Citrus Sinensis ID: 011170
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GW72 | 506 | Alpha-L-fucosidase 1 OS=A | yes | no | 0.918 | 0.893 | 0.520 | 1e-141 | |
| Q7XUR3 | 517 | Putative alpha-L-fucosida | no | no | 0.884 | 0.841 | 0.530 | 1e-130 | |
| Q6AYS4 | 459 | Plasma alpha-L-fucosidase | yes | no | 0.489 | 0.525 | 0.259 | 6e-09 | |
| P10901 | 461 | Alpha-L-fucosidase OS=Dic | yes | no | 0.473 | 0.505 | 0.254 | 2e-08 | |
| P49713 | 482 | Putative alpha-L-fucosida | yes | no | 0.524 | 0.535 | 0.23 | 2e-08 | |
| Q99KR8 | 461 | Plasma alpha-L-fucosidase | yes | no | 0.550 | 0.587 | 0.270 | 6e-08 | |
| Q9BTY2 | 467 | Plasma alpha-L-fucosidase | yes | no | 0.538 | 0.567 | 0.234 | 2e-07 | |
| Q5RFI5 | 465 | Plasma alpha-L-fucosidase | yes | no | 0.516 | 0.546 | 0.257 | 3e-07 | |
| C3YWU0 | 449 | Alpha-L-fucosidase OS=Bra | yes | no | 0.475 | 0.521 | 0.258 | 4e-07 | |
| Q9VTJ4 | 494 | Putative alpha-L-fucosida | yes | no | 0.313 | 0.311 | 0.27 | 2e-06 |
| >sp|Q8GW72|FUCO1_ARATH Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/465 (52%), Positives = 323/465 (69%), Gaps = 13/465 (2%)
Query: 32 PLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTA 91
P P+ PLPS QL+WQ + MFLHFG NTFTDSEWGTG NP IFNP L+A+QWV A
Sbjct: 31 PCPILPLPSSQQLQWQLGSMAMFLHFGPNTFTDSEWGTGKANPSIFNPTHLNASQWVQIA 90
Query: 92 AEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151
++G S +ILTAKHHDGFCLWPS++T++SV S W++G GDVV EL +AAK G+ +GLY
Sbjct: 91 KDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAELASAAKEAGIGLGLY 150
Query: 152 LSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFA 211
LSPWDRH+ YG L+YNE+YL+Q+ ELLT+YG+++E+W DGAKG +M Y+F WF+
Sbjct: 151 LSPWDRHEQCYGKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDTWFS 210
Query: 212 MVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKG 271
++ +LQ IFSDAGPDVRW+G+E G AGSTCWS NRT+ IG+ + Y GD G
Sbjct: 211 LIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGD-TEPSYSQEGDGYG 269
Query: 272 TDWLPAECDVSIRKGWFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETD 331
DW+PAECDVSIR GWFWH SE+PK +LL+IYYNSVGRNC+ LLNVPPN++GLISE D
Sbjct: 270 QDWVPAECDVSIRPGWFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISEQD 329
Query: 332 VQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDG 391
++ L EF ++IFS NLA FV +SS R + FGP+NVL++ L YWAP +
Sbjct: 330 IKVLEEFSEMKNSIFSNNLARKAFVNSSSIRGDQSSQFGPKNVLEEG-LDKYWAPEE--- 385
Query: 392 ISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRHEIFV------DGKLVAEGTTVGHK 445
+ + W+ + + FNV+ I+E I +GQRI + + + V GTTVG+K
Sbjct: 386 -NQNEWVLYLEFKDLVSFNVLEIREPIHMGQRIASFHLETRKTGSGEWERVVSGTTVGNK 444
Query: 446 KLHRLENGVIDGHVVRIKIKESRAVPLISSIGLHFDPYWHPNRQS 490
+L R N V++ +++ + ++R PLIS +GL+ D + +R +
Sbjct: 445 RLLRFLN-VVESRSLKLVVDKARTDPLISYLGLYMDKFSGSSRNT 488
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Hydrolyzes both 3- and 4-linked fucoses in Lewis determinants. Not active on neither 2-linked fucose nor on fucose in alpha-1,3-linkage to the innermost GlcNAc. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 1 |
| >sp|Q7XUR3|FUCO1_ORYSJ Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica GN=Os04g0560400 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q6AYS4|FUCO2_RAT Plasma alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P10901|FUCO_DICDI Alpha-L-fucosidase OS=Dictyostelium discoideum GN=alfA PE=3 SV=1 | Back alignment and function description |
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| >sp|P49713|FUCO_CAEEL Putative alpha-L-fucosidase OS=Caenorhabditis elegans GN=W03G11.3 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q99KR8|FUCO2_MOUSE Plasma alpha-L-fucosidase OS=Mus musculus GN=Fuca2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9BTY2|FUCO2_HUMAN Plasma alpha-L-fucosidase OS=Homo sapiens GN=FUCA2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5RFI5|FUCO2_PONAB Plasma alpha-L-fucosidase OS=Pongo abelii GN=FUCA2 PE=2 SV=1 | Back alignment and function description |
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| >sp|C3YWU0|FUCO_BRAFL Alpha-L-fucosidase OS=Branchiostoma floridae GN=BRAFLDRAFT_56888 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9VTJ4|FUCO_DROME Putative alpha-L-fucosidase OS=Drosophila melanogaster GN=Fuca PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| 224120178 | 485 | predicted protein [Populus trichocarpa] | 0.979 | 0.993 | 0.801 | 0.0 | |
| 255539645 | 484 | alpha-l-fucosidase, putative [Ricinus co | 0.979 | 0.995 | 0.804 | 0.0 | |
| 224136850 | 485 | predicted protein [Populus trichocarpa] | 0.981 | 0.995 | 0.770 | 0.0 | |
| 359490232 | 493 | PREDICTED: alpha-L-fucosidase 1-like [Vi | 0.977 | 0.975 | 0.765 | 0.0 | |
| 356575904 | 487 | PREDICTED: alpha-L-fucosidase 1-like [Gl | 0.975 | 0.985 | 0.734 | 0.0 | |
| 356535935 | 487 | PREDICTED: alpha-L-fucosidase 1-like [Gl | 0.975 | 0.985 | 0.730 | 0.0 | |
| 357444199 | 490 | Alpha-L-fucosidase [Medicago truncatula] | 0.983 | 0.987 | 0.731 | 0.0 | |
| 359490230 | 525 | PREDICTED: alpha-L-fucosidase 1-like [Vi | 0.953 | 0.893 | 0.727 | 0.0 | |
| 296084093 | 967 | unnamed protein product [Vitis vinifera] | 0.837 | 0.426 | 0.748 | 0.0 | |
| 449456291 | 496 | PREDICTED: alpha-L-fucosidase 1-like [Cu | 0.981 | 0.973 | 0.676 | 0.0 |
| >gi|224120178|ref|XP_002318264.1| predicted protein [Populus trichocarpa] gi|222858937|gb|EEE96484.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/488 (80%), Positives = 441/488 (90%), Gaps = 6/488 (1%)
Query: 1 MPKLCCFVCLITILFQLTNLASSKRQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVN 60
M KL C + +IT+L Q++ + S+R+ V TPPLP+ PLPS SQLKWQ+RELIMFLHFGVN
Sbjct: 1 MAKLWCLLTIITLL-QVSKVVISRRE-VTTPPLPILPLPSSSQLKWQERELIMFLHFGVN 58
Query: 61 TFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHS 120
TFTDSEWGTG+ENP IFNP+GL+A+QWVN AAEAG SLMILTAKHHDGFCLWPSK+T+HS
Sbjct: 59 TFTDSEWGTGHENPAIFNPVGLNASQWVNVAAEAGFSLMILTAKHHDGFCLWPSKYTDHS 118
Query: 121 VAHSPWKHGRGDVVQELVNAAKA-RGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQEL 179
VA SPWK+GRGDVVQELV AA+A G+DVGLYLSPWDRHD RYGHDLQYNEYYLAQLQEL
Sbjct: 119 VASSPWKNGRGDVVQELVIAARAHEGIDVGLYLSPWDRHDKRYGHDLQYNEYYLAQLQEL 178
Query: 180 LTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGF 239
L +YG VREIWFDGAKGSN PNMSYYF+DWF+MVKELQ+SINIFSDAGPDVRWVGNE GF
Sbjct: 179 LNKYGIVREIWFDGAKGSNVPNMSYYFSDWFSMVKELQTSINIFSDAGPDVRWVGNEMGF 238
Query: 240 AGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKLS 299
AGSTCWSTINRTSLSIGNGSIVDYL+TGD+KGTDWLPAECDVSIRKGWFWHKSE+PK+LS
Sbjct: 239 AGSTCWSTINRTSLSIGNGSIVDYLNTGDSKGTDWLPAECDVSIRKGWFWHKSESPKRLS 298
Query: 300 ELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKAS 359
ELL+IYY SVGRNCV+L NVPPNTTGLISE DVQRL+EF AIDTIFS NLAE+CFV+AS
Sbjct: 299 ELLDIYYKSVGRNCVLLFNVPPNTTGLISENDVQRLKEFRGAIDTIFSTNLAESCFVRAS 358
Query: 360 SQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIG 419
SQR GK G FGPENVLD DHL TYWAP+D + S+D+WIE + D+ LRFNVIRIQEAIG
Sbjct: 359 SQRGGKDGDFGPENVLDGDHLWTYWAPKDEE--SEDNWIEFKCIDK-LRFNVIRIQEAIG 415
Query: 420 LGQRIKRHEIFVDGKLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLISSIGLH 479
LGQRIK+HE++VDG+ VA+GTTVGHK+LHRLE GV+ GH+V IKI +SRAVPL+SSIGLH
Sbjct: 416 LGQRIKQHEVYVDGRKVAKGTTVGHKRLHRLEKGVVKGHIVSIKILKSRAVPLMSSIGLH 475
Query: 480 FDPYWHPN 487
+DP+WHPN
Sbjct: 476 YDPFWHPN 483
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539645|ref|XP_002510887.1| alpha-l-fucosidase, putative [Ricinus communis] gi|223550002|gb|EEF51489.1| alpha-l-fucosidase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224136850|ref|XP_002322431.1| predicted protein [Populus trichocarpa] gi|222869427|gb|EEF06558.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359490232|ref|XP_002270630.2| PREDICTED: alpha-L-fucosidase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356575904|ref|XP_003556076.1| PREDICTED: alpha-L-fucosidase 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535935|ref|XP_003536497.1| PREDICTED: alpha-L-fucosidase 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357444199|ref|XP_003592377.1| Alpha-L-fucosidase [Medicago truncatula] gi|355481425|gb|AES62628.1| Alpha-L-fucosidase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|359490230|ref|XP_002270674.2| PREDICTED: alpha-L-fucosidase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296084093|emb|CBI24481.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449456291|ref|XP_004145883.1| PREDICTED: alpha-L-fucosidase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| TAIR|locus:2046173 | 506 | FUC1 "alpha-L-fucosidase 1" [A | 0.896 | 0.871 | 0.519 | 4.5e-130 | |
| UNIPROTKB|F1S715 | 467 | FUCA2 "Uncharacterized protein | 0.546 | 0.576 | 0.254 | 7.5e-11 | |
| UNIPROTKB|F1N5H2 | 468 | FUCA2 "Uncharacterized protein | 0.540 | 0.568 | 0.246 | 2.1e-10 | |
| DICTYBASE|DDB_G0276661 | 458 | DDB_G0276661 [Dictyostelium di | 0.514 | 0.552 | 0.25 | 2.6e-10 | |
| RGD|1303053 | 459 | Fuca2 "fucosidase, alpha-L- 2, | 0.542 | 0.581 | 0.268 | 3.4e-10 | |
| ZFIN|ZDB-GENE-040801-78 | 451 | zgc:101116 "zgc:101116" [Danio | 0.475 | 0.518 | 0.261 | 4.2e-09 | |
| WB|WBGene00012225 | 482 | W03G11.3 [Caenorhabditis elega | 0.262 | 0.267 | 0.294 | 6.3e-09 | |
| MGI|MGI:1914098 | 461 | Fuca2 "fucosidase, alpha-L- 2, | 0.530 | 0.566 | 0.273 | 7.3e-09 | |
| UNIPROTKB|Q9BTY2 | 467 | FUCA2 "Plasma alpha-L-fucosida | 0.540 | 0.569 | 0.238 | 1.6e-08 | |
| UNIPROTKB|E1BS94 | 378 | FUCA2 "Uncharacterized protein | 0.483 | 0.629 | 0.241 | 2.9e-08 |
| TAIR|locus:2046173 FUC1 "alpha-L-fucosidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
Identities = 236/454 (51%), Positives = 315/454 (69%)
Query: 43 QLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILT 102
QL+WQ + MFLHFG NTFTDSEWGTG NP IFNP L+A+QWV A ++G S +ILT
Sbjct: 42 QLQWQLGSMAMFLHFGPNTFTDSEWGTGKANPSIFNPTHLNASQWVQIAKDSGFSRVILT 101
Query: 103 AKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162
AKHHDGFCLWPS++T++SV S W++G GDVV EL +AAK G+ +GLYLSPWDRH+ Y
Sbjct: 102 AKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAELASAAKEAGIGLGLYLSPWDRHEQCY 161
Query: 163 GHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINI 222
G L+YNE+YL+Q+ ELLT+YG+++E+W DGAKG +M Y+F WF+++ +LQ I
Sbjct: 162 GKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDTWFSLIHQLQPKAVI 221
Query: 223 FSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVS 282
FSDAGPDVRW+G+E G AGSTCWS NRT+ IG+ Y GD G DW+PAECDVS
Sbjct: 222 FSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGDTE-PSYSQEGDGYGQDWVPAECDVS 280
Query: 283 IRKGWFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI 342
IR GWFWH SE+PK +LL+IYYNSVGRNC+ LLNVPPN++GLISE D++ L EF
Sbjct: 281 IRPGWFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISEQDIKVLEEFSEMK 340
Query: 343 DTIFSKNLAENCFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRA 402
++IFS NLA FV +SS R + FGP+NVL++ L YWAP + + + W+
Sbjct: 341 NSIFSNNLARKAFVNSSSIRGDQSSQFGPKNVLEEG-LDKYWAPEE----NQNEWVLYLE 395
Query: 403 ADEGLRFNVIRIQEAIGLGQRIKRHEIFV------DGKLVAEGTTVGHKKLHRLENGVID 456
+ + FNV+ I+E I +GQRI + + + V GTTVG+K+L R N V++
Sbjct: 396 FKDLVSFNVLEIREPIHMGQRIASFHLETRKTGSGEWERVVSGTTVGNKRLLRFLN-VVE 454
Query: 457 GHVVRIKIKESRAVPLISSIGLHFDPYWHPNRQS 490
+++ + ++R PLIS +GL+ D + +R +
Sbjct: 455 SRSLKLVVDKARTDPLISYLGLYMDKFSGSSRNT 488
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| UNIPROTKB|F1S715 FUCA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N5H2 FUCA2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0276661 DDB_G0276661 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| RGD|1303053 Fuca2 "fucosidase, alpha-L- 2, plasma" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040801-78 zgc:101116 "zgc:101116" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| WB|WBGene00012225 W03G11.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| MGI|MGI:1914098 Fuca2 "fucosidase, alpha-L- 2, plasma" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9BTY2 FUCA2 "Plasma alpha-L-fucosidase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BS94 FUCA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GW72 | FUCO1_ARATH | 3, ., 2, ., 1, ., 5, 1 | 0.5204 | 0.9186 | 0.8932 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1.51 | 0.914 |
| 3rd Layer | 3.2.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 492 | |||
| COG3669 | 430 | COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate | 6e-64 | |
| smart00812 | 384 | smart00812, Alpha_L_fucos, Alpha-L-fucosidase | 2e-38 | |
| pfam01120 | 320 | pfam01120, Alpha_L_fucos, Alpha-L-fucosidase | 5e-35 |
| >gnl|CDD|226195 COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 6e-64
Identities = 137/465 (29%), Positives = 198/465 (42%), Gaps = 61/465 (13%)
Query: 34 PLSPLPSFSQLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAE 93
+ P PS L + +E F HF NT+ D EW G E P F D +W E
Sbjct: 6 SVPPFPSEWYLAYLYQEGSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWARLFKE 65
Query: 94 AGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153
AG +IL AKHHDGF LWP T++SV +S + + D+V EL A + +G+ G+YLS
Sbjct: 66 AGAKYVILVAKHHDGFALWP---TDYSVWNSVKRGPKRDLVGELAKAVREQGLRFGVYLS 122
Query: 154 ----PWDRHDPRYGHDLQYNE--YYLAQLQELLT-----RYGDVREIWFDGAKGSNAPNM 202
PWD H Y D + YYLAQLQELL+ G E+W D A G+ +
Sbjct: 123 GAWHPWDFHSGYY-ADSDEKDPNYYLAQLQELLSGANYGNAGPFDEVWLDNAWGNGPAKV 181
Query: 203 SYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVD 262
+Y+ WF +++ Q + F G + W E G+ W + L
Sbjct: 182 NYWLARWFELIRRYQPDLVYFDWWGT-ILWATAEYGYNR---WPGVRPGKLETEARGN-- 235
Query: 263 YLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPN 322
YL GD T + D S+R H+ + K + EL+ I ++ V + +LLN+PP
Sbjct: 236 YLRHGDNSWTIFTCGGPDHSLRP---GHEDQDYKSVEELVSILFDVVSKGGPLLLNIPPK 292
Query: 323 TTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVLD---DDH 379
GLI + D +RL + ++ G G GP V D
Sbjct: 293 GDGLIPDLDKERLLDMAGWLN-----------------VNYGAILGLGPWRVGCAGPTDG 335
Query: 380 LRTYWAPRDGDGISDDHWIEIRAADEGLR-----FNVIRIQEAIGLGQRIKRHEIFVDGK 434
+ + D D + F+V + E + LGQRI + + V+
Sbjct: 336 VEGSFTASDAD---------PFIQLDLRFTTPKTFDVALLMEWLTLGQRIAAYSVTVEQD 386
Query: 435 L-VAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLISSIGL 478
V G T+G+K+ L V +R++I S LI GL
Sbjct: 387 QRVGSGHTIGYKR--LLHGAVATAPKLRLEIPSSAPALLIREPGL 429
|
Length = 430 |
| >gnl|CDD|214829 smart00812, Alpha_L_fucos, Alpha-L-fucosidase | Back alignment and domain information |
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| >gnl|CDD|216307 pfam01120, Alpha_L_fucos, Alpha-L-fucosidase | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| smart00812 | 384 | Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro | 100.0 | |
| PF01120 | 346 | Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00 | 100.0 | |
| COG3669 | 430 | Alpha-L-fucosidase [Carbohydrate transport and met | 100.0 | |
| KOG3340 | 454 | consensus Alpha-L-fucosidase [Carbohydrate transpo | 100.0 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 99.66 | |
| cd00057 | 143 | FA58C Substituted updates: Jan 31, 2002 | 99.11 | |
| PF00754 | 129 | F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 | 98.66 | |
| PF14488 | 166 | DUF4434: Domain of unknown function (DUF4434) | 98.1 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 97.77 | |
| smart00607 | 151 | FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domai | 97.22 | |
| PF02065 | 394 | Melibiase: Melibiase; InterPro: IPR000111 O-Glycos | 97.11 | |
| cd08366 | 139 | APC10 APC10 subunit of the anaphase-promoting comp | 96.64 | |
| smart00231 | 139 | FA58C Coagulation factor 5/8 C-terminal domain, di | 96.49 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 95.4 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 95.4 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 95.29 | |
| cd08666 | 134 | APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H | 93.77 | |
| PF03256 | 193 | APC10: Anaphase-promoting complex, subunit 10 (APC | 93.52 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 93.49 | |
| PRK08005 | 210 | epimerase; Validated | 93.39 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 92.92 | |
| cd08159 | 129 | APC10-like APC10-like DOC1 domains in E3 ubiquitin | 92.54 | |
| cd08365 | 131 | APC10-like1 APC10-like DOC1 domains of E3 ubiquiti | 91.81 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 91.77 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 91.67 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 91.59 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 91.32 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 91.23 | |
| cd08665 | 131 | APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit | 91.1 | |
| PLN02229 | 427 | alpha-galactosidase | 90.85 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 90.48 | |
| cd06589 | 265 | GH31 The enzymes of glycosyl hydrolase family 31 ( | 90.26 | |
| KOG3437 | 184 | consensus Anaphase-promoting complex (APC), subuni | 90.21 | |
| cd08667 | 131 | APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri | 90.08 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 89.92 | |
| PF07738 | 135 | Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I | 88.78 | |
| COG3867 | 403 | Arabinogalactan endo-1,4-beta-galactosidase [Carbo | 88.7 | |
| PLN02692 | 412 | alpha-galactosidase | 88.13 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 87.89 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 87.16 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 86.38 | |
| PLN02960 | 897 | alpha-amylase | 86.38 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 85.8 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 85.01 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 84.74 | |
| PLN02808 | 386 | alpha-galactosidase | 83.8 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 83.29 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 83.23 | |
| cd08664 | 152 | APC10-HERC2 APC10-like DOC1 domain present in HERC | 83.08 | |
| PF01055 | 441 | Glyco_hydro_31: Glycosyl hydrolases family 31 ; In | 82.95 | |
| PRK14057 | 254 | epimerase; Provisional | 82.45 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 82.34 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 81.49 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 80.55 | |
| cd06594 | 317 | GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl | 80.45 | |
| cd06602 | 339 | GH31_MGAM_SI_GAA This family includes the followin | 80.33 | |
| cd06600 | 317 | GH31_MGAM-like This family includes the following | 80.17 |
| >smart00812 Alpha_L_fucos Alpha-L-fucosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-82 Score=659.39 Aligned_cols=294 Identities=30% Similarity=0.510 Sum_probs=253.8
Q ss_pred ccCCCCCCCCCCCCCCCCHhhHhhhcCceEEEEEecccccCC--CCCCCCC--------------------CCCCCCCCC
Q 011170 23 SKRQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTD--SEWGTGN--------------------ENPEIFNPL 80 (492)
Q Consensus 23 ~~~~~~~~~~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~--~EW~~g~--------------------~~p~~F~p~ 80 (492)
+..|.++|+++..+++|.| |+++|||||||||+||+++ .||+.+. ..+++|||+
T Consensus 4 ~~~~~~~~~sl~~~~~~~W----f~dakfGiFiHWG~ySv~~~~~eW~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~F~p~ 79 (384)
T smart00812 4 QGPYQPTWESLDKRPLPEW----FRDAKFGIFIHWGVYSVPGFGGEWYWRQPNSPEYKHHIKNYGPEFGYKDFAPQFTAE 79 (384)
T ss_pred CCCCCCChhhhhcccChhH----HhcCceEEEEEecccccccCCccccccCCCCcHHHHHHhccCCcccHHHHHhcCCch
Confidence 3578999999999888888 9999999999999999998 8998421 114799999
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP 160 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~ 160 (492)
+|||+|||++||+|||||+|||||||||||||||++|+||++++|+ |||||+||++||||+|||||+|||++|||+|
T Consensus 80 ~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p---krDiv~el~~A~rk~Glk~G~Y~S~~DW~~p 156 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP---KRDLVGELADAVRKRGLKFGLYHSLFDWFNP 156 (384)
T ss_pred hCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC---CcchHHHHHHHHHHcCCeEEEEcCHHHhCCC
Confidence 9999999999999999999999999999999999999999988754 6999999999999999999999999999999
Q ss_pred CCCC----------CchhhHHH---HHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCe---eEec
Q 011170 161 RYGH----------DLQYNEYY---LAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSI---NIFS 224 (492)
Q Consensus 161 ~yg~----------~~~y~~~~---~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~---vi~~ 224 (492)
.|+. ...|.+|+ ++||+||++|||| ++|||||+++.. ...|+..+++++++++||++ ||++
T Consensus 157 ~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp-d~lWfD~~~~~~--~~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 157 LYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKP-DLLWFDGGWEAP--DDYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhcCCC-ceEEEeCCCCCc--cchhcHHHHHHHHHHhCCCCceEEEEc
Confidence 9864 13677777 9999999999999 999999988653 24567899999999999998 6643
Q ss_pred CCCCCcccc--cCCCCCCCcceeeeccCCccccCCCccccccccCCCCCCCCccccceeecCCCCCCCCCCC---CCCHH
Q 011170 225 DAGPDVRWV--GNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSET---PKKLS 299 (492)
Q Consensus 225 ~~g~d~rw~--gne~G~~~~~~w~~~~~~~~~~G~~~~~~~~~~g~~~~~~w~P~E~d~~i~~~Wfy~~~~~---~ks~~ 299 (492)
||. ++..|.. . ...+++.|.+..+.|||+|+||+.+|||++++. +||++
T Consensus 234 ------R~~~~~~~~g~~-----------------~---~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 234 ------RWGGTGCKHGGF-----------------Y---TDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred ------cccccCCCCCCc-----------------c---cCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 554 2222210 0 111234556667889999999999999998853 99999
Q ss_pred HHHHHHHhhhccCceEEEccCCCCCCCCCHHHHHHHHHHHHHH----HHhhcccccc
Q 011170 300 ELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKNLAE 352 (492)
Q Consensus 300 ~Li~~l~~~V~rngnlLLNigP~~dG~Ip~~~~~~L~e~G~wl----~~~f~~~la~ 352 (492)
+||++|+++|||||||||||||++||+||+.++++|++||+|| ++||+|+...
T Consensus 288 ~li~~l~~~Vsk~GnlLLNVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~~~ 344 (384)
T smart00812 288 ELIRDLVDIVSKGGNLLLNVGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRPWR 344 (384)
T ss_pred HHHHHHhhhcCCCceEEEccCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCCCc
Confidence 9999999999999999999999999999999999999999999 4888887653
|
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis. |
| >PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
| >cd00057 FA58C Substituted updates: Jan 31, 2002 | Back alignment and domain information |
|---|
| >PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain | Back alignment and domain information |
|---|
| >PF14488 DUF4434: Domain of unknown function (DUF4434) | Back alignment and domain information |
|---|
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
| >smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain | Back alignment and domain information |
|---|
| >PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination | Back alignment and domain information |
|---|
| >smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain | Back alignment and domain information |
|---|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination | Back alignment and domain information |
|---|
| >PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase | Back alignment and domain information |
|---|
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination | Back alignment and domain information |
|---|
| >cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination | Back alignment and domain information |
|---|
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
| >cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination | Back alignment and domain information |
|---|
| >PLN02229 alpha-galactosidase | Back alignment and domain information |
|---|
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
| >cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase | Back alignment and domain information |
|---|
| >KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs | Back alignment and domain information |
|---|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
| >PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development | Back alignment and domain information |
|---|
| >COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02692 alpha-galactosidase | Back alignment and domain information |
|---|
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PLN02808 alpha-galactosidase | Back alignment and domain information |
|---|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
| >cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2) | Back alignment and domain information |
|---|
| >PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride | Back alignment and domain information |
|---|
| >cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase | Back alignment and domain information |
|---|
| >cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 492 | ||||
| 3eyp_A | 469 | Crystal Structure Of Putative Alpha-L-Fucosidase Fr | 3e-83 | ||
| 3ues_A | 478 | Crystal Structure Of Alpha-1,34-Fucosidase From Bif | 4e-80 | ||
| 3uet_A | 478 | Crystal Structure Of Alpha-1,34-Fucosidase From Bif | 1e-78 | ||
| 3mo4_A | 480 | The Crystal Structure Of An Alpha-(1-3,4)-Fucosidas | 7e-78 | ||
| 3gza_A | 443 | Crystal Structure Of Putative Alpha-L-Fucosidase (N | 2e-45 | ||
| 2xib_A | 453 | Crystal Structure Of An Alpha-L-Fucosidase Gh29 Fro | 1e-24 | ||
| 2wvt_A | 443 | Crystal Structure Of An Alpha-L-Fucosidase Gh29 Fro | 1e-24 | ||
| 2wvs_A | 443 | Crystal Structure Of An Alpha-L-Fucosidase Gh29 Tra | 1e-24 | ||
| 2wvv_B | 450 | Crystal Structure Of An Alpha-L-Fucosidase Gh29 Fro | 1e-24 | ||
| 2wvv_A | 450 | Crystal Structure Of An Alpha-L-Fucosidase Gh29 Fro | 1e-24 | ||
| 1hl8_A | 449 | Crystal Structure Of Thermotoga Maritima Alpha-Fuco | 5e-12 | ||
| 2zwy_A | 455 | Alpha-L-Fucosidase Length = 455 | 5e-12 | ||
| 1odu_A | 449 | Crystal Structure Of Thermotoga Maritima Alpha-Fuco | 5e-12 | ||
| 2wsp_A | 449 | Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, | 2e-11 |
| >pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From Bacteroides Thetaiotaomicron Length = 469 | Back alignment and structure |
|
| >pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis Complexed With Deoxyfuconojirimycin Length = 478 | Back alignment and structure |
| >pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT COMPLEXED WITH LACTO-N- Fucopentaose Ii Length = 478 | Back alignment and structure |
| >pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697 Length = 480 | Back alignment and structure |
| >pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase (Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.60 A Resolution Length = 443 | Back alignment and structure |
| >pdb|2XIB|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From Bacteroides Thetaiotaomicron In Complex With Deoxyfuconojirimycin Length = 453 | Back alignment and structure |
| >pdb|2WVT|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From Bacteroides Thetaiotaomicron In Complex With A Novel Iminosugar Fucosidase Inhibitor Length = 443 | Back alignment and structure |
| >pdb|2WVS|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped Covalent Intermediate From Bacteroides Thetaiotaomicron In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q Mutant Length = 443 | Back alignment and structure |
| >pdb|2WVV|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From Bacteroides Thetaiotaomicron Length = 450 | Back alignment and structure |
| >pdb|2WVV|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From Bacteroides Thetaiotaomicron Length = 450 | Back alignment and structure |
| >pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase Length = 449 | Back alignment and structure |
| >pdb|2ZWY|A Chain A, Alpha-L-Fucosidase Length = 455 | Back alignment and structure |
| >pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase In Complex With Fucose Length = 449 | Back alignment and structure |
| >pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3 Length = 449 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Length = 469 | Back alignment and structure |
|---|
Score = 461 bits (1187), Expect = e-160
Identities = 181/469 (38%), Positives = 252/469 (53%), Gaps = 30/469 (6%)
Query: 31 PPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTD-SEWGTGNENPEIFNPLGLDANQWVN 89
P +PS QL+W RE+I F HFG+NTF + G G + IFNP LD QW+
Sbjct: 2 SLAPCGLVPSARQLEWYNREMIAFFHFGINTFEEYVNEGDGKASTAIFNPTALDCRQWMQ 61
Query: 90 TAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149
T AG+ ILTAKH DGFCLWPSK+T++SV ++ WK+G+GDVV+E V+A + G+ G
Sbjct: 62 TLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAG 121
Query: 150 LYLSPWDRHDPRY--GHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFT 207
+YL P DRH+ +Y EYY QL EL++ YG + E W+DGA + +
Sbjct: 122 IYLGPHDRHEHLSPLYTTERYKEYYAHQLGELMSDYGKIWETWWDGA--GADELTTPVYR 179
Query: 208 DWFAMVKELQSSINIFSDAG----PDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDY 263
W+ +V+E Q IF DVRW+GNE G AG CW+T + ++
Sbjct: 180 HWYKIVREKQPDCVIFGTKNSYPFADVRWMGNEAGEAGDPCWATTDSVAIRDEAQYY-KG 238
Query: 264 LSTGDAKGTDWLPAECDVSIRKGWFWHKSET--PKKLSELLEIYYNSVGRNCVMLLNVPP 321
L+ G G ++PAE DVSIR WF+H E K + EL +IY SVGRN V+LLN PP
Sbjct: 239 LNEGMLDGDAYIPAETDVSIRPSWFYHAEEDSRVKSVRELWDIYCTSVGRNSVLLLNFPP 298
Query: 322 NTTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVLDDDHLR 381
+ GLI TD ID FS NL VKA++ R G + PE +LD++
Sbjct: 299 DRRGLIHSTDSLHAALLKQGIDETFSTNLLRGAKVKATNVR---GAKYSPEKMLDNEK-N 354
Query: 382 TYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRH--EIFVDG---KLV 436
TY+A +DG+ I + + F+ + I+E I LG R + E VDG +
Sbjct: 355 TYFAGKDGE---VKADIIFT-LPKTIEFDCLMIEEVIELGHRTTKWSVEYTVDGKNWITI 410
Query: 437 AEGT---TVGHKKLHRLENGVIDGHVVRIKIKESRAVPLISSIGLHFDP 482
E T +GHK + RL + VR++I++ +A P I + G++
Sbjct: 411 PEATDKQAIGHKWIVRLAP--VKAKQVRLRIQDGKACPAIHTFGVYKQS 457
|
| >3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Length = 478 | Back alignment and structure |
|---|
| >3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} Length = 443 | Back alignment and structure |
|---|
| >2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* Length = 450 | Back alignment and structure |
|---|
| >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A* Length = 455 | Back alignment and structure |
|---|
| >4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* Length = 161 | Back alignment and structure |
|---|
| >4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Length = 161 | Back alignment and structure |
|---|
| >4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} Length = 149 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| 3ues_A | 478 | Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr | 100.0 | |
| 3eyp_A | 469 | Putative alpha-L-fucosidase; structural genomics, | 100.0 | |
| 3gza_A | 443 | Putative alpha-L-fucosidase; NP_812709.1, structur | 100.0 | |
| 2wvv_A | 450 | Alpha-L-fucosidase; alpha-L-fucose, hydrolase, gly | 100.0 | |
| 2zxd_A | 455 | Alpha-L-fucosidase, putative; TIM barrel, hydrolas | 100.0 | |
| 4h41_A | 340 | Putative alpha-L-fucosidase; hydrolase, carbohydra | 99.8 | |
| 4a3z_A | 161 | GH89_CBM32, alpha-N-acetylglucosaminidase family p | 99.45 | |
| 3lei_A | 153 | Platelet aggregation factor SM-HPAF; lectin domain | 99.42 | |
| 4a42_A | 149 | GH89_CBM32-4, alpha-N-acetylglucosaminidase family | 99.28 | |
| 4gwi_A | 153 | Lectinolysin, platelet aggregation factor SM-HPAF; | 99.2 | |
| 1tvg_A | 153 | LOC51668 protein; cell cycle, structural genomics, | 99.2 | |
| 2j1v_A | 151 | Fucolectin-related protein; carbohydrate-binding p | 99.15 | |
| 4a41_A | 161 | GH89_CBM32-5, alpha-N-acetylglucosaminidase family | 99.13 | |
| 2v72_A | 143 | CBM32, EXO-alpha-sialidase; galactose, bacterial p | 99.11 | |
| 2j1a_A | 150 | Hyaluronidase, CBM32; protein-carbohydrate interac | 99.08 | |
| 2jda_A | 145 | Yecbm32; hypothetical protein, carbohydrate- bindi | 99.07 | |
| 3cqo_A | 293 | FBP32; F-lectin, fucolectin, sugar binding protein | 99.04 | |
| 2yc2_A | 139 | IFT25, intraflagellar transport protein 25; transp | 99.03 | |
| 4a4a_A | 914 | Alpha-N-acetylglucosaminidase family protein; hydr | 99.02 | |
| 3f2z_A | 159 | Uncharacterized protein BF3579; the present C-term | 98.96 | |
| 2j22_A | 148 | Fucolectin-related protein; carbohydrate-binding p | 98.89 | |
| 3ggl_A | 169 | Putative chitobiase; X-RAY, structure genomics, NE | 98.82 | |
| 3cqo_A | 293 | FBP32; F-lectin, fucolectin, sugar binding protein | 98.79 | |
| 1k12_A | 158 | Lectin; beta barrel, protein carbohydrate complex, | 98.72 | |
| 2qqi_A | 318 | Neuropilin-1; VEGF receptor, semaphorin receptor, | 98.51 | |
| 2v5d_A | 737 | O-GLCNACASE NAGJ; family 32 carbohydrate binding m | 98.49 | |
| 3bn6_A | 158 | Lactadherin; anticoagulation, anti-coagulation, an | 98.35 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 98.32 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.21 | |
| 4deq_A | 218 | Neuropilin-1, vascular endothelial growth factor; | 98.0 | |
| 2qqj_A | 325 | Neuropilin-2; VEGF receptor, semaphorin receptor, | 97.91 | |
| 1czt_A | 160 | Protein (coagulation factor V); membrane-binding, | 97.91 | |
| 3hnm_A | 172 | Putative chitobiase; PSI-2, protein structure init | 97.86 | |
| 2qqm_A | 450 | Neuropilin-1; VEGF receptor, semaphorin receptor, | 97.86 | |
| 1sdd_B | 647 | Coagulation factor V; copper-binding protein, cofa | 97.79 | |
| 2qqi_A | 318 | Neuropilin-1; VEGF receptor, semaphorin receptor, | 97.76 | |
| 2vm9_A | 257 | Discoidin-2, discoidin II; DDR, lectin, aggregatio | 97.74 | |
| 2w1s_A | 192 | Hyaluronoglucosaminidase; hexosaminidase, family 3 | 97.69 | |
| 2wuh_A | 178 | Discoidin domain receptor 2; receptor-peptide comp | 97.65 | |
| 3hny_M | 159 | Coagulation factor VIII; blood clotting, acute pha | 97.62 | |
| 2qqm_A | 450 | Neuropilin-1; VEGF receptor, semaphorin receptor, | 97.62 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 97.5 | |
| 2qqj_A | 325 | Neuropilin-2; VEGF receptor, semaphorin receptor, | 97.41 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 97.22 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 97.16 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 97.13 | |
| 2qqo_A | 460 | Neuropilin-2; VEGF receptor, semaphorin receptor, | 97.11 | |
| 2qqk_A | 579 | Neuropilin-2; VEGF receptor, semaphorin receptor, | 97.1 | |
| 2zxq_A | 1376 | Endo-alpha-N-acetylgalactosaminidase; broken TIM b | 97.04 | |
| 2r7e_B | 770 | Coagulation factor VIII; ceruloplasmin fold, cuppe | 97.01 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 96.74 | |
| 2wn3_A | 254 | Discoidin-1 subunit A; type-H lectin, cell adhesio | 96.73 | |
| 4gz9_A | 577 | Neuropilin-1, A5 protein; multi-domain, cell-CELL | 96.71 | |
| 2qqk_A | 579 | Neuropilin-2; VEGF receptor, semaphorin receptor, | 96.41 | |
| 2qqo_A | 460 | Neuropilin-2; VEGF receptor, semaphorin receptor, | 96.37 | |
| 3qho_A | 458 | Endoglucanase, 458AA long hypothetical endo-1,4-be | 96.16 | |
| 4gz9_A | 577 | Neuropilin-1, A5 protein; multi-domain, cell-CELL | 96.12 | |
| 1jhj_A | 171 | APC10; beta sandwich, jellyroll, cell cycle; 1.60A | 95.98 | |
| 1uas_A | 362 | Alpha-galactosidase; TIM-barrel, beta-alpha-barrel | 95.94 | |
| 1sdd_B | 647 | Coagulation factor V; copper-binding protein, cofa | 95.87 | |
| 7a3h_A | 303 | Endoglucanase; hydrolase, cellulose degradation, g | 95.81 | |
| 2yfu_A | 155 | Carbohydrate binding family 6; sugar binding prote | 95.8 | |
| 3gdb_A | 937 | Endo-D, putative uncharacterized protein SPR0440; | 95.57 | |
| 2cho_A | 716 | Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro | 95.42 | |
| 3pzt_A | 327 | Endoglucanase; alpha/beta barrel, glycosyl hydrola | 95.37 | |
| 4ag4_A | 351 | Epithelial discoidin domain-containing receptor 1; | 95.22 | |
| 1ece_A | 358 | Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. | 95.13 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 95.09 | |
| 1uuq_A | 440 | Mannosyl-oligosaccharide glucosidase; hydrolase, m | 94.76 | |
| 3icg_A | 515 | Endoglucanase D; cellulase, xylanase, carbohydrate | 94.52 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 94.44 | |
| 2r7e_B | 770 | Coagulation factor VIII; ceruloplasmin fold, cuppe | 94.09 | |
| 2whl_A | 294 | Beta-mannanase, baman5; glycoside hydrolase, hydro | 94.03 | |
| 2jep_A | 395 | Xyloglucanase; family 5, plant cell WALL, hydrolas | 93.97 | |
| 1rh9_A | 373 | Endo-beta-mannanase; endo-beta-mannase, retaining, | 93.58 | |
| 3qr3_A | 340 | Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A | 93.5 | |
| 1bqc_A | 302 | Protein (beta-mannanase); glycosyl hydrolase, fami | 93.5 | |
| 1gqp_A | 221 | DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, | 93.35 | |
| 3jug_A | 345 | Beta-mannanase; TIM-barrel, glycosidase, hydrolase | 93.31 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 93.26 | |
| 3a5v_A | 397 | Alpha-galactosidase; beta/alpha barrel, N-glycosyl | 93.16 | |
| 3vup_A | 351 | Beta-1,4-mannanase; TIM barrel, digestive fluid, H | 93.09 | |
| 3cc1_A | 433 | BH1870 protein, putative alpha-N-acetylgalactosami | 93.07 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 92.99 | |
| 3ndz_A | 345 | Endoglucanase D; cellotriose, xylanase, carbohydra | 92.83 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 92.62 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 92.01 | |
| 2c0h_A | 353 | Mannan endo-1,4-beta-mannosidase; hydrolase, signa | 91.99 | |
| 1szn_A | 417 | Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma | 91.9 | |
| 2osx_A | 481 | Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel | 91.85 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 91.82 | |
| 4hty_A | 359 | Cellulase; (alpha/beta)8 barrel, family 5 endogluc | 91.71 | |
| 4do4_A | 400 | Alpha-N-acetylgalactosaminidase; pharmacological c | 91.7 | |
| 3ayr_A | 376 | Endoglucanase; TIM barrel, hydrolase, carbohydrate | 91.43 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 91.43 | |
| 1tvn_A | 293 | Cellulase, endoglucanase G; glycoside hydrolase, C | 91.4 | |
| 1wky_A | 464 | Endo-beta-1,4-mannanase; TIM barrel, catalytic dom | 91.35 | |
| 2cks_A | 306 | Endoglucanase E-5; carbohydrate metabolism, polysa | 90.96 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 90.86 | |
| 1kwg_A | 645 | Beta-galactosidase; TIM barrel, glycoside hydrolas | 90.53 | |
| 3tty_A | 675 | Beta-GAL, beta-galactosidase; TIM barrel, glycosid | 90.44 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 90.23 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 90.16 | |
| 1egz_A | 291 | Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL | 90.09 | |
| 4awe_A | 387 | Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana | 90.07 | |
| 1edg_A | 380 | Endoglucanase A; family A, cellulases, xylanases, | 89.5 | |
| 3l55_A | 353 | B-1,4-endoglucanase/cellulase; putative beta-1,4-e | 89.38 | |
| 1h1n_A | 305 | Endo type cellulase ENGI; hydrolase, glycosyl hydr | 88.74 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 88.71 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 88.59 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 88.17 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 87.91 | |
| 3lrk_A | 479 | Alpha-galactosidase 1; tetramer, GH27, glycoprotei | 87.79 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 87.51 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 87.44 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 87.18 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 86.49 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 86.03 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 85.61 | |
| 3hg3_A | 404 | Alpha-galactosidase A; glycoprotein, carbohydrate- | 84.56 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 84.4 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 84.37 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 83.71 | |
| 3cmg_A | 667 | Putative beta-galactosidase; structural genomics, | 83.53 | |
| 3a21_A | 614 | Putative secreted alpha-galactosidase; beta-alpha- | 83.37 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 82.94 | |
| 1w91_A | 503 | Beta-xylosidase; MAD, seMet, tetramer, hydrolase; | 82.7 | |
| 4ekj_A | 500 | Beta-xylosidase; TIM-barrel fold, hemicellulase, h | 82.25 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 82.05 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 81.27 | |
| 1g01_A | 364 | Endoglucanase; alpha/beta barrel, TIM barrel, hydr | 80.81 |
| >3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-121 Score=976.45 Aligned_cols=431 Identities=38% Similarity=0.767 Sum_probs=391.2
Q ss_pred CCCCCCCCHhhHhhhcCceEEEEEecccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccC
Q 011170 33 LPLSPLPSFSQLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLW 112 (492)
Q Consensus 33 ~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~~EW~~g~~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lW 112 (492)
.+..++|+++|++||++|||||||||||||+++||+.|++.|++|||++|||+|||++||+|||||+|||||||||||||
T Consensus 13 ~~~~~~Ps~~q~~~~~~~~g~FiH~g~~t~~~~eW~~g~~~~~~F~p~~fd~~~W~~~~k~aGakyvvlt~kHHdGF~lw 92 (478)
T 3ues_A 13 YLANVRPSSRQLAWQRMEMYAFLHFGMNTMTDREWGLGHEDPALFNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLW 92 (478)
T ss_dssp HHTTCCCCHHHHHHHTTCEEEEECCSHHHHHTCSSCCSCCCGGGCCCSSCCHHHHHHHHHHTTCSEEEEEEECTTCCBSS
T ss_pred ccccCCCCHHHHHHHhCCceEEEEcccCcCccccccCCCCChhhCCcccCCHHHHHHHHHHcCCCEEEEeEEecCCcccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 113 PSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 113 pS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
||++|+|+|+++||++||||||+||++||||+|||||+|||+||||++.|+....|++|+.+||+||+++|||++++|||
T Consensus 93 ~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S~~d~~~~~y~~~~~y~~~~~~ql~EL~~~Yg~~~~~W~D 172 (478)
T 3ues_A 93 PSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESYGKGKAYDDFYVGQLTELLTQYGPIFSVWLD 172 (478)
T ss_dssp CCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEECSCCSSCTTTTSSHHHHHHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeChHHhCCcccCchHHHHHHHHHHHHHHHhcCCcceEEEee
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred CCCCCC--CCCccccHHHHHHHHHhhCCCeeEecCCCCCcccccCCCCCCCcceeeeccCCccccCCC----------cc
Q 011170 193 GAKGSN--APNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNG----------SI 260 (492)
Q Consensus 193 g~~~~~--~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~d~rw~gne~G~~~~~~w~~~~~~~~~~G~~----------~~ 260 (492)
|+++.+ .+.+.|++++++++||++||++||+ +.|+|+||+|||.|.+++++|++++....+.+.. .+
T Consensus 173 g~~~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~-~~g~d~RW~gne~G~~~~~~w~~~~~~~~t~e~~~~~~~~~d~~~~ 251 (478)
T 3ues_A 173 GANGEGKNGKTQYYDWDRYYNVIRSLQPDAVIS-VCGPDVRWAGNEAGHVRDNEWSVVPRRLRSAELTMEKSQQEDDASF 251 (478)
T ss_dssp CCCCCCTTSCCCCCCHHHHHHHHHHHCTTSEEE-ESSSSBEECSCSSCCCCSSCCSEEEGGGGGTTCC------------
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHCcCEEEE-CCCCCcccccccccccCccccccccccccChhhccccccccccccc
Confidence 998643 2346789999999999999999975 6899999999999999999999776433222110 00
Q ss_pred cccccc-----C-------CCCCCCCccccceeecCCCCCCCCC--CCCCCHHHHHHHHHhhhccCceEEEccCCCCCCC
Q 011170 261 VDYLST-----G-------DAKGTDWLPAECDVSIRKGWFWHKS--ETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGL 326 (492)
Q Consensus 261 ~~~~~~-----g-------~~~~~~w~P~E~d~~i~~~Wfy~~~--~~~ks~~~Li~~l~~~V~rngnlLLNigP~~dG~ 326 (492)
+..+.. | .+.+..|.|||||+||+++|||+++ ..+||+++||++|+++|||||||||||||++||+
T Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~w~P~E~~~ti~~~W~y~~~~d~~~ks~~~li~~l~~~V~~ngnlLLNvgP~~~G~ 331 (478)
T 3ues_A 252 ATTVSSQDDDLGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVMSADQLFDLWLSAVGGNSSLLLNIPPSPEGL 331 (478)
T ss_dssp -CCCCTTCSCSSSHHHHGGGTTCEEECCEEEEEESSSSSSCCGGGTTCCCCHHHHHHHHHHHHTBTEEEEEECCCCTTSS
T ss_pred ccccccccccccccccccccccccCCCccccccccCCCCCCCcCCCCCcCCHHHHHHHHHHHhccCceEEECCCCCCCCC
Confidence 011100 0 0334569999999999999999985 4699999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccccc-cccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceE--EEeccc
Q 011170 327 ISETDVQRLREFGTAIDTIFSKNLAEN-CFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHW--IEIRAA 403 (492)
Q Consensus 327 Ip~~~~~~L~e~G~wl~~~f~~~la~~-a~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~w--i~l~~~ 403 (492)
||++++++|++||+||+. |+.+|+++ ++|+|||++ |.|++++|||.+ |||+++++... +| |+|++
T Consensus 332 i~~~~~~~L~e~G~wl~~-~g~nla~~~~~vtaSs~~------~~~~~a~Dgn~~-TyW~a~~~~~~---~~l~idLg~- 399 (478)
T 3ues_A 332 LAEPDVQSLKGLGRRVSE-FREALASVRCEARTSSAS------AAAAHLVDGNRD-TFWRPDADDAA---PAITLTLPQ- 399 (478)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHHHTCCCEEEESSCG------GGGGGGSSSCTT-CCBCCCTTCSS---CEEEEEEEE-
T ss_pred cCHHHHHHHHHHHHHHHh-ccccccccccceEeeccc------cChhhcccCCCC-ceEeCCCCCCC---eeEEEECCC-
Confidence 999999999999999999 99999999 999999876 789999999999 99999988753 34 78887
Q ss_pred CCceeeeEEEEEeecCCCceeeEEEEEE--C-C--EEEeeeeeecceEEEeeecCceeeeEEEEEeeccCCCceEeEEEE
Q 011170 404 DEGLRFNVIRIQEAIGLGQRIKRHEIFV--D-G--KLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLISSIGL 478 (492)
Q Consensus 404 ~~~~~fn~v~l~E~i~~GQRV~~~~v~~--d-G--~~v~~gttIG~kri~r~~~~~V~~~~lRi~I~~s~~~P~I~~~~v 478 (492)
+++||+|+|+|+|.+||||++|+|++ | | ++|++|||||||||++| + +|++++|||+|+++++.|+|++|+|
T Consensus 400 --~~~~n~v~IqE~i~~gqRV~~y~Ve~~~dgg~W~~va~gttiG~kri~~f-~-~v~ar~VRl~I~~s~~~p~Ise~~v 475 (478)
T 3ues_A 400 --PTTINAIVIEEAIEHGQRIEHLRVTGALPDGTERVLGQAGTVGYRRILRF-D-DVEVSSVTLHVDGSRLAPMISRAAA 475 (478)
T ss_dssp --EEEEEEEEEEECGGGCCCEEEEEEEEECTTSCEEEEEEESCCTTCEEEEE-E-EEEEEEEEEEEEEESSSCCEEEEEE
T ss_pred --CcEEEEEEEeecccCCCceEEEEEEEEeCCCCEEEEEeccccCceEEEEe-C-CeeeEEEEEEEeccCCCeEEEEEEE
Confidence 67999999999999999999999999 5 4 88999999999999999 6 8999999999999999999999999
Q ss_pred Ee
Q 011170 479 HF 480 (492)
Q Consensus 479 y~ 480 (492)
|+
T Consensus 476 Y~ 477 (478)
T 3ues_A 476 VR 477 (478)
T ss_dssp EC
T ss_pred Ee
Confidence 96
|
| >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* | Back alignment and structure |
|---|
| >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A* | Back alignment and structure |
|---|
| >4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* | Back alignment and structure |
|---|
| >3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A* | Back alignment and structure |
|---|
| >4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} | Back alignment and structure |
|---|
| >4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A* | Back alignment and structure |
|---|
| >1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A | Back alignment and structure |
|---|
| >2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A* | Back alignment and structure |
|---|
| >4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* | Back alignment and structure |
|---|
| >2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* | Back alignment and structure |
|---|
| >2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A | Back alignment and structure |
|---|
| >3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} | Back alignment and structure |
|---|
| >2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A | Back alignment and structure |
|---|
| >4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A | Back alignment and structure |
|---|
| >3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A | Back alignment and structure |
|---|
| >2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} | Back alignment and structure |
|---|
| >1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15 | Back alignment and structure |
|---|
| >2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A | Back alignment and structure |
|---|
| >2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} | Back alignment and structure |
|---|
| >3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A | Back alignment and structure |
|---|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
| >4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A | Back alignment and structure |
|---|
| >2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A | Back alignment and structure |
|---|
| >3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 | Back alignment and structure |
|---|
| >1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 | Back alignment and structure |
|---|
| >2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A | Back alignment and structure |
|---|
| >2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A* | Back alignment and structure |
|---|
| >2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A* | Back alignment and structure |
|---|
| >2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A | Back alignment and structure |
|---|
| >3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A | Back alignment and structure |
|---|
| >2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 | Back alignment and structure |
|---|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
| >2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
| >2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A | Back alignment and structure |
|---|
| >2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} | Back alignment and structure |
|---|
| >2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* | Back alignment and structure |
|---|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
| >2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A* | Back alignment and structure |
|---|
| >4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H | Back alignment and structure |
|---|
| >2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A | Back alignment and structure |
|---|
| >2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* | Back alignment and structure |
|---|
| >4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H | Back alignment and structure |
|---|
| >1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 | Back alignment and structure |
|---|
| >1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
| >1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 | Back alignment and structure |
|---|
| >7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A | Back alignment and structure |
|---|
| >2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A* | Back alignment and structure |
|---|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A | Back alignment and structure |
|---|
| >2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* | Back alignment and structure |
|---|
| >3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A | Back alignment and structure |
|---|
| >4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A | Back alignment and structure |
|---|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
| >1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* | Back alignment and structure |
|---|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* | Back alignment and structure |
|---|
| >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A | Back alignment and structure |
|---|
| >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* | Back alignment and structure |
|---|
| >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} | Back alignment and structure |
|---|
| >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* | Back alignment and structure |
|---|
| >1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 | Back alignment and structure |
|---|
| >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} | Back alignment and structure |
|---|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
| >3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} | Back alignment and structure |
|---|
| >3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} | Back alignment and structure |
|---|
| >3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* | Back alignment and structure |
|---|
| >3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* | Back alignment and structure |
|---|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
| >2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* | Back alignment and structure |
|---|
| >2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* | Back alignment and structure |
|---|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
| >4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* | Back alignment and structure |
|---|
| >4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A* | Back alignment and structure |
|---|
| >3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* | Back alignment and structure |
|---|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
| >1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* | Back alignment and structure |
|---|
| >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 | Back alignment and structure |
|---|
| >2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* | Back alignment and structure |
|---|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
| >1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* | Back alignment and structure |
|---|
| >3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* | Back alignment and structure |
|---|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} | Back alignment and structure |
|---|
| >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A | Back alignment and structure |
|---|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
| >3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A* | Back alignment and structure |
|---|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
| >3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A* | Back alignment and structure |
|---|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
| >3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A* | Back alignment and structure |
|---|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
| >1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* | Back alignment and structure |
|---|
| >4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} | Back alignment and structure |
|---|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 492 | ||||
| d1hl9a2 | 350 | c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, ca | 6e-52 |
| >d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Putative alpha-L-fucosidase, catalytic domain domain: Putative alpha-L-fucosidase, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 177 bits (450), Expect = 6e-52
Identities = 60/284 (21%), Positives = 100/284 (35%), Gaps = 49/284 (17%)
Query: 72 ENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRG 131
+ ++F D +W + +AG +I T KHHDGFCLW +K+T+ + K
Sbjct: 89 KFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPK---R 145
Query: 132 DVVQELVNAAKARGVDVGLYLSP-----WDRHDPRYGHDLQ--------YNEYYLAQLQE 178
D+V +L A + G+ G+Y S + RY DL Y +Y Q+ E
Sbjct: 146 DLVGDLAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVME 205
Query: 179 LLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKG 238
L+ Y G ++ Y F ++ N + + RW
Sbjct: 206 LVDLYLPDVLWNDMGWPEKGKEDLKYLFAYYY----------NKHPEGSVNDRWGVPHWD 255
Query: 239 FAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETP--- 295
F + E I + ++++E P
Sbjct: 256 FKTAEYH--------------------VNYPGDLPGYKWEFTRGIGLSFGYNRNEGPEHM 295
Query: 296 KKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFG 339
+ +L+ + V + +LLNV P G I + +RL G
Sbjct: 296 LSVEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLG 339
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| d1hl9a2 | 350 | Putative alpha-L-fucosidase, catalytic domain {The | 100.0 | |
| d1tvga_ | 136 | Placental protein 25, pp25 {Human (Homo sapiens) [ | 98.85 | |
| d1w8oa2 | 142 | Sialidase, C-terminal domain {Micromonospora virid | 98.76 | |
| d1k12a_ | 158 | Fucose binding lectin {European eel (Anguilla angu | 98.71 | |
| d1k3ia2 | 162 | Galactose oxidase, N-terminal domain {Fungi (Fusar | 98.64 | |
| d1jhja_ | 161 | APC10/DOC1 subunit of the anaphase-promoting compl | 98.54 | |
| d1gqpa_ | 194 | APC10/DOC1 subunit of the anaphase-promoting compl | 98.43 | |
| d2qqia1 | 156 | C2 domain of factor VIII {Human (Homo sapiens) [Ta | 98.09 | |
| d2qqia2 | 155 | B1 domain of neuropilin-1 {Human (Homo sapiens) [T | 98.03 | |
| d1sddb3 | 162 | C2 domain of factor V {Cow (Bos taurus) [TaxId: 99 | 97.65 | |
| d1czsa_ | 160 | C2 domain of factor V {Human (Homo sapiens) [TaxId | 97.42 | |
| d1d7pm_ | 159 | C2 domain of factor VIII {Human (Homo sapiens) [Ta | 97.26 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 96.01 | |
| d7a3ha_ | 300 | Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId | 95.74 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 95.59 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 95.01 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 94.9 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 94.12 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 93.98 | |
| d1wkya2 | 297 | Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 | 93.96 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 93.66 | |
| d1egza_ | 291 | Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: | 93.43 | |
| d1tvna1 | 293 | Endoglucanase Cel5a {Pseudoalteromonas haloplankti | 93.22 | |
| d1bqca_ | 302 | Beta-mannanase {Thermomonospora fusca [TaxId: 2021 | 91.46 | |
| d1uasa2 | 273 | Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | 91.32 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 91.01 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 90.67 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 90.5 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 90.14 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 90.13 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 89.84 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 89.41 | |
| d1r46a2 | 292 | Melibiase {Human (Homo sapiens) [TaxId: 9606]} | 89.16 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 89.05 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 88.51 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 87.7 | |
| d1szna2 | 314 | Melibiase {Trichoderma reesei [TaxId: 51453]} | 86.81 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 86.52 | |
| d2vzsa5 | 339 | Exochitosanase CsxA {Amycolatopsis orientalis [Tax | 86.21 | |
| d1bhga3 | 304 | beta-Glucuronidase, domain 3 {Human (Homo sapiens) | 80.96 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 80.93 |
| >d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Putative alpha-L-fucosidase, catalytic domain domain: Putative alpha-L-fucosidase, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.7e-80 Score=632.45 Aligned_cols=282 Identities=23% Similarity=0.381 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCCCCCCHhhHhhhcCceEEEEEecccccCC----------------------CCCCCC------C-----
Q 011170 25 RQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTD----------------------SEWGTG------N----- 71 (492)
Q Consensus 25 ~~~~~~~~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~----------------------~EW~~g------~----- 71 (492)
+|+|+|+++..+++|.| |+|+|||||||||+||+++ .||+.. .
T Consensus 1 ~y~p~w~sl~~~~~p~W----f~dakfGmFiHWG~YSvp~~~~~~~~~~~~~~~~~~~~~~~~EW~~~~~~~~~~~~~~~ 76 (350)
T d1hl9a2 1 RYKPDWESLREHTVPKW----FDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAEWYENSLRIKESPTWEY 76 (350)
T ss_dssp CCCSSHHHHTTSCCCHH----HHHHCEEEEECCSGGGTTCCCCC---------CCTTTTCCCGGGHHHHHHSTTSHHHHH
T ss_pred CCCCCcHHHhCCCChhH----HhcCceEEEEEeccccccccCCCcccccccccccccccCCchHHhhhhccCCCCcchhh
Confidence 58999999999999988 9999999999999999874 356321 0
Q ss_pred ------------CCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHH
Q 011170 72 ------------ENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVN 139 (492)
Q Consensus 72 ------------~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~ 139 (492)
.-+++|||++|||+|||++||+|||||+|||||||||||||||++|+||++++| ++||||+||++
T Consensus 77 h~~~yg~~~~Y~~~~~~Fnp~~fDa~~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~~~---~~rDiv~el~~ 153 (350)
T d1hl9a2 77 HVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRG---PKRDLVGDLAK 153 (350)
T ss_dssp HHHHTCTTCCGGGHHHHCCCTTCCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTST---TCSCHHHHHHH
T ss_pred hhhcCCCCccHHHHHHHhhcccCCHHHHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcCCC---CCCchHHHHHH
Confidence 114689999999999999999999999999999999999999999999988754 57999999999
Q ss_pred HHHHcCCeeEEEeCC-CCCCCCCCCC------------CchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccH
Q 011170 140 AAKARGVDVGLYLSP-WDRHDPRYGH------------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYF 206 (492)
Q Consensus 140 Acrk~Glk~G~Y~S~-wD~~~~~yg~------------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~ 206 (492)
||||+|||||+|||+ +||+++.+.. ...|++|+++||+||+++||| +.+||||++... ..++.
T Consensus 154 A~rk~Glk~G~YyS~~~dw~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Ql~EL~~~Y~p-~~~w~D~~~~~~---~~~~~ 229 (350)
T d1hl9a2 154 AVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLP-DVLWNDMGWPEK---GKEDL 229 (350)
T ss_dssp HHHHTTCEECEEECCSCCTTSCCSCCCSGGGGGTCSCCSHHHHHHHHHHHHHHHHHHCC-SCEEECSCCCGG---GTTHH
T ss_pred HHHhcCCceeEEeccccccccccCCCCCcchhcccCccchHHHHHHHHHHHHHHhccCC-ceEEeccccccc---chhhH
Confidence 999999999999995 7898775431 247999999999999999998 789999986542 34567
Q ss_pred HHHHHHHHhhCCCeeEecCCCCCcccccCCCCCCCcceeeeccCCccccCCCccccccccCCCCCCCCccccceeecCCC
Q 011170 207 TDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKG 286 (492)
Q Consensus 207 ~~~~~~i~~~qP~~vi~~~~g~d~rw~gne~G~~~~~~w~~~~~~~~~~G~~~~~~~~~~g~~~~~~w~P~E~d~~i~~~ 286 (492)
.+++++++++||+++|++ ||.....+.. + ...+.+.+......|||+|++|+.+
T Consensus 230 ~~~~~~i~~~qp~~~i~~------r~~~~~~~~~------~--------------~~~~~~~p~~~~~~~WE~~~ti~~~ 283 (350)
T d1hl9a2 230 KYLFAYYYNKHPEGSVND------RWGVPHWDFK------T--------------AEYHVNYPGDLPGYKWEFTRGIGLS 283 (350)
T ss_dssp HHHHHHHHHHCTTCCBCS------CSSSSCCSSE------E--------------EC--------CCSSCEEEEEESSSC
T ss_pred HHHHHHHHHhCCCCcccc------eeccCCCCCc------c--------------cccccCCCCCcccccceeeeeccCC
Confidence 889999999999999865 3432221110 0 0111233445566789999999999
Q ss_pred CCCCCCC---CCCCHHHHHHHHHhhhccCceEEEccCCCCCCCCCHHHHHHHHHHHHHHH
Q 011170 287 WFWHKSE---TPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAID 343 (492)
Q Consensus 287 Wfy~~~~---~~ks~~~Li~~l~~~V~rngnlLLNigP~~dG~Ip~~~~~~L~e~G~wl~ 343 (492)
|||+.++ .+||+++||++|+++|||||||||||||++||+||+.++++|++||+||+
T Consensus 284 Wgy~~~d~~~~~ks~~~li~~l~~~VskggnlLLNVgP~~dG~Ip~~~~~~L~~iG~Wl~ 343 (350)
T d1hl9a2 284 FGYNRNEGPEHMLSVEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLR 343 (350)
T ss_dssp SSCCSCC----CCCHHHHHHHHHHHHHTTEEEEEEECCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCCHHHHHHHHHHHhcCCceEEEeeCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 9999875 58999999999999999999999999999999999999999999999996
|
| >d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
| >d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]} | Back information, alignment and structure |
|---|
| >d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1czsa_ b.18.1.2 (A:) C2 domain of factor V {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
| >d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} | Back information, alignment and structure |
|---|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
|---|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
| >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
| >d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
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| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
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| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
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| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
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| >d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
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| >d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
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| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
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| >d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
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| >d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
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