCCCCCcEEECC-------CCccCccCHhH
Confidence 45667777777776665543 577777777776 666556667777777777777 6677665 456
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccc--cccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLR--YLPVGIGELI 225 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~ 225 (492)
+.++++|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.+.. ..+..+..+
T Consensus 98 ~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 7777777777777777 667766554 677777777777 444443 46777777777777776532 334444444
Q ss_pred cccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 226 NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
+|+.|++..+.... ++. .+ .++|+.|++++|.+++.
T Consensus 173 ~L~~L~l~~n~l~~-------------------------l~~-------~~--~~~L~~L~l~~n~i~~~---------- 208 (332)
T 2ft3_A 173 KLNYLRISEAKLTG-------------------------IPK-------DL--PETLNELHLDHNKIQAI---------- 208 (332)
T ss_dssp CCSCCBCCSSBCSS-------------------------CCS-------SS--CSSCSCCBCCSSCCCCC----------
T ss_pred ccCEEECcCCCCCc-------------------------cCc-------cc--cCCCCEEECCCCcCCcc----------
Confidence 55555554443221 110 00 14666677777765432
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
.+..+..+++|++|++++|.+.. +++.++..+++|+.|++++|.+......+..+++|++|++++|.
T Consensus 209 --~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 209 --ELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp --CTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred --CHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 12345566677777777776666 54556667777777777777555322336667777777777665
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=205.83 Aligned_cols=248 Identities=19% Similarity=0.190 Sum_probs=171.7
Q ss_pred cceEEEEEEeecCCC---cccccccCccCCCCceEEEecc-CCccccccccchhhccCCeeeEEecchhhhhhcccccc-
Q 011151 69 KKILHLLLTLHRGAS---VPISIWGNVKGLRGLRSLLVES-DDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIK- 143 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~- 143 (492)
.+++.++++++.+.. +|..+. ++++|++|++++ |. +.+.+|..|..+++|++|+++ ++.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~----~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls-------~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT-------HTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEE-------EECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHh----CCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECc-------CCeeCC
Confidence 467788888877763 455444 778888888874 65 666677777778888888887 66665
Q ss_pred ccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCC-CCcEEecCCCccccccccccc
Q 011151 144 KIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLR-KLMYLDNDDTWFLRYLPVGIG 222 (492)
Q Consensus 144 ~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~l~ 222 (492)
.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+...+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 5677777788888888888873346777777788888888888875557777777777 788888888777666676666
Q ss_pred ccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhh
Q 011151 223 ELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARR 302 (492)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 302 (492)
.++ |+.|+++.+..... . + ..+..+++|+.|++++|.++..
T Consensus 196 ~l~-L~~L~Ls~N~l~~~---~---------------------~-------~~~~~l~~L~~L~L~~N~l~~~------- 236 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGD---A---------------------S-------VLFGSDKNTQKIHLAKNSLAFD------- 236 (313)
T ss_dssp GCC-CSEEECCSSEEEEC---C---------------------G-------GGCCTTSCCSEEECCSSEECCB-------
T ss_pred CCc-ccEEECcCCcccCc---C---------------------C-------HHHhcCCCCCEEECCCCceeee-------
Confidence 665 66666655443320 0 0 2345566777788877775321
Q ss_pred hhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeecccccc
Q 011151 303 RESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQS 377 (492)
Q Consensus 303 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 377 (492)
+..+..+++|++|++++|.+... + |.++..+++|+.|++++|.+.+.+|....+++|+.|++++|+.
T Consensus 237 ------~~~~~~l~~L~~L~Ls~N~l~~~-~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 237 ------LGKVGLSKNLNGLDLRNNRIYGT-L-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp ------GGGCCCCTTCCEEECCSSCCEEC-C-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred ------cCcccccCCCCEEECcCCcccCc-C-ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 22255667788888877777631 4 6777777788888888777776777667777777777777763
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=203.42 Aligned_cols=231 Identities=26% Similarity=0.362 Sum_probs=137.5
Q ss_pred CCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCC
Q 011151 122 LTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLR 201 (492)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 201 (492)
.++++.|+++ ++.+..+|..+.++++|++|++++|. +..+|..++++++|++|++++|. +..+|..+++++
T Consensus 80 ~~~l~~L~L~-------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELR-------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEE-------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred ccceeEEEcc-------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 4567777777 66777777767777777777777777 55777767777777777777776 446676677777
Q ss_pred CCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCC
Q 011151 202 KLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKN 281 (492)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 281 (492)
+|++|++++|...+.+|..+... . .. ..+.++++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~---------------------------~------------~~-------~~~~~l~~ 184 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLAST---------------------------D------------AS-------GEHQGLVN 184 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEE---------------------------C-------------C-------CCEEESTT
T ss_pred CCCEEECCCCCCccccChhHhhc---------------------------c------------ch-------hhhccCCC
Confidence 77777777765555554433210 0 00 11344556
Q ss_pred cceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-
Q 011151 282 LVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP- 360 (492)
Q Consensus 282 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~- 360 (492)
|+.|++++|.++ .++..+..+++|++|++++|.+.. + |..+..+++|+.|++++|...+.+|.
T Consensus 185 L~~L~L~~n~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 185 LQSLRLEWTGIR-------------SLPASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp CCEEEEEEECCC-------------CCCGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred CCEEECcCCCcC-------------cchHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCEEECcCCcchhhhHHH
Confidence 666666666542 122334444555555555555544 4 33444555555555555544444443
Q ss_pred CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 361 LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 361 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
++.++ +|+.|++++|..+ +.+|..+..+++|+.|+|++
T Consensus 249 ~~~l~------------------------------------~L~~L~L~~n~~~------~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 249 FGGRA------------------------------------PLKRLILKDCSNL------LTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp TTCCC------------------------------------CCCEEECTTCTTC------CBCCTTGGGCTTCCEEECTT
T ss_pred hcCCC------------------------------------CCCEEECCCCCch------hhcchhhhcCCCCCEEeCCC
Confidence 44444 4555544444322 12334455777788888888
Q ss_pred CCCcccCCcccCCCCCCCeEEEeCC
Q 011151 441 CCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 441 c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
|+.++.+|..+.++++|+.+++..+
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCchhhccHHHhhccCceEEeCCHH
Confidence 7777778877777888887777744
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=221.75 Aligned_cols=147 Identities=22% Similarity=0.197 Sum_probs=123.4
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l 152 (492)
++-++.++..+|..+. +.++.|++++|. ++...+..|..+++|++|+|+ ++.+..+++ .|.++
T Consensus 36 ~~c~~~~l~~vP~~lp------~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls-------~N~i~~i~~~~f~~L 99 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSL 99 (635)
T ss_dssp EECTTSCCSSCCSSSC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TCCCCEECTTTTTTC
T ss_pred EECCCCCcCccCCCCC------cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECC-------CCcCCCcChhHhcCC
Confidence 3344446777787654 589999999998 888667789999999999999 999999875 58999
Q ss_pred CcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccc-cccccccccccccc
Q 011151 153 LHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLR-YLPVGIGELINLRR 229 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 229 (492)
++|++|+|++|. ++.+|. .+.++++|++|++++|. +..+| ..++++++|++|++++|.+.. ..|..+..+++|++
T Consensus 100 ~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 100 SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp TTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 999999999999 888875 47899999999999999 55555 458999999999999998754 46777889999999
Q ss_pred cceEEeecc
Q 011151 230 VTKFVVGGG 238 (492)
Q Consensus 230 L~l~~~~~~ 238 (492)
|+++.+...
T Consensus 178 L~L~~N~l~ 186 (635)
T 4g8a_A 178 LDLSSNKIQ 186 (635)
T ss_dssp EECCSSCCC
T ss_pred hcccCcccc
Confidence 998877554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=197.54 Aligned_cols=293 Identities=18% Similarity=0.165 Sum_probs=202.5
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCcccc-chhhh
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKL-PETLC 174 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~l-p~~~~ 174 (492)
+++.++++++. +.. +|..+ .+.|++|+++ ++.+..++. .+.++++|++|++++|. +..+ |..+.
T Consensus 32 ~l~~l~~~~~~---l~~-lp~~~--~~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLG---LEK-VPKDL--PPDTALLDLQ-------NNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSC---CCS-CCCSC--CTTCCEEECC-------SSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCC---ccc-cCccC--CCCCeEEECC-------CCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 67788887776 444 44323 2568888888 777877765 57888888888888888 5544 66788
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++++|++|++++|. +..+|..+. ++|++|++++|.+....+..+..+++|+.|++..+.... ..
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~----- 161 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------SG----- 161 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--------GG-----
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc--------cC-----
Confidence 88888888888887 566776554 688888888887765555557777777777766553321 00
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
.....+..+++|+.|++++|.++..+ ..+ .++|++|++++|.+.. ++
T Consensus 162 ----------------~~~~~~~~l~~L~~L~l~~n~l~~l~-------------~~~--~~~L~~L~l~~n~l~~--~~ 208 (330)
T 1xku_A 162 ----------------IENGAFQGMKKLSYIRIADTNITTIP-------------QGL--PPSLTELHLDGNKITK--VD 208 (330)
T ss_dssp ----------------BCTTGGGGCTTCCEEECCSSCCCSCC-------------SSC--CTTCSEEECTTSCCCE--EC
T ss_pred ----------------cChhhccCCCCcCEEECCCCccccCC-------------ccc--cccCCEEECCCCcCCc--cC
Confidence 00034667888999999998865332 122 2789999999998877 55
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEE 413 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 413 (492)
+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|. +..++..+ ..+++|+.|+++++.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L~l~~N~- 274 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL------------ADHKYIQVVYLHNNN- 274 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTT------------TTCSSCCEEECCSSC-
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhh------------ccCCCcCEEECCCCc-
Confidence 77888999999999999987766553 7788999999999987 44444332 278899999998875
Q ss_pred ccccccCcccc-ccccCCCCcceEeecCCCCcc--cCCcccCCCCCCCeEEEeCCC
Q 011151 414 LEEWDFGTAIK-GEIIIMPRLSFLEISGCCKLK--ALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 414 l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~--~l~~~l~~l~~L~~L~l~~c~ 466 (492)
++.+......+ ......++|+.|++++|+... ..|..+..+++++.+++++|.
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55543211100 011235788999999976532 234667778899999998873
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=199.72 Aligned_cols=292 Identities=17% Similarity=0.150 Sum_probs=208.7
Q ss_pred CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCcccc-chhhh
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKL-PETLC 174 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~l-p~~~~ 174 (492)
+++.++++++. +.. +|..+ .++|++|+++ ++.+..++ ..+.++++|++|++++|. +..+ |..+.
T Consensus 34 ~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLG---LKA-VPKEI--SPDTTLLDLQ-------NNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSC---CSS-CCSCC--CTTCCEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCC---ccc-cCCCC--CCCCeEEECC-------CCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 68888888887 554 45433 3678999999 88888775 468889999999999998 5554 66788
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++++|++|++++|. +..+|..+. ++|++|++++|.+....+..+..+++|+.|++..+.... . +
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~---~-------- 163 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN--S---G-------- 163 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG--G---G--------
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc--C---C--------
Confidence 89999999999988 667776655 789999999987755444557788888888877664431 0 0
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
..+ ..+..+ +|+.|++++|.+++.+ ..+ .++|++|++++|.+.. ++
T Consensus 164 ---------~~~-------~~~~~l-~L~~L~l~~n~l~~l~-------------~~~--~~~L~~L~l~~n~i~~--~~ 209 (332)
T 2ft3_A 164 ---------FEP-------GAFDGL-KLNYLRISEAKLTGIP-------------KDL--PETLNELHLDHNKIQA--IE 209 (332)
T ss_dssp ---------SCT-------TSSCSC-CCSCCBCCSSBCSSCC-------------SSS--CSSCSCCBCCSSCCCC--CC
T ss_pred ---------CCc-------ccccCC-ccCEEECcCCCCCccC-------------ccc--cCCCCEEECCCCcCCc--cC
Confidence 000 123344 7888888888865432 222 2689999999999887 65
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEE 413 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 413 (492)
+..+..+++|+.|++++|.+....+. +..+++|++|++++|. ++.++..+ ..+++|+.|+++++.
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------------~~l~~L~~L~l~~N~- 275 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL------------PDLKLLQVVYLHTNN- 275 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG------------GGCTTCCEEECCSSC-
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh------------hcCccCCEEECCCCC-
Confidence 67788999999999999987776654 7889999999999987 55555432 278899999999875
Q ss_pred ccccccCcccccc-ccCCCCcceEeecCCCCc--ccCCcccCCCCCCCeEEEeCCC
Q 011151 414 LEEWDFGTAIKGE-IIIMPRLSFLEISGCCKL--KALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 414 l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l--~~l~~~l~~l~~L~~L~l~~c~ 466 (492)
++.+......+.. ...+++|+.|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5554422110100 112678999999998754 3345677889999999999885
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=202.41 Aligned_cols=250 Identities=19% Similarity=0.172 Sum_probs=199.3
Q ss_pred CCceEEEeccCCcccccc--ccchhhccCCeeeEEecchhhhhhcc-cccc-ccCchhhccCcCCEEEccCCCCccccch
Q 011151 96 RGLRSLLVESDDYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCK-NFIK-KIPTNIEKLLHLKYLSLCGQREIEKLPE 171 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~ 171 (492)
.+++.|+++++. +.+ .+|..+..+++|++|+++ + +.+. .+|..+.++++|++|++++|.+.+.+|.
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~l~~l~~L~~L~L~-------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGGGGGCTTCSEEEEE-------EETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC---ccCCcccChhHhCCCCCCeeeCC-------CCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 679999999998 776 688889999999999998 4 5554 6888899999999999999994458899
Q ss_pred hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccc-cccccceEEeecccCCCcCcccccc
Q 011151 172 TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELI-NLRRVTKFVVGGGYDRARSLGSLKK 250 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~ 250 (492)
.+.++++|++|++++|.+...+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++..+......
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--------- 190 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--------- 190 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC---------
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC---------
Confidence 999999999999999996668899999999999999999998778898898887 8898888766543200
Q ss_pred ccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 251 LNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 251 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
+ ..+..++ |+.|++++|.++ ...+..+..+++|+.|++++|.+..
T Consensus 191 ---------------~-------~~~~~l~-L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 191 ---------------P-------PTFANLN-LAFVDLSRNMLE------------GDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp ---------------C-------GGGGGCC-CSEEECCSSEEE------------ECCGGGCCTTSCCSEEECCSSEECC
T ss_pred ---------------C-------hHHhCCc-ccEEECcCCccc------------CcCCHHHhcCCCCCEEECCCCceee
Confidence 1 1233444 888999988853 2345667788999999999998875
Q ss_pred cccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 331 NVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 331 ~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
. +..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.....++.. ..+++|+.|++.
T Consensus 236 --~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------------~~l~~L~~l~l~ 299 (313)
T 1ogq_A 236 --D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------------GNLQRFDVSAYA 299 (313)
T ss_dssp --B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-------------TTGGGSCGGGTC
T ss_pred --e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-------------ccccccChHHhc
Confidence 4 34477889999999999988766665 788899999999998744444432 167888888888
Q ss_pred Cccccc
Q 011151 410 DMEELE 415 (492)
Q Consensus 410 ~~~~l~ 415 (492)
+++.+.
T Consensus 300 ~N~~lc 305 (313)
T 1ogq_A 300 NNKCLC 305 (313)
T ss_dssp SSSEEE
T ss_pred CCCCcc
Confidence 776543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=205.73 Aligned_cols=334 Identities=18% Similarity=0.149 Sum_probs=158.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCee-------------eEEecchhhh
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCL-------------RALKLEVRQR 135 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L-------------~~L~L~~~~~ 135 (492)
..++.+.++++.+..+|..+. ++++|+.|++++|. +.+.+|..++.+++| +.|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~----~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~---- 79 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE----NVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN---- 79 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT----
T ss_pred ccchhhhcccCchhhCChhHh----cccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEec----
Confidence 578889999999977887776 89999999999987 777788878877765 788888
Q ss_pred hhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc
Q 011151 136 WLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 136 ~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 215 (492)
++.+..+|.. .++|++|++++|. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+..
T Consensus 80 ---~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 80 ---NLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp ---TSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSS
T ss_pred ---CCccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCC
Confidence 7777777652 3577777777777 5556643 3556666666665 3333321 1456666666665532
Q ss_pred cccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCC
Q 011151 216 YLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDG 295 (492)
Q Consensus 216 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 295 (492)
+| .++.+++|+.|+++.+.... ++..+ ..|+.+.+....-.. . ..+..+++|+.|++++|.+++.
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~------~~L~~L~L~~n~l~~-l-----~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP------PSLEFIAAGNNQLEE-L-----PELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC------TTCCEEECCSSCCSS-C-----CCCTTCTTCCEEECCSSCCSSC
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc------ccccEEECcCCcCCc-C-----ccccCCCCCCEEECCCCcCCcC
Confidence 44 35556666666655554332 11111 123333332221100 0 0134445555555555543321
Q ss_pred chhh-------HhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccc
Q 011151 296 DEEQ-------ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLE 368 (492)
Q Consensus 296 ~~~~-------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~ 368 (492)
+... ........++ .+..+++|++|++++|.+.. + |. .+++|+.|++++|.+.+ +|.. +++|+
T Consensus 211 ~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l-~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~ 280 (454)
T 1jl5_A 211 PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--L-PD---LPPSLEALNVRDNYLTD-LPEL--PQSLT 280 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--C-CS---CCTTCCEEECCSSCCSC-CCCC--CTTCC
T ss_pred CCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--c-cc---cccccCEEECCCCcccc-cCcc--cCcCC
Confidence 1000 0000000111 24445555555555555544 4 32 22555555555554433 2221 35666
Q ss_pred eeeccccccceeecccccCCc--C--CCCCCccccc-ccccceeccCcccccccccCccccccccCCCCcceEeecCCCC
Q 011151 369 SLYIEGMQSVKRVGNEFLGVE--S--DTDGSSIIAF-PKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCK 443 (492)
Q Consensus 369 ~L~l~~~~~l~~~~~~~~~~~--~--~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 443 (492)
+|++++|. ++.++....... . ......+..+ ++|+.|+++++. ++. +|. .+++|+.|++++| .
T Consensus 281 ~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~------lp~---~~~~L~~L~L~~N-~ 348 (454)
T 1jl5_A 281 FLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIE------LPA---LPPRLERLIASFN-H 348 (454)
T ss_dssp EEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSC------CCC---CCTTCCEEECCSS-C
T ss_pred EEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccc------ccc---cCCcCCEEECCCC-c
Confidence 66666665 332221000000 0 0000001122 355555555542 222 222 3578889999885 5
Q ss_pred cccCCcccCCCCCCCeEEEeCCCc
Q 011151 444 LKALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 444 l~~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
++.+|. .+++|++|++++|+.
T Consensus 349 l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 349 LAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CSCCCC---CCTTCCEEECCSSCC
T ss_pred cccccc---hhhhccEEECCCCCC
Confidence 667876 478899999998864
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-26 Score=226.11 Aligned_cols=367 Identities=17% Similarity=0.090 Sum_probs=246.4
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhcccccccc-C
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~ 146 (492)
+++++++++++.+...+ +...+..+++|+.|++++|...... ..++..+..+++|++|+++ ++.+... +
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-------~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-------SNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-------TCCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-------CCcCChHHH
Confidence 68999999999887532 2212347899999999999832111 1356778889999999999 7777552 2
Q ss_pred ch-hhccC----cCCEEEccCCCCcc-----ccchhhhcCCCCCeeecCcccccccccccc-----cCCCCCcEEecCCC
Q 011151 147 TN-IEKLL----HLKYLSLCGQREIE-----KLPETLCELYNLERLNITSCNHLRELPQGI-----GKLRKLMYLDNDDT 211 (492)
Q Consensus 147 ~~-~~~l~----~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-----~~l~~L~~L~l~~~ 211 (492)
.. ...+. +|++|++++|. ++ .++..+..+++|++|++++|.+....+..+ ...++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 22 33455 79999999999 55 467788999999999999998443323222 23678999999999
Q ss_pred ccccc----ccccccccccccccceEEeecccCCCcCccccc-----cccccCCceEecCCCCCChhhhhHhhhcccCCc
Q 011151 212 WFLRY----LPVGIGELINLRRVTKFVVGGGYDRARSLGSLK-----KLNLLRECSIRGLGGVSDAGEARRAELEKKKNL 282 (492)
Q Consensus 212 ~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L 282 (492)
.+... ++..+..+++|++|+++.+.... ..+..+. ..+.|+.+.+..+.-.......+...+..+++|
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 87653 34556678999999998876543 1111221 244677777777644433333445667789999
Q ss_pred ceEecccccCCCCchhhHhhhhHHHHhhh-cCCCCCccEEEEeecCCCccc---cCchhhhccccccEEEEecccCCCcC
Q 011151 283 VELGLHFDRLRDGDEEQARRRESERLLEA-LGPPPNLKELVIDEYRGRRNV---VPRNWVMSLTNLRALLLKNCRNCEHL 358 (492)
Q Consensus 283 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~---l~~~~~~~l~~L~~L~L~~~~~~~~~ 358 (492)
++|++++|.+++. ....+... ...+++|++|++++|.+.... + +..+..+++|+.|++++|.+.+..
T Consensus 230 ~~L~Ls~n~l~~~--------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 230 RELALGSNKLGDV--------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp CEEECCSSBCHHH--------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHH
T ss_pred cEEeccCCcCChH--------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHH
Confidence 9999999985321 11222233 335789999999999876632 3 455667899999999999664321
Q ss_pred C----C--CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc-CCC
Q 011151 359 P----P--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII-IMP 431 (492)
Q Consensus 359 ~----~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~ 431 (492)
+ . ....++|++|++++|. +...+..... ..+..+++|++|+++++. +.+.... .+...+. ..+
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~~l~~~~~ 370 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNNR-LEDAGVR-ELCQGLGQPGS 370 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSSB-CHHHHHH-HHHHHHTSTTC
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCCc-cccccHH-HHHHHHcCCCC
Confidence 1 1 2234689999999987 3322111111 012256899999999874 5443211 0111121 267
Q ss_pred CcceEeecCCCCcc----cCCcccCCCCCCCeEEEeCCCc
Q 011151 432 RLSFLEISGCCKLK----ALPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 432 ~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~ 467 (492)
+|++|++++|..-. .+|..+..+++|++|++++|+.
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 99999999975432 5777777899999999999974
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=201.54 Aligned_cols=303 Identities=21% Similarity=0.208 Sum_probs=168.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.++++++.+..+|. ..++|+.|++++|. +.+ ++.. .++|++|+++ ++.+..+| .
T Consensus 91 ~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~---l~~-l~~~---~~~L~~L~L~-------~n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-------LPQSLKSLLVDNNN---LKA-LSDL---PPLLEYLGVS-------NNQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSC---CSC-CCSC---CTTCCEEECC-------SSCCSSCC-C
T ss_pred CCCCEEEccCCcCCcccc-------ccCCCcEEECCCCc---cCc-ccCC---CCCCCEEECc-------CCCCCCCc-c
Confidence 466666666666665442 23566777777665 333 2221 1467777777 66666666 4
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..+|.. ..+|++|++++|. +..+| .++++++|++|++++|.+.+ +|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---Cccc
Confidence 6677777777777776 5556543 2467777777776 44555 46677777777777775532 33322 3666
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|+++.+.... +..+..++.|+.+.+....-.. . -...++|+.|++++|.+++.+
T Consensus 219 ~L~l~~n~l~~-----lp~~~~l~~L~~L~l~~N~l~~-l-------~~~~~~L~~L~l~~N~l~~l~------------ 273 (454)
T 1jl5_A 219 SIVAGNNILEE-----LPELQNLPFLTTIYADNNLLKT-L-------PDLPPSLEALNVRDNYLTDLP------------ 273 (454)
T ss_dssp EEECCSSCCSS-----CCCCTTCTTCCEEECCSSCCSS-C-------CSCCTTCCEEECCSSCCSCCC------------
T ss_pred EEECcCCcCCc-----ccccCCCCCCCEEECCCCcCCc-c-------cccccccCEEECCCCcccccC------------
Confidence 66666664442 1124455555555554322110 0 012356777777777654321
Q ss_pred hhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCC
Q 011151 309 LEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGV 388 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 388 (492)
..+++|++|++++|.+.. + +. ..++|++|++++|.+.+ ++.+ .++|++|++++|. +..++.
T Consensus 274 ----~~~~~L~~L~ls~N~l~~--l-~~---~~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~-l~~lp~----- 334 (454)
T 1jl5_A 274 ----ELPQSLTFLDVSENIFSG--L-SE---LPPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK-LIELPA----- 334 (454)
T ss_dssp ----CCCTTCCEEECCSSCCSE--E-SC---CCTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC-CSCCCC-----
T ss_pred ----cccCcCCEEECcCCccCc--c-cC---cCCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc-cccccc-----
Confidence 113567777777776655 4 22 12567777777775543 2221 1477888887776 332221
Q ss_pred cCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcc--cCCcccCCC------------
Q 011151 389 ESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLK--ALPDLLLQK------------ 454 (492)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~l~~l------------ 454 (492)
.+++|+.|+++++. ++. +|. .+++|++|++++|...+ .+|..+..+
T Consensus 335 ----------~~~~L~~L~L~~N~-l~~------lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 335 ----------LPPRLERLIASFNH-LAE------VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp ----------CCTTCCEEECCSSC-CSC------CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred ----------cCCcCCEEECCCCc-ccc------ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 46789999988874 443 333 46889999999865544 567676666
Q ss_pred -CCCCeEEEeCCCc
Q 011151 455 -TTLQKLLIGRCPI 467 (492)
Q Consensus 455 -~~L~~L~l~~c~~ 467 (492)
++|+.|++++|+.
T Consensus 395 ~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 395 PQNLKQLHVETNPL 408 (454)
T ss_dssp --------------
T ss_pred cCcCCEEECCCCcC
Confidence 7899999998874
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=195.80 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=153.3
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
..+.++.|++++|. +.. +|..+..+++|++|+++ ++.+..+|..+.++++|++|++++|. +..+|..+
T Consensus 79 ~~~~l~~L~L~~n~---l~~-lp~~l~~l~~L~~L~L~-------~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVP---LPQ-FPDQAFRLSHLQHMTID-------AAGLMELPDTMQQFAGLETLTLARNP-LRALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSC---CSS-CCSCGGGGTTCSEEEEE-------SSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG
T ss_pred cccceeEEEccCCC---chh-cChhhhhCCCCCEEECC-------CCCccchhHHHhccCCCCEEECCCCc-cccCcHHH
Confidence 34778888888887 554 56667778888888888 77777888778888888888888888 66888888
Q ss_pred hcCCCCCeeecCcccccccccccccC---------CCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcC
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGK---------LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARS 244 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 244 (492)
.++++|++|++++|...+.+|..+.. +++|++|++++|.+. .+|..+..+++|+.|++..+....
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~----- 220 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA----- 220 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-----
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-----
Confidence 88888888888887767777766543 777777777777654 566666666677766666543221
Q ss_pred ccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEe
Q 011151 245 LGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVID 324 (492)
Q Consensus 245 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 324 (492)
++ ..+..+++|+.|++++|.+. ...+..+..+++|++|+++
T Consensus 221 --------------------l~-------~~l~~l~~L~~L~Ls~n~~~------------~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 221 --------------------LG-------PAIHHLPKLEELDLRGCTAL------------RNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp --------------------CC-------GGGGGCTTCCEEECTTCTTC------------CBCCCCTTCCCCCCEEECT
T ss_pred --------------------Cc-------hhhccCCCCCEEECcCCcch------------hhhHHHhcCCCCCCEEECC
Confidence 01 12445566777777776632 2234455566677777777
Q ss_pred ecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeecccc
Q 011151 325 EYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGM 375 (492)
Q Consensus 325 ~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~ 375 (492)
+|..... + |..+..+++|+.|++++|...+.+|. ++.+++|+.+++..+
T Consensus 262 ~n~~~~~-~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 262 DCSNLLT-L-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCB-C-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhh-c-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6665542 4 66667777777777777777776665 667777777776643
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=187.86 Aligned_cols=242 Identities=21% Similarity=0.143 Sum_probs=173.6
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc---Cchh
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI---PTNI 149 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~ 149 (492)
.+...++.+..+|..+. ++|+.|++++|. +....+..|..+++|++|+++ ++.+..+ +..+
T Consensus 11 ~l~c~~~~l~~ip~~~~------~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP------SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------SNGLSFKGCCSQSD 74 (306)
T ss_dssp EEECCSSCCSSCCSCCC------TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCEEEEEEHHH
T ss_pred EEEcCCCCcccCCCCCC------CCCCEEECCCCc---cCccCHhHhhccccCCEEECC-------CCccCcccCccccc
Confidence 45666667777666543 678888888887 666444557888888888888 7776654 4566
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
.++++|++|++++|. +..+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|.+....+..+..+++|
T Consensus 75 ~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 75 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 778888888888888 77787778888888888888887 44444 357788888888888887766666667777777
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... ... + ..+..+++|+.|++++|.+++.
T Consensus 153 ~~L~l~~n~l~~--~~~---------------------~-------~~~~~l~~L~~L~Ls~n~l~~~------------ 190 (306)
T 2z66_A 153 EVLKMAGNSFQE--NFL---------------------P-------DIFTELRNLTFLDLSQCQLEQL------------ 190 (306)
T ss_dssp CEEECTTCEEGG--GEE---------------------C-------SCCTTCTTCCEEECTTSCCCEE------------
T ss_pred CEEECCCCcccc--ccc---------------------h-------hHHhhCcCCCEEECCCCCcCCc------------
Confidence 777766554321 000 0 1244566788888888875322
Q ss_pred HhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCC-ccceeeccccc
Q 011151 308 LLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLP-SLESLYIEGMQ 376 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~-~L~~L~l~~~~ 376 (492)
.+..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +..++ +|++|++++|+
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 23456677888888888888777 6455677888899999998887776654 66664 88999998887
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-23 Score=212.57 Aligned_cols=350 Identities=12% Similarity=0.057 Sum_probs=180.3
Q ss_pred cceEEEEEEeecCCCc-ccccccCccC-CCC-ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-
Q 011151 69 KKILHLLLTLHRGASV-PISIWGNVKG-LRG-LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK- 144 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~-~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~- 144 (492)
++++.++++++.+... +..+. . ++. |+.|++++|......+ ++.....+++|++|+|+ ++.+..
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~----~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~-------~~~~~~~ 179 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLA----KARADDLETLKLDKCSGFTTDG-LLSIVTHCRKIKTLLME-------ESSFSEK 179 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHH----HHHGGGCCEEEEESCEEEEHHH-HHHHHHHCTTCSEEECT-------TCEEECC
T ss_pred CCCCeEEeeccEecHHHHHHHH----HhccccCcEEECcCCCCcCHHH-HHHHHhhCCCCCEEECc-------cccccCc
Confidence 5677788877765531 12222 2 334 7777777765322222 34444567777777777 554432
Q ss_pred ----cCchhhccCcCCEEEccCCCCc----cccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcc---
Q 011151 145 ----IPTNIEKLLHLKYLSLCGQREI----EKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF--- 213 (492)
Q Consensus 145 ----l~~~~~~l~~L~~L~L~~~~~~----~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~--- 213 (492)
++..+.++++|++|++++|... ..++..+.++++|++|++++|. ...+|..+..+++|++|+++....
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccc
Confidence 2233456677777777777622 2344445567777777777766 444555556666666666653211
Q ss_pred -----------------------cccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhh
Q 011151 214 -----------------------LRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGE 270 (492)
Q Consensus 214 -----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~ 270 (492)
...+|..+..+++|++|++..+.... ......+..+++|+.+.+.. .+ ...
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~--~~--~~~ 332 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVLETRN--VI--GDR 332 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH--HHHHHHHTTCTTCCEEEEEG--GG--HHH
T ss_pred hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH--HHHHHHHHhCcCCCEEeccC--cc--CHH
Confidence 12233334444555555554443211 10111123344444444431 00 111
Q ss_pred hhHhhhcccCCcceEeccc-----------ccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh
Q 011151 271 ARRAELEKKKNLVELGLHF-----------DRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM 339 (492)
Q Consensus 271 ~~~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~ 339 (492)
........+++|++|++.. +.+ ....+......+++|++|+++.+.+.... +..+.
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~L~~L~l~~~~l~~~~--~~~l~ 399 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-----------SQRGLIALAQGCQELEYMAVYVSDITNES--LESIG 399 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-----------CHHHHHHHHHHCTTCSEEEEEESCCCHHH--HHHHH
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCcc-----------CHHHHHHHHhhCccCeEEEeecCCccHHH--HHHHH
Confidence 2222334556666666662 222 11122222334566666666555544421 22333
Q ss_pred -ccccccEEEEec---ccCCCcCC------C-CCCCCccceeecccccc-ceeecccccCCcCCCCCCccccccccccee
Q 011151 340 -SLTNLRALLLKN---CRNCEHLP------P-LGKLPSLESLYIEGMQS-VKRVGNEFLGVESDTDGSSIIAFPKLKHLK 407 (492)
Q Consensus 340 -~l~~L~~L~L~~---~~~~~~~~------~-l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 407 (492)
.+++|+.|++++ |...++.| . +.++++|++|+++.|.. +........ ...+++|+.|+
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------~~~~~~L~~L~ 469 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------GQYSPNVRWML 469 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------HHSCTTCCEEE
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------HHhCccceEee
Confidence 366677777763 22222221 1 33466777777765542 111111111 01467788888
Q ss_pred ccCcccccccccCccccccccCCCCcceEeecCCCCccc--CCcccCCCCCCCeEEEeCCC
Q 011151 408 FYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA--LPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 408 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~ 466 (492)
+++|. +++.. ++..+..+++|++|+|++|+ ++. ++..+..+++|++|++++|.
T Consensus 470 L~~n~-l~~~~----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 470 LGYVG-ESDEG----LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ECSCC-SSHHH----HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CCHHH----HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 87764 33221 23344578999999999987 442 44445568899999999998
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=186.27 Aligned_cols=268 Identities=16% Similarity=0.089 Sum_probs=196.2
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l 152 (492)
.+.+++.+..+|..+. ++|+.|++++|. +....+..|..+++|++|+++ ++.+..++ ..+.++
T Consensus 36 c~~~~~~l~~iP~~~~------~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT------EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLT-------SNGINTIEEDSFSSL 99 (353)
T ss_dssp EECCSTTCSSCCTTCC------TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-------TSCCCEECTTTTTTC
T ss_pred eeCCCCCccccccccc------ccCcEEECCCCc---CcccCHHHhccCCCCCEEECC-------CCccCccCHhhcCCC
Confidence 5667778888887654 689999999998 777556578999999999999 88888775 568899
Q ss_pred CcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc--cccCCCCCcEEecCCCc-cccccccccccccccc
Q 011151 153 LHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ--GIGKLRKLMYLDNDDTW-FLRYLPVGIGELINLR 228 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~ 228 (492)
++|++|++++|. ++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|++++|. +....+..+..+++|+
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 999999999999 7777766 7889999999999998 666765 68889999999999985 4444456788899999
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|++..+..... ....+..++.|+.+.+..... ... ....+..+++|+.|++++|.+++.... .
T Consensus 178 ~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~---------~ 241 (353)
T 2z80_A 178 ELEIDASDLQSY---EPKSLKSIQNVSHLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFHFS---------E 241 (353)
T ss_dssp EEEEEETTCCEE---CTTTTTTCSEEEEEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred EEECCCCCcCcc---CHHHHhccccCCeecCCCCcc-ccc---hhhhhhhcccccEEECCCCcccccccc---------c
Confidence 999988866532 233445556666666655432 211 112345678999999999987654321 0
Q ss_pred hhhcCCCCCccEEEEeecCCCcc---ccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 309 LEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
.........++.++++++.+... .+ |.++..+++|+.|++++|.+....+. +..+++|++|++++|+
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccchhhccccccccccCcchhhh-HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 11123456788888887765542 14 55677889999999999977643333 5788999999999886
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=185.92 Aligned_cols=225 Identities=19% Similarity=0.177 Sum_probs=156.6
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~ 150 (492)
+.++..++++..+|..+ .++|+.|++++|. +....+..|..+++|++|+++ ++.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~-------~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI------PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-------SNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSCCSSCCTTC------CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTTT
T ss_pred eEEEcCcCCcccCCcCC------CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECC-------CCccceeCHhhcC
Confidence 45666777777766544 3688888888887 667566678888889999988 7777776 56688
Q ss_pred ccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
++++|++|++++|..++.+ |..+..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 8888899998888645555 566788888888888888854444666788888888888888775444444667777777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHh
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLL 309 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 309 (492)
|++..+.... + +. ..+..+++|+.|++++|.+++ ..+
T Consensus 158 L~l~~n~l~~--------~-----------------~~------~~~~~l~~L~~L~l~~n~l~~------------~~~ 194 (285)
T 1ozn_A 158 LFLHGNRISS--------V-----------------PE------RAFRGLHSLDRLLLHQNRVAH------------VHP 194 (285)
T ss_dssp EECCSSCCCE--------E-----------------CT------TTTTTCTTCCEEECCSSCCCE------------ECT
T ss_pred EECCCCcccc--------c-----------------CH------HHhcCccccCEEECCCCcccc------------cCH
Confidence 7666543221 0 00 124456677777777777432 123
Q ss_pred hhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 310 EALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 310 ~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+..+
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred hHccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCCCccCC
Confidence 455666777777777777766 5455677777777777777765544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-24 Score=214.91 Aligned_cols=368 Identities=16% Similarity=0.130 Sum_probs=240.7
Q ss_pred cceEEEEEEeecCCCc-ccccccCccCCCCceEEEeccCCccccccccc-hhhccCC----eeeEEecchhhhhhccccc
Q 011151 69 KKILHLLLTLHRGASV-PISIWGNVKGLRGLRSLLVESDDYSWFSEVLP-QLFDKLT----CLRALKLEVRQRWLCKNFI 142 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~----~L~~L~L~~~~~~~~~~~~ 142 (492)
++++.++++++.+... ...+...+..+++|++|++++|. +....+ ..+..++ +|++|+++ ++.+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~-------~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQ-------NCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECT-------TSCC
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEcc-------CCCC
Confidence 5889999999998741 11233334488999999999998 544333 2234455 79999999 7777
Q ss_pred c-----ccCchhhccCcCCEEEccCCCCcc-ccchhhh-----cCCCCCeeecCcccccc----cccccccCCCCCcEEe
Q 011151 143 K-----KIPTNIEKLLHLKYLSLCGQREIE-KLPETLC-----ELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLD 207 (492)
Q Consensus 143 ~-----~l~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~-----~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~ 207 (492)
. .++..+..+++|++|++++|. ++ ..+..+. ...+|++|++++|.+.. .++..+..+++|++|+
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6 457778899999999999999 54 3233332 25689999999998544 3456677889999999
Q ss_pred cCCCccccccccccc-----ccccccccceEEeecccCCC-cCccccccccccCCceEecCCCCCChh-hhh-Hhhhccc
Q 011151 208 NDDTWFLRYLPVGIG-----ELINLRRVTKFVVGGGYDRA-RSLGSLKKLNLLRECSIRGLGGVSDAG-EAR-RAELEKK 279 (492)
Q Consensus 208 l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~~l~~~~~~~~~~~~-~~~-~~~l~~~ 279 (492)
+++|.+....+..+. ..++|+.|++..+....... .....+..++.|+.+++.... +...+ ..+ ......+
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPS 255 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCC
Confidence 999987554343333 25689999998876553100 123335566778777776642 21111 111 1222358
Q ss_pred CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhh-----ccccccEEEEecccC
Q 011151 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVM-----SLTNLRALLLKNCRN 354 (492)
Q Consensus 280 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~-----~l~~L~~L~L~~~~~ 354 (492)
++|+.|++++|.+++. ....++..+..+++|++|++++|.+.... +..+. ..++|+.|++++|.+
T Consensus 256 ~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 256 SRLRTLWIWECGITAK--------GCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp CCCCEEECTTSCCCHH--------HHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCceEEECcCCCCCHH--------HHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCCCC
Confidence 8999999999986421 22335666777899999999999875421 22333 236999999999986
Q ss_pred CCc----CCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccC
Q 011151 355 CEH----LPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIII 429 (492)
Q Consensus 355 ~~~----~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 429 (492)
... ++. +..+++|++|++++|. +...+........ ....++|+.|++++|. +++... ..+|..+..
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l------~~~~~~L~~L~L~~n~-i~~~~~-~~l~~~l~~ 396 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGL------GQPGSVLRVLWLADCD-VSDSSC-SSLAATLLA 396 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHH------TSTTCCCCEEECTTSC-CCHHHH-HHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHH------cCCCCceEEEECCCCC-CChhhH-HHHHHHHHh
Confidence 654 222 5567999999999996 4433211111000 0026799999999984 442111 134556778
Q ss_pred CCCcceEeecCCCCccc----CCccc-CCCCCCCeEEEeCCCc
Q 011151 430 MPRLSFLEISGCCKLKA----LPDLL-LQKTTLQKLLIGRCPI 467 (492)
Q Consensus 430 ~~~L~~L~l~~c~~l~~----l~~~l-~~l~~L~~L~l~~c~~ 467 (492)
+++|++|++++|+.-.. +...+ ....+|+.|++.++..
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 99999999999754321 11112 1245788888777654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=208.93 Aligned_cols=369 Identities=17% Similarity=0.094 Sum_probs=204.0
Q ss_pred cceEEEEEEeecC----CCcccc--------cccCccCCCCceEEEeccCCccccccccchhhcc-CCe-eeEEecchhh
Q 011151 69 KKILHLLLTLHRG----ASVPIS--------IWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDK-LTC-LRALKLEVRQ 134 (492)
Q Consensus 69 ~~~~~l~l~~~~~----~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-L~~L~L~~~~ 134 (492)
++++++.+.++.. ..+|.. +......+++|+.|++++|. +.+..+..+.. ++. |++|+++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---i~~~~~~~l~~~~~~~L~~L~L~--- 146 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI---VSDLDLDRLAKARADDLETLKLD--- 146 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB---CCHHHHHHHHHHHGGGCCEEEEE---
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE---ecHHHHHHHHHhccccCcEEECc---
Confidence 5799999987432 111111 11111268999999999996 55544554544 444 9999998
Q ss_pred hhhcccc-c--cccCchhhccCcCCEEEccCCCCccc----cchhhhcCCCCCeeecCccccc----ccccccccCCCCC
Q 011151 135 RWLCKNF-I--KKIPTNIEKLLHLKYLSLCGQREIEK----LPETLCELYNLERLNITSCNHL----RELPQGIGKLRKL 203 (492)
Q Consensus 135 ~~~~~~~-~--~~l~~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L 203 (492)
++. + ..++....++++|++|++++|.+.+. ++.....+++|++|++++|... ..++..+.++++|
T Consensus 147 ----~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 147 ----KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp ----SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred ----CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 443 2 22334456899999999999983333 4445678999999999999854 3555566789999
Q ss_pred cEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcc
Q 011151 204 MYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV 283 (492)
Q Consensus 204 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 283 (492)
++|++++|.+. .+|..+..+++|++|.+...............+..++.|+.+.+..... ......+..+++|+
T Consensus 223 ~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 223 VSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIR 296 (592)
T ss_dssp CEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCC
T ss_pred cEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-----hHHHHHHhhcCCCc
Confidence 99999999764 4677788889999988865332211122333344444444444433211 01112344455555
Q ss_pred eEecccccCCCCchhhH-------------hhhhHHHHhhhcCCCCCccEEEEee----------cC-CCccccCchhhh
Q 011151 284 ELGLHFDRLRDGDEEQA-------------RRRESERLLEALGPPPNLKELVIDE----------YR-GRRNVVPRNWVM 339 (492)
Q Consensus 284 ~L~l~~~~l~~~~~~~~-------------~~~~~~~~~~~l~~~~~L~~L~l~~----------~~-~~~~~l~~~~~~ 339 (492)
+|++++|.+++...... .......+......+++|++|++++ +. .....+ +....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-IALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH-HHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH-HHHHh
Confidence 55555554311000000 0001122222223345555555552 22 211111 22223
Q ss_pred ccccccEEEEecccCCCcCCC-CC-CCCccceeeccc---cccceeeccc--ccCCcCCCCCCcccccccccceeccCcc
Q 011151 340 SLTNLRALLLKNCRNCEHLPP-LG-KLPSLESLYIEG---MQSVKRVGNE--FLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 340 ~l~~L~~L~L~~~~~~~~~~~-l~-~l~~L~~L~l~~---~~~l~~~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
.+++|++|+++.+.+...... +. .+++|++|++++ |..++..+.. +. .....+++|+.|++++|.
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~--------~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR--------SLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH--------HHHHHCTTCCEEEEECCG
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH--------HHHHhCCCCCEEEEecCC
Confidence 455555555544433222111 22 255666666653 2222221100 00 002257788888887665
Q ss_pred c-ccccccCccccccccCCCCcceEeecCCCCcc-cCCcccCCCCCCCeEEEeCCC
Q 011151 413 E-LEEWDFGTAIKGEIIIMPRLSFLEISGCCKLK-ALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 413 ~-l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~ 466 (492)
+ +.+..+. .....+++|+.|++++|.... .++..+..+++|++|++++|+
T Consensus 448 ~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 448 GGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp GGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3 2222111 112258999999999875322 355556789999999999998
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-22 Score=189.36 Aligned_cols=261 Identities=16% Similarity=0.172 Sum_probs=201.9
Q ss_pred cceEEEEEEeecCCCccc-ccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPI-SIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
++++.++++++.+..++. .+. ++++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..+|.
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~----~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ----RCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLS-------YNYLSNLSS 117 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCSSCCH
T ss_pred ccCcEEECCCCcCcccCHHHhc----cCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEECC-------CCcCCcCCH
Confidence 589999999999987655 344 89999999999998 777677889999999999999 999999987
Q ss_pred h-hhccCcCCEEEccCCCCccccch--hhhcCCCCCeeecCcccccccc-cccccCCCCCcEEecCCCcccccccccccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLREL-PQGIGKLRKLMYLDNDDTWFLRYLPVGIGE 223 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 223 (492)
. +.++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ +..+.++++|++|++++|.+....|..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 6 8899999999999999 788886 6889999999999999545555 567899999999999999987777889999
Q ss_pred cccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhh
Q 011151 224 LINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRR 303 (492)
Q Consensus 224 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 303 (492)
+++|++|++..+.... ........++.|+.+.+....-.... ..........+.++.+++..+.+.+.
T Consensus 197 l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~~~l~~~-------- 264 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVKITDE-------- 264 (353)
T ss_dssp CSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCBCTTCC-CC------CCCCCCEEEEESCBCCHH--------
T ss_pred cccCCeecCCCCcccc---chhhhhhhcccccEEECCCCcccccc-ccccccccccchhhccccccccccCc--------
Confidence 9999999999886542 01111234566666666554221110 01112234567788888888875421
Q ss_pred hHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcC
Q 011151 304 ESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHL 358 (492)
Q Consensus 304 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~ 358 (492)
....++..+..+++|++|++++|.+.. +|+..+..+++|++|++++|.+..+.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 234567778889999999999999987 84444689999999999999766543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=189.87 Aligned_cols=241 Identities=20% Similarity=0.202 Sum_probs=183.3
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chh
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNI 149 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~ 149 (492)
.+.+...+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..++ ..+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP------SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLG-------RNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTT
T ss_pred CcEEEECCCCcCccCCCCC------CCccEEECcCCc---CceECHHHcCCCCCCCEEECC-------CCccCCcChhhc
Confidence 3467777777877777654 789999999998 777678889999999999999 88888876 568
Q ss_pred hccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccc-ccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPV-GIGELIN 226 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~ 226 (492)
.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+| ..+.++++|++|++++|...+.++. .+..+++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 899999999999999 7777654 7789999999999998 55554 4678899999999998766555554 4677788
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|+++.+.... +. .+..+++|+.|++++|.+++
T Consensus 198 L~~L~L~~n~l~~-----~~----------------------------~~~~l~~L~~L~Ls~N~l~~------------ 232 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-----MP----------------------------NLTPLVGLEELEMSGNHFPE------------ 232 (452)
T ss_dssp CCEEECTTSCCSS-----CC----------------------------CCTTCTTCCEEECTTSCCSE------------
T ss_pred CCEEECCCCcccc-----cc----------------------------cccccccccEEECcCCcCcc------------
Confidence 8888776554331 01 13355678888888887542
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
..+..+..+++|++|++++|.+.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 234556777888888888888776 5567778888888888888876654444 6778888888888876
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-21 Score=189.17 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=181.6
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chh
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNI 149 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~ 149 (492)
.+.+...+..+..+|..+. ++++.|++++|. +....+..|..+++|++|+|+ ++.+..++ ..+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~------~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-------~n~i~~i~~~~~ 108 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS------TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLS-------RNHIRTIEIGAF 108 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC------TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECC-------SSCCCEECGGGG
T ss_pred CCEEEeCCCCcCcCCCCCC------CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECC-------CCcCCccChhhc
Confidence 3467777777888887654 788999999998 777667778999999999999 88888876 568
Q ss_pred hccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccc-ccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPV-GIGELIN 226 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~ 226 (492)
.++++|++|++++|. ++.+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|.....++. .+..+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp TTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred cCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 889999999999998 777765 57889999999999998 55544 4678899999999998765555554 4677788
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESE 306 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 306 (492)
|+.|++..+.... + + .+..+++|+.|++++|.+++.
T Consensus 187 L~~L~L~~n~l~~-----~--------------------~--------~~~~l~~L~~L~Ls~N~l~~~----------- 222 (440)
T 3zyj_A 187 LRYLNLAMCNLRE-----I--------------------P--------NLTPLIKLDELDLSGNHLSAI----------- 222 (440)
T ss_dssp CCEEECTTSCCSS-----C--------------------C--------CCTTCSSCCEEECTTSCCCEE-----------
T ss_pred cCeecCCCCcCcc-----c--------------------c--------ccCCCcccCEEECCCCccCcc-----------
Confidence 8888776554321 0 1 134556788888888875422
Q ss_pred HHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 307 RLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
.+..+..+++|++|++++|.+.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 223 -~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 -RPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CTTTTTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -ChhhhccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 24456677888888888888777 6566777888888888888877655444 6778888888888776
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-22 Score=186.24 Aligned_cols=245 Identities=13% Similarity=0.090 Sum_probs=158.2
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.+++|+.|++++|. +....|..|..+++|++|+++ ++.+...+. +..+++|++|++++|. ++.++
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECT-------TSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE---
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECC-------CCcCCcchh-hhhcCCCCEEECcCCc-ccccc---
Confidence 56677788887776 666556667777778888887 677666554 6777778888887777 66554
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..++|++|++++|. +..++. ..+++|++|++++|.+....+..+..+++|+.|+++.+.... .
T Consensus 97 -~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~----- 159 (317)
T 3o53_A 97 -VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------V----- 159 (317)
T ss_dssp -ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------E-----
T ss_pred -CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------c-----
Confidence 24677777777777 444432 236677777777777655555556666667666665543221 0
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
. .......+++|+.|++++|.+++. .....+++|++|++++|.+.. +
T Consensus 160 ------------~-----~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~--l 206 (317)
T 3o53_A 160 ------------N-----FAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF--M 206 (317)
T ss_dssp ------------E-----GGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE--E
T ss_pred ------------c-----HHHHhhccCcCCEEECCCCcCccc--------------ccccccccCCEEECCCCcCCc--c
Confidence 0 001123567788888888875422 223347788888888888777 6
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccc-eeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSV-KRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+..+..+++|+.|++++|.+....+.+..+++|+.|++++|... ..++. + ...+++|+.|.+.++.
T Consensus 207 -~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~-----------~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 207 -GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-F-----------FSKNQRVQTVAKQTVK 273 (317)
T ss_dssp -CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH-H-----------HHTCHHHHHHHHHHHH
T ss_pred -hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH-H-----------HhccccceEEECCCch
Confidence 55577888888888888876644344777788888888887733 11111 1 1256677777766655
Q ss_pred cccc
Q 011151 413 ELEE 416 (492)
Q Consensus 413 ~l~~ 416 (492)
.++.
T Consensus 274 ~l~~ 277 (317)
T 3o53_A 274 KLTG 277 (317)
T ss_dssp HHHS
T ss_pred hccC
Confidence 5444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=188.83 Aligned_cols=258 Identities=19% Similarity=0.179 Sum_probs=157.6
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++.++++++.+..+|..+. ++|+.|++++|. +.. +|. .+++|++|+++ +|.+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~------~~L~~L~L~~N~---l~~-lp~---~l~~L~~L~Ls-------~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP------AHITTLVIPDNN---LTS-LPA---LPPELRTLEVS-------GNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC------TTCSEEEECSCC---CSC-CCC---CCTTCCEEEEC-------SCCCSCCCC-
T ss_pred CCCcEEEecCCCcCccChhhC------CCCcEEEecCCC---CCC-CCC---cCCCCCEEEcC-------CCcCCcCCC-
Confidence 357788888888887776553 688888888887 554 444 46778888888 777887776
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
.+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|++|++++|.+. .+|.. .++|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCC
Confidence 66788888888888 777776 56788888888887 6666653 477888888888653 33321 23444
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERL 308 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 308 (492)
.|.+..+.... ++ ..+++|+.|++++|.+++.+
T Consensus 165 ~L~L~~N~l~~-------------------------l~----------~~~~~L~~L~Ls~N~l~~l~------------ 197 (622)
T 3g06_A 165 KLWAYNNQLTS-------------------------LP----------MLPSGLQELSVSDNQLASLP------------ 197 (622)
T ss_dssp EEECCSSCCSC-------------------------CC----------CCCTTCCEEECCSSCCSCCC------------
T ss_pred EEECCCCCCCC-------------------------Cc----------ccCCCCcEEECCCCCCCCCC------------
Confidence 44443322111 00 12346677777777654221
Q ss_pred hhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCC
Q 011151 309 LEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGV 388 (492)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 388 (492)
..+++|+.|++++|.+.. + |. .+++|+.|++++|.+.. +| ..+++|+.|++++|. ++.++.
T Consensus 198 ----~~~~~L~~L~L~~N~l~~--l-~~---~~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~-L~~lp~----- 258 (622)
T 3g06_A 198 ----TLPSELYKLWAYNNRLTS--L-PA---LPSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNR-LTSLPM----- 258 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSS--C-CC---CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCCC-----
T ss_pred ----CccchhhEEECcCCcccc--c-CC---CCCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCC-CCcCCc-----
Confidence 123566777777666665 5 32 24666667776664443 33 334566666666664 333221
Q ss_pred cCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCc
Q 011151 389 ESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKL 444 (492)
Q Consensus 389 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 444 (492)
.+++|+.|++++|. ++ .+|..+..+++|+.|+|++|+..
T Consensus 259 ----------~~~~L~~L~Ls~N~-L~------~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 ----------LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ----------CCTTCCEEECCSSC-CC------SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ----------ccccCcEEeCCCCC-CC------cCCHHHhhccccCEEEecCCCCC
Confidence 34556666666542 32 23344556666666666665443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=179.29 Aligned_cols=243 Identities=17% Similarity=0.142 Sum_probs=168.8
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCcccc---chhhh
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKL---PETLC 174 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~l---p~~~~ 174 (492)
+.++++++. ++. +|..+ .++|++|+++ ++.+..+|.. +.++++|++|++++|. +..+ |..+.
T Consensus 10 ~~l~c~~~~---l~~-ip~~~--~~~l~~L~L~-------~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 75 (306)
T 2z66_A 10 TEIRCNSKG---LTS-VPTGI--PSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF 75 (306)
T ss_dssp TEEECCSSC---CSS-CCSCC--CTTCCEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH
T ss_pred CEEEcCCCC---ccc-CCCCC--CCCCCEEECC-------CCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccc
Confidence 356666655 544 44322 3578999999 8888888865 6889999999999998 5544 56777
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccc-ccccccccccccceEEeecccCCCcCccccccccc
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
.+++|++|++++|. +..+|..+..+++|++|++++|.+....+ ..+..+++|+.|++..+.....
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 141 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------------- 141 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-------------
T ss_pred cccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-------------
Confidence 88999999999998 66778778889999999999987644333 3566677777776654432210
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
.+ ..+..+++|+.|++++|.+++ ...+..+..+++|++|++++|.+.. +
T Consensus 142 -----------~~-------~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~--~ 190 (306)
T 2z66_A 142 -----------FN-------GIFNGLSSLEVLKMAGNSFQE-----------NFLPDIFTELRNLTFLDLSQCQLEQ--L 190 (306)
T ss_dssp -----------ST-------TTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTTCCEEECTTSCCCE--E
T ss_pred -----------ch-------hhcccCcCCCEEECCCCcccc-----------ccchhHHhhCcCCCEEECCCCCcCC--c
Confidence 00 235567788888888887421 1245566778888888888888776 5
Q ss_pred CchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccc-cccceeccCc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFP-KLKHLKFYDM 411 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 411 (492)
++.++..+++|+.|++++|.+....+. +..+++|++|++++|. +.......+ ..+| +|+.|+++++
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----------~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL-----------QHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSC-----------CCCCTTCCEEECTTC
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHHH-----------HhhhccCCEEEccCC
Confidence 567778888888888888876655443 6778888888888886 332222111 1443 7777777775
Q ss_pred c
Q 011151 412 E 412 (492)
Q Consensus 412 ~ 412 (492)
+
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=184.95 Aligned_cols=242 Identities=20% Similarity=0.191 Sum_probs=181.7
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccc-hhhhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLP-ETLCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~ 175 (492)
.+.++..+.. +.. +|..+ .+++++|+|+ ++.+..++ ..+.++++|++|++++|. +..++ ..+.+
T Consensus 56 ~~~v~c~~~~---l~~-iP~~~--~~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~ 121 (452)
T 3zyi_A 56 FSKVVCTRRG---LSE-VPQGI--PSNTRYLNLM-------ENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNG 121 (452)
T ss_dssp SCEEECCSSC---CSS-CCSCC--CTTCSEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred CcEEEECCCC---cCc-cCCCC--CCCccEEECc-------CCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccC
Confidence 4566666665 554 44423 2578889998 78887764 568888999999999998 55554 56888
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++..+....
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------- 185 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE--------------- 185 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC---------------
T ss_pred cccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc---------------
Confidence 8999999999988 555544 47788899999999987755444567777778777665432111
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
.++. ..+.++++|+.|++++|.+++. ..+..+++|++|++++|.+.. ++
T Consensus 186 ---------~i~~------~~~~~l~~L~~L~L~~n~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~--~~ 234 (452)
T 3zyi_A 186 ---------YISE------GAFEGLFNLKYLNLGMCNIKDM--------------PNLTPLVGLEELEMSGNHFPE--IR 234 (452)
T ss_dssp ---------EECT------TTTTTCTTCCEEECTTSCCSSC--------------CCCTTCTTCCEEECTTSCCSE--EC
T ss_pred ---------ccCh------hhccCCCCCCEEECCCCccccc--------------ccccccccccEEECcCCcCcc--cC
Confidence 0011 2366788999999999997543 246778999999999999988 66
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+..+..+++|+.|++++|.+....+. +..+++|+.|+|++|. ++.++...+. .+++|+.|++++++
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-----------~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFT-----------PLRYLVELHLHHNP 301 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSST-----------TCTTCCEEECCSSC
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhc-----------cccCCCEEEccCCC
Confidence 88899999999999999988776555 8889999999999997 5555544433 68899999998865
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=182.94 Aligned_cols=242 Identities=20% Similarity=0.218 Sum_probs=183.4
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccc-hhhhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLP-ETLCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~ 175 (492)
.+.++..+.. +.. +|..+. ++++.|+|+ ++.+..++ ..+.++++|++|++++|. +..++ ..+.+
T Consensus 45 ~~~v~c~~~~---l~~-iP~~~~--~~l~~L~L~-------~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKN---LRE-VPDGIS--TNTRLLNLH-------ENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG 110 (440)
T ss_dssp SCEEECCSCC---CSS-CCSCCC--TTCSEEECC-------SCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT
T ss_pred CCEEEeCCCC---cCc-CCCCCC--CCCcEEEcc-------CCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC
Confidence 4566666665 555 554332 678889999 88888776 568889999999999998 66554 56888
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++..+....
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------- 174 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS--------------- 174 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC---------------
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc---------------
Confidence 9999999999988 555554 57888999999999987755555567777788877765432111
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP 334 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~ 334 (492)
.++. ..+.++++|+.|++++|.++..+ .+..+++|++|++++|.+.. ++
T Consensus 175 ---------~i~~------~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~l~~L~~L~Ls~N~l~~--~~ 223 (440)
T 3zyj_A 175 ---------YISE------GAFEGLSNLRYLNLAMCNLREIP--------------NLTPLIKLDELDLSGNHLSA--IR 223 (440)
T ss_dssp ---------EECT------TTTTTCSSCCEEECTTSCCSSCC--------------CCTTCSSCCEEECTTSCCCE--EC
T ss_pred ---------eeCc------chhhcccccCeecCCCCcCcccc--------------ccCCCcccCEEECCCCccCc--cC
Confidence 0011 23667889999999999975332 36778999999999999887 66
Q ss_pred chhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcc
Q 011151 335 RNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDME 412 (492)
Q Consensus 335 ~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 412 (492)
+..+..+++|+.|++++|.+....+. +..+++|++|+|++|. ++.++...+. .+++|+.|++++++
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-----------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFT-----------PLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTS-----------SCTTCCEEECCSSC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhc-----------cccCCCEEEcCCCC
Confidence 88899999999999999988776555 8899999999999997 5555544433 68899999998866
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=186.53 Aligned_cols=258 Identities=21% Similarity=0.193 Sum_probs=187.3
Q ss_pred CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhc
Q 011151 96 RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCE 175 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 175 (492)
.+++.|+++++. +.. +|..+. ++|++|+++ ++.+..+|. .+++|++|++++|. ++.+|. .
T Consensus 40 ~~l~~L~ls~n~---L~~-lp~~l~--~~L~~L~L~-------~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESG---LTT-LPDCLP--AHITTLVIP-------DNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSC---CSC-CCSCCC--TTCSEEEEC-------SCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---C
T ss_pred CCCcEEEecCCC---cCc-cChhhC--CCCcEEEec-------CCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---C
Confidence 458889998887 554 554343 789999999 888888887 56889999999998 778876 6
Q ss_pred CCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccC
Q 011151 176 LYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLR 255 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 255 (492)
+++|++|++++|. +..+|. .+++|+.|++++|.+. .+|.. +++|+.|+++.+....
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~---------------- 155 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS---------------- 155 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC----------------
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC----------------
Confidence 7889999999988 666766 5688999999988763 45543 3667777666543221
Q ss_pred CceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCc
Q 011151 256 ECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPR 335 (492)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~ 335 (492)
++ ...++|+.|++++|.++.. + ..+++|+.|++++|.+.. + |
T Consensus 156 ---------l~----------~~~~~L~~L~L~~N~l~~l-------------~---~~~~~L~~L~Ls~N~l~~--l-~ 197 (622)
T 3g06_A 156 ---------LP----------ALPSELCKLWAYNNQLTSL-------------P---MLPSGLQELSVSDNQLAS--L-P 197 (622)
T ss_dssp ---------CC----------CCCTTCCEEECCSSCCSCC-------------C---CCCTTCCEEECCSSCCSC--C-C
T ss_pred ---------cC----------CccCCCCEEECCCCCCCCC-------------c---ccCCCCcEEECCCCCCCC--C-C
Confidence 00 0124678888888886432 1 346789999999988877 6 4
Q ss_pred hhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccccc
Q 011151 336 NWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELE 415 (492)
Q Consensus 336 ~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 415 (492)
. .+++|+.|++++|.+.. ++. .+++|+.|++++|. ++.++ . .+++|+.|+++++. ++
T Consensus 198 ~---~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp----~-----------~l~~L~~L~Ls~N~-L~ 254 (622)
T 3g06_A 198 T---LPSELYKLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLP----V-----------LPSELKELMVSGNR-LT 254 (622)
T ss_dssp C---CCTTCCEEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCC----C-----------CCTTCCEEECCSSC-CS
T ss_pred C---ccchhhEEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCC----C-----------CCCcCcEEECCCCC-CC
Confidence 3 35789999999886553 443 25789999998886 44433 1 56789999988873 54
Q ss_pred ccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCCch
Q 011151 416 EWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCPIL 468 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 468 (492)
.+ |. .+++|+.|++++| .++.+|..+.++++|+.|++++|+.-
T Consensus 255 ~l------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 255 SL------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CC------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred cC------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 32 22 5788999999885 66788888888999999999998853
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-21 Score=201.60 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=72.5
Q ss_pred CCCccEEEEeecCCCccccCchhhhccccccEEEEe-----cccCCCcCCC-------CCCCCccceeeccccccceeec
Q 011151 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLK-----NCRNCEHLPP-------LGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~-----~~~~~~~~~~-------l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
+++|++|.+.++.+....+ ......+++|+.|+++ +|...+..+. +..+++|++|++++ .+...+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~ 447 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAAL-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV 447 (594)
T ss_dssp CTTCCEEEEEESCCCHHHH-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH
T ss_pred chhHHHHHHhcCCcCHHHH-HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH
Confidence 4556666555444433211 1112246666666666 2223332211 23455666666654 122211
Q ss_pred ccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCccc-CCcccCCCCCCCeEE
Q 011151 383 NEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKA-LPDLLLQKTTLQKLL 461 (492)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~ 461 (492)
....+ ..+++|+.|++++|. +++..+ +.....+++|++|+|++|+.... +...+..+++|++|+
T Consensus 448 ~~~l~----------~~~~~L~~L~L~~~~-i~~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 448 FEYIG----------TYAKKMEMLSVAFAG-DSDLGM----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHHHH----------HHCTTCCEEEEESCC-SSHHHH----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred HHHHH----------HhchhccEeeccCCC-CcHHHH----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 11111 036778888887765 322211 11124689999999999876222 223445688999999
Q ss_pred EeCCCch
Q 011151 462 IGRCPIL 468 (492)
Q Consensus 462 l~~c~~l 468 (492)
+++|+.-
T Consensus 513 l~~~~~~ 519 (594)
T 2p1m_B 513 MSSCSVS 519 (594)
T ss_dssp EESSCCB
T ss_pred eeCCCCC
Confidence 9999873
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-22 Score=186.99 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=145.2
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccchhhhcC
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPETLCEL 176 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 176 (492)
++..++..+. +.......+..+++|++|+++ ++.+..++ ..+.++++|++|++++|. +...++ +..+
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~-------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL 79 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECT-------TSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECc-------CCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc
Confidence 3444444444 444444555666677777777 67776665 457777777777777777 554443 6777
Q ss_pred CCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCC
Q 011151 177 YNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRE 256 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~ 256 (492)
++|++|++++|. +..++ ..++|++|++++|.+....+. .+++|+.|++..+....
T Consensus 80 ~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~----------------- 134 (317)
T 3o53_A 80 STLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM----------------- 134 (317)
T ss_dssp TTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-----------------
T ss_pred CCCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-----------------
Confidence 777777777776 44443 236777777777765433222 23445555444332221
Q ss_pred ceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhc-CCCCCccEEEEeecCCCccccCc
Q 011151 257 CSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL-GPPPNLKELVIDEYRGRRNVVPR 335 (492)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~l~~ 335 (492)
.+ ...+..+++|+.|++++|.+++.. +..+ ..+++|++|++++|.+.. + +
T Consensus 135 --------~~------~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~~~~~l~~L~~L~L~~N~l~~--~-~ 185 (317)
T 3o53_A 135 --------LR------DLDEGCRSRVQYLDLKLNEIDTVN------------FAELAASSDTLEHLNLQYNFIYD--V-K 185 (317)
T ss_dssp --------GG------GBCTGGGSSEEEEECTTSCCCEEE------------GGGGGGGTTTCCEEECTTSCCCE--E-E
T ss_pred --------cc------chhhhccCCCCEEECCCCCCCccc------------HHHHhhccCcCCEEECCCCcCcc--c-c
Confidence 00 012344566777777776643211 1122 235666666666666655 3 2
Q ss_pred hhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCccccc
Q 011151 336 NWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELE 415 (492)
Q Consensus 336 ~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 415 (492)
. ...+++|+.|++++|.+....+.+..+++|++|++++|. ++.++..+ ..+++|+.|++++++ +.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~N~-~~ 250 (317)
T 3o53_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNG-FH 250 (317)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCC-CB
T ss_pred c-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccCCC-cc
Confidence 2 224666666666666555443445556666666666665 44443321 145666666666554 21
Q ss_pred ccccCccccccccCCCCcceEeecCCCCccc
Q 011151 416 EWDFGTAIKGEIIIMPRLSFLEISGCCKLKA 446 (492)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 446 (492)
. +.+|.++..+++|+.|++.+|+.++.
T Consensus 251 ~----~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 251 C----GTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp H----HHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred C----cCHHHHHhccccceEEECCCchhccC
Confidence 0 12334455566666666665555443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-20 Score=185.56 Aligned_cols=254 Identities=13% Similarity=0.082 Sum_probs=188.2
Q ss_pred cCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEE
Q 011151 80 RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLS 159 (492)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ 159 (492)
....+|..+......+++|+.|++++|. +.+..|..|..+++|++|+|+ +|.+...++ +..+++|++|+
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~-l~~l~~L~~L~ 86 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-------SNVLYETLD-LESLSTLRTLD 86 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECT-------TSCCEEEEE-CTTCTTCCEEE
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEee-------CCCCCCCcc-cccCCCCCEEE
Confidence 3333555555444456689999999998 777677788999999999999 888876655 88899999999
Q ss_pred ccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeeccc
Q 011151 160 LCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 160 L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
+++|. ++.+|. .++|++|++++|. +..++. ..+++|++|++++|.+....|..+..+++|+.|+++.+....
T Consensus 87 Ls~N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 87 LNNNY-VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCSSE-EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred ecCCc-CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 99998 776664 4889999999998 454443 357889999999998877777778888888888877654332
Q ss_pred CCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCcc
Q 011151 240 DRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK 319 (492)
Q Consensus 240 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 319 (492)
. .+. .....+++|+.|++++|.+++. .....+++|+
T Consensus 159 ~---~~~---------------------------~l~~~l~~L~~L~Ls~N~l~~~--------------~~~~~l~~L~ 194 (487)
T 3oja_A 159 V---NFA---------------------------ELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLK 194 (487)
T ss_dssp E---EGG---------------------------GGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCC
T ss_pred c---ChH---------------------------HHhhhCCcccEEecCCCccccc--------------cccccCCCCC
Confidence 0 000 1123567899999999986432 2344688999
Q ss_pred EEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccc-eeecccccCCcCCCCCCccc
Q 011151 320 ELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSV-KRVGNEFLGVESDTDGSSII 398 (492)
Q Consensus 320 ~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~ 398 (492)
.|++++|.+.. + |..+..+++|+.|++++|.+.+..+.+..+++|+.|++++|... ..++. + +.
T Consensus 195 ~L~Ls~N~l~~--~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~-~-----------~~ 259 (487)
T 3oja_A 195 TLDLSSNKLAF--M-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-F-----------FS 259 (487)
T ss_dssp EEECCSSCCCE--E-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH-H-----------HT
T ss_pred EEECCCCCCCC--C-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH-H-----------HH
Confidence 99999999887 7 55688999999999999988765455888999999999998843 12221 1 12
Q ss_pred ccccccceeccCc
Q 011151 399 AFPKLKHLKFYDM 411 (492)
Q Consensus 399 ~l~~L~~L~l~~~ 411 (492)
.++.|+.+.+..+
T Consensus 260 ~l~~L~~l~~~~~ 272 (487)
T 3oja_A 260 KNQRVQTVAKQTV 272 (487)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hCCCCcEEecccc
Confidence 5677777776543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-20 Score=178.81 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=129.7
Q ss_pred hccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCcc--ccchhhh-------cCCCCCeeecCcccc
Q 011151 119 FDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIE--KLPETLC-------ELYNLERLNITSCNH 189 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~~ 189 (492)
++..++|+.|+++ ++.+ .+|..+... |++|++++|. +. .+|..+. ++++|++|++++|.+
T Consensus 39 ~~~~~~L~~l~l~-------~n~l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKR-------VDTE-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEECTTHHHH-------CCTT-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred EccCCCceeEeec-------cccc-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence 3445667777777 6666 666655543 7777777776 43 4555444 577788888887775
Q ss_pred cccccccc--cCCCCCcEEecCCCccccccccccccc-----ccccccceEEeecccCCCcCccccccccccCCceEecC
Q 011151 190 LRELPQGI--GKLRKLMYLDNDDTWFLRYLPVGIGEL-----INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGL 262 (492)
Q Consensus 190 ~~~lp~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 262 (492)
...+|..+ ..+++|++|++++|.+... |..+..+ ++|+.|+++.+....
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~----------------------- 163 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN----------------------- 163 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-----------------------
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-----------------------
Confidence 55667665 6777788888877766544 5555555 666666666553321
Q ss_pred CCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhc--CCCCCccEEEEeecCCCcc-ccCchhhh
Q 011151 263 GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL--GPPPNLKELVIDEYRGRRN-VVPRNWVM 339 (492)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~-~l~~~~~~ 339 (492)
.+. ..+..+++|+.|++++|.+. .....+..+ ..+++|++|++++|.+..- .++...+.
T Consensus 164 --~~~------~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 164 --FSC------EQVRVFPALSTLDLSDNPEL----------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp --CCT------TTCCCCSSCCEEECCSCTTC----------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred --chH------HHhccCCCCCEEECCCCCcC----------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 010 23456677888888888742 112234444 6778888888888887640 02112334
Q ss_pred ccccccEEEEecccCCCcCC--CCCCCCccceeeccccc
Q 011151 340 SLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 340 ~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 376 (492)
.+++|+.|++++|.+.+..+ .+..+++|++|++++|.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 67888888888887766553 25567778888887775
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-21 Score=179.12 Aligned_cols=84 Identities=23% Similarity=0.190 Sum_probs=38.6
Q ss_pred cCCeeeEEecchhhhhhcccccc-ccCchh--hccCcCCEEEccCCCCccccchhhhcC-----CCCCeeecCccccccc
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIK-KIPTNI--EKLLHLKYLSLCGQREIEKLPETLCEL-----YNLERLNITSCNHLRE 192 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~-~l~~~~--~~l~~L~~L~L~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~ 192 (492)
.+++|++|+++ ++.+. .+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|.+...
T Consensus 93 ~l~~L~~L~L~-------~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 93 GISGLQELTLE-------NLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp TTSCCCEEEEE-------EEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred CcCCccEEEcc-------CCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 34455555555 44443 334333 445555555555555 33334444443 4555555555542222
Q ss_pred ccccccCCCCCcEEecCCCc
Q 011151 193 LPQGIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 193 lp~~~~~l~~L~~L~l~~~~ 212 (492)
.|..++.+++|++|++++|.
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCT
T ss_pred hHHHhccCCCCCEEECCCCC
Confidence 22444455555555555544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-20 Score=184.74 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=41.9
Q ss_pred eeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCC
Q 011151 124 CLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRK 202 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 202 (492)
+|++|+|+ ++.+..++ ..+.++++|++|++++|. +...++ +..+++|++|++++|. +..+|. .++
T Consensus 35 ~L~~L~Ls-------~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~ 100 (487)
T 3oja_A 35 NVKELDLS-------GNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPS 100 (487)
T ss_dssp GCCEEECC-------SSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTT
T ss_pred CccEEEee-------CCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCC
Confidence 56666666 55555543 345566666666666666 433332 5556666666666665 333332 255
Q ss_pred CcEEecCCCcc
Q 011151 203 LMYLDNDDTWF 213 (492)
Q Consensus 203 L~~L~l~~~~~ 213 (492)
|++|++++|.+
T Consensus 101 L~~L~L~~N~l 111 (487)
T 3oja_A 101 IETLHAANNNI 111 (487)
T ss_dssp CCEEECCSSCC
T ss_pred cCEEECcCCcC
Confidence 66666666544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=167.34 Aligned_cols=204 Identities=21% Similarity=0.211 Sum_probs=160.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccc-cccc-C
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF-IKKI-P 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l-~ 146 (492)
+++++++++++.+..++... +.++++|+.|++++|. +.+..+..|..+++|++|+++ ++. +..+ |
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~---~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLS-------DNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTTT---TTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SCTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCHHH---cccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCC-------CCCCccccCH
Confidence 68999999999998755432 2489999999999998 777668889999999999999 776 8777 5
Q ss_pred chhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIGEL 224 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 224 (492)
..+.++++|++|++++|. +..+ |..+.++++|++|++++|. +..++ ..++.+++|++|++++|.+....+..+..+
T Consensus 99 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 678999999999999999 5555 5668899999999999999 55554 458899999999999998865555568888
Q ss_pred ccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhh
Q 011151 225 INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRE 304 (492)
Q Consensus 225 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 304 (492)
++|+.|++..+..... . + ..+..+++|+.|++++|.+++..
T Consensus 177 ~~L~~L~l~~n~l~~~---~---------------------~-------~~~~~l~~L~~L~l~~n~l~~~~-------- 217 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHV---H---------------------P-------HAFRDLGRLMTLYLFANNLSALP-------- 217 (285)
T ss_dssp TTCCEEECCSSCCCEE---C---------------------T-------TTTTTCTTCCEEECCSSCCSCCC--------
T ss_pred cccCEEECCCCccccc---C---------------------H-------hHccCcccccEeeCCCCcCCcCC--------
Confidence 9999988876643320 0 0 23456678888888888865432
Q ss_pred HHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 305 SERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
+..+..+++|++|++++|.+..
T Consensus 218 ----~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 218 ----TEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ----HHHHTTCTTCCEEECCSSCEEC
T ss_pred ----HHHcccCcccCEEeccCCCccC
Confidence 2345677889999998888765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-20 Score=195.51 Aligned_cols=332 Identities=14% Similarity=0.062 Sum_probs=151.6
Q ss_pred CCCCceEEEeccCCccccccccchhhc-cCCeeeEEecchhhhhhccc-cccc--cCchhhccCcCCEEEccCCCCccc-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFD-KLTCLRALKLEVRQRWLCKN-FIKK--IPTNIEKLLHLKYLSLCGQREIEK- 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~--l~~~~~~l~~L~~L~L~~~~~~~~- 168 (492)
.+++|+.|++++|. +.+..+..+. .+++|++|+++ ++ .+.. ++..+.++++|++|++++|. ++.
T Consensus 103 ~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~L~~L~L~-------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~ 171 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV---VTDDCLELIAKSFKNFKVLVLS-------SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDV 171 (594)
T ss_dssp HCTTCCEEEEESCB---CCHHHHHHHHHHCTTCCEEEEE-------SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECC
T ss_pred hCCCCCeEEeeCcE---EcHHHHHHHHHhCCCCcEEeCC-------CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCc
Confidence 45666677776665 4443333342 56666777666 33 3332 33334466667777776666 332
Q ss_pred ----cchhhhcCCCCCeeecCccc-cc--ccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeeccc--
Q 011151 169 ----LPETLCELYNLERLNITSCN-HL--RELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGY-- 239 (492)
Q Consensus 169 ----lp~~~~~l~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-- 239 (492)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|.....++..+..+++|++|.+..+....
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 11112245566666666664 01 1122223345666666666663333345555555666666543221100
Q ss_pred -CCCcCccccc------------------------cccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCC
Q 011151 240 -DRARSLGSLK------------------------KLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRD 294 (492)
Q Consensus 240 -~~~~~~~~l~------------------------~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 294 (492)
........+. .+++|+.+.+..+. +.. ......+..+++|+.|++.++.
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~--~~l~~~~~~~~~L~~L~l~~~~--- 325 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQS--YDLVKLLCQCPKLQRLWVLDYI--- 325 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCH--HHHHHHHTTCTTCCEEEEEGGG---
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCH--HHHHHHHhcCCCcCEEeCcCcc---
Confidence 0000001112 23344444444333 111 1122223445555555555442
Q ss_pred CchhhHhhhhHHHHhhhcCCCCCccEEEEeec---------CCCccccCchhhhccccccEEEEecccCCCcCC-CC-CC
Q 011151 295 GDEEQARRRESERLLEALGPPPNLKELVIDEY---------RGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP-PL-GK 363 (492)
Q Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~-~l-~~ 363 (492)
....+......+++|++|++.++ ......+ ......+++|+.|.+..+.+..... .+ ..
T Consensus 326 ---------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 326 ---------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp ---------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-HHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-HHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 11222222223455555555331 1111001 1111235555555444443322111 11 13
Q ss_pred CCccceeecc-----ccccceeecc--cccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc-CCCCcce
Q 011151 364 LPSLESLYIE-----GMQSVKRVGN--EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII-IMPRLSF 435 (492)
Q Consensus 364 l~~L~~L~l~-----~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~L~~ 435 (492)
+++|+.|+++ +|..++..+. .+.. ....+++|+.|++++ .+.+..+ ..+. .+++|+.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~--------l~~~~~~L~~L~L~~--~l~~~~~-----~~l~~~~~~L~~ 460 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------IVEHCKDLRRLSLSG--LLTDKVF-----EYIGTYAKKMEM 460 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHH--------HHHHCTTCCEEECCS--SCCHHHH-----HHHHHHCTTCCE
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHH--------HHhhCCCccEEeecC--cccHHHH-----HHHHHhchhccE
Confidence 5666666666 3333332110 0000 012556777777654 2332221 1222 3788999
Q ss_pred EeecCCCCccc-CCcccCCCCCCCeEEEeCCCc
Q 011151 436 LEISGCCKLKA-LPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 436 L~l~~c~~l~~-l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|++++|..... ++.....+++|++|++++|+.
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 99988763222 222225689999999999986
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=160.74 Aligned_cols=220 Identities=21% Similarity=0.165 Sum_probs=138.8
Q ss_pred eecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCC
Q 011151 78 LHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLK 156 (492)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~ 156 (492)
+..+..+|..+. +.|+.|++++|. +....+..|..+++|++|+++ ++.+..++. .+.++++|+
T Consensus 16 ~~~l~~ip~~l~------~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~l~~L~ 79 (276)
T 2z62_A 16 ELNFYKIPDNLP------FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLS 79 (276)
T ss_dssp TSCCSSCCSSSC------TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECT-------TCCCCEECTTTTTTCTTCC
T ss_pred CCCccccCCCCC------CCccEEECCCCc---ccccCHhHhccccCCcEEECC-------CCcCCccCHHHccCCcCCC
Confidence 334444555443 568888888887 666555567888888888888 777777664 577888888
Q ss_pred EEEccCCCCccccc-hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc-cccccccccccccccceEE
Q 011151 157 YLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR-YLPVGIGELINLRRVTKFV 234 (492)
Q Consensus 157 ~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 234 (492)
+|++++|. +..++ ..+.++++|++|++++|......+..++.+++|++|++++|.+.. .+|..+..+++|+.|+++.
T Consensus 80 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 80 TLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 88888888 55544 557788888888888887433333357788888888888887654 2566777777777777766
Q ss_pred eecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcc-eEecccccCCCCchhhHhhhhHHHHhhhcC
Q 011151 235 VGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLV-ELGLHFDRLRDGDEEQARRRESERLLEALG 313 (492)
Q Consensus 235 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (492)
+..... ....+.. +..++.+. .+++++|.++. ++....
T Consensus 159 N~l~~~---~~~~~~~-------------------------l~~L~~l~l~L~ls~n~l~~-------------~~~~~~ 197 (276)
T 2z62_A 159 NKIQSI---YCTDLRV-------------------------LHQMPLLNLSLDLSLNPMNF-------------IQPGAF 197 (276)
T ss_dssp SCCCEE---CGGGGHH-------------------------HHTCTTCCEEEECCSSCCCE-------------ECTTSS
T ss_pred CCCCcC---CHHHhhh-------------------------hhhccccceeeecCCCcccc-------------cCcccc
Confidence 544320 0011111 11222222 56666666432 112222
Q ss_pred CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 314 PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
...+|++|++++|.+.. +++..+..+++|+.|++++|.+..+
T Consensus 198 ~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 198 KEIRLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CSCCEEEEECCSSCCSC--CCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCCcccEEECCCCceee--cCHhHhcccccccEEEccCCccccc
Confidence 33467777777776665 5444556677777777777755443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-19 Score=169.61 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=57.9
Q ss_pred ceEEEeccCCccccccccchhhccC--CeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc-cchhhh
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKL--TCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK-LPETLC 174 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~~~~ 174 (492)
++.++++++. +. +..+..+ +.++.|+++ ++.+...+..+.++++|++|++++|.+... +|..+.
T Consensus 49 ~~~l~l~~~~---~~---~~~~~~~~~~~l~~L~l~-------~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKN---LH---PDVTGRLLSQGVIAFRCP-------RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp SSEEECTTCB---CC---HHHHHHHHHTTCSEEECT-------TCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred heeecccccc---CC---HHHHHhhhhccceEEEcC-------CccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 4556665554 22 2334444 556666666 555555544455666666666666662222 555566
Q ss_pred cCCCCCeeecCcccccccccccccCCCCCcEEecCCC
Q 011151 175 ELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 211 (492)
.+++|++|++++|......|..++.+++|++|++++|
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 6666666666666644455555666666666666666
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-18 Score=156.25 Aligned_cols=204 Identities=17% Similarity=0.114 Sum_probs=113.5
Q ss_pred CeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCC
Q 011151 123 TCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKL 200 (492)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 200 (492)
++|++|+++ ++.+..++. .+.++++|++|++++|. +..++. .+.++++|++|++++|.+....+..+.++
T Consensus 28 ~~l~~L~ls-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLS-------FNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECT-------TCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECC-------CCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 457777777 777777664 57777777888887777 555543 56777777777777777433444557777
Q ss_pred CCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccC
Q 011151 201 RKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK 280 (492)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 280 (492)
++|++|++++|.+....+..+..+++|+.|++..+.... . .++ ..+..++
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~---------------------~l~-------~~~~~l~ 149 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--F---------------------KLP-------EYFSNLT 149 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--C---------------------CCC-------GGGGGCT
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccce--e---------------------cCc-------hhhccCC
Confidence 777777777776644433345555666666555443221 0 001 2345556
Q ss_pred CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCcc-EEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC
Q 011151 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLK-ELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP 359 (492)
Q Consensus 281 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~ 359 (492)
+|+.|++++|.+++... .....+..++.|. +|++++|.+.. + +.......+|+.|++++|.+....+
T Consensus 150 ~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~l~l~L~ls~n~l~~--~-~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYC---------TDLRVLHQMPLLNLSLDLSLNPMNF--I-QPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp TCCEEECCSSCCCEECG---------GGGHHHHTCTTCCEEEECCSSCCCE--E-CTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred CCCEEECCCCCCCcCCH---------HHhhhhhhccccceeeecCCCcccc--c-CccccCCCcccEEECCCCceeecCH
Confidence 66666666666532211 0111112222222 56666665554 4 2222233356666666665443333
Q ss_pred C-CCCCCccceeeccccc
Q 011151 360 P-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 360 ~-l~~l~~L~~L~l~~~~ 376 (492)
. +..+++|++|++++|+
T Consensus 218 ~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTTTCCSCCEEECCSSC
T ss_pred hHhcccccccEEEccCCc
Confidence 3 4556666666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=152.99 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=98.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++. +.++++|++|++++|. +..++ .+
T Consensus 39 ~l~~L~~L~l~~~~---i~~-l~~-~~~l~~L~~L~L~-------~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTG---VTT-IEG-VQYLNNLIGLELK-------DNQITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEEeeCCC---ccC-chh-hhccCCCCEEEcc-------CCcCCCChh-HccCCCCCEEEccCCc-CCCch-hh
Confidence 44555555555554 333 222 4555555555555 555555544 5555555555555555 44443 35
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..+++|++|++++|. +..++. +..+++|++|++++|.+... +. +
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l-------------------------------- 147 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNI-SP-L-------------------------------- 147 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCC-GG-G--------------------------------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcC-cc-c--------------------------------
Confidence 555555555555555 333433 55555555555555533211 11 2
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
..+++|+.|++++|.+++.. .+..+++|++|++++|.+.. +
T Consensus 148 -----------------------~~l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~--~ 188 (308)
T 1h6u_A 148 -----------------------AGLTNLQYLSIGNAQVSDLT--------------PLANLSKLTTLKADDNKISD--I 188 (308)
T ss_dssp -----------------------GGCTTCCEEECCSSCCCCCG--------------GGTTCTTCCEEECCSSCCCC--C
T ss_pred -----------------------cCCCCccEEEccCCcCCCCh--------------hhcCCCCCCEEECCCCccCc--C
Confidence 23345555555555543211 14455566666666665555 4
Q ss_pred CchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 334 PRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
+. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+
T Consensus 189 -~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 189 -SP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred -hh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 22 556666666666666544332 35566667777776665
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-17 Score=149.15 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=51.2
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
..+++|+.|++++|.++... ...+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+..
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLP------------KGVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCC------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCcCCCEEECCCCcCCccC------------HhHccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCCcCCc
Confidence 34455566666655543221 1224455666666666666665 544556677777777777776554
Q ss_pred cCCC-CCCCCccceeeccccc
Q 011151 357 HLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 357 ~~~~-l~~l~~L~~L~l~~~~ 376 (492)
..+. +..+++|+.|++++|+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHhccccCCCEEEecCCC
Confidence 4433 5667777777777765
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-19 Score=172.12 Aligned_cols=236 Identities=18% Similarity=0.133 Sum_probs=129.0
Q ss_pred CCCCceEEEeccCCccccccc----cchhhccCCeeeEEecchhhhhhccccccc----cCchh-------hccCcCCEE
Q 011151 94 GLRGLRSLLVESDDYSWFSEV----LPQLFDKLTCLRALKLEVRQRWLCKNFIKK----IPTNI-------EKLLHLKYL 158 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~----l~~~~-------~~l~~L~~L 158 (492)
.+++|+.|++++|. +... ++..+..+++|++|+|+ ++.+.. +|..+ ..+++|++|
T Consensus 30 ~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls-------~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT---IGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HCSCCCEEECTTSE---ECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred cCCCccEEECCCCC---CCHHHHHHHHHHHHhCCCccEEeCc-------ccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 67778888888876 4433 33345677888888887 544332 23333 567788888
Q ss_pred EccCCCCccc-----cchhhhcCCCCCeeecCccccccc----ccccccCC---------CCCcEEecCCCccc-cccc-
Q 011151 159 SLCGQREIEK-----LPETLCELYNLERLNITSCNHLRE----LPQGIGKL---------RKLMYLDNDDTWFL-RYLP- 218 (492)
Q Consensus 159 ~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~~-~~~~- 218 (492)
++++|. ++. +|..+..+++|++|++++|.+... ++..+..+ ++|++|++++|.+. ..++
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 888887 443 666677788888888888774322 22333334 77888888877664 2233
Q ss_pred --ccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHh-hhcccCCcceEecccccCCCC
Q 011151 219 --VGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRA-ELEKKKNLVELGLHFDRLRDG 295 (492)
Q Consensus 219 --~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~ 295 (492)
..+..+++|+.|++..+.... . ....... .+..+++|+.|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~--~-------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~- 230 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRP--E-------------------------GIEHLLLEGLAYCQELKVLDLQDNTFTH- 230 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCH--H-------------------------HHHHHHHTTGGGCTTCCEEECCSSCCHH-
T ss_pred HHHHHHhCCCcCEEECcCCCCCH--h-------------------------HHHHHHHHHhhcCCCccEEECcCCCCCc-
Confidence 234456666666665553321 0 0000111 34455556666666555311
Q ss_pred chhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc---cCchhhhc--cccccEEEEecccCCC----cCCC-C-CCC
Q 011151 296 DEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV---VPRNWVMS--LTNLRALLLKNCRNCE----HLPP-L-GKL 364 (492)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---l~~~~~~~--l~~L~~L~L~~~~~~~----~~~~-l-~~l 364 (492)
.....++..+..+++|++|++++|.+.... + +..+.. +++|+.|++++|.+.. .++. + .++
T Consensus 231 -------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 231 -------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAV-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp -------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH-HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH-HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 011334445555566666666666544310 1 222322 5566666666665444 1332 2 335
Q ss_pred Cccceeeccccc
Q 011151 365 PSLESLYIEGMQ 376 (492)
Q Consensus 365 ~~L~~L~l~~~~ 376 (492)
++|++|++++|.
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 566666666655
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-17 Score=150.97 Aligned_cols=198 Identities=20% Similarity=0.185 Sum_probs=110.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhccCcCCEEEccCCCCccccchh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKLLHLKYLSLCGQREIEKLPET 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~ 172 (492)
++++++.+++.++. ++. +|..+ .+.++.|+++ ++.+..++ ..+.++++|++|++++|. ++.++..
T Consensus 8 ~l~~l~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRN---LTA-LPPDL--PKDTTILHLS-------ENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp CSTTCCEEECTTSC---CSS-CCSCC--CTTCCEEECT-------TSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred ccCCccEEECCCCC---CCc-CCCCC--CCCCCEEEcC-------CCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 55666666666655 444 33222 1456666666 55555543 345666666666666666 5555442
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+.
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~------------------------------ 121 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------------ 121 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT------------------------------
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHc------------------------------
Confidence 556666666666665 455565556666666666666644322222233
Q ss_pred ccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc
Q 011151 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV 332 (492)
Q Consensus 253 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 332 (492)
++++|+.|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 122 -------------------------~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 122 -------------------------GLGELQELYLKGNELKTLP------------PGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp -------------------------TCTTCCEEECTTSCCCCCC------------TTTTTTCTTCCEEECTTSCCSC--
T ss_pred -------------------------CCCCCCEEECCCCCCCccC------------hhhcccccCCCEEECCCCcCCc--
Confidence 3344555555555543221 1223445566666666666655
Q ss_pred cCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 333 VPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 333 l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
+++..+..+++|+.|++++|.+....+.+..+++|+.|++++|+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 54445566777777777777655433335566677777777665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-19 Score=171.57 Aligned_cols=267 Identities=16% Similarity=0.103 Sum_probs=176.2
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCCcc----ccchhh-------hcCCC
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQREIE----KLPETL-------CELYN 178 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~----~lp~~~-------~~l~~ 178 (492)
++..+..+++|++|+|+ ++.+.. ++..+..+++|++|++++|. +. .+|..+ ..+++
T Consensus 24 l~~~l~~~~~L~~L~L~-------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS-------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECT-------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECC-------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 55667888889999998 776654 33446678899999998874 33 445444 67889
Q ss_pred CCeeecCcccccc----cccccccCCCCCcEEecCCCccccccccccc----cc---------ccccccceEEeecccCC
Q 011151 179 LERLNITSCNHLR----ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG----EL---------INLRRVTKFVVGGGYDR 241 (492)
Q Consensus 179 L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~l~~~~~~~~~ 241 (492)
|++|++++|.+.. .+|..+..+++|++|++++|.+....+..+. .+ ++|++|+++.+...
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--- 172 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--- 172 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT---
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC---
Confidence 9999999888544 3677788888999999998876433232222 22 44555544433221
Q ss_pred CcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhh-hcCCCCCccE
Q 011151 242 ARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLE-ALGPPPNLKE 320 (492)
Q Consensus 242 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~ 320 (492)
......+...+..+++|+.|++++|.+++. ....+.. .+..+++|++
T Consensus 173 ------------------------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--------g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 173 ------------------------NGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--------GIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp ------------------------GGGHHHHHHHHHHCTTCCEEECCSSCCCHH--------HHHHHHHTTGGGCTTCCE
T ss_pred ------------------------cHHHHHHHHHHHhCCCcCEEECcCCCCCHh--------HHHHHHHHHhhcCCCccE
Confidence 111112224567888999999999986421 1122333 7788999999
Q ss_pred EEEeecCCCc---cccCchhhhccccccEEEEecccCCCc----CCC-C--CCCCccceeecccccccee-----ecccc
Q 011151 321 LVIDEYRGRR---NVVPRNWVMSLTNLRALLLKNCRNCEH----LPP-L--GKLPSLESLYIEGMQSVKR-----VGNEF 385 (492)
Q Consensus 321 L~l~~~~~~~---~~l~~~~~~~l~~L~~L~L~~~~~~~~----~~~-l--~~l~~L~~L~l~~~~~l~~-----~~~~~ 385 (492)
|++++|.+.. ..+ +..+..+++|++|+|++|.+... ++. + +.+++|++|+|++|. +.. ++..+
T Consensus 221 L~Ls~n~l~~~g~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l 298 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSAL-AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI 298 (386)
T ss_dssp EECCSSCCHHHHHHHH-HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHH-HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH
Confidence 9999999841 115 67788999999999999987654 222 3 458999999999998 333 33322
Q ss_pred cCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 386 LGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 386 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
. ..+|+|+.|++++|+ +..... .+......+++++.+++..
T Consensus 299 ~-----------~~l~~L~~L~l~~N~-l~~~~~--~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 299 D-----------EKMPDLLFLELNGNR-FSEEDD--VVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp H-----------HHCTTCCEEECTTSB-SCTTSH--HHHHHHHHHHHHTCCEECC
T ss_pred H-----------hcCCCceEEEccCCc-CCcchh--HHHHHHHHhhhcCcchhhh
Confidence 1 257999999999987 433220 0001122456666666644
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=147.42 Aligned_cols=116 Identities=15% Similarity=0.239 Sum_probs=80.5
Q ss_pred EEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccc-ccccCc-hhhccC
Q 011151 76 LTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNF-IKKIPT-NIEKLL 153 (492)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~-~~~~l~ 153 (492)
+.+..+..+|. +. +.++.|++++|. +....+..|..+++|++|+++ ++. +..++. .+.+++
T Consensus 18 v~c~~l~~ip~-~~------~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~-------~n~~l~~i~~~~f~~l~ 80 (239)
T 2xwt_C 18 VTCKDIQRIPS-LP------PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVS-------IDVTLQQLESHSFYNLS 80 (239)
T ss_dssp EEECSCSSCCC-CC------TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEE-------CCSSCCEECTTTEESCT
T ss_pred eEccCccccCC-CC------CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCC-------CCCCcceeCHhHcCCCc
Confidence 34444665565 43 478888888877 666555567778888888888 665 777765 577788
Q ss_pred cCCEEEccC-CCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCc---EEecCCC
Q 011151 154 HLKYLSLCG-QREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLM---YLDNDDT 211 (492)
Q Consensus 154 ~L~~L~L~~-~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~l~~~ 211 (492)
+|++|++++ |. ++.+|. .+..+++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 81 ~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 81 KVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 888888887 66 666653 46677788888888777 555665 66666666 7777766
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-18 Score=164.02 Aligned_cols=225 Identities=17% Similarity=0.129 Sum_probs=153.4
Q ss_pred ceEEEEEEeecCCCcccccccCccCC--CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc--c
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGL--RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK--I 145 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--l 145 (492)
..+++++.++.+. +..+. .+ +.++.|++.++. +.+..+. +..+++|++|+++ ++.+.. +
T Consensus 48 ~~~~l~l~~~~~~--~~~~~----~~~~~~l~~L~l~~n~---l~~~~~~-~~~~~~L~~L~L~-------~~~l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTG----RLLSQGVIAFRCPRSF---MDQPLAE-HFSPFRVQHMDLS-------NSVIEVSTL 110 (336)
T ss_dssp TSSEEECTTCBCC--HHHHH----HHHHTTCSEEECTTCE---ECSCCCS-CCCCBCCCEEECT-------TCEECHHHH
T ss_pred hheeeccccccCC--HHHHH----hhhhccceEEEcCCcc---ccccchh-hccCCCCCEEEcc-------CCCcCHHHH
Confidence 4668888877766 44443 55 889999999987 6665555 5678999999999 777654 6
Q ss_pred CchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccc--cccccccCCCCCcEEecCCC-ccccc-ccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLR--ELPQGIGKLRKLMYLDNDDT-WFLRY-LPVGI 221 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~l 221 (492)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|..+. .++..+.++++|++|++++| .+... ++..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 7778899999999999998444777888899999999999994344 46777888999999999999 66543 55667
Q ss_pred cccc-cccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEeccccc-CCCCchhh
Q 011151 222 GELI-NLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR-LRDGDEEQ 299 (492)
Q Consensus 222 ~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~ 299 (492)
..++ +|+.|++..+.... . .......+..+++|+.|++++|. ++
T Consensus 191 ~~l~~~L~~L~l~~~~~~~--------------------------~--~~~l~~~~~~~~~L~~L~l~~~~~l~------ 236 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNL--------------------------Q--KSDLSTLVRRCPNLVHLDLSDSVMLK------ 236 (336)
T ss_dssp HHSCTTCCEEECCSCGGGS--------------------------C--HHHHHHHHHHCTTCSEEECTTCTTCC------
T ss_pred HhcccCCCEEEeCCCcccC--------------------------C--HHHHHHHHhhCCCCCEEeCCCCCcCC------
Confidence 7777 88888776653110 0 00111234456667777776665 22
Q ss_pred HhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecc
Q 011151 300 ARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNC 352 (492)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~ 352 (492)
...+..+..+++|++|++++|....+.. ...+..+++|+.|++++|
T Consensus 237 ------~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 ------NDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ------GGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS
T ss_pred ------HHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc
Confidence 1223344556677777777665222101 123556677777777766
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=150.43 Aligned_cols=85 Identities=22% Similarity=0.186 Sum_probs=48.3
Q ss_pred ccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCc
Q 011151 278 KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEH 357 (492)
Q Consensus 278 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~ 357 (492)
.+++|+.|++++|.+++.. +..+..+++|++|++++|.+.. +++..+..+++|+.|++++|.+..
T Consensus 155 ~l~~L~~L~l~~n~l~~~~------------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~- 219 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLP------------EGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC- 219 (272)
T ss_dssp TCTTCCEEECCSSCCCCCC------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCC-
T ss_pred cCccCCEEECCCCCcCccC------------HHHhcCCccCCEEECCCCcCCc--cCHHHHhCCcCCCEEEccCCCccc-
Confidence 3445555666555543221 1223455666666666666665 545556677777777777775432
Q ss_pred CCCCCCCCccceeeccccccceeec
Q 011151 358 LPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 358 ~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
.+++|+.|+++.|.....++
T Consensus 220 -----~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 220 -----TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp -----CTTTTHHHHHHHHHTGGGBB
T ss_pred -----cCcHHHHHHHHHHhCCCccc
Confidence 35567777776665433333
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=147.97 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=118.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..++ .+. .+++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++ .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~----~l~~L~~L~L~~n~---i~~-~~~-~~~l~~L~~L~L~-------~n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQ----YLNNLIGLELKDNQ---ITD-LAP-LKNLTKITELELS-------GNPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCCSCCEEECC-------SCCCSCCG-G
T ss_pred CCcCEEEeeCCCccCch-hhh----ccCCCCEEEccCCc---CCC-Chh-HccCCCCCEEEcc-------CCcCCCch-h
Confidence 58999999999988765 444 89999999999998 666 444 8999999999999 88888875 6
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|++|++++|.+.. ++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence 8899999999999999 787875 8999999999999998 666665 8899999999999997643 333 66666666
Q ss_pred ccceEEe
Q 011151 229 RVTKFVV 235 (492)
Q Consensus 229 ~L~l~~~ 235 (492)
.|++..+
T Consensus 177 ~L~l~~n 183 (308)
T 1h6u_A 177 TLKADDN 183 (308)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-17 Score=151.98 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=128.1
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET- 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~- 172 (492)
.+++|+.|.+.++. +.. ++. +..+++|++|+++ ++.+..++ .+.++++|++|++++|. +..++..
T Consensus 39 ~l~~L~~L~l~~~~---i~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSD---IKS-VQG-IQYLPNVRYLALG-------GNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECT-------TSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccceeeeeeCCCC---ccc-ccc-cccCCCCcEEECC-------CCCCCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 56667777777766 333 232 6667777777777 66666653 56667777777777776 5555443
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
+.++++|++|++++|.+....+..++.+++|++|++++|.+....+..+..+++|+.|+++.+....
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------- 171 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------------- 171 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-------------
Confidence 5667777777777777333333335667777777777776644444445666666666665543221
Q ss_pred ccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc
Q 011151 253 LLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV 332 (492)
Q Consensus 253 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 332 (492)
++. ..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+..
T Consensus 172 ------------~~~------~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 172 ------------LPE------GVFDKLTQLKDLRLYQNQLKSVP------------DGVFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp ------------CCT------TTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCBCC--
T ss_pred ------------cCH------HHhcCCccCCEEECCCCcCCccC------------HHHHhCCcCCCEEEccCCCccc--
Confidence 000 12445667777777777754332 2345667888888888876543
Q ss_pred cCchhhhccccccEEEEecccCCCcCCC-CCCCCc
Q 011151 333 VPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPS 366 (492)
Q Consensus 333 l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~ 366 (492)
.+++|+.|+++.|.+.+.+|. ++.++.
T Consensus 220 -------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 456788888888888777766 554443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=148.65 Aligned_cols=199 Identities=16% Similarity=0.067 Sum_probs=156.0
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..+|..+. +.++.|++++|. +....+..|..+++|++|+++ ++.+..++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~------~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP------KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-------RAELTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC------TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-------TSCCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC------CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECC-------CCccCcccCC
Confidence 577889999999988887654 789999999998 777677889999999999999 8888888764
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|.+....+..+..+++|
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 789999999999999 88999889999999999999999 55554 668999999999999998865555556788888
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... ++. ..+..+++|+.|++++|.++..+.
T Consensus 151 ~~L~L~~N~l~~-------------------------l~~------~~~~~l~~L~~L~L~~N~l~~ip~---------- 189 (290)
T 1p9a_G 151 EKLSLANNNLTE-------------------------LPA------GLLNGLENLDTLLLQENSLYTIPK---------- 189 (290)
T ss_dssp CEEECTTSCCSC-------------------------CCT------TTTTTCTTCCEEECCSSCCCCCCT----------
T ss_pred CEEECCCCcCCc-------------------------cCH------HHhcCcCCCCEEECCCCcCCccCh----------
Confidence 888877654332 111 124456677777777777765542
Q ss_pred HhhhcCCCCCccEEEEeecCCCc
Q 011151 308 LLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
.+...++|+.+.+++|....
T Consensus 190 ---~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 190 ---GFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ---TTTTTCCCSEEECCSCCBCC
T ss_pred ---hhcccccCCeEEeCCCCccC
Confidence 23345678888888777654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-17 Score=145.47 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=51.0
Q ss_pred ccccCchhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCC-Cccccccc
Q 011151 142 IKKIPTNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDD-TWFLRYLP 218 (492)
Q Consensus 142 ~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~-~~~~~~~~ 218 (492)
+..+|. +. .+|++|++++|. ++.+|. .+..+++|++|++++|..+..++ ..+.++++|++|++++ |.+....+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 455554 22 356666666666 555544 45566666666666664233333 2456666666666666 54433333
Q ss_pred ccccccccccccceEEeec
Q 011151 219 VGIGELINLRRVTKFVVGG 237 (492)
Q Consensus 219 ~~l~~l~~L~~L~l~~~~~ 237 (492)
..+..+++|+.|++..+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TSEECCTTCCEEEEEEECC
T ss_pred HHhCCCCCCCEEeCCCCCC
Confidence 4455566666666655543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-18 Score=162.62 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=121.3
Q ss_pred CCceEEEeccCCccccccccc----hhhccCC-eeeEEecchhhhhhcccccccc-Cchhhcc-----CcCCEEEccCCC
Q 011151 96 RGLRSLLVESDDYSWFSEVLP----QLFDKLT-CLRALKLEVRQRWLCKNFIKKI-PTNIEKL-----LHLKYLSLCGQR 164 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~----~~~~~~~-~L~~L~L~~~~~~~~~~~~~~l-~~~~~~l-----~~L~~L~L~~~~ 164 (492)
++|+.|++++|. +....+ ..+..++ +|++|+++ ++.+... +..+..+ ++|++|++++|.
T Consensus 22 ~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNN---LYSISTVELIQAFANTPASVTSLNLS-------GNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp TTCCEEECTTSC---GGGSCHHHHHHHHHTCCTTCCEEECC-------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCceEEEccCCC---CChHHHHHHHHHHHhCCCceeEEECc-------CCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 346667766666 444333 4455666 66666666 5555554 2333333 666666666666
Q ss_pred Cccc-cchh----hhcC-CCCCeeecCccccccccccc----ccC-CCCCcEEecCCCcccccc----cccccccc-ccc
Q 011151 165 EIEK-LPET----LCEL-YNLERLNITSCNHLRELPQG----IGK-LRKLMYLDNDDTWFLRYL----PVGIGELI-NLR 228 (492)
Q Consensus 165 ~~~~-lp~~----~~~l-~~L~~L~l~~~~~~~~lp~~----~~~-l~~L~~L~l~~~~~~~~~----~~~l~~l~-~L~ 228 (492)
++. .+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+.... +..+..++ +|+
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 432 2222 2233 56666666666633222222 223 246666666666554322 12222222 444
Q ss_pred ccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhccc-CCcceEecccccCCCCchhhHhhhhHHH
Q 011151 229 RVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK-KNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
.|+++.+.... .....+...+..+ ++|+.|++++|.+++.. ...
T Consensus 171 ~L~Ls~n~l~~---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------~~~ 215 (362)
T 3goz_A 171 SLNLRGNNLAS---------------------------KNCAELAKFLASIPASVTSLDLSANLLGLKS--------YAE 215 (362)
T ss_dssp EEECTTSCGGG---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------HHH
T ss_pred EeeecCCCCch---------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------HHH
Confidence 44444332221 1111122334445 47888888877754321 233
Q ss_pred HhhhcCC-CCCccEEEEeecCCCccccCc----hhhhccccccEEEEecccCCCc-------C-CCCCCCCccceeeccc
Q 011151 308 LLEALGP-PPNLKELVIDEYRGRRNVVPR----NWVMSLTNLRALLLKNCRNCEH-------L-PPLGKLPSLESLYIEG 374 (492)
Q Consensus 308 ~~~~l~~-~~~L~~L~l~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~-------~-~~l~~l~~L~~L~l~~ 374 (492)
++..+.. .++|++|++++|.+.. .++ ..+..+++|+.|++++|.+... + ..+..+++|+.|++++
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 4444444 3578888888777665 212 2234567788888877752211 1 1255677777778877
Q ss_pred cc
Q 011151 375 MQ 376 (492)
Q Consensus 375 ~~ 376 (492)
|.
T Consensus 294 N~ 295 (362)
T 3goz_A 294 KE 295 (362)
T ss_dssp CB
T ss_pred Cc
Confidence 76
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=145.98 Aligned_cols=201 Identities=21% Similarity=0.251 Sum_probs=142.4
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN- 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~- 148 (492)
..+.++++++.+..+|..+. +.++.|++++|. +....+..|..+++|++|+++ ++.+..+|..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~------~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP------ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLN-------DNKLQTLPAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECC-------SSCCSCCCTTT
T ss_pred CCCEEEccCCCCCccCCCCC------CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECC-------CCccCeeChhh
Confidence 34577788888887776543 678899999887 666556678888999999998 8888888765
Q ss_pred hhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
+.++++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|
T Consensus 81 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 5778899999999998 666665 46788899999999988444444557888999999999987754444446778888
Q ss_pred cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHH
Q 011151 228 RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESER 307 (492)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 307 (492)
+.|++..+.... ++. ..+..+++|+.|++++|.++....
T Consensus 160 ~~L~L~~n~l~~-------------------------~~~------~~~~~l~~L~~L~L~~N~l~~~~~---------- 198 (270)
T 2o6q_A 160 KELRLYNNQLKR-------------------------VPE------GAFDKLTELKTLKLDNNQLKRVPE---------- 198 (270)
T ss_dssp CEEECCSSCCSC-------------------------CCT------TTTTTCTTCCEEECCSSCCSCCCT----------
T ss_pred ceeEecCCcCcE-------------------------eCh------hHhccCCCcCEEECCCCcCCcCCH----------
Confidence 888776654332 010 124455667777777776665432
Q ss_pred HhhhcCCCCCccEEEEeecCCCc
Q 011151 308 LLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 308 ~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
..+..+++|+.|++++|....
T Consensus 199 --~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 199 --GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp --TTTTTCTTCCEEECCSSCBCC
T ss_pred --HHhccccCCCEEEecCCCeeC
Confidence 123456677777777776544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=150.45 Aligned_cols=228 Identities=18% Similarity=0.078 Sum_probs=137.6
Q ss_pred CCCCceEEEeccCCccc--cccccchhhccCCeeeEEecchhhhhhccccccc-cCchh--hccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRSLLVESDDYSW--FSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-IPTNI--EKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l~~~~--~~l~~L~~L~L~~~~~~~~ 168 (492)
....++.+.+.++.... +.. +.. +..+++|++|+++ ++.+.. .|..+ ..+++|++|++++|.+.+.
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~-------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVG-ALR-VLAYSRLKELTLE-------DLKITGTMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHH-HHH-HHHHSCCCEEEEE-------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred hhcceeEEEEeCCcCCHHHHHH-HHH-hcccCceeEEEee-------CCEeccchhhhhhhccCCCCCEEEeecccccch
Confidence 33456777777765221 111 111 2234568888888 666653 45555 7788888888888883333
Q ss_pred cc----hhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccc--cc--ccccccccccccceEEeecccC
Q 011151 169 LP----ETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRY--LP--VGIGELINLRRVTKFVVGGGYD 240 (492)
Q Consensus 169 lp----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~~~~~ 240 (492)
.+ ..+..+++|++|++++|.+....|..++.+++|++|++++|.+.+. ++ ..+..+++|+.|+++.+....
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 211 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET- 211 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-
Confidence 33 2345688888888888885445556777888888888888865432 21 122455666666655443211
Q ss_pred CCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCC---CC
Q 011151 241 RARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPP---PN 317 (492)
Q Consensus 241 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~---~~ 317 (492)
........+..+++|+.|++++|.+++. .+..+..+ ++
T Consensus 212 ---------------------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------------~p~~~~~~~~~~~ 252 (310)
T 4glp_A 212 ---------------------------PTGVCAALAAAGVQPHSLDLSHNSLRAT------------VNPSAPRCMWSSA 252 (310)
T ss_dssp ---------------------------HHHHHHHHHHHTCCCSSEECTTSCCCCC------------CCSCCSSCCCCTT
T ss_pred ---------------------------hHHHHHHHHhcCCCCCEEECCCCCCCcc------------chhhHHhccCcCc
Confidence 0000011245667888888888876433 12223333 67
Q ss_pred ccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccc
Q 011151 318 LKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 318 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 376 (492)
|++|++++|.+.. + |..+. ++|+.|++++|.+.+. |.+..+++|+.|++++|+
T Consensus 253 L~~L~Ls~N~l~~--l-p~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 253 LNSLNLSFAGLEQ--V-PKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCEECCSSCCCS--C-CSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CCEEECCCCCCCc--h-hhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 7888887777775 6 44442 6777888877765542 445667777777777776
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=149.15 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=48.5
Q ss_pred CccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCC
Q 011151 317 NLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDG 394 (492)
Q Consensus 317 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 394 (492)
.++.|++++|.+.. + +.......+|+.|++.+++..+.+|. +..+++|++|++++|. ++.++..
T Consensus 155 ~l~~L~L~~N~i~~--i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~---------- 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY---------- 220 (350)
T ss_dssp SCEEEECCSSCCCE--E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------
T ss_pred hhhhhccccccccC--C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------
Confidence 45556666665555 5 33232344556666655444444443 4555666666666554 4433321
Q ss_pred CcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 395 SSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 395 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
.+.+|+.|.+.++.+++.++ .+..+++|+.+++.+
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP-------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLP-------TLEKLVALMEASLTY 255 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCC-------CTTTCCSCCEEECSC
T ss_pred ----hhccchHhhhccCCCcCcCC-------CchhCcChhhCcCCC
Confidence 34445555444444444332 133455555555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-17 Score=156.41 Aligned_cols=241 Identities=11% Similarity=0.081 Sum_probs=167.4
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCC-CceEEEeccCCccccccccchhhccC-----CeeeEEecchhhhhhcccc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLR-GLRSLLVESDDYSWFSEVLPQLFDKL-----TCLRALKLEVRQRWLCKNF 141 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~ 141 (492)
.+++.+++++|.+...+ ..+...+..++ +|+.|++++|. +....+..+..+ ++|++|+++ ++.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---l~~~~~~~l~~~l~~~~~~L~~L~Ls-------~n~ 91 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS---LGFKNSDELVQILAAIPANVTSLNLS-------GNF 91 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC---GGGSCHHHHHHHHHTSCTTCCEEECC-------SSC
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC---CCHHHHHHHHHHHhccCCCccEEECc-------CCc
Confidence 56999999999988744 22223344788 99999999998 666555556554 899999999 888
Q ss_pred ccccCch-----hhcc-CcCCEEEccCCCCccccch-hh----hc-CCCCCeeecCcccccc----cccccccCCC-CCc
Q 011151 142 IKKIPTN-----IEKL-LHLKYLSLCGQREIEKLPE-TL----CE-LYNLERLNITSCNHLR----ELPQGIGKLR-KLM 204 (492)
Q Consensus 142 ~~~l~~~-----~~~l-~~L~~L~L~~~~~~~~lp~-~~----~~-l~~L~~L~l~~~~~~~----~lp~~~~~l~-~L~ 204 (492)
+...+.. +..+ ++|++|++++|. ++..+. .+ .. ..+|++|++++|.+.. .++..+..++ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 8765432 4445 899999999999 665443 33 33 3699999999998543 4455556666 999
Q ss_pred EEecCCCccccccccccc----cc-ccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcc-
Q 011151 205 YLDNDDTWFLRYLPVGIG----EL-INLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEK- 278 (492)
Q Consensus 205 ~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~- 278 (492)
+|++++|.+....+..+. .+ ++|+.|+++.+.... .....+...+..
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~---------------------------~~~~~l~~~l~~~ 223 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL---------------------------KSYAELAYIFSSI 223 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG---------------------------SCHHHHHHHHHHS
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh---------------------------hHHHHHHHHHhcC
Confidence 999999988665554443 34 578888777665432 000111233444
Q ss_pred cCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccC-------chhhhccccccEEEEec
Q 011151 279 KKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVP-------RNWVMSLTNLRALLLKN 351 (492)
Q Consensus 279 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~-------~~~~~~l~~L~~L~L~~ 351 (492)
.++|+.|++++|.+++.. ...+...+..+++|++|++++|.+.. +. +..+..+++|+.|++++
T Consensus 224 ~~~L~~L~Ls~N~l~~~~--------~~~l~~~~~~l~~L~~L~L~~n~l~~--i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPS--------LENLKLLKDSLKHLQTVYLDYDIVKN--MSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp CTTCCEEECCSSCCCCCC--------HHHHHHTTTTTTTCSEEEEEHHHHTT--CCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred CCCceEEECcCCCCCcHH--------HHHHHHHHhcCCCccEEEeccCCccc--cCHHHHHHHHHHhccCCceEEEecCC
Confidence 458999999999887653 24445566778899999999997433 21 22344778899999999
Q ss_pred ccCCCc
Q 011151 352 CRNCEH 357 (492)
Q Consensus 352 ~~~~~~ 357 (492)
|.+...
T Consensus 294 N~l~~~ 299 (362)
T 3goz_A 294 KEIHPS 299 (362)
T ss_dssp CBCCGG
T ss_pred CcCCCc
Confidence 876544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=145.72 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=131.5
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCEL 176 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l 176 (492)
++++.+++. ++. +|..+ .++++.|+|+ ++.+..+|. .|.++++|++|+|++|.+.+.+|. .+.++
T Consensus 12 ~~v~C~~~~---Lt~-iP~~l--~~~l~~L~Ls-------~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESK---VTE-IPSDL--PRNAIELRFV-------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTT---CCS-CCTTC--CTTCSEEEEE-------SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCC---CCc-cCcCc--CCCCCEEEcc-------CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 345555544 444 34322 2356666666 666666654 356666666666666663344443 24455
Q ss_pred CCCCee-ecCcccccccc-cccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 177 YNLERL-NITSCNHLREL-PQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 177 ~~L~~L-~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
++|+.+ .+++|. +..+ |..+..+++|++|++++|.+....+.......++..|.+..+
T Consensus 79 ~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------- 138 (350)
T 4ay9_X 79 PKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------- 138 (350)
T ss_dssp TTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-------------------
T ss_pred hhhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-------------------
Confidence 555543 333344 3333 344556666666666666443222222222222222222111
Q ss_pred CCceEecCCCCCChhhhhHhhhccc-CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEee-cCCCccc
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKK-KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDE-YRGRRNV 332 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~ 332 (492)
..+..++. ..+..+ ..++.|++++|.++. ++.......+|+++.+.+ +.+..
T Consensus 139 -----~~i~~l~~------~~f~~~~~~l~~L~L~~N~i~~-------------i~~~~f~~~~L~~l~l~~~n~l~~-- 192 (350)
T 4ay9_X 139 -----INIHTIER------NSFVGLSFESVILWLNKNGIQE-------------IHNSAFNGTQLDELNLSDNNNLEE-- 192 (350)
T ss_dssp -----TTCCEECT------TSSTTSBSSCEEEECCSSCCCE-------------ECTTSSTTEEEEEEECTTCTTCCC--
T ss_pred -----cccccccc------cchhhcchhhhhhccccccccC-------------CChhhccccchhHHhhccCCcccC--
Confidence 00111111 112233 468889999998642 334455567899999975 55555
Q ss_pred cCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccC
Q 011151 333 VPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYD 410 (492)
Q Consensus 333 l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 410 (492)
+++..+..+++|+.|++++|.+....+. .+.+|+.|.+.++..++.++. +..+++|+.+++.+
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-------------LEKLVALMEASLTY 255 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-------------TTTCCSCCEEECSC
T ss_pred CCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-------------chhCcChhhCcCCC
Confidence 7567789999999999999976544332 355677777767766666552 22788888888765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=150.66 Aligned_cols=228 Identities=17% Similarity=0.067 Sum_probs=159.3
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhh--ccCCeeeEEecchhhhhhcccccccc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLF--DKLTCLRALKLEVRQRWLCKNFIKKI 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~l 145 (492)
..++++.+....+.... ..+. .+..+++|+.|++++|. +.+..|..+ ..+++|++|+++ ++.+...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls-------~n~i~~~ 132 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLR-------NVSWATG 132 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEE-------SCCCSST
T ss_pred cceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEee-------cccccch
Confidence 45778888777665310 1111 11145779999999998 777677767 889999999999 8877652
Q ss_pred -C----chhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCccccccc--cc--ccccCCCCCcEEecCCCcccc
Q 011151 146 -P----TNIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRE--LP--QGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 146 -~----~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~--lp--~~~~~l~~L~~L~l~~~~~~~ 215 (492)
+ ..+..+++|++|++++|. +..+ |..+..+++|++|++++|.+... ++ ..+..+++|++|++++|.+.
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-
T ss_pred hhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-
Confidence 2 234578999999999999 5554 46788999999999999985432 33 22468999999999999773
Q ss_pred ccccc----ccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEeccccc
Q 011151 216 YLPVG----IGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDR 291 (492)
Q Consensus 216 ~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 291 (492)
.++.. +..+++|++|+++.+......+..+.. +..+++|+.|++++|.
T Consensus 211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~----------------------------~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR----------------------------CMWSSALNSLNLSFAG 262 (310)
T ss_dssp CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS----------------------------CCCCTTCCCEECCSSC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh----------------------------ccCcCcCCEEECCCCC
Confidence 33332 467788999988877655311111111 1223578888888888
Q ss_pred CCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 292 LRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
++.. +..+ .++|++|++++|.+.. + |. +..+++|+.|++++|.+.+
T Consensus 263 l~~l-------------p~~~--~~~L~~L~Ls~N~l~~--~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 263 LEQV-------------PKGL--PAKLRVLDLSSNRLNR--A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC-------------CSCC--CSCCSCEECCSCCCCS--C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCch-------------hhhh--cCCCCEEECCCCcCCC--C-ch-hhhCCCccEEECcCCCCCC
Confidence 6422 2233 2689999999998887 5 43 5688999999999886653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=133.58 Aligned_cols=154 Identities=23% Similarity=0.296 Sum_probs=84.7
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT- 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~- 147 (492)
..++.++++++.+..++.. .+.++++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..++.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLA-------NNQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCHh---HhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECC-------CCcccccChh
Confidence 4556666666665543321 11255666666666665 555445555666666666666 555555543
Q ss_pred hhhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
.+.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .++.+++|++|++++|.+....+..+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 34556666666666665 4444443 3556666666666665 333333 455566666666666655444444455556
Q ss_pred cccccceEEeec
Q 011151 226 NLRRVTKFVVGG 237 (492)
Q Consensus 226 ~L~~L~l~~~~~ 237 (492)
+|+.|++..+..
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 666665555543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-15 Score=128.03 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=123.4
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-cCc
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-IPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l~~ 147 (492)
++++.++++++.+..++ .+. .+++|+.|++++|. +.. ++ .+..+++|++|+++ ++.+.. .+.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~l~~n~---~~~-~~-~l~~l~~L~~L~l~-------~n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE----YAHNIKDLTINNIH---ATN-YN-PISGLSNLERLRIM-------GKDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG----GCTTCSEEEEESCC---CSC-CG-GGTTCTTCCEEEEE-------CTTCBGGGSC
T ss_pred CCccEEeccCCCccChH-HHh----cCCCCCEEEccCCC---CCc-ch-hhhcCCCCCEEEeE-------CCccCcccCh
Confidence 68999999999998766 454 89999999999996 444 33 48889999999999 888775 677
Q ss_pred hhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL 227 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 227 (492)
.+.++++|++|++++|.+.+..|..+..+++|++|++++|..+..+| .+..+++|++|++++|.+.. ++ .+..+++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 78999999999999999444577889999999999999998677777 58899999999999997744 44 67888999
Q ss_pred cccceEEeecc
Q 011151 228 RRVTKFVVGGG 238 (492)
Q Consensus 228 ~~L~l~~~~~~ 238 (492)
+.|++..+...
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 99988877543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-15 Score=134.47 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=138.7
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-h
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-N 148 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~ 148 (492)
..+.++++++.+..+|..+. +.++.|++++|. +.+..+..|..+++|++|+++ ++.+..++. .
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~------~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLD-------YNQLQTLSAGV 78 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC------TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-------TSCCCCCCTTT
T ss_pred CCeEEecCCCCccccCCCCC------CCCCEEEccCCC---cCccCHhHhcCcccCCEEECC-------CCcCCccCHhH
Confidence 34578888888888887654 689999999998 777777789999999999999 888888765 4
Q ss_pred hhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
+.++++|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 7899999999999999 666664 47889999999999998 555554 4688999999999999886555556888889
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCC
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLR 293 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 293 (492)
|+.|++..+.... ++. ..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~-------------------------~~~------~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQS-------------------------VPH------GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSC-------------------------CCT------TTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCc-------------------------cCH------HHHhCCCCCCEEEeeCCcee
Confidence 9988887764432 010 12456678888888888854
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=130.02 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=92.5
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-Cchhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~ 151 (492)
.++..++.+..+|..+. +.++.|++++|. +....+..|..+++|++|+|+ ++.+..+ |..+.+
T Consensus 15 ~v~c~~~~l~~iP~~l~------~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls-------~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP------ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLS-------NNQISELAPDAFQG 78 (220)
T ss_dssp EEECTTSCCSSCCSSCC------TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECC-------SSCCCEECTTTTTT
T ss_pred EEEcCCCCcCcCCCccC------cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECC-------CCcCCCcCHHHhhC
Confidence 44555555665555432 566777777766 555445556667777777777 6666665 455667
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRV 230 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 230 (492)
+++|++|++++|. +..+|.. +..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 7777777777776 5566554 4567777777777776433445556667777777777776654444456666666666
Q ss_pred ceEEeec
Q 011151 231 TKFVVGG 237 (492)
Q Consensus 231 ~l~~~~~ 237 (492)
++..+..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 6665544
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=130.11 Aligned_cols=149 Identities=26% Similarity=0.332 Sum_probs=111.1
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~ 150 (492)
+.++..++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+|+ ++.+..+|.. +.
T Consensus 22 ~~v~c~~~~l~~ip~~~~------~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-------~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP------TNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLG-------SNQLGALPVGVFD 85 (229)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTT
T ss_pred CEeEccCCCcCccCCCCC------CCCCEEEcCCCc---cCccCHHHhhCccCCcEEECC-------CCCCCCcChhhcc
Confidence 356666677777666543 778888888887 777667777888888888888 7778777744 57
Q ss_pred ccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 86 ~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 78888888888888 6666554 5778888888888888 6677877888888888888888775444455777788888
Q ss_pred cceEEeecc
Q 011151 230 VTKFVVGGG 238 (492)
Q Consensus 230 L~l~~~~~~ 238 (492)
|++..+...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 777766543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=127.62 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=117.2
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccc-hhhccCCeeeEEecchhhhhhccccccccCc-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLP-QLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NI 149 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~ 149 (492)
+.++++++.+..+|..+. +.++.|++++|. +....+ ..|..+++|++|+++ ++.+..++. .+
T Consensus 14 ~~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~ 77 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP------QYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFS-------NNKITDIEEGAF 77 (220)
T ss_dssp TEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECC-------SSCCCEECTTTT
T ss_pred CEeEeCCCCcccCccCCC------CCCCEEEcCCCc---CCccCchhhhccCCCCCEEECC-------CCcCCEECHHHh
Confidence 367788888887776554 456888998887 666433 457888889999998 888888765 58
Q ss_pred hccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
.++++|++|++++|. +..++. .+..+++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|+
T Consensus 78 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 78 EGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 888899999999998 665554 478888999999999885545577788889999999999888776677888888888
Q ss_pred ccceEEeecc
Q 011151 229 RVTKFVVGGG 238 (492)
Q Consensus 229 ~L~l~~~~~~ 238 (492)
.|++..+...
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 8888877654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=133.64 Aligned_cols=171 Identities=19% Similarity=0.210 Sum_probs=99.0
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. ++. +..+++|++|+++ ++.+..++. +.++++|++|++++|. ++.+|. +
T Consensus 44 ~l~~L~~L~l~~~~---i~~-~~~-~~~l~~L~~L~L~-------~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l 108 (291)
T 1h6t_A 44 ELNSIDQIIANNSD---IKS-VQG-IQYLPNVTKLFLN-------GNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-L 108 (291)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-G
T ss_pred hcCcccEEEccCCC---ccc-Chh-HhcCCCCCEEEcc-------CCccCCCcc-cccCCCCCEEECCCCc-CCCChh-h
Confidence 45666666666665 333 232 5666666666666 666666554 6666666666666666 555543 6
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..+++|++|++++|. +..++ .+..+++|++|++++|.+... ..+..+++|+.|+++.+....
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-------------- 170 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------------- 170 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--------------
T ss_pred ccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc--------------
Confidence 666666666666666 44443 356666666666666655332 344555555555554432221
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (492)
. ..+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+..
T Consensus 171 -----------~--------~~l~~l~~L~~L~L~~N~i~~l~--------------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 -----------I--------VPLAGLTKLQNLYLSKNHISDLR--------------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -----------C--------GGGTTCTTCCEEECCSSCCCBCG--------------GGTTCTTCSEEEEEEEEEEC
T ss_pred -----------c--------hhhcCCCccCEEECCCCcCCCCh--------------hhccCCCCCEEECcCCcccC
Confidence 0 01334556667777777665331 24566777777777776665
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=132.17 Aligned_cols=145 Identities=22% Similarity=0.269 Sum_probs=121.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+.+.++.+..++. +. .+++|+.|++++|. +.+ ++. +..+++|++|+++ ++.+..++.
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~----~l~~L~~L~L~~n~---l~~-~~~-l~~l~~L~~L~l~-------~n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQ----YLPNVTKLFLNGNK---LTD-IKP-LANLKNLGWLFLD-------ENKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCGGG-
T ss_pred CcccEEEccCCCcccChh-Hh----cCCCCCEEEccCCc---cCC-Ccc-cccCCCCCEEECC-------CCcCCCChh-
Confidence 588999999999887643 44 89999999999998 666 344 8899999999999 888888765
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. +..++ .+..+++|++|++++|. +..+ ..++.+++|++|++++|.+....+ +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 8899999999999999 77774 58899999999999998 5555 468899999999999998755433 88888999
Q ss_pred ccceEEeec
Q 011151 229 RVTKFVVGG 237 (492)
Q Consensus 229 ~L~l~~~~~ 237 (492)
.|+++.+..
T Consensus 182 ~L~L~~N~i 190 (291)
T 1h6t_A 182 NLYLSKNHI 190 (291)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 988876644
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=125.42 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. +| .+..+++|++|+++ ++.+..++ .+..+++|++|++++|.+....|..+
T Consensus 42 ~l~~L~~L~l~~n~---i~~-l~-~l~~l~~L~~L~l~-------~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANIN---VTD-LT-GIEYAHNIKDLTIN-------NIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSC---CSC-CT-TGGGCTTCSEEEEE-------SCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCC---ccC-hH-HHhcCCCCCEEEcc-------CCCCCcch-hhhcCCCCCEEEeECCccCcccChhh
Confidence 56777788887776 443 44 36777778888887 66555553 56677778888887777333456667
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
..+++|++|++++|.+....|..++.+++|++|++++|.....+| .+..+++|+.|++..+
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 777777777777777554566667777777777777775334444 4555666666655444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=143.31 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=87.0
Q ss_pred ccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccC
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGK 199 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 199 (492)
..+++|+.|+++ ++.+..++ .+..+++|+.|+|++|. +..++. +..+++|+.|++++|. +..+| .+..
T Consensus 40 ~~L~~L~~L~l~-------~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIAN-------NSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHTTCCCCBCT-------TCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hcCCCCCEEECc-------CCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 344555555555 55555554 35555555555555555 444443 5555555555555555 33333 3555
Q ss_pred CCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhccc
Q 011151 200 LRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKK 279 (492)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 279 (492)
+++|++|++++|.+.. + ..+..+++|+.|+++.+.... + ..+..+
T Consensus 108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-----l----------------------------~~l~~l 152 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-----I----------------------------TVLSRL 152 (605)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-----C----------------------------GGGGSC
T ss_pred CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-----c----------------------------hhhccc
Confidence 5555555555554432 1 234444445544444332211 0 113344
Q ss_pred CCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 280 KNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 280 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
++|+.|++++|.+.+.. . +..+++|+.|+|++|.+.. + + .+..+++|+.|+|++|.+..
T Consensus 153 ~~L~~L~Ls~N~l~~~~-------------~-l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIV-------------P-LAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSSCCCCCG-------------G-GTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCcCCCch-------------h-hccCCCCCEEECcCCCCCC--C-h-HHccCCCCCEEEccCCcCcC
Confidence 55666666665543221 1 4455666666666665555 3 2 35566666666666665443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=123.17 Aligned_cols=148 Identities=23% Similarity=0.362 Sum_probs=81.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..++... +..+++|+.|++++|. +....+..|..+++|++|+++ ++.+..++..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls-------~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLS-------TNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCChhh---hcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECC-------CCcCCccCHh
Confidence 45666666666665544322 1255666666666665 444444445666666666666 5566555543
Q ss_pred -hhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccc
Q 011151 149 -IEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELI 225 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 225 (492)
+.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+. +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 4566666666666666 4444443 4556666666666665 333333 3555666666666666332 2344
Q ss_pred cccccceEEeecc
Q 011151 226 NLRRVTKFVVGGG 238 (492)
Q Consensus 226 ~L~~L~l~~~~~~ 238 (492)
+|+.|.+..+...
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 5555555544443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=125.92 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=122.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++++.+++.++.+..++ .+. .+++|+.|++++|. +.+ ++. +..+++|+.|+++ ++.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~L~~N~---i~~-~~~-l~~l~~L~~L~L~-------~N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQ----FFTNLKELHLSHNQ---ISD-LSP-LKDLTKLEELSVN-------RNRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCSSCCEEECC-------SSCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-HHh----hCCCCCEEECCCCc---cCC-Chh-hccCCCCCEEECC-------CCccCCcCcc
Confidence 58899999999988765 444 88999999999998 666 444 8899999999999 8888888754
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
.. ++|++|++++|. +..++ .+..+++|++|++++|. +..++ .++.+++|++|++++|.+... ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 33 899999999999 77775 58899999999999998 66666 588999999999999987554 5688899999
Q ss_pred ccceEEeeccc
Q 011151 229 RVTKFVVGGGY 239 (492)
Q Consensus 229 ~L~l~~~~~~~ 239 (492)
.|++..+....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99999887664
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=121.59 Aligned_cols=146 Identities=24% Similarity=0.296 Sum_probs=117.5
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~ 151 (492)
.+...++.+..+|..+ .++|+.|++++|. +....+..|..+++|++|+++ ++.+..++.. +.+
T Consensus 11 ~v~c~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI------PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLG-------GNKLQSLPNGVFNK 74 (208)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEecCCCccCCCCCC------CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECC-------CCccCccChhhcCC
Confidence 5666667777766654 3689999999998 777666778899999999999 8888888765 688
Q ss_pred cCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 152 LLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
+++|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 9999999999999 7777654 6889999999999998 555554 4788999999999999876544445778888888
Q ss_pred cceEEee
Q 011151 230 VTKFVVG 236 (492)
Q Consensus 230 L~l~~~~ 236 (492)
|++..+.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8877664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=129.70 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=108.6
Q ss_pred cCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCC
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKL 200 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 200 (492)
.+..+..++++ ++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+
T Consensus 17 ~l~~l~~l~l~-------~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLG-------KQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHT-------CSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhc-------CCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 45556667777 67777766 56777888888888887 77776 57778888888888877 555555 7777
Q ss_pred CCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccC
Q 011151 201 RKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKK 280 (492)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 280 (492)
++|++|++++|.+.. +|. +.. +
T Consensus 85 ~~L~~L~L~~N~l~~-l~~-~~~--------------------------------------------------------~ 106 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNG-IPS--------------------------------------------------------A 106 (263)
T ss_dssp SSCCEEECCSSCCSC-CTT-CCC--------------------------------------------------------S
T ss_pred CCCCEEECCCCccCC-cCc-ccc--------------------------------------------------------C
Confidence 888888887775421 111 000 3
Q ss_pred CcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC
Q 011151 281 NLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP 360 (492)
Q Consensus 281 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~ 360 (492)
+|+.|++++|.+++. ..+..+++|+.|++++|.+.. + + .+..+++|+.|++++|.+.+. +.
T Consensus 107 ~L~~L~L~~N~l~~~--------------~~l~~l~~L~~L~Ls~N~i~~--~-~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT--------------DSLIHLKNLEILSIRNNKLKS--I-V-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp SCCEEECCSSCCSBS--------------GGGTTCTTCCEEECTTSCCCB--C-G-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred cccEEEccCCccCCC--------------hhhcCcccccEEECCCCcCCC--C-h-HHccCCCCCEEECCCCcCcch-HH
Confidence 455555555554321 234556666666666666665 4 3 466777777777777765544 55
Q ss_pred CCCCCccceeeccccc
Q 011151 361 LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 361 l~~l~~L~~L~l~~~~ 376 (492)
+..+++|+.|++++|.
T Consensus 168 l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp STTCCCCCEEEEEEEE
T ss_pred hccCCCCCEEeCCCCc
Confidence 6777777888777776
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-14 Score=118.05 Aligned_cols=128 Identities=23% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc-cchhh
Q 011151 96 RGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK-LPETL 173 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~~~ 173 (492)
++|+.|++++|. +. +.+|..+..+++|++|+++ ++.+..+ ..+..+++|++|++++|. +.. +|..+
T Consensus 24 ~~L~~L~l~~n~---l~~~~i~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLI-------NVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLA 91 (168)
T ss_dssp TSCSEEECCSCB---CBTTBCSSCCGGGGGCCEEEEE-------SSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHH
T ss_pred ccCCEEECCCCC---CChhhHHHHHHhCCCCCEEeCc-------CCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHH
Confidence 445555555554 33 2244444555555555555 4445444 444555555555555555 333 44444
Q ss_pred hcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCccccccc---ccccccccccccceEEee
Q 011151 174 CELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLP---VGIGELINLRRVTKFVVG 236 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~ 236 (492)
..+++|++|++++|. +..+| ..+..+++|++|++++|.+....+ ..+..+++|+.|++..+.
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 445555555555555 33333 345555555555555554432222 234455555555555443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-14 Score=116.63 Aligned_cols=127 Identities=22% Similarity=0.222 Sum_probs=88.1
Q ss_pred CCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccc-cch
Q 011151 94 GLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEK-LPE 171 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~ 171 (492)
..++++.|++++|. +. +.+|..+..+++|++|+++ ++.+..+ ..+.++++|++|++++|. +.. +|.
T Consensus 15 ~~~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~-------~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTI-------NVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECT-------TSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CCccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECc-------CCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 34667777777776 55 3466666777788888887 6777666 567777788888888887 444 666
Q ss_pred hhhcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCccccccc---ccccccccccccceE
Q 011151 172 TLCELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLP---VGIGELINLRRVTKF 233 (492)
Q Consensus 172 ~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 233 (492)
.+..+++|++|++++|. +..+| ..++.+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66677888888888877 44443 667778888888888876644333 346667777776653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-14 Score=140.32 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=70.2
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
+++.+++.++.+..+|..+. ++|+.|++++|. +.. +| ..+++|++|+++ +|.+..+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~------~~L~~L~Ls~N~---l~~-ip---~~l~~L~~L~Ls-------~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP------PQITVLEITQNA---LIS-LP---ELPASLEYLDAC-------DNRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC------TTCSEEECCSSC---CSC-CC---CCCTTCCEEECC-------SSCCSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhHc------CCCCEEECcCCC---Ccc-cc---cccCCCCEEEcc-------CCCCCCcch-h
Confidence 45566666666555444332 456666666665 333 33 234556666666 555555555 4
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
.+ +|++|++++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.+.. +|. +. ++|+.
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 33 56666666665 444554 45566666666665 344554 34556666666665432 443 33 45555
Q ss_pred cceEEe
Q 011151 230 VTKFVV 235 (492)
Q Consensus 230 L~l~~~ 235 (492)
|+++.|
T Consensus 185 L~Ls~N 190 (571)
T 3cvr_A 185 LDVSTN 190 (571)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 554444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.4e-14 Score=141.08 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=29.2
Q ss_pred cccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcc
Q 011151 139 KNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 139 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
++.+..+|..+. ++|++|++++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|++|++++|.+
T Consensus 68 ~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 68 RLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp SSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCC
T ss_pred CCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcC
Confidence 444444444331 445555555554 44444 234445555555544 333444 332 455555555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=140.71 Aligned_cols=144 Identities=23% Similarity=0.281 Sum_probs=79.0
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
.++.|.+.++.+..++ .+. .+++|+.|++++|. +.+ ++. +..+++|+.|+|+ ++.+..+| .+
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~Ls~N~---l~~-~~~-l~~l~~L~~L~Ls-------~N~l~~l~-~l 105 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LTNLKNLGWLFLD-------ENKIKDLS-SL 105 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGG----GCTTCCEEECTTSC---CCC-CGG-GGGCTTCCEEECC-------SSCCCCCT-TS
T ss_pred CCCEEECcCCCCCCCh-HHc----cCCCCCEEEeeCCC---CCC-Chh-hccCCCCCEEECc-------CCCCCCCh-hh
Confidence 5555555555555433 222 56666666666665 444 222 5556666666666 55555544 45
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
..+++|++|+|++|. +..++ .+..+++|+.|++++|. +..+ ..+..+++|+.|++++|.+....| +..+++|+.
T Consensus 106 ~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 556666666666665 44443 35556666666666665 3333 335566666666666665543333 555556666
Q ss_pred cceEEeec
Q 011151 230 VTKFVVGG 237 (492)
Q Consensus 230 L~l~~~~~ 237 (492)
|+++.+..
T Consensus 180 L~Ls~N~i 187 (605)
T 1m9s_A 180 LYLSKNHI 187 (605)
T ss_dssp EECCSSCC
T ss_pred EECcCCCC
Confidence 65555543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=117.22 Aligned_cols=131 Identities=25% Similarity=0.296 Sum_probs=111.5
Q ss_pred cceEEEEEEeecCC--CcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-c
Q 011151 69 KKILHLLLTLHRGA--SVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-I 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l 145 (492)
++++.+++.++.+. .++..+. .+++|+.|++++|. +... ..+..+++|++|+++ ++.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELS-------ENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEE-------SCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECc-------CCcCchHH
Confidence 68999999999988 5665554 89999999999998 6663 558899999999999 888888 7
Q ss_pred CchhhccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecCCCccccccc
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDNDDTWFLRYLP 218 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~~ 218 (492)
|..+.++++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~ 163 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED-QEAP 163 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS-CBCC
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh-hhcc
Confidence 7777789999999999999 78776 678999999999999999 566665 788999999999999966 3344
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=119.42 Aligned_cols=131 Identities=23% Similarity=0.341 Sum_probs=114.1
Q ss_pred cceEEEEEEeecCCCcc-cccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.+++.+++++|.+..++ ..+ ..+++|+.|++++|. +....+..|..+++|++|+|+ +|.+..++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls-------~N~l~~l~~ 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF----DSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLG-------TNQLTVLPS 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCT
T ss_pred CCCCEEEcCCCccCccCHHHh----hCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECC-------CCcCCccCh
Confidence 68999999999998853 334 389999999999998 777566778999999999999 899999876
Q ss_pred h-hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc-ccccCCCCCcEEecCCCcccc
Q 011151 148 N-IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP-QGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 148 ~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~ 215 (492)
. +..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|.+..
T Consensus 106 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5 6899999999999999 88999999999999999999999 55555 458899999999999997643
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=119.03 Aligned_cols=132 Identities=23% Similarity=0.319 Sum_probs=112.9
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
+.++.|.+.+|.+..++.. .+..+++|+.|++++|. +....|..|..+++|++|+|+ ++.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---AFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLY-------GNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---SSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECC-------SSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHh---HhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECC-------CCcCCccCHh
Confidence 6899999999999876542 23489999999999998 788778889999999999999 9999999876
Q ss_pred -hhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccc
Q 011151 149 -IEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 214 (492)
+.++++|++|++++|. +..+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6889999999999999 6655 567889999999999999944444455889999999999999763
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=129.61 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=57.6
Q ss_pred CceEEEeccCCccccccccchhhc-cCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hh
Q 011151 97 GLRSLLVESDDYSWFSEVLPQLFD-KLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TL 173 (492)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~ 173 (492)
.++.|++++|. +....+..|. .+++|+.|+|+ ++.+..++. .+.++++|++|+|++|. +..++. .+
T Consensus 40 ~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~-------~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLS-------HNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSC---CCEECTTSSSSCCTTCCEEECC-------SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCEEECCCCC---CCccChhhhhhcccccCEEECC-------CCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 34455555554 4443333333 45555555555 444444442 24455555555555555 333332 24
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccc----cccccccccceEEeec
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGI----GELINLRRVTKFVVGG 237 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~ 237 (492)
..+++|++|++++|.+....|..+..+++|++|++++|.+.. +|..+ ..+++|+.|+++.+..
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence 445555555555555222223444455555555555554422 22221 3344555555444433
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=117.05 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=113.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++.+.+++|.+..++.. ..+.++++|+.|++++|. +....+..|..+++|++|+++ ++.+..++..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLT-------SNRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECC-------CCccCccCHh
Confidence 5678999999999875321 112489999999999998 778667789999999999999 8999888764
Q ss_pred -hhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc
Q 011151 149 -IEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 215 (492)
+.++++|++|++++|. +..+ |..+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8899999999999999 6655 6678999999999999999555558889999999999999997653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=114.47 Aligned_cols=129 Identities=23% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++|+.|++++|. +.. ++......++|++|+++ ++.+..+ ..+.++++|++|++++|. +..+|..+
T Consensus 17 ~~~~L~~L~l~~n~---l~~-i~~~~~~~~~L~~L~Ls-------~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYK---IPV-IENLGATLDQFDAIDFS-------DNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSC---CCS-CCCGGGGTTCCSEEECC-------SSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCCceEEEeeCCC---Cch-hHHhhhcCCCCCEEECC-------CCCCCcc-cccccCCCCCEEECCCCc-ccccCcch
Confidence 66777777777776 444 34423333477777777 6777666 456777777777777777 66666543
Q ss_pred -hcCCCCCeeecCcccccccccc--cccCCCCCcEEecCCCccccccccc----ccccccccccceEEeec
Q 011151 174 -CELYNLERLNITSCNHLRELPQ--GIGKLRKLMYLDNDDTWFLRYLPVG----IGELINLRRVTKFVVGG 237 (492)
Q Consensus 174 -~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~ 237 (492)
..+++|++|++++|. +..+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|++..+..
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 677777777777777 566665 5677777777777777663 44443 66777777777766543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=112.54 Aligned_cols=124 Identities=27% Similarity=0.347 Sum_probs=105.7
Q ss_pred cceEEEEEEeecCC--CcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-c
Q 011151 69 KKILHLLLTLHRGA--SVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-I 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l 145 (492)
++++++++.++.+. .++..+. .+++|+.|++++|. +... ..+..+++|++|+++ ++.+.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls-------~n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD----EFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELS-------DNRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT----TCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECC-------SSCCCSCT
T ss_pred ccCeEEEccCCcCChhHHHHHHh----hcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECC-------CCcccchH
Confidence 68999999999988 4665544 89999999999998 6663 558899999999999 888888 7
Q ss_pred CchhhccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecCC
Q 011151 146 PTNIEKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDNDD 210 (492)
Q Consensus 146 ~~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~ 210 (492)
|..+.++++|++|++++|. ++.+| ..+..+++|++|++++|. +...|. .+..+++|++|++++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 7777889999999999999 77664 779999999999999998 555554 688999999999863
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.3e-13 Score=127.03 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=115.1
Q ss_pred cceEEEEEEeecCCCcccccccCcc-CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVK-GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
..++.|++++|.+..++...+ . ++++|+.|++++|. +....+..|..+++|++|+|+ +|.+..++.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~---~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-------~N~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWT---PTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLS-------SNHLHTLDE 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSS---SSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECT
T ss_pred CCCCEEECCCCCCCccChhhh---hhcccccCEEECCCCc---CCccChhhccCCCCCCEEECC-------CCcCCcCCH
Confidence 567889999888887554432 3 67889999999888 777666778888999999998 888888765
Q ss_pred -hhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccc----cCCCCCcEEecCCCcccccccccc
Q 011151 148 -NIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGI----GKLRKLMYLDNDDTWFLRYLPVGI 221 (492)
Q Consensus 148 -~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~l 221 (492)
.+.++++|++|+|++|. +..+ |..+..+++|+.|++++|. +..+|..+ ..+++|++|++++|.+....+..+
T Consensus 106 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 183 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH
T ss_pred HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh
Confidence 47888999999999998 5555 5568888999999999988 66676654 568899999999987754433455
Q ss_pred ccccc--ccccceEEeec
Q 011151 222 GELIN--LRRVTKFVVGG 237 (492)
Q Consensus 222 ~~l~~--L~~L~l~~~~~ 237 (492)
..++. ++.|++..+..
T Consensus 184 ~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHSCHHHHTTEECCSSCE
T ss_pred hhccHhhcceEEecCCCc
Confidence 56655 35666665543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-12 Score=120.17 Aligned_cols=126 Identities=14% Similarity=0.195 Sum_probs=79.2
Q ss_pred CCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccccceeecccccCCcCCC
Q 011151 314 PPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDT 392 (492)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 392 (492)
...++..+.+.+.-...+ . ......+++|+.++|.+|......+. +.++++|+.+++.++ ++.++...+.
T Consensus 200 ~~~~~~~l~~~~~l~~~~-~-~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----- 270 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNAD-F-KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----- 270 (329)
T ss_dssp CGGGCSEEEEEECCCHHH-H-HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----
T ss_pred CccccceEEEeeeecHHH-H-HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----
Confidence 345566666665432221 1 11122477788888887755443333 777788888888765 6666665544
Q ss_pred CCCccccccccc-ceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEE
Q 011151 393 DGSSIIAFPKLK-HLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLI 462 (492)
Q Consensus 393 ~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l 462 (492)
.+++|+ .+.+.+ +++.+.- .++..|++|+.|++++ +.++.++ ..+.++++|+.++.
T Consensus 271 ------~~~~L~~~l~l~~--~l~~I~~-----~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 ------NCGRLAGTLELPA--SVTAIEF-----GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------TCTTCCEEEEECT--TCCEECT-----TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ------CChhccEEEEEcc--cceEEch-----hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 667777 777765 3444321 3566888999999877 5667665 46777888888763
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-13 Score=141.07 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
.++.|+.|++++|. +.. +|..+..+++|++|+|+ +|.+..+|..+.++++|++|+|++|. +..+|..+
T Consensus 222 ~l~~L~~L~Ls~n~---l~~-l~~~~~~l~~L~~L~Ls-------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 289 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ---IFN-ISANIFKYDFLTRLYLN-------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL 289 (727)
T ss_dssp CCCCCCEEECTTSC---CSC-CCGGGGGCCSCSCCBCT-------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG
T ss_pred cCCCCcEEECCCCC---CCC-CChhhcCCCCCCEEEee-------CCcCcccChhhhCCCCCCEEeCcCCc-CCccChhh
Confidence 55666666666665 443 33334456666666666 55666666666666666666666666 55666666
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGI 221 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l 221 (492)
+.+++|++|++++|. +..+|..++.+++|++|++++|.+.+.+|..+
T Consensus 290 ~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 666666666666665 45566666666666666666665554444443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=112.06 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=98.6
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccch-hhccCCeeeEEecchhhhhhcccccccc-Cchh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQ-LFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNI 149 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~ 149 (492)
+.++++++.+..+|..+. +.++.|++++|. +....+. .|..+++|++|+++ ++.+..+ |..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~------~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP------LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELK-------RNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCCC------TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECC-------SSCCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCCC------CCCCEEECCCCc---CCccCCccccccCCCCCEEECC-------CCCCCCcCHhHc
Confidence 467788888887777654 388889998887 6664443 47888889999998 8888776 5678
Q ss_pred hccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLR 215 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 215 (492)
.++++|++|++++|. +..++. .+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888899999999988 555544 47788889999999888555667778888899999998887643
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=111.27 Aligned_cols=127 Identities=19% Similarity=0.160 Sum_probs=109.0
Q ss_pred cceEEEEEEeecCCCcccccccCccCC-CCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGL-RGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 147 (492)
.+++.+++.++.+..++. +. .+ ++|+.|++++|. +.+ + ..+..+++|++|+++ +|.+..+|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~----~~~~~L~~L~Ls~N~---l~~-~-~~l~~l~~L~~L~Ls-------~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LG----ATLDQFDAIDFSDNE---IRK-L-DGFPLLRRLKTLLVN-------NNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GG----GGTTCCSEEECCSSC---CCE-E-CCCCCCSSCCEEECC-------SSCCCEECS
T ss_pred CCceEEEeeCCCCchhHH-hh----hcCCCCCEEECCCCC---CCc-c-cccccCCCCCEEECC-------CCcccccCc
Confidence 689999999999987643 33 44 499999999998 665 3 448999999999999 999999986
Q ss_pred hh-hccCcCCEEEccCCCCccccch--hhhcCCCCCeeecCccccccccccc----ccCCCCCcEEecCCCccc
Q 011151 148 NI-EKLLHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQG----IGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 148 ~~-~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~ 214 (492)
.+ .++++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++++|...
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 54 899999999999999 788887 78999999999999999 6677774 889999999999998653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=137.42 Aligned_cols=156 Identities=22% Similarity=0.192 Sum_probs=101.3
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCc--cccccccchhhccCCeeeEEecchhhhhhccccccccC
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDY--SWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP 146 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 146 (492)
+.++++.+.++.+...+..+. ....|+.+.+..... +.+. ..++.|..++.|+.|+|+ ++.+..+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l----~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls-------~n~l~~l~ 240 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL----QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLS-------NLQIFNIS 240 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECT-------TSCCSCCC
T ss_pred CccceEEeeCCCCCcchhhHh----hcCccCcccccCcccccccee-cChhhhccCCCCcEEECC-------CCCCCCCC
Confidence 568899998888877555444 333444443333211 1123 367778999999999999 99999999
Q ss_pred chhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 147 TNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 147 ~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
..+.++++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++.+++|++|++++|.+ ..+|..+..+++
T Consensus 241 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~ 317 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCN 317 (727)
T ss_dssp GGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTT
T ss_pred hhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCC
Confidence 988899999999999999 77999999999999999999999 668999999999999999999977 578988999999
Q ss_pred ccccceEEeeccc
Q 011151 227 LRRVTKFVVGGGY 239 (492)
Q Consensus 227 L~~L~l~~~~~~~ 239 (492)
|+.|++..|....
T Consensus 318 L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 318 LQFLGVEGNPLEK 330 (727)
T ss_dssp CCCEECTTSCCCS
T ss_pred ccEEeCCCCccCC
Confidence 9999998887653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=111.24 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=105.0
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch--hhccCcCCEEEccCCCCcccc-chhhhc
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN--IEKLLHLKYLSLCGQREIEKL-PETLCE 175 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~--~~~l~~L~~L~L~~~~~~~~l-p~~~~~ 175 (492)
++++++++. +.. +|..+. ..|++|+++ ++.+..++.. +.++++|++|++++|. +..+ |..+..
T Consensus 11 ~~l~~s~~~---l~~-ip~~~~--~~l~~L~l~-------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRG---LKE-IPRDIP--LHTTELLLN-------DNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSC---CSS-CCSCCC--TTCSEEECC-------SCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCC---cCc-CccCCC--CCCCEEECC-------CCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 678888887 555 554332 379999999 8899888753 8899999999999999 5555 778999
Q ss_pred CCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 176 LYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|+.|++..+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999999954455556889999999999999998888888999999999998887655
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=107.23 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=94.9
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhc
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEK 151 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~ 151 (492)
.++++++.+..+|..+. ++|+.|++++|. +.. +|..|..+++|++|+++ ++.+..++. .+.+
T Consensus 14 ~l~~~~~~l~~ip~~~~------~~l~~L~L~~n~---i~~-ip~~~~~l~~L~~L~Ls-------~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP------RDVTELYLDGNQ---FTL-VPKELSNYKHLTLIDLS-------NNRISTLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCCSCCC------TTCCEEECCSSC---CCS-CCGGGGGCTTCCEEECC-------SSCCCCCCTTTTTT
T ss_pred EEEcCCCCCCcCCCCCC------CCCCEEECCCCc---Cch-hHHHhhcccCCCEEECC-------CCcCCEeCHhHccC
Confidence 56677777777776543 578888888887 555 66778888889999998 888888764 4888
Q ss_pred cCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcc
Q 011151 152 LLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 152 l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 213 (492)
+++|++|++++|. +..++. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8889999999888 666554 57888889999998888 555554 477888888888888865
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-13 Score=120.65 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=106.4
Q ss_pred eEEEEEEee--cCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 71 ILHLLLTLH--RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 71 ~~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
++...+.+. .++.++..+. .+++|+.|++++|. +.. +| .+..+++|+.|+++ ++.+..+|..
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~----~l~~L~~L~ls~n~---l~~-l~-~~~~l~~L~~L~l~-------~n~l~~l~~~ 88 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLS----TLKACKHLALSTNN---IEK-IS-SLSGMENLRILSLG-------RNLIKKIENL 88 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHH----HTTTCSEEECSEEE---ESC-CC-CHHHHTTCCEEEEE-------EEEECSCSSH
T ss_pred hheeEeccccCcHhhhhHHHh----cCCCCCEEECCCCC---Ccc-cc-ccccCCCCCEEECC-------CCCcccccch
Confidence 334444433 3444455555 88999999999887 666 56 58888999999999 8888888887
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccc--cccCCCCCcEEecCCCccccccccc------
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ--GIGKLRKLMYLDNDDTWFLRYLPVG------ 220 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~------ 220 (492)
+..+++|++|++++|. +..+| .+..+++|++|++++|. +..++. .+..+++|++|++++|.+....|..
T Consensus 89 ~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 8888899999999998 77776 58888999999999988 555443 6788999999999999775554432
Q ss_pred ----ccccccccccc
Q 011151 221 ----IGELINLRRVT 231 (492)
Q Consensus 221 ----l~~l~~L~~L~ 231 (492)
+..+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 55666666654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=107.58 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=102.0
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccc-hhhhcCC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLP-ETLCELY 177 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~ 177 (492)
++++++++. +.. +|..+ .++|++|+++ ++.+..+|..+.++++|++|++++|. +..++ ..+..++
T Consensus 13 ~~l~~~~~~---l~~-ip~~~--~~~l~~L~L~-------~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKG---LKV-LPKGI--PRDVTELYLD-------GNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSC---CSS-CCSCC--CTTCCEEECC-------SSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCC---CCc-CCCCC--CCCCCEEECC-------CCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 567787777 555 45433 3579999999 99999999889999999999999999 66665 4588999
Q ss_pred CCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 178 NLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 178 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.|++..+...
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999999944444557899999999999999886544456888999999988877654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=104.99 Aligned_cols=127 Identities=26% Similarity=0.367 Sum_probs=102.3
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~ 150 (492)
+.+.+.++.+..+|..+ .++|+.|++++|. +.+..+..|..+++|++|+++ ++.+..++.. +.
T Consensus 10 ~~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI------PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-------QNQIQSLPDGVFD 73 (177)
T ss_dssp TEEECCSSCCSSCCTTC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTTT
T ss_pred CEEEecCCCCccCCCCC------CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECC-------CCcceEeChhHcc
Confidence 46777778887777544 3789999999998 677566667889999999999 8888888755 68
Q ss_pred ccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccccccccccc-ccCCCCCcEEecCCCccccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWFLRY 216 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~ 216 (492)
++++|++|++++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+...
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 89999999999999 7777654 6789999999999998 5566654 57899999999999976543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=125.47 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=111.2
Q ss_pred cCCCCceEEE-eccCCccccccc--cchhhcc--CCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCcc
Q 011151 93 KGLRGLRSLL-VESDDYSWFSEV--LPQLFDK--LTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIE 167 (492)
Q Consensus 93 ~~~~~L~~L~-l~~~~~~~~~~~--~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 167 (492)
..+++|+.|+ +..+....+... ....+.. ...|++|+++ ++.+..+|. +.++++|++|++++|. +.
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls-------~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~ 476 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-------HKDLTVLCH-LEQLLLVTHLDLSHNR-LR 476 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECT-------TSCCSSCCC-GGGGTTCCEEECCSSC-CC
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEec-------CCCCCCCcC-ccccccCcEeecCccc-cc
Confidence 3677788887 454432111110 0000111 1248899999 888988887 8999999999999999 77
Q ss_pred ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccc-cccccccccccccceEEeecccCCCcCcc
Q 011151 168 KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYL-PVGIGELINLRRVTKFVVGGGYDRARSLG 246 (492)
Q Consensus 168 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 246 (492)
.+|..++.+++|++|++++|. +..+| .++.+++|++|++++|.+.... |..+..+++|+.|+++.|......+....
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 999999999999999999998 66688 7899999999999999886665 88899999999999998877652222222
Q ss_pred ccccccccCCc
Q 011151 247 SLKKLNLLREC 257 (492)
Q Consensus 247 ~l~~L~~L~~l 257 (492)
....+++|+.+
T Consensus 555 l~~~lp~L~~L 565 (567)
T 1dce_A 555 LAEMLPSVSSI 565 (567)
T ss_dssp HHHHCTTCSEE
T ss_pred HHHHCcccCcc
Confidence 23335555544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=113.12 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=59.6
Q ss_pred CCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC--CCCCCccc-eeeccccccceeecccccCCcCC
Q 011151 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP--LGKLPSLE-SLYIEGMQSVKRVGNEFLGVESD 391 (492)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~ 391 (492)
+++|+++++++|.+.. ++...+..|.+|+.+++.++ ...++. +.++++|+ .+++.+ .++.++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~---- 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM---- 294 (329)
T ss_dssp CTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT----
T ss_pred cCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh----
Confidence 5677777777766666 65566777777777777766 233332 66777777 777765 35666554443
Q ss_pred CCCCcccccccccceeccCc--ccccccccCccccccccCCCCcceEe
Q 011151 392 TDGSSIIAFPKLKHLKFYDM--EELEEWDFGTAIKGEIIIMPRLSFLE 437 (492)
Q Consensus 392 ~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~L~~L~ 437 (492)
.+++|+.+.+... ..+....|. .+++|+.++
T Consensus 295 -------~c~~L~~l~l~~n~i~~I~~~aF~--------~~~~L~~ly 327 (329)
T 3sb4_A 295 -------GCDNLRYVLATGDKITTLGDELFG--------NGVPSKLIY 327 (329)
T ss_dssp -------TCTTEEEEEECSSCCCEECTTTTC--------TTCCCCEEE
T ss_pred -------CCccCCEEEeCCCccCccchhhhc--------CCcchhhhc
Confidence 5677777776432 222222332 567777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=122.70 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=140.2
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCc----------cccccccchhhccCCeeeEEe-cchhhhhhc
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDY----------SWFSEVLPQLFDKLTCLRALK-LEVRQRWLC 138 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~~~~~~~~~~~~~~L~~L~-L~~~~~~~~ 138 (492)
.+++++++.+.+..+|..+. ++++|+.|++.+|.. ....+..|..++.+++|+.|+ ++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~----~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~------- 418 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELE----SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR------- 418 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHH----HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-------
T ss_pred cceeccCChhhHHhhHHHHH----HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-------
Confidence 44456666676666666665 777788877755421 113445677788899999998 55
Q ss_pred cccccccCc------hhhc--cCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCC
Q 011151 139 KNFIKKIPT------NIEK--LLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDD 210 (492)
Q Consensus 139 ~~~~~~l~~------~~~~--l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 210 (492)
.+.+..++. .+.. ...|++|++++|. ++.+|. ++.+++|+.|++++|. +..+|..++.+++|++|++++
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCS
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCC
Confidence 444433321 1111 2369999999999 888987 9999999999999999 669999999999999999999
Q ss_pred CcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCC--CCCChhhhhHhhhcccCCcceEec
Q 011151 211 TWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLG--GVSDAGEARRAELEKKKNLVELGL 287 (492)
Q Consensus 211 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l 287 (492)
|.+.. +| .+..+++|+.|+++.+...... .+..+..++.|+.+.+.+.. ..+. .....+..+++|+.|++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~---~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNSLCQEEG---IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSGGGGSSS---CTTHHHHHCTTCSEEEC
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCcCCCCcc---HHHHHHHHCcccCccCC
Confidence 98854 67 8999999999999998876511 14566677777777665432 2221 11123455788888864
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-13 Score=120.75 Aligned_cols=113 Identities=23% Similarity=0.192 Sum_probs=90.7
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP 194 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 194 (492)
+|..+..+++|++|+++ ++.+..+| .+.++++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls-------~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-------TNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-------EEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC-------CCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 44478889999999999 88888888 78889999999999998 77888878888899999999998 56666
Q ss_pred ccccCCCCCcEEecCCCccccccc-ccccccccccccceEEeecc
Q 011151 195 QGIGKLRKLMYLDNDDTWFLRYLP-VGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 195 ~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 238 (492)
.+..+++|++|++++|.+....+ ..+..+++|+.|++..+...
T Consensus 110 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 57888899999999987643222 35777888888888776543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=98.55 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=98.5
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCccccchh-hhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPET-LCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~ 175 (492)
.+.++++++. +.. +|.. ..++|+.|+++ ++.+..++.. +.++++|++|++++|. +..+|.. +..
T Consensus 9 ~~~l~~~~~~---l~~-~p~~--~~~~l~~L~l~-------~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKG---LTS-VPTG--IPSSATRLELE-------SNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSC---CSS-CCTT--CCTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCC---Ccc-CCCC--CCCCCcEEEeC-------CCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 4677777776 555 4432 23689999999 8888888754 6889999999999999 7777654 688
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++..+...
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999999999999 555554 4688999999999999886444444678899999988877654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-09 Score=101.83 Aligned_cols=308 Identities=13% Similarity=0.045 Sum_probs=173.5
Q ss_pred CccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCcccc
Q 011151 91 NVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKL 169 (492)
Q Consensus 91 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~l 169 (492)
+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+++. .+ +..++. .+.++.+|+.+.+..+ +..+
T Consensus 66 AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp-------~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIP-------DS-VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp TTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCC-------TT-CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred HhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeC-------CC-ceEccchhhcccccchhhcccCc--eeee
Confidence 4458899999998643 566566778899999999986 33 555653 4778888888776654 3333
Q ss_pred ch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccc
Q 011151 170 PE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSL 248 (492)
Q Consensus 170 p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 248 (492)
.. .+..+..++........ ..-...+.+|.+|+.+.+..+ ........+..+.+|+.+.+..+-..- ....+..+
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I-~~~~F~~~ 207 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKII-RDYCFAEC 207 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-CTTTTTTC
T ss_pred cceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEe-Cchhhccc
Confidence 32 34444433333333222 111234677888888888654 222223345667777777664321110 01122233
Q ss_pred ccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCC
Q 011151 249 KKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRG 328 (492)
Q Consensus 249 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 328 (492)
..|..+ .+... ... .......+.+|+.+.+.... + ..-...+..+..|+.+.+..+..
T Consensus 208 ~~L~~i---~~~~~--~~~----i~~~~~~~~~l~~i~ip~~~-~------------~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 208 ILLENM---EFPNS--LYY----LGDFALSKTGVKNIIIPDSF-T------------ELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp TTCCBC---CCCTT--CCE----ECTTTTTTCCCCEEEECTTC-C------------EECSSTTTTCSSCCEEEECCTTC
T ss_pred ccccee---ecCCC--ceE----eehhhcccCCCceEEECCCc-e------------ecccccccccccceeEEcCCCcc
Confidence 333222 21110 000 00112234567777665332 0 00012345567788888866543
Q ss_pred CccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceec
Q 011151 329 RRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKF 408 (492)
Q Consensus 329 ~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 408 (492)
. +....+..+..++.+......... ..+..+.+|+.+.+..+ ++.++...+. .+.+|+.+.+
T Consensus 266 ~---i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~-----------~c~~L~~i~l 327 (394)
T 4fs7_A 266 R---IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFE-----------SCTSLVSIDL 327 (394)
T ss_dssp E---ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTT-----------TCTTCCEECC
T ss_pred e---eeccccccccccceeccCceeecc--ccccccccccccccccc--cceechhhhc-----------CCCCCCEEEe
Confidence 3 325566677788877776543211 12566778888888643 5666655443 5677888777
Q ss_pred cCcccccccccCccccccccCCCCcceEeecCCCCcccCC-cccCCCCCCCeEEEeCC
Q 011151 409 YDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALP-DLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 465 (492)
.+ .++.+.- .++..|.+|+.+.+..+ ++.|+ ..+.+|++|+.+++..+
T Consensus 328 p~--~v~~I~~-----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 328 PY--LVEEIGK-----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CT--TCCEECT-----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CC--cccEEhH-----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 43 2333321 35667888999888653 66664 45778889999988754
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-10 Score=95.55 Aligned_cols=100 Identities=20% Similarity=0.349 Sum_probs=58.3
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-CchhhccCcCCEEEccCCCCccccchh-hhcC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEKLLHLKYLSLCGQREIEKLPET-LCEL 176 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l 176 (492)
+.++++++. +.. +|..+. ++|++|+|+ ++.+..+ |..+.++++|++|+|++|. +..+|.. +.++
T Consensus 15 ~~l~~~~n~---l~~-iP~~~~--~~L~~L~Ls-------~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIR---LAS-VPAGIP--TDKQRLWLN-------NNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSC---CSS-CCSCCC--TTCSEEECC-------SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCC---CCc-cCCCcC--CCCcEEEeC-------CCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 455555554 333 333222 556666666 6666655 3346666666666666666 5555554 3566
Q ss_pred CCCCeeecCccccccccccc-ccCCCCCcEEecCCCcc
Q 011151 177 YNLERLNITSCNHLRELPQG-IGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 177 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 213 (492)
++|++|++++|. +..+|.. +..+++|++|++++|.+
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 666666666666 4444443 66666777777776654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-10 Score=94.29 Aligned_cols=100 Identities=25% Similarity=0.363 Sum_probs=67.5
Q ss_pred EEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hh
Q 011151 72 LHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IE 150 (492)
Q Consensus 72 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~ 150 (492)
+.++++++.+..+|..+. ++|+.|++++|. +.+..|..|..+++|++|+|+ +|.+..+|.. +.
T Consensus 15 ~~l~~~~n~l~~iP~~~~------~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP------TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFN-------SNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCSSCCSCCC------TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-------SSCCCCCCTTTTT
T ss_pred cEEEeCCCCCCccCCCcC------CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECC-------CCCCCccChhHhC
Confidence 356666666666665442 667777777776 666556666777777777777 6777776654 46
Q ss_pred ccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCN 188 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 188 (492)
++++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 79 ~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 67777777777777 6666654 6667777777777776
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-09 Score=101.41 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=131.5
Q ss_pred CCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCccccch-h
Q 011151 95 LRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPE-T 172 (492)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~-~ 172 (492)
+..++.+.+... ++.+-..+|.++ +|+.+.+. .+ +..++.. |.+ .+|+.+.+.. . +..++. .
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~-------~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~a 175 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLN-------EG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDI 175 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTTC-CCSEEECC-------TT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSST
T ss_pred cCCccEEEECCc----cCEehHhhcccC-CccEEEeC-------CC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHH
Confidence 355555555443 444445556554 46666665 33 5555433 444 3566666665 2 444443 3
Q ss_pred hhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccc
Q 011151 173 LCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLN 252 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 252 (492)
+.+|.+|+.+++..|. +..++...-.+.+|+.+.+..+ +...-...+..+++|+.+.+..+-..- ....+.. .
T Consensus 176 F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I-~~~aF~~----~ 248 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTI-GQEAFRE----S 248 (401)
T ss_dssp TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEE-CTTTTTT----C
T ss_pred hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCc-ccccccc----C
Confidence 5666677777776665 4555544333566666666543 322223345566666666554321110 0111111 2
Q ss_pred ccCCceEec-CCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc
Q 011151 253 LLRECSIRG-LGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN 331 (492)
Q Consensus 253 ~L~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 331 (492)
.|+.+.+.. +..+.. ..+.+|++|+.+.+..+.+..... ...-...+..|++|+.+.+.. ....
T Consensus 249 ~L~~i~lp~~i~~I~~------~aF~~c~~L~~l~l~~~~~~~~~~-------~~I~~~aF~~c~~L~~l~l~~-~i~~- 313 (401)
T 4fdw_A 249 GITTVKLPNGVTNIAS------RAFYYCPELAEVTTYGSTFNDDPE-------AMIHPYCLEGCPKLARFEIPE-SIRI- 313 (401)
T ss_dssp CCSEEEEETTCCEECT------TTTTTCTTCCEEEEESSCCCCCTT-------CEECTTTTTTCTTCCEECCCT-TCCE-
T ss_pred CccEEEeCCCccEECh------hHhhCCCCCCEEEeCCccccCCcc-------cEECHHHhhCCccCCeEEeCC-ceEE-
Confidence 344443321 111221 457788888888887765321100 001123466788899888873 3444
Q ss_pred ccCchhhhccccccEEEEecccCCCcCC--CCCCCCccceeeccccc
Q 011151 332 VVPRNWVMSLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQ 376 (492)
Q Consensus 332 ~l~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~ 376 (492)
+....+..|.+|+.+.|..+ . ..++ .+.++ +|+.+++.++.
T Consensus 314 -I~~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 314 -LGQGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -ECTTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSS
T ss_pred -EhhhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCC
Confidence 65667888899999999665 2 2232 37777 89999998875
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-10 Score=93.35 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=73.5
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhcccccccc-CchhhccCcCCEEEccCCCCccccchh-hhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKI-PTNIEKLLHLKYLSLCGQREIEKLPET-LCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~ 175 (492)
.+.++++++. +.. +|..+ .+.|++|+|+ ++.+..+ |..+.++++|++|++++|. +..+|.. +..
T Consensus 11 ~~~l~~s~n~---l~~-ip~~~--~~~l~~L~L~-------~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKS---LAS-VPTGI--PTTTQVLYLY-------DNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSC---CSS-CCSCC--CTTCSEEECC-------SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEeCCCC---cCc-cCccC--CCCCcEEEcC-------CCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccC
Confidence 4677887776 555 44433 3678888888 7777777 4457788888888888888 6666654 567
Q ss_pred CCCCCeeecCcccccccccc-cccCCCCCcEEecCCCccc
Q 011151 176 LYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 214 (492)
+++|++|++++|. +..+|. .+..+++|++|++++|.+.
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888888888887 555554 4777888888888888653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=92.58 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=89.1
Q ss_pred eEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-h
Q 011151 71 ILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-I 149 (492)
Q Consensus 71 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~ 149 (492)
.+.++++++.+..+|..+. +.|+.|++++|. +.+..|..|..+++|++|+|+ +|.+..+|.. +
T Consensus 11 ~~~l~~s~n~l~~ip~~~~------~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls-------~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP------TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLD-------NNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC------TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-------SSCCCCCCTTTT
T ss_pred CCEEEeCCCCcCccCccCC------CCCcEEEcCCCc---CCccChhhhcCcccCCEEECC-------CCCcCccChhhc
Confidence 3478888899988887653 889999999998 888678889999999999999 9999998865 6
Q ss_pred hccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNH 189 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 189 (492)
.++++|++|++++|. +..+|.. +..+++|++|++++|.+
T Consensus 75 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 899999999999999 7777764 88999999999999983
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.9e-09 Score=99.82 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=131.3
Q ss_pred cCCeeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCCCccccchh-hhcCCCCCeeecCcccccccc-cccc
Q 011151 121 KLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQREIEKLPET-LCELYNLERLNITSCNHLREL-PQGI 197 (492)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~l-p~~~ 197 (492)
.+..++.+.+. +.+..++.. |.++ +|+.+.+..+ +..++.. +.+ .+|+.+.+.. . +..+ +..+
T Consensus 111 ~~~~l~~i~ip--------~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIILP--------NSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIF 176 (401)
T ss_dssp ECSSCSEEECC--------TTCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTT
T ss_pred ecCCccEEEEC--------CccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHh
Confidence 34566666664 345555543 5554 6888887665 5555543 444 3688888775 2 3433 3457
Q ss_pred cCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEec-CCCCCChhhhhHhhh
Q 011151 198 GKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRG-LGGVSDAGEARRAEL 276 (492)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~-~~~~~~~~~~~~~~l 276 (492)
.+|++|+.+++.++.+ ..++...-...+|+.+.+... ... -.-..+..+..|+.+.+.. +..+.. ..+
T Consensus 177 ~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~~-l~~---I~~~aF~~~~~L~~l~l~~~l~~I~~------~aF 245 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPVT-LKE---IGSQAFLKTSQLKTIEIPENVSTIGQ------EAF 245 (401)
T ss_dssp TTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCTT-CCE---ECTTTTTTCTTCCCEECCTTCCEECT------TTT
T ss_pred hCcccCCeeecCCCcc-eEechhhEeecccCEEEeCCc-hhe---ehhhHhhCCCCCCEEecCCCccCccc------ccc
Confidence 7788888888877755 333433223566776665422 111 1112233444455444432 111111 223
Q ss_pred cccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcc---ccCchhhhccccccEEEEeccc
Q 011151 277 EKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRN---VVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 277 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
.+ .+|+.+.+..+ ++. .-...+..+++|+.+.+.++..... .++...+..|++|+.+.+..+
T Consensus 246 ~~-~~L~~i~lp~~-i~~------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 246 RE-SGITTVKLPNG-VTN------------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES- 310 (401)
T ss_dssp TT-CCCSEEEEETT-CCE------------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-
T ss_pred cc-CCccEEEeCCC-ccE------------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-
Confidence 34 46777777432 211 1123456677888888877655400 143566777888888888743
Q ss_pred CCCcCCC--CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCc
Q 011151 354 NCEHLPP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDM 411 (492)
Q Consensus 354 ~~~~~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 411 (492)
...++. +.++++|+.+.|..+ ++.++...+. .+ +|+.+.+.+.
T Consensus 311 -i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~-----------~~-~L~~l~l~~n 355 (401)
T 4fdw_A 311 -IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN-----------NT-GIKEVKVEGT 355 (401)
T ss_dssp -CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS-----------SS-CCCEEEECCS
T ss_pred -eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC-----------CC-CCCEEEEcCC
Confidence 233322 667788888888543 5666554443 55 7888877664
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-09 Score=99.80 Aligned_cols=318 Identities=12% Similarity=0.047 Sum_probs=190.4
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-c
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-T 147 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~ 147 (492)
.+++.+.+.. .+..+.. .+|.+|++|+.+.+..+ +..+-..+|..+..|+.+.+. . .+..+. .
T Consensus 71 ~~L~~i~lp~-~i~~I~~---~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p-------~-~l~~i~~~ 134 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGE---FAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLP-------L-MLKSIGVE 134 (394)
T ss_dssp TTEEEEECCT-TCCEECT---TTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCC-------T-TCCEECTT
T ss_pred CCceEEEeCC-CccCcch---hHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhccc-------C-ceeeecce
Confidence 5788887753 3443332 24459999999999754 555556778999999988775 3 244443 3
Q ss_pred hhhccCcCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccc
Q 011151 148 NIEKLLHLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELIN 226 (492)
Q Consensus 148 ~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 226 (492)
.|.++..+......... .+ ...+.++.+|+.+.+.++. ...-...+.++.+|+.+.+..+ +.......+..+..
T Consensus 135 aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeecccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 35555444433333222 22 2347788889999887653 2222345778888888888765 32222334566777
Q ss_pred ccccceEEeecccCCCcCccccccccccCCceEecC-CCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhH
Q 011151 227 LRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGL-GGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRES 305 (492)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 305 (492)
|+.+.+....... ...... ...|+.+.+... ..+.. ..+..+..++.+.+..+...
T Consensus 210 L~~i~~~~~~~~i--~~~~~~---~~~l~~i~ip~~~~~i~~------~~f~~~~~l~~~~~~~~~~~------------ 266 (394)
T 4fs7_A 210 LENMEFPNSLYYL--GDFALS---KTGVKNIIIPDSFTELGK------SVFYGCTDLESISIQNNKLR------------ 266 (394)
T ss_dssp CCBCCCCTTCCEE--CTTTTT---TCCCCEEEECTTCCEECS------STTTTCSSCCEEEECCTTCE------------
T ss_pred cceeecCCCceEe--ehhhcc---cCCCceEEECCCceeccc------ccccccccceeEEcCCCcce------------
Confidence 7776554332211 111111 123333333211 11111 34667888888888765411
Q ss_pred HHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC--CCCCCCccceeeccccccceeecc
Q 011151 306 ERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQSVKRVGN 383 (492)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~~l~~~~~ 383 (492)
.....+..+..++.+...... ++...+..+.+|+.+.+..+ ...++ .+.++.+|+.++|.+. ++.++.
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~ 336 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK 336 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT
T ss_pred -eeccccccccccceeccCcee-----eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH
Confidence 112235567788888776543 32455678899999999765 22332 3778899999999643 677766
Q ss_pred cccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeE
Q 011151 384 EFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKL 460 (492)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L 460 (492)
..+. .+.+|+++.+... ++.+.- .++..|++|+.+.+..+ ++.+...+.++++|+.+
T Consensus 337 ~aF~-----------~c~~L~~i~lp~~--l~~I~~-----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFR-----------GCTSLSNINFPLS--LRKIGA-----NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTT-----------TCTTCCEECCCTT--CCEECT-----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred Hhcc-----------CCCCCCEEEECcc--ccEehH-----HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 5544 6778888887542 443321 35678999999999763 45555567777777654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-09 Score=99.70 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=58.2
Q ss_pred CCceEEEeccCCcccccccc----chhhc-cCCeeeEEecchhhhhhcccccccc--CchhhccCcCCEEEccCCCCccc
Q 011151 96 RGLRSLLVESDDYSWFSEVL----PQLFD-KLTCLRALKLEVRQRWLCKNFIKKI--PTNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~----~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l--~~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
+.|+.|++++|. +.... ...+. ..++|+.|+|+ ++.+... ......+.+|++|+|++|. ++.
T Consensus 72 ~~L~~L~Ls~n~---l~~~~~~~l~~~L~~~~~~L~~L~Ls-------~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~ 140 (372)
T 3un9_A 72 SSLRQLNLAGVR---MTPVKCTVVAAVLGSGRHALDEVNLA-------SCQLDPAGLRTLLPVFLRARKLGLQLNS-LGP 140 (372)
T ss_dssp TTCCEEECTTSC---CCHHHHHHHHHHHSSCSSCEEEEECT-------TCCCCHHHHHHTHHHHHTEEEEECCSSC-CCH
T ss_pred hhCCEEEecCCC---CCHHHHHHHHHHHhhCCCCceEEEec-------CCCCCHHHHHHHHHHHHhccHhhcCCCC-CCH
Confidence 567777777776 33221 22222 22567777777 5555431 1223345567777777776 432
Q ss_pred c-chhh-----hcCCCCCeeecCcccccc----cccccccCCCCCcEEecCCCcc
Q 011151 169 L-PETL-----CELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 169 l-p~~~-----~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
. ...+ ....+|++|++++|.+.. .++..+..+++|++|++++|.+
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 2 1122 235667777777776322 2344445667777777777754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=93.55 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=36.8
Q ss_pred hccCCeeeEEecchhhhhhcc-ccccccC-chhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccccccc
Q 011151 119 FDKLTCLRALKLEVRQRWLCK-NFIKKIP-TNIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLRELPQ 195 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~-~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~ 195 (492)
+..+++|+.|+|+ + |.+..++ ..+.++++|++|+|++|. +..++ ..+.++++|++|+|++|. +..+|.
T Consensus 27 l~~~~~L~~L~l~-------~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 97 (347)
T 2ifg_A 27 LPGAENLTELYIE-------NQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSW 97 (347)
T ss_dssp SCSCSCCSEEECC-------SCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred CCCCCCeeEEEcc-------CCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCH
Confidence 4444444445544 3 4444444 234444455555555444 33222 234444555555555444 333333
Q ss_pred cccCCCCCcEEecCCCc
Q 011151 196 GIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 196 ~~~~l~~L~~L~l~~~~ 212 (492)
.+.....|+.|++.+|.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 22222225555555443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-07 Score=87.68 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred cCCC-CceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccc---cccccCc-hhhccCcCCEEEccCCCCcc
Q 011151 93 KGLR-GLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKN---FIKKIPT-NIEKLLHLKYLSLCGQREIE 167 (492)
Q Consensus 93 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~l~~-~~~~l~~L~~L~L~~~~~~~ 167 (492)
.+++ .|+++.+-.. ++.+-..+|.+|.+|+.+.+. .+ .+..+.. .|.++.+|+.+.+..+ +.
T Consensus 60 ~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~-------~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~ 126 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQ-------DNKPSCVKKIGRQAFMFCSELTDIPILDS--VT 126 (394)
T ss_dssp TTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEG-------GGCCCCCCEECTTTTTTCTTCCBCGGGTT--CS
T ss_pred cCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeec-------CCCCCeeeEechhhchhcccceeeccCCc--cc
Confidence 3664 5888888653 566566778888888888886 43 2555543 3677778887777654 44
Q ss_pred ccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCC
Q 011151 168 KLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 168 ~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 211 (492)
.++. .+..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT
T ss_pred eehhhhhhhhccccccccccee-eeecccceecccccccccccce
Confidence 4443 36677888888886543 2222334667778888777654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-06 Score=83.73 Aligned_cols=107 Identities=9% Similarity=0.131 Sum_probs=53.1
Q ss_pred ccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc
Q 011151 92 VKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP 170 (492)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp 170 (492)
|.+|.+|+.+.+..+.-..+..+-..+|..+..|+.+.+. . .+..++. .+.++.+|+.+.+... +..++
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-------~-~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~ 152 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-------D-SVTEIDSEAFHHCEELDTVTIPEG--VTSVA 152 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-------T-TCSEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC-------C-ccceehhhhhhhhcccccccccce--eeeec
Confidence 3466666666666543223444344556666666665554 2 2344432 3556666666666543 23332
Q ss_pred h-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCC
Q 011151 171 E-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDD 210 (492)
Q Consensus 171 ~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 210 (492)
. .+..+.+|+.+.+..+ +..+....-...+|+.+.+..
T Consensus 153 ~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred ccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 2 3555666666666543 222222222234555555543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.7e-08 Score=92.11 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=84.7
Q ss_pred EEEEEee-cCCCcccccccCccCCCCceEEEecc-CCccccccccchhhccCCeeeEEecchhhhhhccccccccCc-hh
Q 011151 73 HLLLTLH-RGASVPISIWGNVKGLRGLRSLLVES-DDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NI 149 (492)
Q Consensus 73 ~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~ 149 (492)
.++..++ .+..+|. +. .+++|+.|++++ |. +....+..|..+++|+.|+|+ +|.+..++. .|
T Consensus 12 ~v~~~~~n~l~~ip~-l~----~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LP----GAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIV-------KSGLRFVAPDAF 76 (347)
T ss_dssp CEECCSSCCCTTTTT-SC----SCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECC-------SSCCCEECTTGG
T ss_pred EEEcCCCCCCCccCC-CC----CCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECC-------CCccceeCHHHh
Confidence 3566666 7777777 65 889999999996 87 888677889999999999999 889988765 58
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNH 189 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 189 (492)
.++++|++|+|++|. +..+|..+.....|+.|++.+|.+
T Consensus 77 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp GSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 999999999999999 888887655554599999999984
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-08 Score=84.84 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred ccccccceeccCcccccccccCccccccccC----CCCcceEeecCCCCccc--CCcccCCCCCCCeEEEeCCCchhh
Q 011151 399 AFPKLKHLKFYDMEELEEWDFGTAIKGEIII----MPRLSFLEISGCCKLKA--LPDLLLQKTTLQKLLIGRCPILEE 470 (492)
Q Consensus 399 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~ 470 (492)
.+++|++|++++|..+++..+. .+.. +++|++|+|++|+.+++ + ..+..+++|+.|++++|+.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 5556666666666655554431 1222 24677777777766664 2 2344567777777777776554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-08 Score=97.08 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=112.4
Q ss_pred cceEEEEEEeecCCCcc-cccccCcc-CCCCceEEEeccCCccccccc-cchhhccCCeeeEEecchhhhhhcccccccc
Q 011151 69 KKILHLLLTLHRGASVP-ISIWGNVK-GLRGLRSLLVESDDYSWFSEV-LPQLFDKLTCLRALKLEVRQRWLCKNFIKKI 145 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l 145 (492)
..++.++++++.+.... ..+...+. ..+.|+.|++++|. +... .......+++|+.|+|+ +|.++..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~---l~~~~~~~l~~~L~~L~~L~Ls-------~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ---LDPAGLRTLLPVFLRARKLGLQ-------LNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC---CCHHHHHHTHHHHHTEEEEECC-------SSCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC---CCHHHHHHHHHHHHhccHhhcC-------CCCCCHH
Confidence 57889999999887522 22222222 34799999999998 4332 23323456789999999 7877653
Q ss_pred C-----chh-hccCcCCEEEccCCCCccc-----cchhhhcCCCCCeeecCcccccc----cccccccCCCCCcEEecCC
Q 011151 146 P-----TNI-EKLLHLKYLSLCGQREIEK-----LPETLCELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLDNDD 210 (492)
Q Consensus 146 ~-----~~~-~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~ 210 (492)
. ..+ ...++|++|+|++|. ++. ++..+..+++|++|++++|.+.. .++..+..+++|++|++++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 2 222 246789999999998 543 45556788999999999998433 3455677788999999999
Q ss_pred Cccccc----ccccccccccccccceEEeeccc
Q 011151 211 TWFLRY----LPVGIGELINLRRVTKFVVGGGY 239 (492)
Q Consensus 211 ~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~ 239 (492)
|.+... +...+...++|+.|+++.|....
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 987543 33445567889999998887653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-08 Score=83.41 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred ccccEEEEecccCCCc-CCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccC
Q 011151 342 TNLRALLLKNCRNCEH-LPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFG 420 (492)
Q Consensus 342 ~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 420 (492)
.+|+.|++++|.+... +..+..+++|++|+|++|..+++.+....+.. ....++|++|++++|+++++-.+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-------~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-------ENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-------HHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-------ccccCCCCEEEcCCCCcCCHHHHH
Confidence 4578888888764432 33366788888888888887766443332210 001357899999999888876652
Q ss_pred ccccccccCCCCcceEeecCCCCccc
Q 011151 421 TAIKGEIIIMPRLSFLEISGCCKLKA 446 (492)
Q Consensus 421 ~~~~~~~~~~~~L~~L~l~~c~~l~~ 446 (492)
.+..+++|++|+|++|+.+++
T Consensus 134 -----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 -----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -----HGGGCTTCCEEEEESCTTCCC
T ss_pred -----HHhcCCCCCEEECCCCCCCCc
Confidence 345789999999999998886
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-07 Score=88.29 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=73.3
Q ss_pred cchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccc--ccccccccceEEeecccCCCcCcc
Q 011151 169 LPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG--ELINLRRVTKFVVGGGYDRARSLG 246 (492)
Q Consensus 169 lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~ 246 (492)
+...+..+++|+.|.+++|... .++. + .+++|++|++..|.+.......+. .+++|+.|.++...........+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444566777777777766322 3333 3 267777777776654332222232 567777776643211100000011
Q ss_pred ccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeec
Q 011151 247 SLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEY 326 (492)
Q Consensus 247 ~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 326 (492)
.+.. + .....+++|+.|++..|.+.+ ...........+++|++|+|+.|
T Consensus 241 ~l~~---~-------------------l~~~~~p~Lr~L~L~~~~i~~---------~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 241 VFRP---L-------------------FSKDRFPNLKWLGIVDAEEQN---------VVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp GTGG---G-------------------SCTTTCTTCCEEEEESCTTHH---------HHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHH---H-------------------HhcCCCCCcCEEeCCCCCCch---------HHHHHHHhCccCCCCCEEECCCC
Confidence 1100 0 001245677777777666321 00111112234567777777766
Q ss_pred CCCccc---cCchhhhccccccEEEEecccCC
Q 011151 327 RGRRNV---VPRNWVMSLTNLRALLLKNCRNC 355 (492)
Q Consensus 327 ~~~~~~---l~~~~~~~l~~L~~L~L~~~~~~ 355 (492)
.+.... + +..+..+++|+.|++++|.+.
T Consensus 290 ~L~d~G~~~L-~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 VLTDEGARLL-LDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CCBHHHHHHH-HTTHHHHTTCSEEECCSBBCC
T ss_pred CCChHHHHHH-HhhcccCCcceEEECCCCcCC
Confidence 554421 1 122345667777777766443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=76.35 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=53.7
Q ss_pred cCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCC--CCCCCCccceeeccccccceeecccccCCc
Q 011151 312 LGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLP--PLGKLPSLESLYIEGMQSVKRVGNEFLGVE 389 (492)
Q Consensus 312 l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 389 (492)
+..+..|+.+.+..+ ... +....+..+.+|+.+.+..+ ...++ .+..+++|+.+.+.++. ++.++...+.
T Consensus 236 f~~~~~L~~i~lp~~-v~~--I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~-- 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTS--IGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFM-- 307 (379)
T ss_dssp TTTCSSCCEEEECTT-CCE--ECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTT--
T ss_pred ccCCccceEEEcCCC-ccE--eCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhhc--
Confidence 345566666666543 222 32445556666777766543 11222 25566677777765433 4555544333
Q ss_pred CCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecC
Q 011151 390 SDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISG 440 (492)
Q Consensus 390 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (492)
.+.+|+++.+-. +++.+.- .++..|++|+.+.+..
T Consensus 308 ---------~c~~L~~i~lp~--~l~~I~~-----~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 308 ---------DCVKLSSVTLPT--ALKTIQV-----YAFKNCKALSTISYPK 342 (379)
T ss_dssp ---------TCTTCCEEECCT--TCCEECT-----TTTTTCTTCCCCCCCT
T ss_pred ---------CCCCCCEEEcCc--cccEEHH-----HHhhCCCCCCEEEECC
Confidence 455666666532 1322221 2344566666666643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-07 Score=90.41 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred ccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhc-cccccEEEEeccc
Q 011151 278 KKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMS-LTNLRALLLKNCR 353 (492)
Q Consensus 278 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~-l~~L~~L~L~~~~ 353 (492)
.+++|++|+++.|.+++. ....+...+..+++|+.|++++|.+.... ...+.. + ...++++.+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~--------G~~~L~~~L~~l~~L~~L~L~~n~i~d~~--~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDE--------GARLLLDHVDKIKHLKFINMKYNYLSDEM--KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHH--------HHHHHHTTHHHHTTCSEEECCSBBCCHHH--HHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChH--------HHHHHHhhcccCCcceEEECCCCcCCHHH--HHHHHHHc--CCEEEecCCc
Confidence 467788888877775421 12234444455678888888888766532 222332 2 2456666654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-06 Score=74.24 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=75.7
Q ss_pred cccCccCCCCceEEEeccC-Ccccc-ccccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEc
Q 011151 88 IWGNVKGLRGLRSLLVESD-DYSWF-SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSL 160 (492)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L 160 (492)
+...+...+.|++|++++| ....- ...+...+...+.|++|+|+ ++.++. +...+...++|++|+|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-------~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-------CCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 3334457788888888887 52110 01134445667788888888 666654 3344556677888888
Q ss_pred cCCCCccc-----cchhhhcCCCCCeeec--Cccccccc----ccccccCCCCCcEEecCCCcc
Q 011151 161 CGQREIEK-----LPETLCELYNLERLNI--TSCNHLRE----LPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 161 ~~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~ 213 (492)
++|. ++. +...+...+.|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 8888 542 4455667778888888 66763322 334455667888888888755
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.11 E-value=7.6e-07 Score=80.27 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=53.5
Q ss_pred hccCcCCEEEccCCCCccc---cchhhhcCCCCCeeecCcccccccccccccCCC--CCcEEecCCCcccccccc-----
Q 011151 150 EKLLHLKYLSLCGQREIEK---LPETLCELYNLERLNITSCNHLRELPQGIGKLR--KLMYLDNDDTWFLRYLPV----- 219 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~~----- 219 (492)
.++++|+.|+|++|. +.. +|..+..+++|+.|+|++|. +..+ ..+..+. +|++|++++|.+....|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457788888888888 443 44556678888888888887 4433 2233333 788888888877655442
Q ss_pred --cccccccccccce
Q 011151 220 --GIGELINLRRVTK 232 (492)
Q Consensus 220 --~l~~l~~L~~L~l 232 (492)
.+..+++|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 2566777777753
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-06 Score=73.95 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=86.9
Q ss_pred cccccchhhccCCeeeEEecchhhhhhccc-cccc-----cCchhhccCcCCEEEccCCCCccc-----cchhhhcCCCC
Q 011151 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCKN-FIKK-----IPTNIEKLLHLKYLSLCGQREIEK-----LPETLCELYNL 179 (492)
Q Consensus 111 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L 179 (492)
+...+...+...+.|+.|+|+ ++ .++. +...+...++|++|+|++|. ++. +...+...+.|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~-------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCCEEEec-------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCc
Confidence 334456667888999999999 76 6644 44556677899999999999 552 44556677899
Q ss_pred CeeecCcccccc----cccccccCCCCCcEEec--CCCccccc----ccccccccccccccceEEeecc
Q 011151 180 ERLNITSCNHLR----ELPQGIGKLRKLMYLDN--DDTWFLRY----LPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 180 ~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
++|++++|.+.. .+...+...++|++|++ ++|.+... +...+...+.|++|++..+...
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 999999998433 24566778889999999 77876543 2233455677888887766543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00035 Score=67.02 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=70.2
Q ss_pred hhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccC
Q 011151 275 ELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRN 354 (492)
Q Consensus 275 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~ 354 (492)
.+.++..|+.+.+..+- +. .-...+..+..|+.+.+... ... ++...+..|.+|+.+.+.++..
T Consensus 235 ~f~~~~~L~~i~lp~~v-~~------------I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i 298 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNV-TS------------IGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAI 298 (379)
T ss_dssp TTTTCSSCCEEEECTTC-CE------------ECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTC
T ss_pred cccCCccceEEEcCCCc-cE------------eCccccceeehhcccccccc-cee--cccccccccccccccccccccc
Confidence 45677888888886542 10 01124556788999998654 333 4356678999999999987644
Q ss_pred CCcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceecc
Q 011151 355 CEHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFY 409 (492)
Q Consensus 355 ~~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 409 (492)
...-.. +.++.+|+.+.|..+ ++.++...+. .+.+|+++.+-
T Consensus 299 ~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-----------~C~~L~~i~ip 341 (379)
T 4h09_A 299 ETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFK-----------NCKALSTISYP 341 (379)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------TCTTCCCCCCC
T ss_pred ceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhh-----------CCCCCCEEEEC
Confidence 433222 788999999999643 6667655443 56677777663
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=70.86 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCCceE--EEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC---chhhccCcCCEEEccCCCCccc
Q 011151 94 GLRGLRS--LLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP---TNIEKLLHLKYLSLCGQREIEK 168 (492)
Q Consensus 94 ~~~~L~~--L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~ 168 (492)
..+.|+. +++..|....+...++-....+++|+.|+|+ +|.+..++ ..+..+++|++|+|++|. +..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-------~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~ 210 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKS 210 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECT-------TSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCS
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECC-------CCCCCCCccchhHHhhCCCCCEEECCCCc-cCC
Confidence 4556665 6667775444444344434678999999999 88887654 567789999999999999 776
Q ss_pred cchhhhcCC--CCCeeecCcccccccccc-------cccCCCCCcEEec
Q 011151 169 LPETLCELY--NLERLNITSCNHLRELPQ-------GIGKLRKLMYLDN 208 (492)
Q Consensus 169 lp~~~~~l~--~L~~L~l~~~~~~~~lp~-------~~~~l~~L~~L~l 208 (492)
+ ..+..+. +|++|++++|.+...+|. .+..+++|+.||-
T Consensus 211 ~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 211 E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred c-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 6 3355555 999999999996655552 3578999999874
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00074 Score=68.21 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhccceE
Q 011151 1 MEDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNECL 51 (492)
Q Consensus 1 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~~~~~ 51 (492)
+||+++ ||++|+++|||+....+ .+.+|+|||++|++|+.++..+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 467777 99999999999988653 446799999999999999987653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.018 Score=48.79 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCCCceEEEeccC-Ccccccc--ccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCC
Q 011151 94 GLRGLRSLLVESD-DYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQRE 165 (492)
Q Consensus 94 ~~~~L~~L~l~~~-~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~ 165 (492)
+-+.|+.|+++++ .+. ..+ .+-+++..-..|+.|+|+ ++.+++ +...+..-+.|++|+|++|.
T Consensus 39 ~n~~L~~L~L~~nn~ig-d~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVS-KERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp TCSSCCEEECTTCCSSC-HHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred cCCCccEEECCCCCCCC-HHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 4566677777654 311 111 133444555666777776 555543 22334444566677776666
Q ss_pred cc-----ccchhhhcCCCCCeeecCcccc--cc-----cccccccCCCCCcEEecCCC
Q 011151 166 IE-----KLPETLCELYNLERLNITSCNH--LR-----ELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 166 ~~-----~lp~~~~~l~~L~~L~l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~ 211 (492)
++ .+...+..-..|++|+++++.. +. .+...+..-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 43 1222334445566666654321 11 12233344455666666544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.033 Score=47.25 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=52.2
Q ss_pred cchhhccCCeeeEEecchhhhhhccc-cccc-----cCchhhccCcCCEEEccCCCCcc-----ccchhhhcCCCCCeee
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKN-FIKK-----IPTNIEKLLHLKYLSLCGQREIE-----KLPETLCELYNLERLN 183 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~-----l~~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~ 183 (492)
+...+..-+.|+.|+|+ ++ .++. +-..+..-..|+.|+|++|. ++ .+...+..-+.|+.|+
T Consensus 33 l~~ll~~n~~L~~L~L~-------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 33 INRLREDDTDLKEVNIN-------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp HHHHHTTCSSCCEEECT-------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHhcCCCccEEECC-------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEe
Confidence 44444556678888887 53 5443 33444555677888888877 44 2333455566777777
Q ss_pred cCcccccc----cccccccCCCCCcEEecCCC
Q 011151 184 ITSCNHLR----ELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 184 l~~~~~~~----~lp~~~~~l~~L~~L~l~~~ 211 (492)
|++|.+.. .+...+..-+.|++|+++++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 77777332 23333445556777777654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.048 Score=42.93 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=15.8
Q ss_pred cCCEEEccCCCCccccchh-hhcCCCCCeeecCccc
Q 011151 154 HLKYLSLCGQREIEKLPET-LCELYNLERLNITSCN 188 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 188 (492)
+|++|+|++|. +..+|.. +..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555555555 4444432 3344444444444444
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.14 Score=40.29 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=25.9
Q ss_pred eeeEEecchhhhhhccccccccCch-hhccCcCCEEEccCCC
Q 011151 124 CLRALKLEVRQRWLCKNFIKKIPTN-IEKLLHLKYLSLCGQR 164 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~L~~~~ 164 (492)
+|+.|+|+ +|.+..+|.. |..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls-------~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLT-------GNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECT-------TSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECC-------CCcCCccChhhhhhccccCEEEecCCC
Confidence 47778888 7778777754 6677788888888877
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.19 Score=56.02 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhCCCCccccCCCCCCeeeEEeChhHHHHHHHhhccc
Q 011151 2 EDIGEEYFNILASRSFFQDFDKDDDGEISTCKMHDIVHDFAQYLCSNE 49 (492)
Q Consensus 2 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~i~~~~ 49 (492)
++.++++|++|+++||++... +++..+|+|||++|++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999999765 344567999999999999987765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 492 | ||||
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 3e-04 |
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 134 QRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLREL 193
+ +I + + L+ L++ + + +LP LERL S NHL E+
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPP---RLERLIA-SFNHLAEV 319
Query: 194 PQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228
P+ L++L N LR P + +LR
Sbjct: 320 PELPQNLKQLHVEYNP----LREFPDIPESVEDLR 350
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Query: 126 RALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQR-EIEKLPETLCELYNLERLNI 184
R L V ++F+ + ++++ L E+ L L + L+ L++
Sbjct: 19 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78
Query: 185 TSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLP 218
+ + K L+ L+
Sbjct: 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 138 CKNFIKKIP-TNIEKLLHLKYLSLCGQR-EIEKLPETLCELYNLERLNITSCNHLRELPQ 195
K+ I+ + + L G IEK+ TL L + L + S N++ ++
Sbjct: 7 IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLAL-STNNIEKIS- 64
Query: 196 GIGKLRKLMYLDNDDTWF 213
+ + L L
Sbjct: 65 SLSGMENLRILSLGRNLI 82
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.85 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.82 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.81 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.8 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.71 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.66 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.65 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.64 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.62 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.61 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.48 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.43 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.42 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.4 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.38 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.37 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.33 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.3 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.25 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.19 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.13 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.05 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.02 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.92 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.83 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.78 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.11 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.84 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.38 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.2 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.64 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.49 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=5.7e-21 Score=183.89 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=26.9
Q ss_pred ccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCC
Q 011151 399 AFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRC 465 (492)
Q Consensus 399 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 465 (492)
.+|+|++|++++|. ++++. .+..+++|++|++++| .+++++. +.++++|+.|+|++|
T Consensus 327 ~l~~L~~L~L~~n~-l~~l~-------~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 327 SLTKLQRLFFANNK-VSDVS-------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp GCTTCCEEECCSSC-CCCCG-------GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred cCCCCCEEECCCCC-CCCCh-------hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence 45555555555542 33321 2334555555555543 3444432 444555555555543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.85 E-value=9.9e-22 Score=183.68 Aligned_cols=234 Identities=20% Similarity=0.193 Sum_probs=121.3
Q ss_pred chhhccCCeeeEEecchhhhhhccccc-cccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc
Q 011151 116 PQLFDKLTCLRALKLEVRQRWLCKNFI-KKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP 194 (492)
Q Consensus 116 ~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp 194 (492)
|..++++++|++|+|++ .+.+ +.+|..+.++++|++|++++|.+.+..+..+..+.+|+.+++++|.....+|
T Consensus 69 p~~l~~L~~L~~L~Ls~------~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p 142 (313)
T d1ogqa_ 69 PSSLANLPYLNFLYIGG------INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp CGGGGGCTTCSEEEEEE------ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred ChHHhcCcccccccccc------ccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCc
Confidence 34444444555555441 1222 2344444445555555555544222233334444445555555444444444
Q ss_pred ccccCCCCCcEEecCCCcccccccccccccccc-cccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhH
Q 011151 195 QGIGKLRKLMYLDNDDTWFLRYLPVGIGELINL-RRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARR 273 (492)
Q Consensus 195 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~ 273 (492)
..++++++|+++++++|.+.+.+|..+..+..+ +.+.+..+..... ....+..+..+ .+....... .....
T Consensus 143 ~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~---~~~~~~~l~~~-~l~l~~~~~----~~~~~ 214 (313)
T d1ogqa_ 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK---IPPTFANLNLA-FVDLSRNML----EGDAS 214 (313)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE---CCGGGGGCCCS-EEECCSSEE----EECCG
T ss_pred hhhccCcccceeecccccccccccccccccccccccccccccccccc---ccccccccccc-ccccccccc----ccccc
Confidence 444445555555555444444444444444333 2233322222210 11111111111 011110000 00011
Q ss_pred hhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEeccc
Q 011151 274 AELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCR 353 (492)
Q Consensus 274 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~ 353 (492)
..+..+++++.+++..+.+.. .+..+..+++|+.|++++|.+... + |.+++.+++|++|+|++|.
T Consensus 215 ~~~~~~~~l~~l~~~~~~l~~-------------~~~~~~~~~~L~~L~Ls~N~l~g~-i-P~~l~~L~~L~~L~Ls~N~ 279 (313)
T d1ogqa_ 215 VLFGSDKNTQKIHLAKNSLAF-------------DLGKVGLSKNLNGLDLRNNRIYGT-L-PQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECC-------------BGGGCCCCTTCCEEECCSSCCEEC-C-CGGGGGCTTCCEEECCSSE
T ss_pred ccccccccccccccccccccc-------------cccccccccccccccCccCeeccc-C-ChHHhCCCCCCEEECcCCc
Confidence 334566778888888777421 233566778888888888887732 6 7788888899999999888
Q ss_pred CCCcCCCCCCCCccceeeccccccc
Q 011151 354 NCEHLPPLGKLPSLESLYIEGMQSV 378 (492)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~l~~~~~l 378 (492)
+.+.+|.++.+++|+.+++++|+.+
T Consensus 280 l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 280 LCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ccccCCCcccCCCCCHHHhCCCccc
Confidence 8877888778888888888888643
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=1.6e-19 Score=173.61 Aligned_cols=299 Identities=19% Similarity=0.230 Sum_probs=213.8
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.+++.|.+.++++..+. .+. .+++|++|++++|. ++. ++. ++.+++|++|+++ ++.+..+++
T Consensus 44 ~~l~~L~l~~~~I~~l~-gl~----~L~nL~~L~Ls~N~---l~~-l~~-l~~L~~L~~L~L~-------~n~i~~i~~- 105 (384)
T d2omza2 44 DQVTTLQADRLGIKSID-GVE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADITP- 105 (384)
T ss_dssp TTCCEEECCSSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCGG-
T ss_pred CCCCEEECCCCCCCCcc-ccc----cCCCCCEEeCcCCc---CCC-Ccc-ccCCccccccccc-------ccccccccc-
Confidence 47889999999988753 344 78999999999998 666 444 8899999999999 888888764
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccc---------------------------------------
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNH--------------------------------------- 189 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~--------------------------------------- 189 (492)
+.++++|+.|+++++. +..++.. .....+..+....+..
T Consensus 106 l~~l~~L~~L~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (384)
T d2omza2 106 LANLTNLTGLTLFNNQ-ITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183 (384)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred cccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence 7889999999999887 5544322 2222222222221110
Q ss_pred --cccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCC
Q 011151 190 --LRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSD 267 (492)
Q Consensus 190 --~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~ 267 (492)
....+.....+++++.++++++.+....| ....++|+.|++..+.... +..+..++.|+.+.+....-...
T Consensus 184 ~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~ 256 (384)
T d2omza2 184 SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNL 256 (384)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCC
T ss_pred ccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-----cchhhcccccchhccccCccCCC
Confidence 01122335667889999999987655433 4567888888888776543 34456666677666655432211
Q ss_pred hhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEE
Q 011151 268 AGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRAL 347 (492)
Q Consensus 268 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L 347 (492)
..+..+++|+.++++++.+++. ..+..++.++.+.+..+.+.. + ..+..+++++.|
T Consensus 257 ------~~~~~~~~L~~L~l~~~~l~~~--------------~~~~~~~~l~~l~~~~n~l~~--~--~~~~~~~~l~~L 312 (384)
T d2omza2 257 ------APLSGLTKLTELKLGANQISNI--------------SPLAGLTALTNLELNENQLED--I--SPISNLKNLTYL 312 (384)
T ss_dssp ------GGGTTCTTCSEEECCSSCCCCC--------------GGGTTCTTCSEEECCSSCCSC--C--GGGGGCTTCSEE
T ss_pred ------CcccccccCCEeeccCcccCCC--------------Ccccccccccccccccccccc--c--cccchhcccCeE
Confidence 3477889999999999886432 236678889999999998877 3 457899999999
Q ss_pred EEecccCCCcCCCCCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccc
Q 011151 348 LLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEI 427 (492)
Q Consensus 348 ~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 427 (492)
++++|.+.+ ++.+..+++|++|++++|. ++.++. +..+|+|++|+++++. ++++. .+
T Consensus 313 ~ls~n~l~~-l~~l~~l~~L~~L~L~~n~-l~~l~~-------------l~~l~~L~~L~l~~N~-l~~l~-------~l 369 (384)
T d2omza2 313 TLYFNNISD-ISPVSSLTKLQRLFFANNK-VSDVSS-------------LANLTNINWLSAGHNQ-ISDLT-------PL 369 (384)
T ss_dssp ECCSSCCSC-CGGGGGCTTCCEEECCSSC-CCCCGG-------------GGGCTTCCEEECCSSC-CCBCG-------GG
T ss_pred ECCCCCCCC-CcccccCCCCCEEECCCCC-CCCChh-------------HcCCCCCCEEECCCCc-CCCCh-------hh
Confidence 999997654 4557889999999999996 655441 2278999999999874 55432 25
Q ss_pred cCCCCcceEeecCC
Q 011151 428 IIMPRLSFLEISGC 441 (492)
Q Consensus 428 ~~~~~L~~L~l~~c 441 (492)
..+++|+.|+|++|
T Consensus 370 ~~l~~L~~L~L~~N 383 (384)
T d2omza2 370 ANLTRITQLGLNDQ 383 (384)
T ss_dssp TTCTTCSEEECCCE
T ss_pred ccCCCCCEeeCCCC
Confidence 68999999999885
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=3.1e-19 Score=165.89 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=38.3
Q ss_pred hcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeeccccccceeec
Q 011151 311 ALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIEGMQSVKRVG 382 (492)
Q Consensus 311 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 382 (492)
.+..++.+++|++++|.+.. +++.++..+++|+.|+|++|.+....+.+..+++|++|++++|+ ++.++
T Consensus 190 ~~~~~~~l~~L~~s~n~l~~--~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~ 258 (305)
T d1xkua_ 190 SLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIG 258 (305)
T ss_dssp GGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred Hhhccccccccccccccccc--cccccccccccceeeecccccccccccccccccCCCEEECCCCc-cCccC
Confidence 44555566666666665555 44555556666666666666444332335556666666666654 44443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.81 E-value=1.5e-20 Score=175.58 Aligned_cols=247 Identities=22% Similarity=0.203 Sum_probs=173.8
Q ss_pred CeeeEEecchhhhhhcccccc---ccCchhhccCcCCEEEccC-CCCccccchhhhcCCCCCeeecCccccccccccccc
Q 011151 123 TCLRALKLEVRQRWLCKNFIK---KIPTNIEKLLHLKYLSLCG-QREIEKLPETLCELYNLERLNITSCNHLRELPQGIG 198 (492)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~~~~---~l~~~~~~l~~L~~L~L~~-~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 198 (492)
.+++.|+|+ ++.+. .+|..++++++|++|+|++ |.+.+.+|..++++++|++|++++|.+....+..+.
T Consensus 50 ~~v~~L~L~-------~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 50 YRVNNLDLS-------GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEE-------CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEEECC-------CCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 358888888 65554 5889999999999999997 565568999999999999999999996666777788
Q ss_pred CCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc-CCceEec--CCCCCChhhhhHhh
Q 011151 199 KLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL-RECSIRG--LGGVSDAGEARRAE 275 (492)
Q Consensus 199 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-~~l~~~~--~~~~~~~~~~~~~~ 275 (492)
.+.+|+++++++|.+...+|..+..++.++.+++..+.....++..+.. +..+ +.+.... +..... ..
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~---l~~l~~~l~~~~n~l~~~~~------~~ 193 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNRLTGKIP------PT 193 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC---CCTTCCEEECCSSEEEEECC------GG
T ss_pred chhhhcccccccccccccCchhhccCcccceeecccccccccccccccc---cccccccccccccccccccc------cc
Confidence 9999999999999988889999999999999998877665322323333 3322 1122211 111111 22
Q ss_pred hcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCC
Q 011151 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC 355 (492)
Q Consensus 276 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~ 355 (492)
+..+ ....+++..+.+ ....+..+..+++++.+++.++.... . +..+..+++|+.|++++|.+.
T Consensus 194 ~~~l-~~~~l~l~~~~~------------~~~~~~~~~~~~~l~~l~~~~~~l~~--~-~~~~~~~~~L~~L~Ls~N~l~ 257 (313)
T d1ogqa_ 194 FANL-NLAFVDLSRNML------------EGDASVLFGSDKNTQKIHLAKNSLAF--D-LGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp GGGC-CCSEEECCSSEE------------EECCGGGCCTTSCCSEEECCSSEECC--B-GGGCCCCTTCCEEECCSSCCE
T ss_pred cccc-cccccccccccc------------cccccccccccccccccccccccccc--c-ccccccccccccccCccCeec
Confidence 3333 333566666552 23345566677888888888887665 3 445677888888888888887
Q ss_pred CcCCC-CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccc
Q 011151 356 EHLPP-LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEEL 414 (492)
Q Consensus 356 ~~~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 414 (492)
+.+|. ++.+++|++|+|++|+....++.. +.+++|+.+++.+++.+
T Consensus 258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-------------~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------------GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-------------TTGGGSCGGGTCSSSEE
T ss_pred ccCChHHhCCCCCCEEECcCCcccccCCCc-------------ccCCCCCHHHhCCCccc
Confidence 66665 778888888888888733344421 15667777777665533
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.80 E-value=1.3e-18 Score=161.61 Aligned_cols=257 Identities=16% Similarity=0.158 Sum_probs=126.2
Q ss_pred cccccccCchhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccc
Q 011151 139 KNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYL 217 (492)
Q Consensus 139 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~ 217 (492)
+..++.+|..+. +++++|++++|. ++.+|+ .+.++++|++|++++|......|..+.++++|++|++++|.+ +.+
T Consensus 19 ~~~L~~lP~~l~--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l-~~l 94 (305)
T d1xkua_ 19 DLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 94 (305)
T ss_dssp TSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBC
T ss_pred CCCCCccCCCCC--CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc-CcC
Confidence 455566665542 456666666666 565654 355666666666666663333344566666666666666644 233
Q ss_pred cccccccccccccceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCch
Q 011151 218 PVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDE 297 (492)
Q Consensus 218 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 297 (492)
|... ...++.|....+.... +.. ..+.....+..+....+...
T Consensus 95 ~~~~--~~~l~~L~~~~n~l~~-----l~~--------------------------~~~~~~~~~~~l~~~~n~~~---- 137 (305)
T d1xkua_ 95 PEKM--PKTLQELRVHENEITK-----VRK--------------------------SVFNGLNQMIVVELGTNPLK---- 137 (305)
T ss_dssp CSSC--CTTCCEEECCSSCCCB-----BCH--------------------------HHHTTCTTCCEEECCSSCCC----
T ss_pred ccch--hhhhhhhhccccchhh-----hhh--------------------------hhhhcccccccccccccccc----
Confidence 3322 1233333322221111 000 01112222233333322210
Q ss_pred hhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 298 EQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
........+..+++|+.++++++.+.. + +.. .+++|+.|++++|......+. +..++.++.|++++|.
T Consensus 138 ------~~~~~~~~~~~l~~L~~l~l~~n~l~~--l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~ 206 (305)
T d1xkua_ 138 ------SSGIENGAFQGMKKLSYIRIADTNITT--I-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206 (305)
T ss_dssp ------GGGBCTTGGGGCTTCCEEECCSSCCCS--C-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred ------ccCCCccccccccccCccccccCCccc--c-Ccc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccc
Confidence 001111223334455555555555444 4 222 245666666666655544433 5556666666666664
Q ss_pred cceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCc-------
Q 011151 377 SVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPD------- 449 (492)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~------- 449 (492)
++.++...+. .+++|++|+++++. ++. +|.++..+++|+.|++++| +++.++.
T Consensus 207 -l~~~~~~~~~-----------~l~~L~~L~L~~N~-L~~------lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~ 266 (305)
T d1xkua_ 207 -ISAVDNGSLA-----------NTPHLRELHLNNNK-LVK------VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPG 266 (305)
T ss_dssp -CCEECTTTGG-----------GSTTCCEEECCSSC-CSS------CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSS
T ss_pred -cccccccccc-----------ccccceeeeccccc-ccc------cccccccccCCCEEECCCC-ccCccChhhccCcc
Confidence 4444332221 56667777666653 433 3345556777777777774 5665542
Q ss_pred ccCCCCCCCeEEEeCCCc
Q 011151 450 LLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 450 ~l~~l~~L~~L~l~~c~~ 467 (492)
.....++|+.|++++||.
T Consensus 267 ~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 267 YNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CCTTSCCCSEEECCSSSS
T ss_pred hhcccCCCCEEECCCCcC
Confidence 123456677777777763
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.5e-17 Score=152.62 Aligned_cols=221 Identities=20% Similarity=0.176 Sum_probs=132.4
Q ss_pred EEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch-hhccC
Q 011151 75 LLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN-IEKLL 153 (492)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~~l~ 153 (492)
..++.++..+|..+. +.++.|++++|. ++...+.+|.++++|++|+++ ++.+..++.. +.++.
T Consensus 17 ~c~~~~L~~iP~~ip------~~~~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~ls-------~n~l~~i~~~~~~~~~ 80 (284)
T d1ozna_ 17 SCPQQGLQAVPVGIP------AASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-------SNVLARIDAAAFTGLA 80 (284)
T ss_dssp ECCSSCCSSCCTTCC------TTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-------SSCCCEECTTTTTTCT
T ss_pred EcCCCCCCccCCCCC------CCCCEEECcCCc---CCCCCHHHhhccccccccccc-------cccccccccccccccc
Confidence 344455666665443 456777777776 666445567777777777777 6777666533 55667
Q ss_pred cCCEEEccCCCCcccc-chhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccce
Q 011151 154 HLKYLSLCGQREIEKL-PETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTK 232 (492)
Q Consensus 154 ~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 232 (492)
.++.+....+..+..+ +..+.++++|++|++++|......+..+..+.+|+.+++++|.+....+..+..+++|+.|++
T Consensus 81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l 160 (284)
T d1ozna_ 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (284)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccc
Confidence 7777766554435555 334667777777777777733333444566777777777777664433344555555655555
Q ss_pred EEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhc
Q 011151 233 FVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEAL 312 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l 312 (492)
..+.... ++. ..+.++++|+.+++.+|.+++ ..+..+
T Consensus 161 ~~N~l~~-------------------------l~~------~~f~~l~~L~~l~l~~N~l~~------------i~~~~f 197 (284)
T d1ozna_ 161 HGNRISS-------------------------VPE------RAFRGLHSLDRLLLHQNRVAH------------VHPHAF 197 (284)
T ss_dssp CSSCCCE-------------------------ECT------TTTTTCTTCCEEECCSSCCCE------------ECTTTT
T ss_pred ccCcccc-------------------------cch------hhhccccccchhhhhhccccc------------cChhHh
Confidence 4432211 000 224455666667776666431 223455
Q ss_pred CCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCC
Q 011151 313 GPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCE 356 (492)
Q Consensus 313 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~ 356 (492)
..+++|++|++++|.+.. +++.++..+++|++|++++|....
T Consensus 198 ~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 198 RDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hhhhhccccccccccccc--ccccccccccccCEEEecCCCCCC
Confidence 566677777777776666 545666677777777777665443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.66 E-value=6.2e-15 Score=139.16 Aligned_cols=54 Identities=30% Similarity=0.381 Sum_probs=39.5
Q ss_pred ccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccCCCCCCCeEEEeCCC
Q 011151 399 AFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLLQKTTLQKLLIGRCP 466 (492)
Q Consensus 399 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 466 (492)
.+|+|++|++++|. ++.+ |. .+++|+.|++++| .++++|.. +++|++|++++|+
T Consensus 282 ~~~~L~~L~Ls~N~-l~~l------p~---~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIEL------PA---LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP 335 (353)
T ss_dssp CCTTCCEEECCSSC-CSCC------CC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCc-cCcc------cc---ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc
Confidence 56788888888874 5443 22 4678889999874 67788753 4678889998887
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.6e-16 Score=142.59 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
+++|+.+++++|.+.. +++..+..+++|++|+|++|.+. .+|. +..+++|+.|+|++|+
T Consensus 147 l~~l~~l~l~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 147 TPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cccchhcccccccccc--cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 4455555555555554 43455566666666666666544 3333 5556666666666654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.64 E-value=1.7e-15 Score=143.17 Aligned_cols=297 Identities=20% Similarity=0.190 Sum_probs=171.8
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
++++|+++++++..+|. ..++|++|++++|. ++. +|+. ..+|+.|+++ ++.+..++..
T Consensus 39 ~l~~LdLs~~~L~~lp~-------~~~~L~~L~Ls~N~---l~~-lp~~---~~~L~~L~l~-------~n~l~~l~~l- 96 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPE-------LPPHLESLVASCNS---LTE-LPEL---PQSLKSLLVD-------NNNLKALSDL- 96 (353)
T ss_dssp TCSEEECTTSCCSCCCS-------CCTTCSEEECCSSC---CSS-CCCC---CTTCCEEECC-------SSCCSCCCSC-
T ss_pred CCCEEEeCCCCCCCCCC-------CCCCCCEEECCCCC---Ccc-cccc---hhhhhhhhhh-------hcccchhhhh-
Confidence 56688888888877664 24678888888887 554 4543 3467788888 7777666532
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
.+.|++|++++|. +..+|. ++.+++|++|+++++. ....+.. ...+..+.+..+... .+..+..++.++.
T Consensus 97 --p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~ 166 (353)
T d1jl5a_ 97 --PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTA 166 (353)
T ss_dssp --CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCE
T ss_pred --ccccccccccccc-cccccc-hhhhccceeecccccc-ccccccc---cccccchhhcccccc--cccccccccccee
Confidence 1468888888888 777875 5778888888888877 4444432 345556666555321 2234555666666
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHh
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLL 309 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 309 (492)
+.+..+.... ....... .+.+..... .... ......++.|+.+.++.+.....
T Consensus 167 L~l~~n~~~~----~~~~~~~---~~~l~~~~~-~~~~-----~~~~~~l~~L~~l~l~~n~~~~~-------------- 219 (353)
T d1jl5a_ 167 IYADNNSLKK----LPDLPLS---LESIVAGNN-ILEE-----LPELQNLPFLTTIYADNNLLKTL-------------- 219 (353)
T ss_dssp EECCSSCCSS----CCCCCTT---CCEEECCSS-CCSS-----CCCCTTCTTCCEEECCSSCCSSC--------------
T ss_pred cccccccccc----ccccccc---ccccccccc-cccc-----ccccccccccccccccccccccc--------------
Confidence 6555443322 0000000 001111110 0000 01245567788888877763211
Q ss_pred hhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCC----------------CcCCC-CCCCCccceeec
Q 011151 310 EALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC----------------EHLPP-LGKLPSLESLYI 372 (492)
Q Consensus 310 ~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~----------------~~~~~-l~~l~~L~~L~l 372 (492)
.....++..+.+..+.... . +. ....+...++..+... ..+.. ...+++|++|++
T Consensus 220 --~~~~~~l~~~~~~~~~~~~--~-~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 291 (353)
T d1jl5a_ 220 --PDLPPSLEALNVRDNYLTD--L-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291 (353)
T ss_dssp --CSCCTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEEC
T ss_pred --ccccccccccccccccccc--c-cc---ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEEC
Confidence 1223456666666655544 2 21 1122222332222110 01111 233679999999
Q ss_pred cccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCccccccccCCCCcceEeecCCCCcccCCcccC
Q 011151 373 EGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEIIIMPRLSFLEISGCCKLKALPDLLL 452 (492)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~l~ 452 (492)
++|. ++.++. .+++|+.|++++|. ++++. . .+++|++|++++|+ ++.+|..
T Consensus 292 s~N~-l~~lp~---------------~~~~L~~L~L~~N~-L~~l~------~---~~~~L~~L~L~~N~-L~~lp~~-- 342 (353)
T d1jl5a_ 292 SNNK-LIELPA---------------LPPRLERLIASFNH-LAEVP------E---LPQNLKQLHVEYNP-LREFPDI-- 342 (353)
T ss_dssp CSSC-CSCCCC---------------CCTTCCEEECCSSC-CSCCC------C---CCTTCCEEECCSSC-CSSCCCC--
T ss_pred CCCc-cCcccc---------------ccCCCCEEECCCCc-CCccc------c---ccCCCCEEECcCCc-CCCCCcc--
Confidence 9987 544442 57899999998874 55432 2 46789999999975 8889864
Q ss_pred CCCCCCeEEEe
Q 011151 453 QKTTLQKLLIG 463 (492)
Q Consensus 453 ~l~~L~~L~l~ 463 (492)
..+|+.|.+.
T Consensus 343 -~~~L~~L~~~ 352 (353)
T d1jl5a_ 343 -PESVEDLRMN 352 (353)
T ss_dssp -CTTCCEEECC
T ss_pred -ccccCeeECc
Confidence 3467777654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.3e-15 Score=137.96 Aligned_cols=199 Identities=15% Similarity=0.013 Sum_probs=142.2
Q ss_pred ceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 70 KILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
....++.+++++..+|..+. ++++.|++++|. ++...+..|..+++|++|+|+ ++.+..++. +
T Consensus 11 ~~~~v~C~~~~L~~iP~~lp------~~l~~L~Ls~N~---i~~l~~~~f~~l~~L~~L~L~-------~N~l~~l~~-~ 73 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTALPPDLP------KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-------RAELTKLQV-D 73 (266)
T ss_dssp TCCEEECTTSCCSSCCSCCC------TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-------TSCCCEEEC-C
T ss_pred CCeEEEccCCCCCeeCcCcC------cCCCEEECcCCc---CCCcCHHHhhccccccccccc-------ccccccccc-c
Confidence 34456666677777776553 578888998887 777556678888889999998 788887764 4
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRR 229 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 229 (492)
..+++|++|++++|. +...+..+..+++|++|+++++......+..+..+.++++|++++|.+....+..+..+++++.
T Consensus 74 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~ 152 (266)
T d1p9ag_ 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (266)
T ss_dssp SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchh
Confidence 678889999998888 7777777888888999998888844444555677888888888888765444444556667777
Q ss_pred cceEEeecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHh
Q 011151 230 VTKFVVGGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLL 309 (492)
Q Consensus 230 L~l~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 309 (492)
+++..+.... ++. ..+..+++|+.|++++|.|+..+.
T Consensus 153 l~l~~N~l~~-------------------------~~~------~~~~~l~~L~~L~Ls~N~L~~lp~------------ 189 (266)
T d1p9ag_ 153 LSLANNNLTE-------------------------LPA------GLLNGLENLDTLLLQENSLYTIPK------------ 189 (266)
T ss_dssp EECTTSCCSC-------------------------CCT------TTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred cccccccccc-------------------------cCc------cccccccccceeecccCCCcccCh------------
Confidence 6665543321 111 235567788888888888876542
Q ss_pred hhcCCCCCccEEEEeecCCCc
Q 011151 310 EALGPPPNLKELVIDEYRGRR 330 (492)
Q Consensus 310 ~~l~~~~~L~~L~l~~~~~~~ 330 (492)
.+..+++|+.|+|++|....
T Consensus 190 -~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 190 -GFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp -TTTTTCCCSEEECCSCCBCC
T ss_pred -hHCCCCCCCEEEecCCCCCC
Confidence 33456788889998887654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.7e-15 Score=138.63 Aligned_cols=172 Identities=17% Similarity=0.115 Sum_probs=96.6
Q ss_pred EEEccCCCCccccchhhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 157 YLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 157 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
.++.++++ ++++|..+. ..+++|++++|. ++.+|. .+.++++|++|+++++.+....+..+..+..+..+.....
T Consensus 15 ~v~c~~~~-L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 15 TTSCPQQG-LQAVPVGIP--AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp EEECCSSC-CSSCCTTCC--TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCC-CCccCCCCC--CCCCEEECcCCc-CCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 34566666 788887654 578999999998 667764 5889999999999999775544444444444444322211
Q ss_pred ecccCCCcCccccccccccCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCC
Q 011151 236 GGGYDRARSLGSLKKLNLLRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPP 315 (492)
Q Consensus 236 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 315 (492)
... ..++. ..+.++++|+.|+++.|.+... ....+...
T Consensus 91 ~~~------------------------~~l~~------~~~~~l~~L~~L~l~~n~~~~~------------~~~~~~~~ 128 (284)
T d1ozna_ 91 AQL------------------------RSVDP------ATFHGLGRLHTLHLDRCGLQEL------------GPGLFRGL 128 (284)
T ss_dssp TTC------------------------CCCCT------TTTTTCTTCCEEECTTSCCCCC------------CTTTTTTC
T ss_pred ccc------------------------ccccc------hhhcccccCCEEecCCcccccc------------cccccchh
Confidence 111 11111 2345556666666666653221 11223344
Q ss_pred CCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCC-CCCCCccceeeccccc
Q 011151 316 PNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPP-LGKLPSLESLYIEGMQ 376 (492)
Q Consensus 316 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 376 (492)
++|+.+++++|.+.. +++..+..+++|+.|++++|.+....+. +.++++|+.+++++|.
T Consensus 129 ~~L~~l~l~~N~l~~--i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~ 188 (284)
T d1ozna_ 129 AALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (284)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccchhhhccccccc--cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence 555555555555554 4344455555555555555544333222 4455555555555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=9e-15 Score=128.95 Aligned_cols=79 Identities=24% Similarity=0.244 Sum_probs=43.4
Q ss_pred hcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccccCchhhhccccccEEEEecccCC
Q 011151 276 LEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNC 355 (492)
Q Consensus 276 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~ 355 (492)
+..+++|+.|++.+|.+.+. ..+..+++|++|++++|.+.. + + .++.+++|++|++++|.+
T Consensus 147 ~~~~~~L~~L~l~~n~~~~~--------------~~l~~l~~L~~L~Ls~n~l~~--l-~-~l~~l~~L~~L~Ls~N~l- 207 (227)
T d1h6ua2 147 LAGLTNLQYLSIGNAQVSDL--------------TPLANLSKLTTLKADDNKISD--I-S-PLASLPNLIEVHLKNNQI- 207 (227)
T ss_dssp GGGCTTCCEEECCSSCCCCC--------------GGGTTCTTCCEEECCSSCCCC--C-G-GGGGCTTCCEEECTTSCC-
T ss_pred hccccccccccccccccccc--------------hhhcccccceecccCCCccCC--C-h-hhcCCCCCCEEECcCCcC-
Confidence 44556666666666654221 124455666666666665554 3 2 255666666666666643
Q ss_pred CcCCCCCCCCccceeecc
Q 011151 356 EHLPPLGKLPSLESLYIE 373 (492)
Q Consensus 356 ~~~~~l~~l~~L~~L~l~ 373 (492)
+.++.++.+++|+.|+++
T Consensus 208 t~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 208 SDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp CBCGGGTTCTTCCEEEEE
T ss_pred CCCcccccCCCCCEEEee
Confidence 334445556666666654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=3.6e-14 Score=124.97 Aligned_cols=188 Identities=21% Similarity=0.278 Sum_probs=108.4
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++.+|+.|.+.+|. +.. ++. +..+++|++|+++ ++.+..++. +.++++|+++++++|. ++.++ .+
T Consensus 39 ~l~~L~~L~l~~~~---i~~-l~~-l~~l~~L~~L~ls-------~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l 103 (227)
T d1h6ua2 39 DLDGITTLSAFGTG---VTT-IEG-VQYLNNLIGLELK-------DNQITDLAP-LKNLTKITELELSGNP-LKNVS-AI 103 (227)
T ss_dssp HHHTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred HcCCcCEEECCCCC---CCc-chh-HhcCCCCcEeecC-------Cceeecccc-cccccccccccccccc-ccccc-cc
Confidence 45556666666665 333 222 5556666666666 555555432 5556666666666665 44443 35
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCccccccccc
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNL 253 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 253 (492)
..+++|+.++++++. ...++ .+...+.++.+.++++.+... ..+..+++|+.|.
T Consensus 104 ~~l~~L~~l~l~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~---------------------- 157 (227)
T d1h6ua2 104 AGLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLS---------------------- 157 (227)
T ss_dssp TTCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEE----------------------
T ss_pred ccccccccccccccc-ccccc-hhccccchhhhhchhhhhchh--hhhcccccccccc----------------------
Confidence 556666666666555 22221 244455555555555533221 1133334444443
Q ss_pred cCCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc
Q 011151 254 LRECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV 333 (492)
Q Consensus 254 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l 333 (492)
+........ ..+.++++|+.|++++|.+++. ..+..+++|++|++++|.+.. +
T Consensus 158 -----l~~n~~~~~------~~l~~l~~L~~L~Ls~n~l~~l--------------~~l~~l~~L~~L~Ls~N~lt~--i 210 (227)
T d1h6ua2 158 -----IGNAQVSDL------TPLANLSKLTTLKADDNKISDI--------------SPLASLPNLIEVHLKNNQISD--V 210 (227)
T ss_dssp -----CCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC--------------GGGGGCTTCCEEECTTSCCCB--C
T ss_pred -----ccccccccc------hhhcccccceecccCCCccCCC--------------hhhcCCCCCCEEECcCCcCCC--C
Confidence 332221111 2356778899999999886543 235678899999999998877 6
Q ss_pred CchhhhccccccEEEEec
Q 011151 334 PRNWVMSLTNLRALLLKN 351 (492)
Q Consensus 334 ~~~~~~~l~~L~~L~L~~ 351 (492)
+ .+..+++|+.|++++
T Consensus 211 -~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 211 -S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp -G-GGTTCTTCCEEEEEE
T ss_pred -c-ccccCCCCCEEEeeC
Confidence 3 378999999999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=1.7e-13 Score=118.82 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCCccEEEEeecCCCccccCchhhhccccccEEEEecccCCCcCCCCCCCCccceeecc
Q 011151 315 PPNLKELVIDEYRGRRNVVPRNWVMSLTNLRALLLKNCRNCEHLPPLGKLPSLESLYIE 373 (492)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~ 373 (492)
+++|+.+++++|.+.. + + .+..+++|+.|++++|.+ ++++.+.++++|++|+|+
T Consensus 155 l~~L~~l~l~~n~l~~--i-~-~l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 155 LTKLDTLSLEDNQISD--I-V-PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELF 208 (210)
T ss_dssp CTTCSEEECCSSCCCC--C-G-GGTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEE
T ss_pred cccccccccccccccc--c-c-cccCCCCCCEEECCCCCC-CCChhhcCCCCCCEEEcc
Confidence 3444555555444443 3 2 244555555555555533 234445555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7.6e-14 Score=124.24 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=39.3
Q ss_pred eeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccc-cccccccCC
Q 011151 124 CLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLR-ELPQGIGKL 200 (492)
Q Consensus 124 ~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l 200 (492)
++++|+++ ++.+..+|. .|.++++|++|++++|.....++. .+..+++++++.+..+..+. ..+..+.++
T Consensus 30 ~l~~L~Ls-------~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l 102 (242)
T d1xwdc1 30 NAIELRFV-------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 102 (242)
T ss_dssp CCSEEEEE-------SCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECC
T ss_pred CCCEEECc-------CCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccc
Confidence 45555555 555555554 245555555555555552222322 24445555555544322122 223334555
Q ss_pred CCCcEEecCCCc
Q 011151 201 RKLMYLDNDDTW 212 (492)
Q Consensus 201 ~~L~~L~l~~~~ 212 (492)
++|++|+++++.
T Consensus 103 ~~L~~l~l~~~~ 114 (242)
T d1xwdc1 103 PNLQYLLISNTG 114 (242)
T ss_dssp TTCCEEEEESCC
T ss_pred ccccccccchhh
Confidence 555555555553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9e-15 Score=133.39 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=39.6
Q ss_pred hhccCcCCEEEccCCCCcc-ccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCC
Q 011151 149 IEKLLHLKYLSLCGQREIE-KLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~ 211 (492)
.....+|++|++++|.+.. .++..+.++++|++|++++|......+..+..+++|++|++++|
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c 105 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence 3345577777777776222 23444566777777777777644445555666777777777766
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.2e-15 Score=134.99 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=63.3
Q ss_pred ccCCeeeEEecchhhhhhccccccc--cCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccc--ccc
Q 011151 120 DKLTCLRALKLEVRQRWLCKNFIKK--IPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRE--LPQ 195 (492)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~~~~~--l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--lp~ 195 (492)
.....|++|+++ ++.+.. +...+.++++|++|++++|...+..+..+.++++|++|++++|..++. +..
T Consensus 43 ~~~~~L~~LdLs-------~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~ 115 (284)
T d2astb2 43 FSPFRVQHMDLS-------NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115 (284)
T ss_dssp CCCBCCCEEECT-------TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred ccCCCCCEEECC-------CCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch
Confidence 345678999998 666543 445577889999999999984446667788889999999998764542 333
Q ss_pred cccCCCCCcEEecCCCc
Q 011151 196 GIGKLRKLMYLDNDDTW 212 (492)
Q Consensus 196 ~~~~l~~L~~L~l~~~~ 212 (492)
....+++|++|++++|.
T Consensus 116 l~~~~~~L~~L~ls~c~ 132 (284)
T d2astb2 116 LLSSCSRLDELNLSWCF 132 (284)
T ss_dssp HHHHCTTCCEEECCCCT
T ss_pred hhHHHHhcccccccccc
Confidence 34578889999998874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=2.8e-13 Score=117.41 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=99.1
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
..++++.+.++.+..++ .+. .+++|+.|++++|. +++ ++. ++.+++|++|+++ ++.+..++ .
T Consensus 46 ~~L~~L~l~~~~i~~l~-~l~----~l~~L~~L~L~~n~---i~~-l~~-~~~l~~L~~L~l~-------~n~i~~l~-~ 107 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ-GIQ----YLPNVTKLFLNGNK---LTD-IKP-LANLKNLGWLFLD-------ENKVKDLS-S 107 (210)
T ss_dssp HTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCGG-G
T ss_pred cCccEEECcCCCCCCch-hHh----hCCCCCEEeCCCcc---ccC-ccc-cccCccccccccc-------cccccccc-c
Confidence 36777777777776643 233 67788888888876 555 333 5677788888887 77777765 4
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|+.|++++|. +..++ .+..+++|+.+++++|. +...+ .+..+++|+++++++|.+.. ++ .+..+++|+
T Consensus 108 l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~ 181 (210)
T d1h6ta2 108 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQ 181 (210)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCC
T ss_pred cccccccccccccccc-ccccc-ccccccccccccccccc-ccccc-cccccccccccccccccccc-cc-cccCCCCCC
Confidence 6777888888888877 55554 46777788888887777 44333 36677788888888876643 33 366777777
Q ss_pred ccceEEeec
Q 011151 229 RVTKFVVGG 237 (492)
Q Consensus 229 ~L~l~~~~~ 237 (492)
.|+++.+..
T Consensus 182 ~L~Ls~N~i 190 (210)
T d1h6ta2 182 NLYLSKNHI 190 (210)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 777766543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.43 E-value=3.7e-13 Score=115.68 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=99.8
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.+++.+.+.++.+.++. .+. .+++|++|++++|. +.+ ++. ++.+++|+.|+++ ++.+..++ .
T Consensus 40 ~~l~~L~l~~~~i~~l~-~l~----~l~nL~~L~Ls~N~---l~~-~~~-l~~l~~L~~L~l~-------~n~~~~~~-~ 101 (199)
T d2omxa2 40 DQVTTLQADRLGIKSID-GVE----YLNNLTQINFSNNQ---LTD-ITP-LKNLTKLVDILMN-------NNQIADIT-P 101 (199)
T ss_dssp TTCCEEECTTSCCCCCT-TGG----GCTTCCEEECCSSC---CCC-CGG-GTTCTTCCEEECC-------SSCCCCCG-G
T ss_pred cCCCEEECCCCCCCCcc-ccc----cCCCcCcCcccccc---ccC-ccc-ccCCccccccccc-------cccccccc-c
Confidence 46777777777776642 233 67788888888876 555 333 6777888888887 66666665 3
Q ss_pred hhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcEEecCCCccccccccccccccccc
Q 011151 149 IEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLR 228 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 228 (492)
+.++++|++|++++|. ...++ .+..+++|+.|++++|. +..++ .+..+++|+.|++.+|.+.. ++ .+..+++|+
T Consensus 102 l~~l~~L~~L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~ 175 (199)
T d2omxa2 102 LANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLE 175 (199)
T ss_dssp GTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCC
T ss_pred cccccccccccccccc-ccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccC-Cc-cccCCCCCC
Confidence 6777888888887777 44443 36677788888888777 45554 46777888888888776533 32 366777777
Q ss_pred ccceEEeecc
Q 011151 229 RVTKFVVGGG 238 (492)
Q Consensus 229 ~L~l~~~~~~ 238 (492)
.|+++++...
T Consensus 176 ~L~ls~N~i~ 185 (199)
T d2omxa2 176 RLDISSNKVS 185 (199)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 7777766543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=9.2e-15 Score=143.12 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=79.5
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccc-cccchhhccCCeeeEEecchhhhhhccccccc---
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFS-EVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK--- 144 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--- 144 (492)
.+++.|+++++.+.+ ..+...++.++++++|.+.+|...... ..+..++..+++|+.|+|+ ++.++.
T Consensus 2 ~~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs-------~N~i~~~~~ 72 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-------SNELGDVGV 72 (460)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-------TCCCHHHHH
T ss_pred CCCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECc-------CCcCChHHH
Confidence 578999999999985 333334457899999999999732111 1255667889999999999 777753
Q ss_pred --cCchhh-ccCcCCEEEccCCCCccc-----cchhhhcCCCCCeeecCcccc
Q 011151 145 --IPTNIE-KLLHLKYLSLCGQREIEK-----LPETLCELYNLERLNITSCNH 189 (492)
Q Consensus 145 --l~~~~~-~l~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~ 189 (492)
+...+. ...+|++|++++|. ++. ++..+..+++|++|++++|..
T Consensus 73 ~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 73 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccc
Confidence 222222 23579999999998 543 445577889999999999873
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=9.7e-13 Score=112.97 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=89.6
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhh
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETL 173 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 173 (492)
++++++.|+++++. +.. ++. +..+++|++|+++ ++.+..++. ++++++|++|++++|. +..++. +
T Consensus 38 ~l~~l~~L~l~~~~---i~~-l~~-l~~l~nL~~L~Ls-------~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l 102 (199)
T d2omxa2 38 DLDQVTTLQADRLG---IKS-IDG-VEYLNNLTQINFS-------NNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-L 102 (199)
T ss_dssp HHTTCCEEECTTSC---CCC-CTT-GGGCTTCCEEECC-------SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HhcCCCEEECCCCC---CCC-ccc-cccCCCcCcCccc-------cccccCccc-ccCCcccccccccccc-cccccc-c
Confidence 56788888888887 333 222 6778888889888 778877764 7888888888888888 676764 7
Q ss_pred hcCCCCCeeecCcccccccccccccCCCCCcEEecCCCcccccccccccccccccccceEEe
Q 011151 174 CELYNLERLNITSCNHLRELPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVV 235 (492)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 235 (492)
.++++|+.|++++|. ....+ .+..+++|+.|++++|.+. .++ .+..+++|+.|.+..+
T Consensus 103 ~~l~~L~~L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n 160 (199)
T d2omxa2 103 ANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSN 160 (199)
T ss_dssp TTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSS
T ss_pred ccccccccccccccc-ccccc-ccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccc
Confidence 788888888888887 33333 3677888888888888653 232 4566667776665544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=5e-13 Score=104.80 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=77.8
Q ss_pred eEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCC
Q 011151 99 RSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYN 178 (492)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 178 (492)
|+|++++|. ++. ++. +..+++|++|+++ +|.+..+|+.+..+++|++|++++|. ++.+| .+..+++
T Consensus 1 R~L~Ls~n~---l~~-l~~-l~~l~~L~~L~ls-------~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~ 66 (124)
T d1dcea3 1 RVLHLAHKD---LTV-LCH-LEQLLLVTHLDLS-------HNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPR 66 (124)
T ss_dssp SEEECTTSC---CSS-CCC-GGGGTTCCEEECC-------SSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSS
T ss_pred CEEEcCCCC---CCC-Ccc-cccCCCCCEEECC-------CCccCcchhhhhhhhccccccccccc-ccccC-ccccccc
Confidence 577888887 554 343 6778888888888 88888888778888888888888888 77776 4788888
Q ss_pred CCeeecCccccccccc--ccccCCCCCcEEecCCCccc
Q 011151 179 LERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 179 L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~ 214 (492)
|++|++++|. +..+| ..++.+++|++|++++|.+.
T Consensus 67 L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 67 LQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 8888888888 55444 34677888888888888664
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=5.1e-13 Score=110.18 Aligned_cols=126 Identities=22% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchh-
Q 011151 94 GLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPET- 172 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~- 172 (492)
++..+|.|++++|. ++. ++..+..+++|++|+++ +|.+..++ .+..+++|++|++++|. +..+|..
T Consensus 16 n~~~lr~L~L~~n~---I~~-i~~~~~~l~~L~~L~Ls-------~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~ 82 (162)
T d1a9na_ 16 NAVRDRELDLRGYK---IPV-IENLGATLDQFDAIDFS-------DNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGL 82 (162)
T ss_dssp CTTSCEEEECTTSC---CCS-CCCGGGGTTCCSEEECC-------SSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCH
T ss_pred CcCcCcEEECCCCC---CCc-cCccccccccCCEEECC-------CCCCCccC-CcccCcchhhhhccccc-ccCCCccc
Confidence 67788888888888 555 45556778888888888 88888874 47788888888888888 7777654
Q ss_pred hhcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCccccccc----ccccccccccccceEE
Q 011151 173 LCELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRYLP----VGIGELINLRRVTKFV 234 (492)
Q Consensus 173 ~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~ 234 (492)
+..+++|++|++++|. +..++ ..+..+++|++|++++|.+.. .| ..+..+++|+.|+...
T Consensus 83 ~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~~ 148 (162)
T d1a9na_ 83 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQK 148 (162)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEE
T ss_pred cccccccccceecccc-ccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCCCC
Confidence 4568888888888888 55544 346778888888888886633 23 2356677777776443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.3e-12 Score=115.98 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=77.3
Q ss_pred eEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccccccc-ccccCCCCC
Q 011151 126 RALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLRELP-QGIGKLRKL 203 (492)
Q Consensus 126 ~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 203 (492)
++++.+ +..+..+|+.+. .++++|++++|. ++.+|. .+.++++|++|++++|.....++ ..+..++++
T Consensus 11 ~~i~c~-------~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l 80 (242)
T d1xwdc1 11 RVFLCQ-------ESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80 (242)
T ss_dssp SEEEEE-------SCSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred CEEEEe-------CCCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccc
Confidence 567777 677888887653 589999999998 888876 47889999999999998555554 346788999
Q ss_pred cEEecCCC-cccccccccccccccccccceEEeecc
Q 011151 204 MYLDNDDT-WFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 204 ~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+++.+..+ .+....+..+..+++|+.+.+..+...
T Consensus 81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccccccccccccccccccccccchhhhc
Confidence 99887654 444445556788888888888776543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=2e-12 Score=101.32 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=87.6
Q ss_pred eEEecchhhhhhccccccccCchhhccCcCCEEEccCCCCccccchhhhcCCCCCeeecCcccccccccccccCCCCCcE
Q 011151 126 RALKLEVRQRWLCKNFIKKIPTNIEKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELPQGIGKLRKLMY 205 (492)
Q Consensus 126 ~~L~L~~~~~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 205 (492)
|+|+++ ++.+..++ .+..+.+|++|++++|. ++.+|..++.+++|++|++++|. +..+|. +..+++|++
T Consensus 1 R~L~Ls-------~n~l~~l~-~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~ 69 (124)
T d1dcea3 1 RVLHLA-------HKDLTVLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQE 69 (124)
T ss_dssp SEEECT-------TSCCSSCC-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCE
T ss_pred CEEEcC-------CCCCCCCc-ccccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccc-ccccCc-cccccccCe
Confidence 689999 99999887 48999999999999999 89999889999999999999999 677764 899999999
Q ss_pred EecCCCcccccc-cccccccccccccceEEeecc
Q 011151 206 LDNDDTWFLRYL-PVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 206 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 238 (492)
|++++|.+.... +..+..+++|+.|++.++...
T Consensus 70 L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred EECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 999999875432 245778889999988877654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.6e-12 Score=105.81 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=103.1
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.++|.|++++|.+..++..+. .+++|+.|++++|. +.. ++. |..+++|+.|+++ +|.+..++..
T Consensus 18 ~~lr~L~L~~n~I~~i~~~~~----~l~~L~~L~Ls~N~---i~~-l~~-~~~l~~L~~L~ls-------~N~i~~l~~~ 81 (162)
T d1a9na_ 18 VRDRELDLRGYKIPVIENLGA----TLDQFDAIDFSDNE---IRK-LDG-FPLLRRLKTLLVN-------NNRICRIGEG 81 (162)
T ss_dssp TSCEEEECTTSCCCSCCCGGG----GTTCCSEEECCSSC---CCE-ECC-CCCCSSCCEEECC-------SSCCCEECSC
T ss_pred CcCcEEECCCCCCCccCcccc----ccccCCEEECCCCC---CCc-cCC-cccCcchhhhhcc-------cccccCCCcc
Confidence 578999999999998765444 78999999999998 555 333 8889999999999 9999999865
Q ss_pred -hhccCcCCEEEccCCCCccccch--hhhcCCCCCeeecCcccccccccc----cccCCCCCcEEecC
Q 011151 149 -IEKLLHLKYLSLCGQREIEKLPE--TLCELYNLERLNITSCNHLRELPQ----GIGKLRKLMYLDND 209 (492)
Q Consensus 149 -~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~ 209 (492)
+..+++|+.|++++|. +..++. .+..+++|++|++++|. +...|. .+..+++|++||-.
T Consensus 82 ~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 82 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 5689999999999999 776653 57889999999999998 565553 46789999999843
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.25 E-value=8.5e-12 Score=106.27 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=95.1
Q ss_pred EEEEEeecCCCcccccccCccCCCCceEEEeccCCcccccc-ccchhhccCCeeeEEecchhhhhhccccccccC-chhh
Q 011151 73 HLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSE-VLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIE 150 (492)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~ 150 (492)
.++.+++++..+|..+. ++++.|++++|. +.. ..+..|..+++|+.|+++ ++.+..++ ..+.
T Consensus 12 ~v~Cs~~~L~~iP~~lp------~~l~~L~Ls~N~---i~~~~~~~~f~~l~~L~~L~L~-------~N~i~~~~~~~~~ 75 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP------LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELK-------RNQLTGIEPNAFE 75 (192)
T ss_dssp EEECTTSCCSSCCSCCC------TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECC-------SSCCCCBCTTTTT
T ss_pred EEEEeCCCcCccCCCCC------CCCCEEEeCCCC---CcccccccccCCCceEeeeecc-------ccccccccccccc
Confidence 56667777777777654 678889999888 544 335557888899999998 77777665 4577
Q ss_pred ccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCcccccccc-cccccCCCCCcEEecCCCccc
Q 011151 151 KLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHLREL-PQGIGKLRKLMYLDNDDTWFL 214 (492)
Q Consensus 151 ~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~ 214 (492)
.+++|++|++++|. +..+|+ .|.++++|++|++++|. +..+ |..+..+++|++|++++|.+.
T Consensus 76 ~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 76 GASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccceeeecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence 88889999999998 777755 47788999999999988 5555 445778889999999888653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=5.6e-13 Score=113.96 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=95.7
Q ss_pred EEEEEEee--cCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCchh
Q 011151 72 LHLLLTLH--RGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTNI 149 (492)
Q Consensus 72 ~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 149 (492)
..+.+.+. .++.++.++. .+++|+.|++++|. ++. ++. +..+++|++|+++ +|.+..+|...
T Consensus 26 ~~~~l~~~~~~i~~l~~sl~----~L~~L~~L~Ls~n~---I~~-i~~-l~~l~~L~~L~Ls-------~N~i~~i~~~~ 89 (198)
T d1m9la_ 26 EKVELHGMIPPIEKMDATLS----TLKACKHLALSTNN---IEK-ISS-LSGMENLRILSLG-------RNLIKKIENLD 89 (198)
T ss_dssp SCEECCBCCTTCCCCHHHHH----HTTTCCEEECSEEE---ESC-CCC-HHHHTTCCEEECC-------EEEECSCSSHH
T ss_pred ceeeeecccCchhhhhhHHh----cccccceeECcccC---CCC-ccc-ccCCccccChhhc-------ccccccccccc
Confidence 34444433 3444555565 88999999999987 555 443 7888999999999 88888888766
Q ss_pred hccCcCCEEEccCCCCccccchhhhcCCCCCeeecCccccccccc--ccccCCCCCcEEecCCCccccc
Q 011151 150 EKLLHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNHLRELP--QGIGKLRKLMYLDNDDTWFLRY 216 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~ 216 (492)
..+++|++|++++|. ++.++ .+..+++|++|++++|. +..++ ..+..+++|+.|++++|.+...
T Consensus 90 ~~~~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 90 AVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHCCEEECSEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccccccccccc-ccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCccccC
Confidence 667789999999998 77774 47888999999999998 55554 3578899999999999876443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1e-13 Score=135.57 Aligned_cols=343 Identities=17% Similarity=0.137 Sum_probs=197.6
Q ss_pred CCceEEEeccCCcccccc-ccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCCccc-
Q 011151 96 RGLRSLLVESDDYSWFSE-VLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQREIEK- 168 (492)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~- 168 (492)
.+|+.|+++++. +.+ .+.+.+..++++++|+|+ ++.+.. +...+..+++|++|+|++|. ++.
T Consensus 2 ~~l~~ld~~~~~---i~~~~~~~l~~~l~~l~~L~L~-------~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~ 70 (460)
T d1z7xw1 2 LDIQSLDIQCEE---LSDARWAELLPLLQQCQVVRLD-------DCGLTEARCKDISSALRVNPALAELNLRSNE-LGDV 70 (460)
T ss_dssp EEEEEEEEESCC---CCHHHHHHHHHHHTTCSEEEEE-------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHH
T ss_pred CCCCEEEeeCCc---CChHHHHHHHHhCCCCCEEEeC-------CCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChH
Confidence 468999999988 433 134556778999999999 776653 44557789999999999998 542
Q ss_pred ----cchhhh-cCCCCCeeecCcccccc----cccccccCCCCCcEEecCCCccccccccccc-----------------
Q 011151 169 ----LPETLC-ELYNLERLNITSCNHLR----ELPQGIGKLRKLMYLDNDDTWFLRYLPVGIG----------------- 222 (492)
Q Consensus 169 ----lp~~~~-~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~----------------- 222 (492)
+...+. ...+|++|++++|.+.. .++..+..+++|++|++++|.+.......+.
T Consensus 71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~ 150 (460)
T d1z7xw1 71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 150 (460)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc
Confidence 222222 23579999999998433 2456678899999999999975432111110
Q ss_pred ----------------ccccccccceEEeecccC-CCcCccccccc-cccCCceEecCCCCCChhhhhHhhhcccCCcce
Q 011151 223 ----------------ELINLRRVTKFVVGGGYD-RARSLGSLKKL-NLLRECSIRGLGGVSDAGEARRAELEKKKNLVE 284 (492)
Q Consensus 223 ----------------~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L-~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 284 (492)
....++.+.+........ .......+... .....+..................+...+.++.
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (460)
T d1z7xw1 151 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred cccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 001111111111100000 00000000000 011112222222222222233345566778888
Q ss_pred EecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCcccc--CchhhhccccccEEEEecccCCCc----C
Q 011151 285 LGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNVV--PRNWVMSLTNLRALLLKNCRNCEH----L 358 (492)
Q Consensus 285 L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l--~~~~~~~l~~L~~L~L~~~~~~~~----~ 358 (492)
+.+..+.+.+ ................++.+++++|.+..... ...++...+.++.+++++|.+... +
T Consensus 231 l~~~~n~~~~-------~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l 303 (460)
T d1z7xw1 231 LALGSNKLGD-------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303 (460)
T ss_dssp EECCSSBCHH-------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred cchhhccccc-------cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 8888776311 01122334445567899999999988765211 022345678899999999866432 1
Q ss_pred CC--CCCCCccceeeccccccceeecccccCCcCCCCCCcccccccccceeccCcccccccccCcccccccc-CCCCcce
Q 011151 359 PP--LGKLPSLESLYIEGMQSVKRVGNEFLGVESDTDGSSIIAFPKLKHLKFYDMEELEEWDFGTAIKGEII-IMPRLSF 435 (492)
Q Consensus 359 ~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~L~~ 435 (492)
.. ....+.|+.+++++|. +...+....+. .....++|++|+++++. +.+-.+. .++..+. ..+.|++
T Consensus 304 ~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~-------~~~~~~~L~~L~Ls~N~-i~~~g~~-~l~~~l~~~~~~L~~ 373 (460)
T d1z7xw1 304 CETLLEPGCQLESLWVKSCS-FTAACCSHFSS-------VLAQNRFLLELQISNNR-LEDAGVR-ELCQGLGQPGSVLRV 373 (460)
T ss_dssp HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-------HHHHCSSCCEEECCSSB-CHHHHHH-HHHHHHTSTTCCCCE
T ss_pred hccccccccccccccccccc-hhhhhhhhccc-------ccccccchhhhheeeec-ccCcccc-hhhhhhhcccCCCCE
Confidence 11 2234689999999886 32211111110 01256789999999874 5432211 1112222 4678999
Q ss_pred EeecCCCCccc-----CCcccCCCCCCCeEEEeCCCc
Q 011151 436 LEISGCCKLKA-----LPDLLLQKTTLQKLLIGRCPI 467 (492)
Q Consensus 436 L~l~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~~ 467 (492)
|++++|+ +++ ++..+..+++|++|++++|+.
T Consensus 374 L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i 409 (460)
T d1z7xw1 374 LWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 409 (460)
T ss_dssp EECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred EECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence 9999985 543 445566789999999999963
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=5.4e-11 Score=101.15 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=99.1
Q ss_pred ceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccc-cC-chhhccCcCCEEEccCCCCccccchhhhc
Q 011151 98 LRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-IP-TNIEKLLHLKYLSLCGQREIEKLPETLCE 175 (492)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 175 (492)
.++++.+++. ++. +|..+ .+++++|+|+ ++.+.. ++ ..|.++++|+.|++++|.+....+..+..
T Consensus 10 ~~~v~Cs~~~---L~~-iP~~l--p~~l~~L~Ls-------~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~ 76 (192)
T d1w8aa_ 10 GTTVDCTGRG---LKE-IPRDI--PLHTTELLLN-------DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TTEEECTTSC---CSS-CCSCC--CTTCSEEECC-------SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCEEEEeCCC---cCc-cCCCC--CCCCCEEEeC-------CCCCcccccccccCCCceEeeeecccccccccccccccc
Confidence 3567777776 555 55433 2578999999 888865 43 45789999999999999944444556888
Q ss_pred CCCCCeeecCcccccccc-cccccCCCCCcEEecCCCcccccccccccccccccccceEEeecc
Q 011151 176 LYNLERLNITSCNHLREL-PQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGG 238 (492)
Q Consensus 176 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 238 (492)
+++|++|++++|. +..+ |..+.++++|++|++++|.+....+..+..+++|++|++..+...
T Consensus 77 ~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 77 ASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccceeeecccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 9999999999999 5555 456889999999999999886666667888999999988877554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.05 E-value=4e-11 Score=112.17 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=72.1
Q ss_pred cCCCCceEEEeccCCcccc-ccccchhhccCCeeeEEecchhhhhhccccccc-----------cCchhhccCcCCEEEc
Q 011151 93 KGLRGLRSLLVESDDYSWF-SEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----------IPTNIEKLLHLKYLSL 160 (492)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----------l~~~~~~l~~L~~L~L 160 (492)
.+...++.|++++|....- ...+...+...+.|+.|+++ ++.... +...+..+++|+.|++
T Consensus 28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECC-------CCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 3667777777777752110 01133345566777777776 332221 2233445677888888
Q ss_pred cCCCCccc-----cchhhhcCCCCCeeecCccccccc----ccc---------cccCCCCCcEEecCCCccccc----cc
Q 011151 161 CGQREIEK-----LPETLCELYNLERLNITSCNHLRE----LPQ---------GIGKLRKLMYLDNDDTWFLRY----LP 218 (492)
Q Consensus 161 ~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----lp~---------~~~~l~~L~~L~l~~~~~~~~----~~ 218 (492)
++|. ++. +...+..+++|++|++++|.+... +.. .....+.|+.++++++.+... +.
T Consensus 101 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 101 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred cccc-cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 8776 432 334455677788888877763211 000 113456788888877754322 11
Q ss_pred ccccccccccccceEEe
Q 011151 219 VGIGELINLRRVTKFVV 235 (492)
Q Consensus 219 ~~l~~l~~L~~L~l~~~ 235 (492)
..+...+.|+.|++..+
T Consensus 180 ~~l~~~~~L~~L~L~~n 196 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQN 196 (344)
T ss_dssp HHHHHCTTCCEEECCSS
T ss_pred chhhhhhhhcccccccc
Confidence 22334455555554433
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.02 E-value=2.1e-11 Score=114.20 Aligned_cols=232 Identities=16% Similarity=0.074 Sum_probs=120.1
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCCccc-----------cchhhhcCCC
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQREIEK-----------LPETLCELYN 178 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~-----------lp~~~~~l~~ 178 (492)
+...+.....|+.|+|+ ++.+.. +...+...++|+.|+++++. ... +...+..+++
T Consensus 23 l~~~L~~~~~l~~L~Ls-------~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~ 94 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLS-------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 94 (344)
T ss_dssp TSHHHHHCSCCCEEECT-------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhCCCCCEEECc-------CCcCCHHHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCC
Confidence 34446778889999998 666643 33456677899999998775 321 2233456788
Q ss_pred CCeeecCccccccc----ccccccCCCCCcEEecCCCcccccccccccccccccccceEEeecccCCCcCcccccccccc
Q 011151 179 LERLNITSCNHLRE----LPQGIGKLRKLMYLDNDDTWFLRYLPVGIGELINLRRVTKFVVGGGYDRARSLGSLKKLNLL 254 (492)
Q Consensus 179 L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 254 (492)
|+.|++++|.+... +...+..+++|++|++++|.+.......+.. .+..+... ........|
T Consensus 95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~~------------~~~~~~~~L 160 (344)
T d2ca6a1 95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVN------------KKAKNAPPL 160 (344)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHHH------------HHHHTCCCC
T ss_pred cccccccccccccccccchhhhhcccccchheecccccccccccccccc--cccccccc------------cccccCccc
Confidence 99999998874332 3444567788999999888653221111110 01100000 000111122
Q ss_pred CCceEecCCCCCChhhhhHhhhcccCCcceEecccccCCCCchhhHhhhhHHHHhhhcCCCCCccEEEEeecCCCccc--
Q 011151 255 RECSIRGLGGVSDAGEARRAELEKKKNLVELGLHFDRLRDGDEEQARRRESERLLEALGPPPNLKELVIDEYRGRRNV-- 332 (492)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 332 (492)
+.+.+....-.......+...+..++.|+.|+++.|.+++.. ....+...+..+++|++|++++|.+....
T Consensus 161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g-------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~ 233 (344)
T d2ca6a1 161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG-------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233 (344)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH-------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred ceeecccccccccccccccchhhhhhhhcccccccccccccc-------cccchhhhhcchhhhcccccccccccccccc
Confidence 222222211111111223334555666777777666643110 01112334555666777777766643311
Q ss_pred -cCchhhhccccccEEEEecccCCCcCC-----CC--CCCCccceeeccccc
Q 011151 333 -VPRNWVMSLTNLRALLLKNCRNCEHLP-----PL--GKLPSLESLYIEGMQ 376 (492)
Q Consensus 333 -l~~~~~~~l~~L~~L~L~~~~~~~~~~-----~l--~~l~~L~~L~l~~~~ 376 (492)
+ ...+..+++|++|+|++|.+.+.-. .+ ...+.|++|++++|.
T Consensus 234 ~L-~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 234 AL-AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HH-HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cc-cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence 1 2234466667777777775443200 01 123557777777665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.92 E-value=3.1e-11 Score=102.85 Aligned_cols=121 Identities=25% Similarity=0.337 Sum_probs=96.2
Q ss_pred cceEEEEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccCch
Q 011151 69 KKILHLLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIPTN 148 (492)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 148 (492)
.++++++++++.+..++ .+. ++++|+.|++++|. +.. +|..+..++.|+.|+++ ++.+..++ .
T Consensus 48 ~~L~~L~Ls~n~I~~i~-~l~----~l~~L~~L~Ls~N~---i~~-i~~~~~~~~~L~~L~l~-------~N~i~~l~-~ 110 (198)
T d1m9la_ 48 KACKHLALSTNNIEKIS-SLS----GMENLRILSLGRNL---IKK-IENLDAVADTLEELWIS-------YNQIASLS-G 110 (198)
T ss_dssp TTCCEEECSEEEESCCC-CHH----HHTTCCEEECCEEE---ECS-CSSHHHHHHHCCEEECS-------EEECCCHH-H
T ss_pred cccceeECcccCCCCcc-ccc----CCccccChhhcccc---ccc-ccccccccccccccccc-------cccccccc-c
Confidence 58999999999998764 354 89999999999998 555 55555667789999999 88888874 5
Q ss_pred hhccCcCCEEEccCCCCccccc--hhhhcCCCCCeeecCccccccccccc----------ccCCCCCcEEe
Q 011151 149 IEKLLHLKYLSLCGQREIEKLP--ETLCELYNLERLNITSCNHLRELPQG----------IGKLRKLMYLD 207 (492)
Q Consensus 149 ~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~----------~~~l~~L~~L~ 207 (492)
+..+++|++|++++|. ++.++ ..+..+++|+.|++++|+.....+.. +..+++|+.||
T Consensus 111 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 7889999999999999 77775 35889999999999999843332221 45677777775
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6.1e-09 Score=84.56 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=49.2
Q ss_pred chhhccCCeeeEEecchhhhhhccccccccCc-hhhccCcCCEEEccCCCCccccc-hhhhcCCCCCeeecCcccccccc
Q 011151 116 PQLFDKLTCLRALKLEVRQRWLCKNFIKKIPT-NIEKLLHLKYLSLCGQREIEKLP-ETLCELYNLERLNITSCNHLREL 193 (492)
Q Consensus 116 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~l 193 (492)
|..+..+++|+.|++++ ++.+..++. .|.++++|+.|++++|. +..++ .++..+++|++|++++|. +..+
T Consensus 24 p~~l~~l~~l~~L~l~~------n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l 95 (156)
T d2ifga3 24 LHHLPGAENLTELYIEN------QQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESL 95 (156)
T ss_dssp TTTSCSCSCCSEEECCS------CSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred cccccCccccCeeecCC------CccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC-Cccc
Confidence 33355555666666651 223555543 35556666666666666 55553 335556666666666666 4555
Q ss_pred cccccCCCCCcEEecCCCcc
Q 011151 194 PQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 194 p~~~~~l~~L~~L~l~~~~~ 213 (492)
|..+....+|++|++++|.+
T Consensus 96 ~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 96 SWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CSTTTCSCCCCEEECCSSCC
T ss_pred ChhhhccccccccccCCCcc
Confidence 55444444566666666643
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=8.7e-09 Score=83.62 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=84.4
Q ss_pred EEEEeecCCCcccccccCccCCCCceEEEeccCCccccccccchhhccCCeeeEEecchhhhhhccccccccC-chhhcc
Q 011151 74 LLLTLHRGASVPISIWGNVKGLRGLRSLLVESDDYSWFSEVLPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP-TNIEKL 152 (492)
Q Consensus 74 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~l 152 (492)
+...+++..+.+..+. .+++|+.|.+.++. .++...++.|..+++|+.|+++ ++.+..++ ..|.++
T Consensus 13 l~c~~~~~~~~p~~l~----~l~~l~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~Ls-------~N~l~~i~~~~f~~l 79 (156)
T d2ifga3 13 LRCTRDGALDSLHHLP----GAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIV-------KSGLRFVAPDAFHFT 79 (156)
T ss_dssp EECCSSCCCTTTTTSC----SCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECC-------SSCCCEECTTGGGSC
T ss_pred EEecCCCCccCccccc----CccccCeeecCCCc--cccccCchhhccccccCcceee-------ccccCCccccccccc
Confidence 5556666666666665 88999999997653 2666566779999999999999 99999986 458999
Q ss_pred CcCCEEEccCCCCccccchhhhcCCCCCeeecCcccc
Q 011151 153 LHLKYLSLCGQREIEKLPETLCELYNLERLNITSCNH 189 (492)
Q Consensus 153 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 189 (492)
++|++|+|++|. ++.+|..+....+|+.|++++|++
T Consensus 80 ~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 80 PRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence 999999999999 889988877777899999999984
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2.1e-07 Score=75.73 Aligned_cols=62 Identities=26% Similarity=0.210 Sum_probs=27.8
Q ss_pred hccCcCCEEEccCCCCcccc---chhhhcCCCCCeeecCcccccccccc-cccCCCCCcEEecCCCcc
Q 011151 150 EKLLHLKYLSLCGQREIEKL---PETLCELYNLERLNITSCNHLRELPQ-GIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 150 ~~l~~L~~L~L~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 213 (492)
.++++|++|++++|. ++.+ +..+..+++|+.|++++|. +..++. ...+..+|+.|++++|.+
T Consensus 62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 62 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred HhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCc
Confidence 344555555555555 3332 2224445555555555555 333332 112233455555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=3.7e-06 Score=68.11 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=64.1
Q ss_pred cchhhccCCeeeEEecchhhhhhccccccccC---chhhccCcCCEEEccCCCCccccch-hhhcCCCCCeeecCccccc
Q 011151 115 LPQLFDKLTCLRALKLEVRQRWLCKNFIKKIP---TNIEKLLHLKYLSLCGQREIEKLPE-TLCELYNLERLNITSCNHL 190 (492)
Q Consensus 115 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 190 (492)
++..+..++.|++|+|+ +|.+..++ ..+..+++|++|++++|. ++.++. ...+..+|+.|++++|++.
T Consensus 57 l~~~~~~~~~L~~L~Ls-------~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 57 LRIIEENIPELLSLNLS-------NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHHHCTTCCCCCCC-------SSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hHHHHHhCCCCCEeeCC-------CccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcC
Confidence 45555779999999999 89888764 446789999999999999 887765 2334567999999999854
Q ss_pred ccccc-------cccCCCCCcEEe
Q 011151 191 RELPQ-------GIGKLRKLMYLD 207 (492)
Q Consensus 191 ~~lp~-------~~~~l~~L~~L~ 207 (492)
..... .+..+|+|+.||
T Consensus 129 ~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 129 DTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cCcccchhHHHHHHHHCCCCCEEC
Confidence 43321 245678888875
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.38 E-value=9.8e-05 Score=59.71 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=55.6
Q ss_pred CCCCceEEEeccCCcccccc--ccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCCc
Q 011151 94 GLRGLRSLLVESDDYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQREI 166 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~ 166 (492)
+.+.|+.|+++++......+ .+-.++...+.|+.|+++ ++.++. +...+...+.|++|++++|. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls-------~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i 84 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRVLNVESNF-L 84 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecc-------ccccchhHHHHHhhhhhhcccccceeeehhh-c
Confidence 45667777776532111111 122334555667777776 555432 22334455667777777766 4
Q ss_pred cc-----cchhhhcCCCCCeeecCcccccc-------cccccccCCCCCcEEecCCC
Q 011151 167 EK-----LPETLCELYNLERLNITSCNHLR-------ELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 167 ~~-----lp~~~~~l~~L~~L~l~~~~~~~-------~lp~~~~~l~~L~~L~l~~~ 211 (492)
+. +...+...+.|++|+++++.... .+...+...++|+.|+++.+
T Consensus 85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 31 22334455666666666554111 12233444556666666554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.20 E-value=9.7e-05 Score=59.75 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=61.2
Q ss_pred hccCCeeeEEecchhhhhhcc-ccccc-----cCchhhccCcCCEEEccCCCCcc-----ccchhhhcCCCCCeeecCcc
Q 011151 119 FDKLTCLRALKLEVRQRWLCK-NFIKK-----IPTNIEKLLHLKYLSLCGQREIE-----KLPETLCELYNLERLNITSC 187 (492)
Q Consensus 119 ~~~~~~L~~L~L~~~~~~~~~-~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~ 187 (492)
..+.+.|+.|+|+ + +.++. +-..+...++|++|++++|. ++ .+...+...+.|++|++++|
T Consensus 11 ~~n~~~L~~L~L~-------~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n 82 (167)
T d1pgva_ 11 REDDTDLKEVNIN-------NMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN 82 (167)
T ss_dssp HTTCSSCCEEECT-------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HhCCCCCcEEEeC-------CCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh
Confidence 3567889999998 4 33432 33446667889999999998 54 23344667788999999999
Q ss_pred cccc----cccccccCCCCCcEEecCCCcc
Q 011151 188 NHLR----ELPQGIGKLRKLMYLDNDDTWF 213 (492)
Q Consensus 188 ~~~~----~lp~~~~~l~~L~~L~l~~~~~ 213 (492)
.+.. .+...+...++|++|+++++..
T Consensus 83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 83 FLTPELLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred hcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence 7433 2334567778899999987743
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.64 E-value=0.00092 Score=53.66 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=48.3
Q ss_pred CCCCceEEEeccCCcccccc--ccchhhccCCeeeEEecchhhhhhccccccc-----cCchhhccCcCCEEEccCCCCc
Q 011151 94 GLRGLRSLLVESDDYSWFSE--VLPQLFDKLTCLRALKLEVRQRWLCKNFIKK-----IPTNIEKLLHLKYLSLCGQREI 166 (492)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~ 166 (492)
+.+.|+.|.+.++......+ .+-.++...++|+.|+++ ++.++. +-..+...+.++.+++++|...
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls-------~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeecc-------CCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 44566666665422111111 122233455556666666 444322 2223344555666666655521
Q ss_pred c----ccchhhhcCCCCCeeecC--cccccc----cccccccCCCCCcEEecCCC
Q 011151 167 E----KLPETLCELYNLERLNIT--SCNHLR----ELPQGIGKLRKLMYLDNDDT 211 (492)
Q Consensus 167 ~----~lp~~~~~l~~L~~L~l~--~~~~~~----~lp~~~~~l~~L~~L~l~~~ 211 (492)
. .+...+...+.|+.+++. +|.... .+...+...++|+.|++..+
T Consensus 88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 1 122334445555554443 222111 22333445555555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.49 E-value=0.00046 Score=55.54 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=72.0
Q ss_pred cccccchhhccCCeeeEEecchhhhhhcc-ccccc-----cCchhhccCcCCEEEccCCCCcc-----ccchhhhcCCCC
Q 011151 111 FSEVLPQLFDKLTCLRALKLEVRQRWLCK-NFIKK-----IPTNIEKLLHLKYLSLCGQREIE-----KLPETLCELYNL 179 (492)
Q Consensus 111 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~-----~lp~~~~~l~~L 179 (492)
++..+.....+.+.|+.|+++ + +.++. +-..+...++|+.|++++|. ++ .+...+...+.+
T Consensus 5 i~~~l~~~~~~~~~L~~L~L~-------~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l 76 (166)
T d1io0a_ 5 VEETLKRIQNNDPDLEEVNLN-------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL 76 (166)
T ss_dssp HHHHHHHHHTTCTTCCEEECT-------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCcEEEcC-------CCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccc
Confidence 334445545677889999998 4 33432 33445677889999999998 44 233446678889
Q ss_pred CeeecCcccccc----cccccccCCCCCcEEecCC--Ccccc----cccccccccccccccceE
Q 011151 180 ERLNITSCNHLR----ELPQGIGKLRKLMYLDNDD--TWFLR----YLPVGIGELINLRRVTKF 233 (492)
Q Consensus 180 ~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~--~~~~~----~~~~~l~~l~~L~~L~l~ 233 (492)
+.+++++|.... .+...+...++|+.++++. +.+.. .+...+.+.+.|++|++.
T Consensus 77 ~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 77 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred hhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 999999887432 2334566778888766653 33322 122334556666666554
|