Citrus Sinensis ID: 011155

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKEKELCG
ccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccEEEEccEEccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHcHHcccccccccccccEEEccccccccccccccccccccccccHHHHccccHHHHHHHHHHHccccccccccccccccccccc
ccccccccccccHHHHHHHccccccccccEEEEEEccccHHccHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcEEEccccccccccHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccEEEEEEEcccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccHHccccccccccc
masltppstavqpgrirvlkqgsldkkrgpvvYWMFRDQRVRDNWALIHAVDqanknnvpVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFqgeaednipnFVRECGasllvtdfsplreirRCKDKIcnrvsdsvtihevdahnvvpVWVASEKLEYSAKTLRGKINKLLpeylidypmleqpiekwtgtrqsidWDSIIAAVLRkgaevpeigwcesgeDAAMEVLKgskdgfltkrlknyptdrnnplkpralsglspylhfgqISAQRCALEARKARKLCPEAIDTFLEELIVRRELAdnfcfyqpnydslKGAWEWARKSLKDHASDKREHIYTKEQfekaqtadplwnasQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNdkyeidgrdpngyvgcmwsicgvhdqgwkerpvfgkirymnysgckrkfdvdGYIAYVKRIVGGtkkrradslvsgkekelcg
masltppstavqpgrirvlkqgsldkkrgpvvYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASllvtdfsplreirrCKDKICNRVSdsvtihevdahnvvpVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLknyptdrnnplkpRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIytkeqfekaqtadplwnaSQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSgckrkfdvdGYIAYVKrivggtkkrradslvsgkekelcg
MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKEKELCG
**************************KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK****GFLT******************LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL**********IY*********TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGG*******************
**************************K**PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK****R**IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGG*******************
***********QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGT******************
**********VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKK****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRADSLVSGKEKELCG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query492 2.2.26 [Sep-21-2011]
Q9SB00496 Deoxyribodipyrimidine pho yes no 0.955 0.947 0.768 0.0
Q6F6A2506 Deoxyribodipyrimidine pho yes no 0.965 0.938 0.637 1e-176
P34205556 Deoxyribodipyrimidine pho N/A no 0.871 0.771 0.504 1e-129
Q28811532 Deoxyribodipyrimidine pho N/A no 0.884 0.817 0.505 1e-126
P58818444 Deoxyribodipyrimidine pho yes no 0.849 0.941 0.387 2e-81
P12769445 Deoxyribodipyrimidine pho yes no 0.876 0.968 0.396 6e-80
P05327484 Deoxyribodipyrimidine pho yes no 0.790 0.803 0.222 2e-05
>sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1 PE=2 SV=1 Back     alignment and function desciption
 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/476 (76%), Positives = 418/476 (87%), Gaps = 6/476 (1%)

Query: 8   STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
           + +VQPGRIR+LK+GS   LD+  GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV 
Sbjct: 4   TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63

Query: 65  FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
           FNLFDQFL AKARQLGFML+GLR L   I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64  FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122

Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
           VTDFSPLREIRRCKD++  R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182

Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
           P+YLI++P LE P +KWTG   ++ +DWDS+I  V+R+GAEVPEI WC  GEDA +EVL 
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242

Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
           G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R   P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302

Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
           TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK  TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362

Query: 363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
           DPLWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct: 363 DPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422

Query: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
           VGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V  TKK+R
Sbjct: 423 VGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKR 478
Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutylpyrimidine dimers (CPDs), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. Required for plant survival in the presence of UV-B light. Not involved in the repair of (6-4) photoproducts.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 3
>sp|Q6F6A2|PHR_ORYSJ Deoxyribodipyrimidine photo-lyase OS=Oryza sativa subsp. japonica GN=PHR PE=1 SV=1 Back     alignment and function description
>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr PE=2 SV=1 Back     alignment and function description
>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous tridactylus GN=PHR PE=2 SV=1 Back     alignment and function description
>sp|P58818|PHR_METTM Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=phr PE=1 SV=2 Back     alignment and function description
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=phr PE=3 SV=2 Back     alignment and function description
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query492
224124936503 predicted protein [Populus trichocarpa] 0.995 0.974 0.796 0.0
225470301485 PREDICTED: deoxyribodipyrimidine photo-l 0.975 0.989 0.809 0.0
255537109489 DNA photolyase, putative [Ricinus commun 0.989 0.995 0.792 0.0
147862663514 hypothetical protein VITISV_026088 [Viti 0.993 0.951 0.759 0.0
449459676489 PREDICTED: deoxyribodipyrimidine photo-l 0.971 0.977 0.781 0.0
30682738496 photolyase 1 [Arabidopsis thaliana] gi|7 0.955 0.947 0.768 0.0
296082842543 unnamed protein product [Vitis vinifera] 0.971 0.880 0.724 0.0
1617219496 CPD photolyase [Arabidopsis thaliana] gi 0.955 0.947 0.762 0.0
30421116491 CPD photolyase [Spinacia oleracea] gi|30 0.989 0.991 0.750 0.0
297849606496 hypothetical protein ARALYDRAFT_471385 [ 0.955 0.947 0.762 0.0
>gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa] gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/501 (79%), Positives = 441/501 (88%), Gaps = 11/501 (2%)

Query: 1   MASLTPP---STAVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANK 56
           MASL+ P   +T VQPGRIRV+K+GS  +   GPVVYWMFRDQR++DNWALIHAVDQAN+
Sbjct: 1   MASLSSPPTQNTIVQPGRIRVIKEGSRGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANR 60

Query: 57  NNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
           +NVPVAVAFNLFDQFLGAKARQLGFMLRGL  LQ +IEET QI FFLF GEAE+ IP F+
Sbjct: 61  SNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQSHIEETLQIPFFLFLGEAEETIPAFL 120

Query: 117 RECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
           ++CGASLLVTDFSPLR+ R C+D+IC RVSDSVTIHEVDAHNVVP+WVASEKLEYSA+TL
Sbjct: 121 KDCGASLLVTDFSPLRQFRTCQDEICKRVSDSVTIHEVDAHNVVPIWVASEKLEYSARTL 180

Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGED 235
           RGKINKLLPEYLID+PML+ P  KW   T+QSIDW+ +I  VLRKGAEVPEI WCE GED
Sbjct: 181 RGKINKLLPEYLIDFPMLQLPKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGED 240

Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
           AAMEVL GSKDGFLT+RLKNY TDRNNPLKP+ LSGLSPYLHFGQISAQRCALEARK R 
Sbjct: 241 AAMEVLMGSKDGFLTQRLKNYSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARKVRN 300

Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
           L P++ D FLEELIVRRELADNFCFYQPNYDS+ GAWEWARK+L DHASDKREHIY+KEQ
Sbjct: 301 LSPQSADAFLEELIVRRELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQ 360

Query: 356 FEKAQTADPLWNASQMEMVYNGKMHGFMR------MYWAKKILEWTTGPEEALAIAIYLN 409
            EKAQTADPLWNASQ+EMV +GKMHGFMR      MYWAKKILEWT GPEEALAI+IYLN
Sbjct: 361 LEKAQTADPLWNASQLEMVCHGKMHGFMRQKTLCSMYWAKKILEWTRGPEEALAISIYLN 420

Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
           DKYEIDGRDP GYVGCMWSICG+HDQGWKERP+FGKIRYMNY+GCKRKF+VDGYI YVKR
Sbjct: 421 DKYEIDGRDPGGYVGCMWSICGIHDQGWKERPIFGKIRYMNYAGCKRKFNVDGYITYVKR 480

Query: 470 IVGGTKKRRADSLVSGKEKEL 490
           IVG  KKR+A++ +    KEL
Sbjct: 481 IVGDMKKRKAENELHKTMKEL 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225470301|ref|XP_002266483.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis] gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459676|ref|XP_004147572.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus] gi|449517475|ref|XP_004165771.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus] gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus] gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus] Back     alignment and taxonomy information
>gi|30682738|ref|NP_849651.1| photolyase 1 [Arabidopsis thaliana] gi|75201504|sp|Q9SB00.1|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=AtCPDII; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme 1; AltName: Full=Protein UV RESISTANCE 2 gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana] gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana] gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea] gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea] Back     alignment and taxonomy information
>gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp. lyrata] gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query492
TAIR|locus:2034675496 PHR1 "photolyase 1" [Arabidops 0.955 0.947 0.768 2.5e-207
UNIPROTKB|Q6F6A2506 PHR "Deoxyribodipyrimidine pho 0.953 0.926 0.658 1.6e-173
UNIPROTKB|F1NSZ2487 LOC424919 "Uncharacterized pro 0.896 0.905 0.523 7e-125
ZFIN|ZDB-GENE-040426-1644516 zgc:66475 "zgc:66475" [Danio r 0.896 0.854 0.486 6e-119
FB|FBgn0003082640 phr "photorepair" [Drosophila 0.918 0.706 0.498 1.9e-115
TIGR_CMR|GSU_2829461 GSU_2829 "deoxyribodipyrimidin 0.902 0.963 0.494 9.7e-112
FB|FBgn0042173330 CG18853 [Drosophila melanogast 0.327 0.487 0.634 2.8e-57
TIGR_CMR|CBU_1176472 CBU_1176 "deoxyribodipyrimidin 0.420 0.438 0.297 2.1e-07
TIGR_CMR|SPO_1917481 SPO_1917 "deoxyribodipyrimidin 0.386 0.395 0.272 2.3e-07
TIGR_CMR|BA_3180476 BA_3180 "deoxyribodipyrimidine 0.813 0.840 0.229 9.6e-05
TAIR|locus:2034675 PHR1 "photolyase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2005 (710.9 bits), Expect = 2.5e-207, P = 2.5e-207
 Identities = 366/476 (76%), Positives = 418/476 (87%)

Query:     8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
             + +VQPGRIR+LK+GS   LD+  GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV 
Sbjct:     4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63

Query:    65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
             FNLFDQFL AKARQLGFML+GLR L   I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct:    64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122

Query:   125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
             VTDFSPLREIRRCKD++  R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct:   123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182

Query:   185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
             P+YLI++P LE P +KWTG   ++ +DWDS+I  V+R+GAEVPEI WC  GEDA +EVL 
Sbjct:   183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242

Query:   243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
             G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R   P+A+D
Sbjct:   243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302

Query:   303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
             TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK  TA
Sbjct:   303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362

Query:   363 DPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGY 422
             DPLWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYEIDGRDP+GY
Sbjct:   363 DPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGY 422

Query:   423 VGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRR 478
             VGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V  TKK+R
Sbjct:   423 VGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKR 478
GO:0003904 "deoxyribodipyrimidine photo-lyase activity" evidence=IEA
GO:0003913 "DNA photolyase activity" evidence=IEA;IDA
GO:0006281 "DNA repair" evidence=IEA
GO:0009650 "UV protection" evidence=IMP
GO:0000719 "photoreactive repair" evidence=IMP
UNIPROTKB|Q6F6A2 PHR "Deoxyribodipyrimidine photo-lyase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSZ2 LOC424919 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1644 zgc:66475 "zgc:66475" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0003082 phr "photorepair" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2829 GSU_2829 "deoxyribodipyrimidine photolyase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
FB|FBgn0042173 CG18853 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1176 CBU_1176 "deoxyribodipyrimidine photolyase - class I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1917 SPO_1917 "deoxyribodipyrimidine photolyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3180 BA_3180 "deoxyribodipyrimidine photolyase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6F6A2PHR_ORYSJ4, ., 1, ., 9, 9, ., 30.63740.96540.9387yesno
Q28811PHR_POTTR4, ., 1, ., 9, 9, ., 30.50550.88410.8176N/Ano
Q9SB00PHR_ARATH4, ., 1, ., 9, 9, ., 30.76890.95520.9475yesno
P58818PHR_METTM4, ., 1, ., 9, 9, ., 30.38710.84950.9414yesno
P12769PHR_METTH4, ., 1, ., 9, 9, ., 30.39610.87600.9685yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.99.30.914
3rd Layer4.1.990.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
TIGR00591454 TIGR00591, phr2, photolyase PhrII 0.0
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 4e-63
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 5e-58
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 3e-30
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 2e-04
>gnl|CDD|129679 TIGR00591, phr2, photolyase PhrII Back     alignment and domain information 
 Score =  590 bits (1524), Expect = 0.0
 Identities = 242/459 (52%), Positives = 304/459 (66%), Gaps = 9/459 (1%)

Query: 11  VQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
               R R+L +      R  G VVYWM RDQRV+DNWALI A   A K  +P+ V F L 
Sbjct: 3   FAKKRRRLLSETEKPDLRSSGVVVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLV 62

Query: 69  DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
           D FL A  R   FML GL  +  N  E   I F L  G  ++ +P FV    A+ +VTDF
Sbjct: 63  DFFLAATRRHYFFMLGGLDEVA-NECERLIIPFHLLDGPPKELLPYFVDLHAAAAVVTDF 121

Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
           SPLR+  +  + +   +   V   +VDAHNVVP W AS+KLEY+A+T+RGKI KLLPEYL
Sbjct: 122 SPLRQPEQWDEAVGKLLPKDVPFQQVDAHNVVPCWAASKKLEYAARTIRGKIRKLLPEYL 181

Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
            ++P + +           +DWD++  ++  +   V E+ W + G  A + +L+     F
Sbjct: 182 TEFPRVLKHPSPLDLEAGPVDWDAVRDSLAVE-RSVEEVVWAKPGTTAGLIMLES----F 236

Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
           + KRL  + T RN+P    ALS LSP+LHFGQ+SAQR A    +AR    E+++ F EEL
Sbjct: 237 IEKRLCFFRTRRNDP-NNDALSMLSPWLHFGQLSAQRAARAVERARGNAGESVEFFEEEL 295

Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNA 368
           +VRRELADNFCFY P YDSL GA+ WAR +L DHA DKREH+Y+ EQ EK+ T D LWNA
Sbjct: 296 VVRRELADNFCFYNPYYDSLCGAYWWARTTLDDHAKDKREHLYSLEQLEKSTTHDYLWNA 355

Query: 369 SQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWS 428
           +Q ++V  GKMHGF+RMYWAKKILEWT  PEEAL+IAIYLNDKY +DGRDPNGYVGCMWS
Sbjct: 356 AQEQLVTEGKMHGFLRMYWAKKILEWTHSPEEALSIAIYLNDKYILDGRDPNGYVGCMWS 415

Query: 429 ICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV 467
           ICG+HDQGW ER VFGKIRYMNY+GC+RKF+V  +    
Sbjct: 416 ICGIHDQGWAERIVFGKIRYMNYAGCRRKFNVAYFERKY 454

All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 454
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 492
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 100.0
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 99.97
COG3046505 Uncharacterized protein related to deoxyribodipyri 99.97
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 98.87
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 97.83
PRK09982142 universal stress protein UspD; Provisional 92.11
PRK15005144 universal stress protein F; Provisional 90.23
PRK12652357 putative monovalent cation/H+ antiporter subunit E 89.82
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 89.79
cd00293130 USP_Like Usp: Universal stress protein family. The 89.3
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 88.97
cd01987124 USP_OKCHK USP domain is located between the N-term 88.59
PRK10116142 universal stress protein UspC; Provisional 86.87
PRK15456142 universal stress protein UspG; Provisional 84.36
PF00582140 Usp: Universal stress protein family; InterPro: IP 81.88
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 80.07
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information 
Probab=100.00  E-value=9.7e-104  Score=833.96  Aligned_cols=449  Identities=53%  Similarity=0.906  Sum_probs=378.6

Q ss_pred             cccccccccccCc-CCCCC-CcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCCccccchhHHHHHHHHHHH
Q 011155           11 VQPGRIRVLKQGS-LDKKR-GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL   88 (492)
Q Consensus        11 ~~~~r~~~~~~~~-~~~~~-~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~esL~~   88 (492)
                      +++.||+-+++.+ +...+ ..+|||||||||++||+||++|++.|.+.+.+|+||||+||.+...+.+|.+||++||.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~   82 (454)
T TIGR00591         3 FAKKRRRLLSETEKPDLRSSGVVVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAATRRHYFFMLGGLDE   82 (454)
T ss_pred             CCchheeeccCCCCccCCCCCeEEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccccHHHHHHHHHHHHH
Confidence            7899999999965 54444 449999999999999999999998666667799999999999887899999999999999


Q ss_pred             HHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHhcCCCeEEEEeCceeEeCcccccC
Q 011155           89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEK  168 (492)
Q Consensus        89 L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l~~~v~~~~~~~~~l~~~~~~~~~  168 (492)
                      |+++| +++|++|+|+.|++.++|.+|+++++|++||++.++...++++|+.|++.|+.+|.++++++++|++++.+.++
T Consensus        83 L~~~L-~~~g~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~l~~~i~~~~~~~~~l~p~~~~~~~  161 (454)
T TIGR00591        83 VANEC-ERLIIPFHLLDGPPKELLPYFVDLHAAAAVVTDFSPLRQPEQWDEAVGKLLPKDVPFQQVDAHNVVPCWAASKK  161 (454)
T ss_pred             HHHHH-HHcCCceEEeecChHHHHHHHHHHcCCCEEEEecccCcHHHHHHHHHHHHhcCCCcEEEECCceEeeCcccCCc
Confidence            99999 99999999999999999999999999999999888877789999999999966899999999999999877667


Q ss_pred             CCCccccchHHHHhhCCccccCCCCCcCCCCcCCCCCCCCChhHHHHHHhhcCCCCCCcCcC-CCcHHHHHHHHccchhH
Q 011155          169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWC-ESGEDAAMEVLKGSKDG  247 (492)
Q Consensus       169 ~~~~~~t~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gGe~~A~~~L~~~~~~  247 (492)
                      .+|++|||+++..+.++..+.+.+...+.+.|....+...++..++..+ .+..++.. ..+ +|||++|+++|    ++
T Consensus       162 ~~y~~ft~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~gGe~aA~~~L----~~  235 (454)
T TIGR00591       162 LEYAARTIRGKIRKLLPEYLTEFPRVLKHPSPLDLEAGPVDWDAVRDSL-AVERSVEE-VVWAKPGTTAGLIML----ES  235 (454)
T ss_pred             eeeeeecHHHHHHHhChhhccccCCCccCCcccccccCcCCHHHHHHhc-cCcCCcCC-cCCCCCcHHHHHHHH----HH
Confidence            8999999998776554332222222100011110001112222211111 11112211 125 99999999999    99


Q ss_pred             HHHhhhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhhCCccHHHHHHHhHhHHHHHHHHHHhCCCCcc
Q 011155          248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS  327 (492)
Q Consensus       248 Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~  327 (492)
                      |+++++.+|.++||.|+. ++||+|||||+||+||||+|++++.+......++.+.|++||+||||||+++++++|++.+
T Consensus       236 F~~~~l~~Y~~~Rn~p~~-~~tS~LSPyL~~G~IS~R~i~~~~~~~~~~~~~~~~~fl~EL~WR~ef~~~~~~~~p~~~~  314 (454)
T TIGR00591       236 FIEKRLCFFRTRRNDPNN-DALSMLSPWLHFGQLSAQRAARAVERARGNAGESVEFFEEELVVRRELADNFCFYNPYYDS  314 (454)
T ss_pred             HHHHHHHHHHHhcCCccc-ccccccchHHhcCcccHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHhhhcCCCccc
Confidence            999999999999999999 9999999999999999999999986544322345678999999998999999999999988


Q ss_pred             cccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHhcCccCCCccHHHHHHHHHH
Q 011155          328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIY  407 (492)
Q Consensus       328 ~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~vak~LidW~~G~~~a~~~~~~  407 (492)
                      +.....|..+++.+|+.|.+++.+.|++|++|+|||||||||||||++|||||||+||+|||+||||+.|+++|+..++|
T Consensus       315 ~~~~~~w~~~~l~~~~~d~r~~~~~~~~W~~G~Tg~pivdA~MrqL~~TG~MHNr~RMi~aK~li~W~~g~~~f~~~~~~  394 (454)
T TIGR00591       315 LCGAYWWARTTLDDHAKDKREHLYSLEQLEKSTTHDYLWNAAQEQLVTEGKMHGFLRMYWAKKILEWTHSPEEALSIAIY  394 (454)
T ss_pred             cccchHHHHHHHHHHhcCCccccCCHHHHHhcCcCcHhHhHHHHHHHHhCccccceeeeeeeehhhcCCCHHHHHHHHHH
Confidence            66667799889988877765555579999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccccCCCCCCCcCceEeecccCCCCCCCCCCcCcccccCcchhhhcCCchhHHHhh
Q 011155          408 LNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYV  467 (492)
Q Consensus       408 f~~~yliD~d~a~n~~~wqw~a~G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~yir~w  467 (492)
                      ++++||||||+|||+|||||++||+|+++|.++|+||+||+|||.+|++||||++|||+|
T Consensus       395 ln~~~lvDgd~a~n~~~wqW~~~G~d~~p~~~~~~fg~iR~~np~~q~~kfd~~~yi~~~  454 (454)
T TIGR00591       395 LNDKYILDGRDPNGYVGCMWSICGIHDQGWAERIVFGKIRYMNYAGCRRKFNVAYFERKY  454 (454)
T ss_pred             hhhhhhccCCCCCccceeeeEeccccCCCCCCCccceeeeecChhhhhccCCHHHHHhhC
Confidence            999999999999999999999559999999999999999999999999999999999998

All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
3umv_A506 Eukaryotic Class Ii Cpd Photolyase Structure Reveal 1e-177
2xry_A482 X-Ray Structure Of Archaeal Class Ii Cpd Photolyase 1e-115
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 1e-07
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 2e-07
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 1e-05
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 5e-05
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 6e-05
>pdb|3UMV|A Chain A, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A Basis For Improved Uv-Tolerance In Plants Length = 506 Back     alignment and structure 
Iteration: 1

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 312/491 (63%), Positives = 371/491 (75%), Gaps = 16/491 (3%)
Query: 3   SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
           S++PP TA          P R+RV+  G        VVYWM RDQR+ DNWAL+HA   A
Sbjct: 5   SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55  NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
             +  P+AVAF LF +   L A+ RQLGF+LRGLR L  +        F    G AE  I
Sbjct: 64  AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
           P  V+  GAS LV DFSPLR +R   D +     R +  V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
           EYSAKT RGK++K++ EYL+++P L   +       + +DWD++IA V  +   VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
           CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
           A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
           IYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLN
Sbjct: 362 IYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLN 421
Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
           DKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR
Sbjct: 422 DKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481
Query: 470 IVGGTKKRRAD 480
           + G +KKR A+
Sbjct: 482 LAGQSKKRNAE 492
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From Methanosarcina Mazei Length = 482 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query492
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 0.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 0.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 3e-27
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 2e-25
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 3e-23
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 2e-22
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 2e-21
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 5e-21
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 5e-21
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 1e-20
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 3e-17
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
 Score =  582 bits (1501), Expect = 0.0
 Identities = 311/475 (65%), Positives = 370/475 (77%), Gaps = 8/475 (1%)

Query: 11  VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
             P R+RV+  G   K  GPVVYWM RDQR+ DNWAL+HA   A  +  P+AVAF LF +
Sbjct: 21  AHPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPR 79

Query: 71  --FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
              L A+ RQLGF+LRGLR L  +      + FFLF G   + IP  V+  GAS LV DF
Sbjct: 80  PFLLSARRRQLGFLLRGLRRLAADAAA-RHLPFFLFTGGPAE-IPALVQRLGASTLVADF 137

Query: 129 SPLREIRRCKDKI---CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
           SPLR +R   D +     R +  V +H+VDAHNVVPVW AS K+EYSAKT RGK++K++ 
Sbjct: 138 SPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKVMD 197

Query: 186 EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
           EYL+++P L   +       + +DWD++IA V  +   VPEI WCE GE+AA+E L GSK
Sbjct: 198 EYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSK 257

Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
           DGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALEA+K R L P+++D FL
Sbjct: 258 DGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKSVDAFL 317

Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPL 365
           EEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREHIYT+EQ E A+T DPL
Sbjct: 318 EELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPL 377

Query: 366 WNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGC 425
           WNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEEAL+ AIYLNDKYEIDGRDP+GYVGC
Sbjct: 378 WNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGC 437

Query: 426 MWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGGTKKRRAD 480
           MWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDVD YI+YVKR+ G +KKR A+
Sbjct: 438 MWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAE 492
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query492
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
3s3t_A146 Nucleotide-binding protein, universal stress PROT 92.65
3dlo_A155 Universal stress protein; unknown function, struct 92.41
3fdx_A143 Putative filament protein / universal stress PROT; 91.78
3fg9_A156 Protein of universal stress protein USPA family; A 91.7
3tnj_A150 Universal stress protein (USP); structural genomic 91.42
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 90.52
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 90.32
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 87.78
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 87.6
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 87.29
2z08_A137 Universal stress protein family; uncharacterized c 84.03
3olq_A319 Universal stress protein E; structural genomics, P 82.81
3mt0_A290 Uncharacterized protein PA1789; structural genomic 80.21
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
Probab=100.00  E-value=2.7e-112  Score=902.30  Aligned_cols=471  Identities=64%  Similarity=1.157  Sum_probs=404.5

Q ss_pred             CccccccccccccCcCCCCCCcEEEEEeCCCCccCCHHHHHHHHHhhhCCCCEEEEEEecCC--ccccchhHHHHHHHHH
Q 011155            9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGL   86 (492)
Q Consensus         9 ~~~~~~r~~~~~~~~~~~~~~~~l~WfRrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~--~~~~~~~r~~Fl~esL   86 (492)
                      ..++++|||++|+.+ .+.++.+||||||||||+||+||++|++.|.+.+.+|+||||+||.  +...+.+|++||++||
T Consensus        19 ~~~~~~r~~~l~~~~-~~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL   97 (506)
T 3umv_A           19 SPAHPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGL   97 (506)
T ss_dssp             CCSCGGGEEEEECCC-SCTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHH
T ss_pred             cccCHhHhhhhccCC-CCCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHH
Confidence            458999999999986 5567889999999999999999999998877667899999999998  4577899999999999


Q ss_pred             HHHHHHHHhhcCCcEEEEeCChhchHHHHHHHhCCCEEEEcCCcChHHHHHHHHHHHHh---cCCCeEEEEeCceeEeCc
Q 011155           87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV---SDSVTIHEVDAHNVVPVW  163 (492)
Q Consensus        87 ~~L~~~L~~~lG~~L~v~~G~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~~d~~v~~~l---~~~v~~~~~~~~~l~~~~  163 (492)
                      ++|+++| +++|++|+|+.|++.++ ++|+++++|++|++|++|...+++||++|+++|   +.||.++++++++|++++
T Consensus        98 ~dL~~~L-~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~  175 (506)
T 3umv_A           98 RRLAADA-AARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVW  175 (506)
T ss_dssp             HHHHHHH-HHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHH
T ss_pred             HHHHHHH-HHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcc
Confidence            9999999 99999999999999999 999999999999999999998888999999987   479999999999999999


Q ss_pred             ccccCCCCccccchHHHHhhCCccccCCCCCcCCCCcCCC-CCCCCChhHHHHHHhhcCCCCCCcCcCCCcHHHHHHHHc
Q 011155          164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK  242 (492)
Q Consensus       164 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~  242 (492)
                      .+.++.+|.++||++++.+.+..++.+.|.. +...+... .+..+++..+.+.+...+..++...+++|||++|+++|+
T Consensus       176 ~v~~~~~~~~~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~  254 (506)
T 3umv_A          176 TASAKMEYSAKTFRGKVSKVMDEYLVEFPEL-PAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALL  254 (506)
T ss_dssp             HHCSSCCSSHHHHHHHHHTTHHHHSCCCCCC-CCCCCCCSCCCCCCCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHH
T ss_pred             cccCCCCCCccCHHHHHHHhccccccCCCCC-CCccccccccccccChhhhhhhhccccccccccCCCCCCHHHHHHHHH
Confidence            8878888999999988887766555554442 11111111 122345544433221233344433457899999999998


Q ss_pred             cchhHHHHhhhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhhCCccHHHHHHHhHhHHHHHHHHHHhC
Q 011155          243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ  322 (492)
Q Consensus       243 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~  322 (492)
                      |++++|+++++.+|+.+||.|+..++||+|||||+||+||||+|++++.++.....++.++|++||+|||||++++++++
T Consensus       255 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~~~~~~~f~~eL~WRREf~~~~~~~~  334 (506)
T 3umv_A          255 GSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQ  334 (506)
T ss_dssp             CTTTCHHHHTGGGHHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGSHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHhHHhhhccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhccccHHHHHHHHHHhHHHHHHHHHhC
Confidence            88889999999999999999975579999999999999999999999987765455678999999999889999999999


Q ss_pred             CCCcccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccchHHHHHHhcCccCCCccHHHHH
Q 011155          323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEAL  402 (492)
Q Consensus       323 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~vak~LidW~~G~~~a~  402 (492)
                      |+|+.+.+.++|..+++.+|..|.+++.+.|++|++|+|||||||||||||++|||||||+||+|||+||+|+.|+++|+
T Consensus       335 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~ak~ll~W~~g~~~~~  414 (506)
T 3umv_A          335 PQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEAL  414 (506)
T ss_dssp             TTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSSSHHHHH
T ss_pred             cchhhhhccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHHHhhccCCCCHHHHH
Confidence            99988777789998888877666554444699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCcCceEeecccCCCCCCCCCCcCcccccCcchhhhcCCchh---HHHhhhhhhcCCCcccc
Q 011155          403 AIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG---YIAYVKRIVGGTKKRRA  479 (492)
Q Consensus       403 ~~~~~f~~~yliD~d~a~n~~~wqw~a~G~~~~g~~~~pyfg~~R~~np~~q~~k~Dp~~---yir~wvPeL~~~~~~~~  479 (492)
                      ++++||+++||||||+||||+||||++||++++||+++||||+||+|||++|++||||+|   |||+|||||+++|.+..
T Consensus       415 ~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~~~~~~  494 (506)
T 3umv_A          415 STAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEES  494 (506)
T ss_dssp             HHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCCCcccc
Confidence            999999998899999999999999999999999999999999999999999999999987   99999999999999976


Q ss_pred             cccc
Q 011155          480 DSLV  483 (492)
Q Consensus       480 ~~~~  483 (492)
                      .+..
T Consensus       495 ~~~~  498 (506)
T 3umv_A          495 PNPV  498 (506)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6544
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 492
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 2e-22
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 1e-20
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 7e-18
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 2e-16
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 1e-14
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 3e-07
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 5e-05
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 3e-04
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 5e-04
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 5e-04
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: C-terminal domain of DNA photolyase
species: Synechococcus elongatus [TaxId: 32046]

 Score = 94.7 bits (234), Expect = 2e-22
 Identities = 49/242 (20%), Positives = 82/242 (33%), Gaps = 21/242 (8%)

Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
            E GE AA+  L      F  + + +Y   RN P +    SGLSP L FG I  ++    
Sbjct: 2   VEPGETAAIARL----QEFCDRAIADYDPQRNFPAEA-GTSGLSPALKFGAIGIRQAWQA 56

Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
           A  A      + +      + ++ELA    +    Y     A    R   +    + RE 
Sbjct: 57  ASAAHA-LSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREA 115

Query: 350 IYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLN 409
           ++T     +     P+ +A+  ++   G MH   RM  A  + +                
Sbjct: 116 LFTAWTQAQTG--YPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWR---RGEQFF 170

Query: 410 DKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKR 469
            ++ +DG       G  WS     D                ++   +    D    Y+KR
Sbjct: 171 MQHLVDGDLAANNGGWQWSASSGMDPKP----------LRIFNPASQAKKFDATATYIKR 220

Query: 470 IV 471
            +
Sbjct: 221 WL 222
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query492
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 99.98
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 99.97
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 99.97
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 99.96
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 99.96
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 92.46
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 91.6
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 88.67
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 85.59
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 82.67
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 82.17
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.3e-65  Score=506.19  Aligned_cols=227  Identities=22%  Similarity=0.231  Sum_probs=194.2

Q ss_pred             cCCCcHHHHHHHHccchhHHHHhhhcCCCCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHHhhh--------CCcc
Q 011155          229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--------CPEA  300 (492)
Q Consensus       229 ~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~--------~~~~  300 (492)
                      .|++||.+|+++|    ++||++++.+|..+||.|+. ++||+|||||+|||||||+|++.+......        ...+
T Consensus        15 ~W~pGe~~A~~~L----~~Fl~~~l~~Y~~~Rn~p~~-~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~~~~~~   89 (300)
T d1u3da1          15 AWSPGWSNGDKAL----TTFINGPLLEYSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEES   89 (300)
T ss_dssp             HCCCSHHHHHHHH----HHHHTTGGGGTTTTTTCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCccHHHHHHHH----HHHHHhhHHHHhhhcCCCCc-cCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhcccccccc
Confidence            3689999999999    99999999999999999988 899999999999999999999998654311        1234


Q ss_pred             HHHHHHHhHhHHHHHHHHHHhCCCCcccccchhHHHHhhhhhccChhhhhhhHHHHHhCCCCchHHHHHHHHHHHhCccc
Q 011155          301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH  380 (492)
Q Consensus       301 ~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mh  380 (492)
                      ++.|++||+|| ||++++++++|..........+..   .....|+    ..+++|++|+||+||||||||||++|||||
T Consensus        90 ~~~fi~eL~wR-ef~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~----~~~~~w~~G~TG~p~vDA~mr~L~~tG~mh  161 (300)
T d1u3da1          90 VNLFLKSIGLR-EYSRYISFNHPYSHERPLLGHLKF---FPWAVDE----NYFKAWRQGRTGYPLVDAGMRELWATGWLH  161 (300)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHSSTTTTTSCSCCTTTT---CCCCCCH----HHHHHHHHTCSSCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHH-HHHHHHHHhhhhhhhcchhhhhhc---cccccCH----HHHHHHHhhcccchHHHHHHHHHHhhchhH
Confidence            57899999998 999999988876543211111110   0011233    258999999999999999999999999999


Q ss_pred             hHHHHHHh----cCc-cCCCccHHHHHHHHHHHhhhccccCCCCCCCcCceEeec-ccCCCCCCCCCCcCcccccCcchh
Q 011155          381 GFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGC  454 (492)
Q Consensus       381 nr~Rm~va----k~L-idW~~G~~~a~~~~~~f~~~yliD~d~a~n~~~wqw~a~-G~~~~g~~~~pyfg~~R~~np~~q  454 (492)
                      ||+|||||    ++| +||+.|+.       ||+++ |||||+++|++||||+|| |++.     +|||   |||||++|
T Consensus       162 nr~Rm~vaSfl~~~L~i~W~~ga~-------~f~~~-l~D~d~a~n~~~wq~~ag~g~~~-----~~~~---ri~np~~q  225 (300)
T d1u3da1         162 DRIRVVVSSFFVKVLQLPWRWGMK-------YFWDT-LLDADLESDALGWQYITGTLPDS-----REFD---RIDNPQFE  225 (300)
T ss_dssp             HHHHHHHHHHHHHTSCCCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHHTCSTTC-----CCSS---CCCCHHHH
T ss_pred             HHHHHHHHHHHHHHcccchhhHHH-------HHHHH-HhccchhhHHHHHHHHHhcccch-----hhcc---ccccHHHH
Confidence            99999998    788 99999999       99999 899999999999999985 6665     5888   99999999


Q ss_pred             hhcCCchh-HHHhhhhhhcCCCccccccccc
Q 011155          455 KRKFDVDG-YIAYVKRIVGGTKKRRADSLVS  484 (492)
Q Consensus       455 ~~k~Dp~~-yir~wvPeL~~~~~~~~~~~~~  484 (492)
                      +++|||+| |||+|||||++||.+.+|.||.
T Consensus       226 ~~~~Dp~g~fir~wvPEL~~~p~~~ih~Pw~  256 (300)
T d1u3da1         226 GYKFDPNGEYVRRWLPELSRLPTDWIHHPWN  256 (300)
T ss_dssp             HHHHCTTSHHHHHHCGGGTTCCHHHHTCTTT
T ss_pred             HHHhcCcchHHHHhChhhhcCCHHHhCCccc
Confidence            99999998 9999999999999999999994
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure