Citrus Sinensis ID: 011181

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
Protein Sequence
MVRYSEAAPRIQTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Secondary Structure (PSIPRED)
cccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEcccccccccEEEEEEEEEccccccccccccEEEEEEEEEEEccccEEEEccccccccccccccEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccEEccccEEEEEEEccccccccEEEEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEcccEEEEEEccccccccEEEEcEEEEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccEEEccccccEEEEEEEcccccccccccHEEEEEEEEEEEEccEEEEEcccccccccHHHHHHHHccccEEEEEEccccccccccccccccccccEEEEEEEEEccccccHHHHHccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHcccccccccccccccccHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccccEEEccccEEEEEEEccccccEEEEEEEEEEEEEEEEcHHcccccccccccEEEEEcccEEEHHcccccEEEEEccccccccccccEEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEEEcccccccccccccccEEcccccEEcc
Coil and Loop (DISEMBL)
mvryseaapriqtkKRFCIFVIWLCYLLYTFYILVMRINMLFVELLfffpgefafldISASKLisnqivssdatksyvirtelpsiippsyrgttIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQkgngllteenqndgivpattiQMDIYWkemdgdsewsrandiydgveegyessrdeissvssynpskenLLKTFgsslslqsstarsstkdipaFEGELMRLssnvalpqlsaaevlydssadvispnksaavvspsqqqkltkpadditgaspspqagvvepaasegfirgrsynirmddqvllrfspknsestyyfSDMIGGTLTFFHEEGARRCLEVLITLETsetinrwfvhpsrrnsptitkiqSDHHEVVADLVQTSFlfsipmdgpmsfstpYVSVQWALRFEFlttpkhvqwtryehplliegrdksewvlpitvhappsgapaghnrndkhfsleplwvrt
Flexible Loop (DISEMBL)
mvryseaapriqtkkrfCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIvssdatksyvirtelpsiippsyrgtTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKgngllteenqndgivpatTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKsaavvspsqqqkLTKPADDitgaspspqagvvepAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETsetinrwfvhpsrrnSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPpsgapaghnrndkhfsleplwvrt
Low Complexity Region (SEG)
MVRYSEAAPRIQTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYEssrdeissvssYNPSKENLLKTFGsslslqsstarsstKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Disordered region (IsUnstruct)
***********QTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIY*****************************************************************************************************************************FIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRR**PTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVH**************************
Disordered Region (DISOPRED)
**********IQTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSAR********************EARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWK***************************************************************************************************************************************************NIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSE*********************SDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTP*******************SEWVLPITVHA******************EPLWVR*
Disordered Region (DISEMBL)
********PRIQTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEE**************YNPSKENLLKTFGS*************KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPN*******************DITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Disordered Region (DISPRO)
*******APRIQTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVE****************************************************MRLSSNVALPQLSAAEV*****AD**********************************************IRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAG*N**DKHFSLEPLWVRT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRYSEAAPRIQTKKRFCIFVIWLCYLLYTFYILVMRINMLFVELLFFFPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	491	2.2.26 [Sep-21-2011]
Q92546	391	Retrograde Golgi transpor	yes	no	0.248	0.312	0.288	8e-06
Q2T9P3	394	Retrograde Golgi transpor	yes	no	0.250	0.312	0.289	1e-05
Q8BHT7	391	Retrograde Golgi transpor	yes	no	0.248	0.312	0.288	1e-05

>sp|Q92546|RGP1_HUMAN Retrograde Golgi transport protein RGP1 homolog OS=Homo sapiens GN=RGP1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)

Query: 334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNS---PTITKI- 389
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR +   P+++ + 
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGAGGVPSVSHVT 285

Query: 390 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT-------------P 436
            + H E      +TSF   IP+     F T  VS++W L FEF+T+             P
Sbjct: 286 HARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQP 345

Query: 437 KHVQWTRYEH-PLLIEGRDKSEWVLPITV 464
           +   WT  E  P+     D   W LPI V
Sbjct: 346 EPTTWTGPEQVPV-----DTFSWDLPIKV 369

Homo sapiens (taxid: 9606)

>sp|Q2T9P3|RGP1_BOVIN Retrograde Golgi transport protein RGP1 homolog OS=Bos taurus GN=RGP1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 29/152 (19%)

Query: 334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRR----NSPTITKI 389
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR     +P+++ I
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQYSVSLQTEERVQPEY---QRRRGAGGAPSVSHI 284

Query: 390 -QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT------------- 435
             + H E      +TSF   IP+     F T  VS++W L FEF+T+             
Sbjct: 285 THARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQ 344

Query: 436 PKHVQWTRYEH-PLLIEGRDKSEWVLPITVHA 466
           P+   WT  E  P+     D   W LPI   A
Sbjct: 345 PEPATWTGPEQVPV-----DTFSWDLPIKPEA 371

Bos taurus (taxid: 9913)

>sp|Q8BHT7|RGP1_MOUSE Retrograde Golgi transport protein RGP1 homolog OS=Mus musculus GN=Rgp1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)

Query: 334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN---SPTITKI- 389
           +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR    +P+++ + 
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGTGVAPSVSHVT 285

Query: 390 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT-------------P 436
            + H E      +TSF   IP+     F T  VS++W L FEF+T+             P
Sbjct: 286 HARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQP 345

Query: 437 KHVQWTRYEH-PLLIEGRDKSEWVLPITV 464
           +   WT  E  P+     D   W LPI V
Sbjct: 346 EPATWTGPEQVPV-----DTFSWDLPIKV 369

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
225423763	552	PREDICTED: uncharacterized protein LOC10	0.887	0.789	0.752	0.0
224096556	533	predicted protein [Populus trichocarpa]	0.883	0.814	0.740	0.0
255554424	528	conserved hypothetical protein [Ricinus	0.849	0.789	0.712	0.0
449438811	538	PREDICTED: uncharacterized protein LOC10	0.896	0.817	0.702	1e-178
449476616	427	PREDICTED: uncharacterized protein LOC10	0.841	0.967	0.713	1e-175
357513087	529	Retrograde Golgi transport protein RGP1-	0.881	0.818	0.679	1e-171
297847350	527	hypothetical protein ARALYDRAFT_891939 [	0.883	0.823	0.682	1e-167
22330146	532	uncharacterized protein [Arabidopsis tha	0.883	0.815	0.682	1e-166
356522946	576	PREDICTED: uncharacterized protein LOC10	0.881	0.751	0.644	1e-166
8569091	506	Contains a legume lectins beta domain PF	0.828	0.804	0.693	1e-160

>gi|225423763|ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera] gi|297737934|emb|CBI27135.3| unnamed protein product [Vitis vinifera]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/444 (75%), Positives = 374/444 (84%), Gaps = 8/444 (1%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  FLD +   ++SNQIVS+ A K+YV RTELPSI+PPSYRG TIRY YYV+ TLS RW
Sbjct: 114 GEHTFLDCATPSIVSNQIVSAGAVKTYVARTELPSIVPPSYRGATIRYFYYVRCTLSGRW 173

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           L+LENG + RES++DL ++EAR+PLQIWVTQK +GLL EE  NDGIVP T IQMD+YWKE
Sbjct: 174 LVLENGHSPRESRKDLIELEARIPLQIWVTQKTSGLLIEEGHNDGIVPNTAIQMDVYWKE 233

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           MDGDS+W RAN+ YDGVEEGYESSRDE+SSVSSYNP KEN+ K+FGSSLSL S +ARSST
Sbjct: 234 MDGDSDWVRANETYDGVEEGYESSRDEVSSVSSYNPMKENIHKSFGSSLSLHSFSARSST 293

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKP--AD 288
              P  EGE   +SS VALP+LS AEV+ DSS D +S  KS+A +SPS+Q+K TKP  AD
Sbjct: 294 ---PYLEGERTSISSYVALPRLSVAEVINDSSLDALSSQKSSANLSPSEQRKDTKPISAD 350

Query: 289 DITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLT 348
           D  G S  P  G  +PAASEGFIRGRSYNIR+DDQVLLRFSPKNS+STYYFSDMIGGTLT
Sbjct: 351 DEAGVSTIP--GTDDPAASEGFIRGRSYNIRLDDQVLLRFSPKNSDSTYYFSDMIGGTLT 408

Query: 349 FFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFS 408
           FFHEEGARRCLEV ITLE+SET+NR F HPSRRNS TITK+QSDHHEVVADLVQTSFLFS
Sbjct: 409 FFHEEGARRCLEVSITLESSETVNRRFAHPSRRNSLTITKVQSDHHEVVADLVQTSFLFS 468

Query: 409 IPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP 468
           IPMDGPMSFSTP+VSVQWALRFEF TTPK+V  TRYEHPLLIEGRDK EWVLPITVHA P
Sbjct: 469 IPMDGPMSFSTPHVSVQWALRFEFFTTPKNVDLTRYEHPLLIEGRDKCEWVLPITVHATP 528

Query: 469 SG-APAGHNRNDKHFSLEPLWVRT 491
           SG A A H RNDK F+LEPLWVR+
Sbjct: 529 SGTAAAAHTRNDKSFTLEPLWVRS 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096556|ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|222853559|gb|EEE91106.1| predicted protein [Populus trichocarpa]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/443 (74%), Positives = 377/443 (85%), Gaps = 9/443 (2%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  F+D S S ++SNQIVSS ATK+YV+RT LPSIIPPSYRG TIRY+YYV+STLS + 
Sbjct: 98  GEHVFMDCSTSSIVSNQIVSSGATKTYVVRTLLPSIIPPSYRGATIRYIYYVESTLSGQQ 157

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           L+L+N  + RES +DL Q+E R+PLQIWV QKGNGL+ EE Q+DGIVP TTIQ+DIYWKE
Sbjct: 158 LMLDNTNSHRESSKDLLQLEDRIPLQIWVAQKGNGLIVEEGQSDGIVPPTTIQLDIYWKE 217

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           MDGD+EW+RAND+ DGVEEG+ES RDEISSVSSYNP++E++ KTFGSSLSLQS  ARSS 
Sbjct: 218 MDGDNEWARANDLDDGVEEGHESLRDEISSVSSYNPNRESIHKTFGSSLSLQS-VARSSN 276

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDI 290
           KD    EG    LS+ +ALP+LSAAEVLYDS AD+  P+KS+A+V PSQQ +     DD+
Sbjct: 277 KDASFTEGGRRSLST-LALPRLSAAEVLYDSGADMAEPDKSSAMVFPSQQLR-----DDM 330

Query: 291 TGASPSPQAGVV--EPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLT 348
            G S +P    V  EPAASEGFIRGRSYNIRMDD VLLRFSP+NS+STYYFSDMIGGTLT
Sbjct: 331 AGVSYTPGTVSVNNEPAASEGFIRGRSYNIRMDDHVLLRFSPRNSDSTYYFSDMIGGTLT 390

Query: 349 FFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFS 408
           FFHEEGA++CLEV ITLETSET++R ++HPSR+NSPTITK+QSDHHEVVADLVQTSFLFS
Sbjct: 391 FFHEEGAKKCLEVSITLETSETVSRRYIHPSRKNSPTITKVQSDHHEVVADLVQTSFLFS 450

Query: 409 IPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP 468
           IPMDGPMSFST +VSVQW LRFEF TTPK+V WTRYEHPLLIEGRDKSEWVLPITVHAPP
Sbjct: 451 IPMDGPMSFSTSHVSVQWVLRFEFFTTPKNVDWTRYEHPLLIEGRDKSEWVLPITVHAPP 510

Query: 469 SGAPAGHNRNDKHFSLEPLWVRT 491
             A A H+RN+K FSLEPLWVRT
Sbjct: 511 PRASAAHSRNEKGFSLEPLWVRT 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554424|ref|XP_002518251.1| conserved hypothetical protein [Ricinus communis] gi|223542598|gb|EEF44137.1| conserved hypothetical protein [Ricinus communis]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/442 (71%), Positives = 358/442 (80%), Gaps = 25/442 (5%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  F+  S   L+SNQI+SS A+KSYV+R ELPSI+PP++RG+TIRY YYVK TL  RW
Sbjct: 111 GEHVFMVSSIPSLVSNQILSSAASKSYVVRVELPSILPPTFRGSTIRYFYYVKGTLCGRW 170

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           L LENG + RES +DL +++AR+PL IWVTQK NGLL EE+Q+DGIVPATT+Q+D+YWK 
Sbjct: 171 LTLENGHSHRESSKDLIELDARVPLNIWVTQKSNGLLMEEDQSDGIVPATTLQLDVYWKA 230

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           MDGDSEW+R ND  DGVEEGY+SSRDEISSVSSYNPSKE++ +TFGSSLSLQS  AR+S 
Sbjct: 231 MDGDSEWARVNDNDDGVEEGYDSSRDEISSVSSYNPSKESMHRTFGSSLSLQSFAARTS- 289

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKP-ADD 289
                       LSSNV  P+LS AEVL+D SADV            SQQQ + KP  +D
Sbjct: 290 ------------LSSNVGFPRLSVAEVLHDPSADV-----------SSQQQNIVKPQTED 326

Query: 290 ITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTF 349
           + G S +   G  E +ASEGFIRGRSYNIRMDDQVLLRFSPKNS+S YYFSDMIGGTLTF
Sbjct: 327 VVGESSAHGIGTNEASASEGFIRGRSYNIRMDDQVLLRFSPKNSDSNYYFSDMIGGTLTF 386

Query: 350 FHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSI 409
           FHEEG RRCLEV ITLE SETI+R FVH SRRN+P ITK+QSDHHEVVADLVQTSFLFS+
Sbjct: 387 FHEEGCRRCLEVSITLEISETISRRFVHSSRRNAPIITKVQSDHHEVVADLVQTSFLFSV 446

Query: 410 PMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPS 469
           P+DGPMSFSTP+VSVQWALRFEF TTPK+V WTRYEHPLL+EGRDKSEWVLPITVHAPP 
Sbjct: 447 PLDGPMSFSTPHVSVQWALRFEFYTTPKNVDWTRYEHPLLVEGRDKSEWVLPITVHAPPP 506

Query: 470 GAPAGHNRNDKHFSLEPLWVRT 491
           GA A H R+ KHFSLEPLWVRT
Sbjct: 507 GALAAHTRDAKHFSLEPLWVRT 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438811|ref|XP_004137181.1| PREDICTED: uncharacterized protein LOC101218523 [Cucumis sativus]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/443 (70%), Positives = 363/443 (81%), Gaps = 3/443 (0%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  F+D S   ++S+QI+SS A KSYV+R+ LP+ IPPSY+G TIRY+YYVKSTL  RW
Sbjct: 97  GEHIFMDCSVQSIVSSQIISSGAMKSYVVRSTLPTCIPPSYKGATIRYMYYVKSTLLGRW 156

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           L  ENG + +ES +D  ++EARLPLQ+WVTQK NG+L EE QNDG + + + QMD++WKE
Sbjct: 157 LSQENGRSHKESPKDQIEMEARLPLQVWVTQKTNGMLMEEGQNDGDLSSLSFQMDVFWKE 216

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           M+ D++W RANDIYDG +EGY+SSRDEISSVSSYNP +E   +TFGSSLSLQSS  RSS 
Sbjct: 217 MESDTDWIRANDIYDGTDEGYDSSRDEISSVSSYNPMREPFHRTFGSSLSLQSSAGRSSI 276

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTK--PAD 288
           K  P  EGE + LSSNVA P++S AEVLY+S ADV SP KS A VSPSQ     K    D
Sbjct: 277 KIAPFIEGERLSLSSNVARPRVSVAEVLYES-ADVASPQKSFAAVSPSQVLNFEKNQSTD 335

Query: 289 DITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLT 348
           D  GA+ SP+   +EP ASEGFIRGRSYNIR+DDQVLLRF PKNS+STYYFSDMIGGTLT
Sbjct: 336 DDAGAATSPRPKTIEPVASEGFIRGRSYNIRVDDQVLLRFCPKNSDSTYYFSDMIGGTLT 395

Query: 349 FFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFS 408
           FFHEEG RRCLE+ ITLETSET++R F+HPSRRNSPTI K+QSDH+EVVADL+QTSFLFS
Sbjct: 396 FFHEEGTRRCLELSITLETSETVSRRFIHPSRRNSPTIVKVQSDHYEVVADLIQTSFLFS 455

Query: 409 IPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP 468
           IPMDGPMSFSTP+VS+QWALRFEF TTPK+V WTRYEHPLLIEGR+KSEWVLPITVHAPP
Sbjct: 456 IPMDGPMSFSTPHVSLQWALRFEFFTTPKNVDWTRYEHPLLIEGREKSEWVLPITVHAPP 515

Query: 469 SGAPAGHNRNDKHFSLEPLWVRT 491
           S A    NRND+ FSLEPLW+ +
Sbjct: 516 SSAATAQNRNDRPFSLEPLWMHS 538

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476616|ref|XP_004154786.1| PREDICTED: uncharacterized protein LOC101223298 [Cucumis sativus]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/416 (71%), Positives = 344/416 (82%), Gaps = 3/416 (0%)

Query: 78  VIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQI 137
           V+R+ LP+ IPPSY+G TIRY+YYVKSTL  RWL  ENG + +ES +D  ++EARLPLQ+
Sbjct: 13  VVRSTLPTCIPPSYKGATIRYMYYVKSTLLGRWLSQENGRSHKESPKDQIEMEARLPLQV 72

Query: 138 WVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDE 197
           WVTQK NG+L EE QNDG + + + QMD++WKEM+ D++W RANDIYDG +EGY+SSRDE
Sbjct: 73  WVTQKTNGMLMEEGQNDGDLSSLSFQMDVFWKEMESDTDWIRANDIYDGTDEGYDSSRDE 132

Query: 198 ISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEV 257
           ISSVSSYNP +E   +TFGSSLSLQSS  RSS K  P  EGE + LSSNVA P++S AEV
Sbjct: 133 ISSVSSYNPMREPFHRTFGSSLSLQSSAGRSSIKIAPFIEGERLSLSSNVARPRVSVAEV 192

Query: 258 LYDSSADVISPNKSAAVVSPSQQQKLTK--PADDITGASPSPQAGVVEPAASEGFIRGRS 315
           LY+S ADV SP KS A VSPSQ     K    DD  GA+ SP+   +EP ASEGFIRGRS
Sbjct: 193 LYES-ADVASPQKSFAAVSPSQVLNFEKNQSTDDDAGAATSPRPKTIEPVASEGFIRGRS 251

Query: 316 YNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWF 375
           YNIR+DDQVLLRF PKNS+STYYFSDMIGGTLTFFHEEG RRCLE+ ITLETSET++R F
Sbjct: 252 YNIRVDDQVLLRFCPKNSDSTYYFSDMIGGTLTFFHEEGTRRCLELSITLETSETVSRRF 311

Query: 376 VHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT 435
           +HPSRRNSPTI K+QSDH+EVVADL+QTSFLFSIPMDGPMSFSTP+VS+QWALRFEF TT
Sbjct: 312 IHPSRRNSPTIVKVQSDHYEVVADLIQTSFLFSIPMDGPMSFSTPHVSLQWALRFEFFTT 371

Query: 436 PKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT 491
           PK+V WTRYEHPLLIEGR+KSEWVLPITVHAPPS A    NRND+ FSLEPLW+ +
Sbjct: 372 PKNVDWTRYEHPLLIEGREKSEWVLPITVHAPPSSAATAQNRNDRPFSLEPLWMHS 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513087|ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like protein [Medicago truncatula] gi|355520854|gb|AET01308.1| Retrograde Golgi transport protein RGP1-like protein [Medicago truncatula]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/443 (67%), Positives = 362/443 (81%), Gaps = 10/443 (2%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  F+D S   L++NQI+++  +KSYV+RT LPSIIPPSY+G+ IRYLYYVKS ++  W
Sbjct: 95  GEHVFVDSSTPILVANQIINAGTSKSYVVRTMLPSIIPPSYKGSNIRYLYYVKSAITGGW 154

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           LILENG ++ E   D+T +E R+PLQIWV QK +G   +    D IVP TT+Q+DI+WKE
Sbjct: 155 LILENGQSRTEPTNDVTDLEVRIPLQIWVNQKSSGFPLD----DDIVPLTTVQLDIFWKE 210

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           MDGD++W RANDIYDGVE+GY+SSRD+ISSVSSYNP KEN+++ FGSSLSL+SS+ARS  
Sbjct: 211 MDGDADWVRANDIYDGVEDGYDSSRDDISSVSSYNPMKENMVRGFGSSLSLRSSSARSLN 270

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTK--PAD 288
           +     EG    LSSN+ALP+LS AEVL D+ AD +S  KS  +VSP++QQK  K   A+
Sbjct: 271 R----LEGHRTSLSSNIALPRLSVAEVLSDTGADALSTQKSFTMVSPTEQQKFGKQFSAE 326

Query: 289 DITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLT 348
           D  G S SP+AG VE  +SEGFIRGRSYNIR+DDQVLL+FSPKNS+STYYFSDMIGGTLT
Sbjct: 327 DDAGVSSSPEAGPVESLSSEGFIRGRSYNIRLDDQVLLKFSPKNSDSTYYFSDMIGGTLT 386

Query: 349 FFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFS 408
           FFHE+G RRCLE+ +TLETSETINR FVHPSRRNSPTITK+QSDHHEVVADL QTSFLFS
Sbjct: 387 FFHEQGGRRCLEISVTLETSETINRRFVHPSRRNSPTITKVQSDHHEVVADLAQTSFLFS 446

Query: 409 IPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP 468
           +P+DGPM+FSTP+VSVQW LRFEF TTPK V WT+YEHPLLIEGR+K+EWVLPITVHAPP
Sbjct: 447 VPVDGPMTFSTPHVSVQWVLRFEFYTTPKFVDWTKYEHPLLIEGREKTEWVLPITVHAPP 506

Query: 469 SGAPAGHNRNDKHFSLEPLWVRT 491
              P   +RN+K FSL+P+WV T
Sbjct: 507 PRTPTSGSRNEKLFSLDPMWVHT 529

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847350|ref|XP_002891556.1| hypothetical protein ARALYDRAFT_891939 [Arabidopsis lyrata subsp. lyrata] gi|297337398|gb|EFH67815.1| hypothetical protein ARALYDRAFT_891939 [Arabidopsis lyrata subsp. lyrata]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 301/441 (68%), Positives = 338/441 (76%), Gaps = 7/441 (1%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  FLD S   LISNQI+S  A  + ++R  LP IIPPSY+G T+RYLYY+KSTL  RW
Sbjct: 94  GEHIFLDSSTPSLISNQILSPGAKMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRW 153

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           + LEN    ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGIVP +TIQ DIYWKE
Sbjct: 154 MALENSQFYKDSTKDFIEVETRIPLQVWVIQKNNGLLLEEDQTDGIVPTSTIQTDIYWKE 213

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           MDGDSEW+RAND YD  E+GY+SSRDEISSVSSY P+K NL +TFGSSLSL S   R S 
Sbjct: 214 MDGDSEWTRANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFGSSLSLNSG-PRLSM 271

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDI 290
           KD    E E +  S  + L QLSAA V YDS  DV SP+KS+  V PSQQ K T  A   
Sbjct: 272 KDTSYVE-ERVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGA--- 327

Query: 291 TGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFF 350
            GAS SP+AG  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++STYYFSD IGGTLTFF
Sbjct: 328 -GASMSPEAGAKEPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFF 386

Query: 351 HEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIP 410
           HEEG RRCLEV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP
Sbjct: 387 HEEGTRRCLEVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIP 446

Query: 411 MDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSG 470
            DGPMSFSTP VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KSEWVLPITVHAPP  
Sbjct: 447 TDGPMSFSTPRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPR 506

Query: 471 APAGHNRNDKHFSLEPLWVRT 491
                 R DK F LEP W+R+
Sbjct: 507 TSGAQTRGDKFFGLEPSWIRS 527

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330146|ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana] gi|20268711|gb|AAM14059.1| unknown protein [Arabidopsis thaliana] gi|21689887|gb|AAM67504.1| unknown protein [Arabidopsis thaliana] gi|332194396|gb|AEE32517.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 301/441 (68%), Positives = 338/441 (76%), Gaps = 7/441 (1%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE  FLD S   LISNQI+S  A  + ++R  LP IIPPSY+G T+RYLYY+KSTL  RW
Sbjct: 99  GEHIFLDSSTPSLISNQILSPGAKMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRW 158

Query: 111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
           + LEN    ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGIVP +TIQ +IYWKE
Sbjct: 159 MALENSQFYKDSTQDFIEVETRIPLQVWVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKE 218

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSST 230
           MDGDSEW+RAND YD  E+GY+SSRDEISSVSSY P+K NL +TFGSSLSL S   R S 
Sbjct: 219 MDGDSEWTRANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFGSSLSLNSG-PRLSM 276

Query: 231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDI 290
           KD    E E +  S  + L QLSAA V YDS  DV SP+KS+  V PSQQ K T  A   
Sbjct: 277 KDTSYVE-ERVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGA--- 332

Query: 291 TGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFF 350
            GAS SP AG  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++STYYFSD IGGTLTFF
Sbjct: 333 -GASMSPGAGAREPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFF 391

Query: 351 HEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIP 410
           HEEG RRCLEV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP
Sbjct: 392 HEEGTRRCLEVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIP 451

Query: 411 MDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSG 470
            DGPMSFSTP VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KSEWVLPITVHAPP  
Sbjct: 452 TDGPMSFSTPRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPR 511

Query: 471 APAGHNRNDKHFSLEPLWVRT 491
                NR DK F LEP W+R+
Sbjct: 512 TSGAQNRGDKLFGLEPSWIRS 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522946|ref|XP_003530103.1| PREDICTED: uncharacterized protein LOC100812423 [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 307/476 (64%), Positives = 368/476 (77%), Gaps = 43/476 (9%)

Query: 51  GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
           GE AFL+ S   L++NQIV++ A+KSYV+RT+LPSIIPPSY+G++IRYLYY+KS L+  W
Sbjct: 105 GEHAFLECSTPVLVANQIVNAGASKSYVVRTQLPSIIPPSYKGSSIRYLYYIKSALTGEW 164

Query: 111 LILENGLTQRESKRDLTQV----------------------------------EARLPLQ 136
           +I ENG ++ E K D+T +                                  E R+PLQ
Sbjct: 165 IIYENGQSRAEIKNDVTDLCTVEERPESVSGCPLCFVVPVIVAAMLEMSWPLKEVRIPLQ 224

Query: 137 IWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRD 196
           +W+ QK +        +D IVP TT+Q+DI+WKEMDGD++W RAND+YDGVE+GY+SSRD
Sbjct: 225 LWINQKSSAF----PMDDDIVPLTTVQLDIFWKEMDGDADWIRANDMYDGVEDGYDSSRD 280

Query: 197 EISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAE 256
           +ISSVSSYNP +E+L + FGSSLSL+SS+ARS ++D    EG    LSSN+ALP+LS AE
Sbjct: 281 DISSVSSYNPMRESLHRGFGSSLSLRSSSARSLSRDASTLEGFRTSLSSNMALPRLSVAE 340

Query: 257 VLYDSSADVISPNKSAAVVSPSQQQKLTK--PADDITGASPSPQAGVVEPAASEGFIRGR 314
           VL DS ADV+S  KS A+VSP++QQKL K   A+D  G S SP+AG    AA EGFIRGR
Sbjct: 341 VLSDSGADVLSTQKSFAIVSPNEQQKLRKTFSAEDDVGVSSSPEAGATFSAA-EGFIRGR 399

Query: 315 SYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRW 374
           SYNIR+DDQVLL+FSP+NS+STYYFSDMIGGTLTFFHE GARRCLE+ ITLETSETINR 
Sbjct: 400 SYNIRLDDQVLLKFSPRNSDSTYYFSDMIGGTLTFFHE-GARRCLEISITLETSETINRR 458

Query: 375 FVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLT 434
           FVHPSRRNSPTITK+QSDHHEVVADLVQTSFLFSIPMDGPMSFST +VSVQW LRFEF T
Sbjct: 459 FVHPSRRNSPTITKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFT 518

Query: 435 TPKHVQWTRYEHPLLIEGRDKSEWVLPITVHA-PPSGAPAGHNRNDKHFSLEPLWV 489
           TPKHV W +YEHPLLIEGR+K+EWVLPITVHA PP GAPA   R++K FSL+P+WV
Sbjct: 519 TPKHVDWKKYEHPLLIEGREKTEWVLPITVHAPPPRGAPASGTRSEKLFSLDPMWV 574

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8569091|gb|AAF76436.1|AC015445_3 Contains a legume lectins beta domain PF|00139 [Arabidopsis thaliana]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/414 (69%), Positives = 322/414 (77%), Gaps = 7/414 (1%)

Query: 78  VIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQI 137
           ++R  LP IIPPSY+G T+RYLYY+KSTL  RW+ LEN    ++S +D  +VE R+PLQ+
Sbjct: 100 MVRAILPQIIPPSYKGATLRYLYYIKSTLCGRWMALENSQFYKDSTQDFIEVETRIPLQV 159

Query: 138 WVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDE 197
           WV QK NGLL EE+Q DGIVP +TIQ +IYWKEMDGDSEW+RAND YD  E+GY+SSRDE
Sbjct: 160 WVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKEMDGDSEWTRANDAYDSGEDGYDSSRDE 219

Query: 198 ISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEV 257
           ISSVSSY P+K NL +TFGSSLSL S   R S KD    E E +  S  + L QLSAA V
Sbjct: 220 ISSVSSY-PNKSNLNRTFGSSLSLNSG-PRLSMKDTSYVE-ERVGSSPKMMLSQLSAAVV 276

Query: 258 LYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYN 317
            YDS  DV SP+KS+  V PSQQ K T  A    GAS SP AG  EP  SEGF RGRSYN
Sbjct: 277 SYDSGTDVSSPHKSSNSVVPSQQPKQTNGA----GASMSPGAGAREPVPSEGFTRGRSYN 332

Query: 318 IRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVH 377
           IRMDDQVLLRFSPKN++STYYFSD IGGTLTFFHEEG RRCLEV +TLET ETINR FVH
Sbjct: 333 IRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFFHEEGTRRCLEVSVTLETLETINRRFVH 392

Query: 378 PSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPK 437
           PSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP DGPMSFSTP VSVQW LRFEFLTTPK
Sbjct: 393 PSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMSFSTPRVSVQWILRFEFLTTPK 452

Query: 438 HVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAPAGHNRNDKHFSLEPLWVRT 491
            V  +RYEHPLL+  R+KSEWVLPITVHAPP       NR DK F LEP W+R+
Sbjct: 453 SVDLSRYEHPLLVPEREKSEWVLPITVHAPPPRTSGAQNRGDKLFGLEPSWIRS 506

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
TAIR|locus:2031065	532	AT1G50120 "AT1G50120" [Arabido	0.883	0.815	0.639	4e-145
DICTYBASE|DDB_G0277397	713	DG1122 "E set domain-containin	0.221	0.152	0.357	2.6e-15
MGI|MGI:1915956	391	Rgp1 "RGP1 retrograde golgi tr	0.199	0.250	0.301	4.5e-07
ZFIN|ZDB-GENE-040718-352	386	rgp1 "RGP1 retrograde golgi tr	0.248	0.316	0.248	0.00011

TAIR|locus:2031065 AT1G50120 "AT1G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 282/441 (63%), Positives = 319/441 (72%)

Query:    51 GEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARW 110
             GE  FLD S   LISNQI+S  A  + ++R  LP IIPPSY+G T+RYLYY+KSTL  RW
Sbjct:    99 GEHIFLDSSTPSLISNQILSPGAKMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRW 158

Query:   111 LILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKE 170
             + LEN    ++S +D  +VE R+PLQ+WV QK NGLL EE+Q DGIVP +TIQ +IYWKE
Sbjct:   159 MALENSQFYKDSTQDFIEVETRIPLQVWVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKE 218

Query:   171 MDGDSEWSRANDIYDGVEEGYEXXXXXXXXXXXYNPSKENLLKTFGXXXXXXXXXXXXXX 230
             MDGDSEW+RAND YD  E+GY+           Y P+K NL +TFG              
Sbjct:   219 MDGDSEWTRANDAYDSGEDGYDSSRDEISSVSSY-PNKSNLNRTFGSSLSLNSGPRLSM- 276

Query:   231 KDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDI 290
             KD    E E +  S  + L QLSAA V YDS  DV SP+KS+  V PSQQ K T  A   
Sbjct:   277 KDTSYVE-ERVGSSPKMMLSQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGA--- 332

Query:   291 TGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFF 350
              GAS SP AG  EP  SEGF RGRSYNIRMDDQVLLRFSPKN++STYYFSD IGGTLTFF
Sbjct:   333 -GASMSPGAGAREPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFF 391

Query:   351 HEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIP 410
             HEEG RRCLEV +TLET ETINR FVHPSRRNSPT+TK+QSDHHEVVADL+QTSFLFSIP
Sbjct:   392 HEEGTRRCLEVSVTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIP 451

Query:   411 MDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSG 470
              DGPMSFSTP VSVQW LRFEFLTTPK V  +RYEHPLL+  R+KSEWVLPITVHAPP  
Sbjct:   452 TDGPMSFSTPRVSVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPR 511

Query:   471 APAGHNRNDKHFSLEPLWVRT 491
                  NR DK F LEP W+R+
Sbjct:   512 TSGAQNRGDKLFGLEPSWIRS 532

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

DICTYBASE|DDB_G0277397 DG1122 "E set domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
 Identities = 40/112 (35%), Positives = 63/112 (56%)

Query:   334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH 393
             ++ +   D + GT  F        C ++LI LE  E I+  ++  +R ++  I K+  + 
Sbjct:   327 KTAFSLGDSVHGTFDF--SIATIPCFKILIKLECEEIIDSKYLQSTRGSNKPIRKLYGEL 384

Query:   394 HEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYE 445
             HE   +L QT F+F IP++    FST YVSV+W+LRFEF+T P    +T Y+
Sbjct:   385 HEFTTNLRQTHFIFHIPVEASPEFSTKYVSVKWSLRFEFVT-PMKSSYTPYQ 435

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915956 Rgp1 "RGP1 retrograde golgi transport homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
 Identities = 32/106 (30%), Positives = 53/106 (50%)

Query:   334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNS---PTITKI- 389
             +S Y   + + GTL     EG   CL+  ++L+T E +   +    RR +   P+++ + 
Sbjct:   230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGTGVAPSVSHVT 285

Query:   390 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT 435
              + H E      +TSF   IP+     F T  VS++W L FEF+T+
Sbjct:   286 HARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTS 331

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-352 rgp1 "RGP1 retrograde golgi transport homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 36/145 (24%), Positives = 62/145 (42%)

Query:   334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH 393
             ++ Y   + + GT TF   EG   C++  ++L++ E +   +    RR    ++      
Sbjct:   229 KTVYRLGEDVIGTFTF--SEGDIPCIQYSVSLQSEEEVQEQY---QRRPGQAVSVTGHGR 283

Query:   394 H-EVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQ------------ 440
             H E       + F   +P++    F+T  V+++W L FEF+T  + V+            
Sbjct:   284 HLESCLHTASSHFSLPVPLNVTPGFTTDIVTLRWRLHFEFVTAREPVEAPVVLQNQSEVT 343

Query:   441 -WTRYEHPLLIEGRDKSEWVLPITV 464
              WT  EH  +    D   W LPI V
Sbjct:   344 VWTGAEHVDV----DTFSWDLPIKV 364

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030209001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (543 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	491
pfam08737	402	pfam08737, Rgp1, Rgp1	3e-20

>gnl|CDD|219995 pfam08737, Rgp1, Rgp1

 Score = 92.5 bits (230), Expect = 3e-20
 Identities = 79/382 (20%), Positives = 136/382 (35%), Gaps = 73/382 (19%)

Query: 55  FLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILE 114
            L    S L S+  ++   +K++  +  LP  +PPSYRG  I+  Y  K T+        
Sbjct: 90  LLSTPQSLLFSDLRLAPGESKTFHFKFTLPKDLPPSYRGKAIKISY--KLTVG------- 140

Query: 115 NGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGD 174
              TQR    +      R+P+++       G                +Q D+    +  D
Sbjct: 141 ---TQRGPAVNQKVKSLRVPIRVLPYVNAGGEQ--------------LQHDLMKPIIILD 183

Query: 175 SEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIP 234
            E          VE   E SR   S                      + + ++ S+  + 
Sbjct: 184 DEAR--------VEVKSEESRAPSSPFLE------------------RHAQSKKSSSTLE 217

Query: 235 AFEGELMRL-SSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKPADDITGA 293
            F   L  L SS             Y+     +     ++    S +   ++P   +   
Sbjct: 218 EFLEYLKELLSSR-----------SYNMPDSTLEDLLKSSQFGKSLRTSDSEPPLSVKDQ 266

Query: 294 SPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEE 353
            P+  + ++    +        Y I  + + +   S   S+  Y   + I GT+ F   +
Sbjct: 267 IPNAISNLLSQLQNP-----TRYQISRNGEKVATVSL--SKPAYRLGEDIVGTIDFSPGD 319

Query: 354 GARRCLEVLITLETSETINRWFVHPSRRNSPTIT-KIQSDHHEVVADLVQTSFLFSIPMD 412
               C  V  +LET E +N  +   S  ++   T ++ ++HHE   D  + SF   IP  
Sbjct: 320 LIP-CYGVSASLETEELVNPKYAVRSNASANRPTRRVHAEHHESCLDSRRISFSLPIPKS 378

Query: 413 GPMSFSTPYVSVQWALRFEFLT 434
               F T  V ++W LRFEF+T
Sbjct: 379 ATPQFQTDIVQLKWRLRFEFVT 400

Rgp1 forms heterodimer with Ric1 (pfam07064) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor. Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	491
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	100.0
KOG4469	391	consensus Uncharacterized conserved protein [Funct	100.0
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	97.91
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	96.38
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	95.78
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	93.89
KOG3780	427	consensus Thioredoxin binding protein TBP-2/VDUP1	93.09
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	85.12

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=100.00  E-value=1.2e-59  Score=483.58  Aligned_cols=300  Identities=25%  Similarity=0.363  Sum_probs=239.0

Q ss_pred             eeEeecCCcceeeeeeecCCCceeEEEEEecCCCCCCCCCcceEEEEEEEEeecccceeeeecCccccccccccceeeee
Q 011181           53 FAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEAR  132 (491)
Q Consensus        53 ~~f~~~~~pslvs~~~l~~g~~ksy~~r~~LP~~lPpSy~G~~ir~~Y~l~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~  132 (491)
                      +-|+.+....|.+|++|+|||+|+|.|++.||++|||||||++|||.|+|.           +|.|+ ++..++.+..++
T Consensus        99 ~p~~~t~~~iLf~dl~L~pge~k~f~~~~~lP~~lPPsy~g~~i~~~Y~l~-----------vg~~~-~~~~~~~~~~~~  166 (415)
T PF08737_consen   99 IPIFSTPQSILFSDLRLAPGESKSFHFSFTLPKDLPPSYRGKAIKISYSLV-----------VGTQR-GSSVNSKVKSIR  166 (415)
T ss_pred             ceEEecCCceEEEeeEECCCCcEEEEEEEeCCCCCCCCCcCcEEEEEEEEE-----------EEEEE-cCCCCcceEEEE
Confidence            457788888899999999999999999999999999999999999999998           89987 667788889999


Q ss_pred             eeeEEEEeecCCccccccccCCCCcccccccceeeecccc--------------CCcccccccccchhhhcccccCcccc
Q 011181          133 LPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMD--------------GDSEWSRANDIYDGVEEGYESSRDEI  198 (491)
Q Consensus       133 iP~~i~~~~~~~g~~~~~~~~~~~vp~~~~q~~i~~ke~~--------------~~s~w~~and~~~~veeg~~~~~d~~  198 (491)
                      ||||||.+|+++|.+++||+|.|++.+ .+++.+..++.+              ....|...+++++++++.+++..+..
T Consensus       167 ~Pi~v~~~v~~~g~~l~~dL~~p~i~l-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~Ll~s~~~~~  245 (415)
T PF08737_consen  167 VPIRVLPSVNSSGEQLQHDLMSPYIIL-RDEARVEVVDSDSKRPPSSFSISSFSSKKSESSKESFLQYVDELLESNSNNM  245 (415)
T ss_pred             eCEEEeeeecCCccccccccCCCcccc-CccceEEccccccccccCcccccccccCCchhhHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999 888886533321              23458888999999999988876531


Q ss_pred             cccccCCcccccccccccccccccccccccCCCCCCccccccccccccCcCCcccceeccccCCCcccCCCccceeeccc
Q 011181          199 SSVSSYNPSKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPS  278 (491)
Q Consensus       199 ~sv~s~~~~~~~~~~~~~ss~sl~s~~~r~s~~~~~~~~~~r~~~~~~~~~~~ls~~e~~~d~~~~~~~~~~~~a~~~~~  278 (491)
                      ...+.-      .+        ++++..        .....+.+    ...+..++++.|+            .++  ++
T Consensus       246 ~~~~~~------~~--------~~~~s~--------~~~~~~~~----~~~~~~~~~~~I~------------~~~--~~  285 (415)
T PF08737_consen  246 PDISTL------ED--------LLSPSQ--------FSMSSEDS----DSEPSYSYKDQIP------------SAI--SN  285 (415)
T ss_pred             cccccc------cc--------cccccc--------CCcccccc----ccccccchhhhhh------------hhh--hh
Confidence            111111      00        001000        00000111    1112245566665            333  11


Q ss_pred             ccccCCCCCCcCCCCCCCCCCcccccccccccccCcEEEEEeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeE
Q 011181          279 QQQKLTKPADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRC  358 (491)
Q Consensus       279 ~~~~~~~s~~~~~g~s~~~~~~~~e~~~~~~~~~~ksY~Inrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC  358 (491)
                      +.+.                          . .+++.|+|++||++||+|+|.  ||+||+||||.|+|||++.+ .+||
T Consensus       286 ~~~~--------------------------~-~~~~~y~I~~n~~~va~~~Ls--K~~yrlGE~I~g~idf~~~~-~~~c  335 (415)
T PF08737_consen  286 LLSQ--------------------------S-RNPNSYNIRRNGQRVARLSLS--KPAYRLGEDIVGTIDFNDAS-TIPC  335 (415)
T ss_pred             hccc--------------------------c-cCCcEEEEEECCeEEEEEEec--CCCcccCCeEEEEEEcCCCC-ccee
Confidence            1111                          1 148999999999999999997  99999999999999997432 4999


Q ss_pred             EEEEEEEEEeeeecCCccCCCCCC-CCceeeEEEeeeeeecccc-eeeEEecCCCCCCCceEeCceeEEEEEEEEEEec
Q 011181          359 LEVLITLETSETINRWFVHPSRRN-SPTITKIQSDHHEVVADLV-QTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT  435 (491)
Q Consensus       359 ~qVSVSLESeE~Inp~~a~~S~~s-sr~trKVhAe~hE~cld~~-rT~FsL~IP~~ATPqF~TdiVsLKW~LRFEFVts  435 (491)
                      ++|+|+||++|+|+++|++++..+ .++++++|+++||+|+|.+ +++|.|+||.++||+|.|++|+|||+||||||++
T Consensus       336 ~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~f~l~IP~~~tp~F~T~~v~lkW~LrfeFv~~  414 (415)
T PF08737_consen  336 YQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHHEICLDSRSRTSFSLPIPLSATPQFQTSGVSLKWRLRFEFVTS  414 (415)
T ss_pred             EEEEEEEEEEEEeCchhcccccccccccEEEEEEEEeeeecCCcceEEEEeeCCCCCCCceEeCCEEEEEEEEEEEEec
Confidence            999999999999999998765544 6889999999999999999 9999999999999999999999999999999985

>KOG4469 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-41  Score=331.62  Aligned_cols=278  Identities=26%  Similarity=0.390  Sum_probs=212.8

Q ss_pred             ccCceeEee-cCCc-ceeeeeeecCCCceeEEEEEecCCCCCCCCCcceEEEEEEEEeecccceeeeecCcccccccccc
Q 011181           49 FPGEFAFLD-ISAS-KLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGLTQRESKRDL  126 (491)
Q Consensus        49 ~~ge~~f~~-~~~p-slvs~~~l~~g~~ksy~~r~~LP~~lPpSy~G~~ir~~Y~l~~~~~~r~~~~~~g~~~~~~~~~~  126 (491)
                      .|||+--.- +++| .|.++++|.|||+|+|.|+-.||..=||||||.++||-|.|.           +|-||-.+.-.+
T Consensus        83 hrgergqcilstppkilfcdlrldpgesksysysevlpiegppsfrgqsvkyvyklt-----------igcqrvnspitl  151 (391)
T KOG4469|consen   83 HRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLT-----------IGCQRVNSPITL  151 (391)
T ss_pred             cCCcccceEecCCCceEEEEeecCCCccccccceeeeeccCCCccCCceeEEEEEEE-----------eeeEecCCcceE
Confidence            467653322 3334 467899999999999999999999999999999999999998           999987776666


Q ss_pred             ceeeeeeeeEEEEeecCCccccccccCCCCcccccccceeeeccccCCcccccccccchhhhcccccCcccccccccCCc
Q 011181          127 TQVEARLPLQIWVTQKGNGLLTEENQNDGIVPATTIQMDIYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNP  206 (491)
Q Consensus       127 ~~~~~~iP~~i~~~~~~~g~~~~~~~~~~~vp~~~~q~~i~~ke~~~~s~w~~and~~~~veeg~~~~~d~~~sv~s~~~  206 (491)
                      .    |+|+||.+--+-+..+           +..|++...    +..        |+   ||.-.-.+|.      +  
T Consensus       152 l----rvplrvlvltglqdvr-----------fpqdeavap----ssp--------fl---eedeggkkds------w--  193 (391)
T KOG4469|consen  152 L----RVPLRVLVLTGLQDVR-----------FPQDEAVAP----SSP--------FL---EEDEGGKKDS------W--  193 (391)
T ss_pred             E----eeceEEEEEecccccc-----------cCcccccCC----CCC--------cc---ccccCCccch------H--
Confidence            6    9999999866543333           112332211    111        32   2221113331      0  


Q ss_pred             ccccccccccccccccccccccCCCCCCccccccccccccCcCCcccceeccccCCCcccCCCccceeecccccccCCCC
Q 011181          207 SKENLLKTFGSSLSLQSSTARSSTKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADVISPNKSAAVVSPSQQQKLTKP  286 (491)
Q Consensus       207 ~~~~~~~~~~ss~sl~s~~~r~s~~~~~~~~~~r~~~~~~~~~~~ls~~e~~~d~~~~~~~~~~~~a~~~~~~~~~~~~s  286 (491)
                                     ..           .+.|+|-           -++                         +  .| 
T Consensus       194 ---------------la-----------elagerl-----------maa-------------------------t--sc-  208 (391)
T KOG4469|consen  194 ---------------LA-----------ELAGERL-----------MAA-------------------------T--SC-  208 (391)
T ss_pred             ---------------HH-----------Hhhhhhh-----------hhh-------------------------c--cc-
Confidence                           00           0111111           000                         0  01 


Q ss_pred             CCcCCCCCCCCCCcccccccccccccCcEEEEEeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEE
Q 011181          287 ADDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLE  366 (491)
Q Consensus       287 ~~~~~g~s~~~~~~~~e~~~~~~~~~~ksY~Inrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLE  366 (491)
                                              -.-.-|+|+.+..+|+.|-++  |+.||+||||.|++++.  ++++.|+|++++||
T Consensus       209 ------------------------rslhlynisdgrgkvgtfgif--ksvyrlgedvvgtlnlg--egtvaclqfsvslq  260 (391)
T KOG4469|consen  209 ------------------------RSLHLYNISDGRGKVGTFGIF--KSVYRLGEDVVGTLNLG--EGTVACLQFSVSLQ  260 (391)
T ss_pred             ------------------------ceeeeEeecCCCccceeeehh--hhhhhcccceeeeeecC--CceEEEEEEEEeec
Confidence                                    035679999999999999999  99999999999999995  79999999999999


Q ss_pred             EeeeecCCccCCCCCC-CC-ceeeEEEeeeeeecccceeeEEecCCCCCCCceEeCceeEEEEEEEEEEecCC-------
Q 011181          367 TSETINRWFVHPSRRN-SP-TITKIQSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPK-------  437 (491)
Q Consensus       367 SeE~Inp~~a~~S~~s-sr-~trKVhAe~hE~cld~~rT~FsL~IP~~ATPqF~TdiVsLKW~LRFEFVts~~-------  437 (491)
                      ++|.++|+|..+.++. .+ +..-.|+.|.|.|+++.+++|+|+||++.||.|+|.+|+|||+||||||++.+       
T Consensus       261 teervqpeyqrrrgaggvpsvshvtharhqesclhttrtsfslpiplsstpgfctaivslkwrlhfefvtsrepglvllp  340 (391)
T KOG4469|consen  261 TEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLP  340 (391)
T ss_pred             hhhhcChHHHhhccCCCCCcchhhhhhhhhhhhhhcccceeeeccccCCCCccEeeEeeeeeEEEEEEEecCCCCeEecC
Confidence            9999999999876554 22 22224999999999999999999999999999999999999999999999754       


Q ss_pred             ------CcccccccCCCCcCCceEEEEEeeeEEeCCCCCCC
Q 011181          438 ------HVQWTRYEHPLLIEGRDKSEWVLPITVHAPPSGAP  472 (491)
Q Consensus       438 ------~~~wqa~Edp~~L~e~EtFeW~LPItVlPt~P~~~  472 (491)
                            .+.|.++|+   + .+++|+|+|||+|+|++|.-+
T Consensus       341 pveqpepttwtgpeq---v-pvdtfswdlpikvlptsptla  377 (391)
T KOG4469|consen  341 PVEQPEPTTWTGPEQ---V-PVDTFSWDLPIKVLPTSPTLA  377 (391)
T ss_pred             CcCCCCCccccCCcc---c-cccccccccceeeccCCcchh
Confidence                  688999999   8 999999999999999999643

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=97.91  E-value=0.00064  Score=57.43  Aligned_cols=127  Identities=13%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             CCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeeeeeec--
Q 011181          321 DDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVA--  398 (491)
Q Consensus       321 ngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~hE~cl--  398 (491)
                      +|..-+.+.+.  |.+|..||+|...+++.+ .+..++.++.++|.-.-.....-...   ......++.++++..-.  
T Consensus         2 ~g~i~~~~~i~--~~~~~~Ge~i~v~v~i~n-~s~~~i~~I~v~L~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~   75 (136)
T PF02752_consen    2 SGKISLSISIP--RTAYVPGETIPVNVEIDN-QSKKKIKKIKVSLVERITYKAKGGKD---ESKSEKRVVAKSKNCGVDP   75 (136)
T ss_dssp             TEEEEEEEEES---SEEETT--EEEEEEEEE--SSSEEEEEEEEEEEEEEE-SS-------S-EEEEEEEEEEECCEB-B
T ss_pred             CCEEEEEEEEC--CCEECCCCEEEEEEEEEE-CCCCEEEEEEEEEEEEEEEEEeeccc---cceEEEEEEEEEecCCccC
Confidence            56777888884  999999999999999984 68899999999997766654332111   12333445555332222  


Q ss_pred             -cccee--eEEecCCCCCCCce--EeCceeEEEEEEEEEEecCCCcccccccCCCCcCCceEEEEEeeeEEeCCC
Q 011181          399 -DLVQT--SFLFSIPMDGPMSF--STPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPP  468 (491)
Q Consensus       399 -d~~rT--~FsL~IP~~ATPqF--~TdiVsLKW~LRFEFVts~~~~~wqa~Edp~~L~e~EtFeW~LPItVlPt~  468 (491)
                       ....-  ...|.+|.+.+|++  ..+.++++-.|++++.+..               ....+.+++||+|...+
T Consensus        76 ~~~~~~~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~v~~~~~~---------------~~~~~~~~~PI~I~~~p  135 (136)
T PF02752_consen   76 GSSGSFEFNIQLQLPSNLPPSTSTNSRLIQVEYQLEVTVKLSG---------------CTSDLRLELPITIGSSP  135 (136)
T ss_dssp             -TTEEEEEEEEE-----B-----CGGGSEEEEEEEEEEEEEET---------------TSEEEEEEEEEEEEB-S
T ss_pred             CCCceEEEEEEEcCCCccCcccccCCcEEEEEEEEEEEEEECC---------------ceeEEEEEccEEEEecC
Confidence             12212  37899999999988  6789999999999999862               23467899999998654

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=96.38  E-value=0.0037  Score=53.89  Aligned_cols=105  Identities=13%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             EEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCC-------------CCce----eeE
Q 011181          327 RFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN-------------SPTI----TKI  389 (491)
Q Consensus       327 rvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~s-------------sr~t----rKV  389 (491)
                      .+.|.++++.|..||.|.|.+.+.. ...+++-.+.+.|.-.+.+.-.........             ....    ..+
T Consensus         2 ~I~ld~~~~~y~~Ge~I~G~V~l~~-~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (149)
T PF00339_consen    2 EIELDNPKPVYFPGEVISGKVVLEL-SKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQL   80 (149)
T ss_dssp             EEEES-SEEEEESS--EEEEEEECT-TT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHH
T ss_pred             EEEECCCCCEECCCCEEEEEEEEEE-CCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEe
Confidence            4566678999999999999999963 567888889999999998753321111100             0000    000


Q ss_pred             EEe-eeeee--cccceeeEEecCCCCCCCceEeCceeEEEEEEEEE
Q 011181          390 QSD-HHEVV--ADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEF  432 (491)
Q Consensus       390 hAe-~hE~c--ld~~rT~FsL~IP~~ATPqF~TdiVsLKW~LRFEF  432 (491)
                      +.. ....+  .+...-+|.+.+|.+.+|+|.....+++|.|+-..
T Consensus        81 ~~~~~~~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l  126 (149)
T PF00339_consen   81 WGSEDGPNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL  126 (149)
T ss_dssp             HHH--------C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred             eeeccceecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence            100 00122  23444599999999999999999889999998876

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=95.78  E-value=0.0073  Score=52.10  Aligned_cols=40  Identities=28%  Similarity=0.474  Sum_probs=25.5

Q ss_pred             eeeecCCCceeEEEEEecCCCCCCCCCcceEEEEEEEEeec
Q 011181           66 NQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVKSTL  106 (491)
Q Consensus        66 ~~~l~~g~~ksy~~r~~LP~~lPpSy~G~~ir~~Y~l~~~~  106 (491)
                      ...|.+|+ -+|-|.+.||..||+||+|.--++.|.|++++
T Consensus        87 ~~~l~~G~-~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l  126 (149)
T PF00339_consen   87 PNILPPGE-YEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL  126 (149)
T ss_dssp             -----C-T-TEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred             eecccCCC-EEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence            57888995 67999999999999999999899999999776

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=93.89  E-value=0.19  Score=42.45  Aligned_cols=58  Identities=24%  Similarity=0.410  Sum_probs=34.5

Q ss_pred             ecCCCceeEE--EEEecCCCCCCCC--CcceEEEEEEEEeecccceeeeecCccccccccccceeeeeeeeEEEEe
Q 011181           69 VSSDATKSYV--IRTELPSIIPPSY--RGTTIRYLYYVKSTLSARWLILENGLTQRESKRDLTQVEARLPLQIWVT  140 (491)
Q Consensus        69 l~~g~~ksy~--~r~~LP~~lPpSy--~G~~ir~~Y~l~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~iP~~i~~~  140 (491)
                      +.+++..+|.  ..+.||..+|||.  .|.-|++.|.|+       +....+       .....+.+++|+.|...
T Consensus        73 ~~~~~~~~~~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~-------v~~~~~-------~~~~~~~~~~PI~I~~~  134 (136)
T PF02752_consen   73 VDPGSSGSFEFNIQLQLPSNLPPSTSTNSRLIQVEYQLE-------VTVKLS-------GCTSDLRLELPITIGSS  134 (136)
T ss_dssp             B-B-TTEEEEEEEEE-----B-----CGGGSEEEEEEEE-------EEEEEE-------TTSEEEEEEEEEEEEB-
T ss_pred             ccCCCCceEEEEEEEcCCCccCcccccCCcEEEEEEEEE-------EEEEEC-------CceeEEEEEccEEEEec
Confidence            4778888888  9999999999998  999999999998       222222       12456778999998653

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]

Probab=93.09  E-value=2.4  Score=43.79  Aligned_cols=134  Identities=18%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             CcEEEEEeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccC---CCCCCCCceeeE
Q 011181          313 GRSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVH---PSRRNSPTITKI  389 (491)
Q Consensus       313 ~ksY~Inrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~---~S~~ssr~trKV  389 (491)
                      ...+..-.+|..+..+.+  ||.+|..||.|...+++.+. ....+..+.+.|-..+.....-..   ..+.......+ 
T Consensus       177 ~~~~~~~~~g~v~~~~~i--p~~~~~~ge~i~~~~~i~n~-ss~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~~~-  252 (427)
T KOG3780|consen  177 KLGCVCFSSGPVSLELTI--PKTGYVPGETIPVTLEIENK-SSRTIKKVKAKLIQKISYLAFSYGEHTKTKKSEKTLIK-  252 (427)
T ss_pred             eeeEEEecCCcEEEEEEc--ccccCcCCccEEEEEEEecC-CCCcceeeEEEEEEEEEEEeecCCccccceeeeeEEee-
Confidence            344467788999999999  59999999999999999853 677777777777776665332110   00000111111 


Q ss_pred             EEeeeeeeccccee-eEEecCCCCCCCceE--eCceeEEEEEEEEEEecCCCcccccccCCCCcCCceEEEEEeeeEEe
Q 011181          390 QSDHHEVVADLVQT-SFLFSIPMDGPMSFS--TPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVH  465 (491)
Q Consensus       390 hAe~hE~cld~~rT-~FsL~IP~~ATPqF~--TdiVsLKW~LRFEFVts~~~~~wqa~Edp~~L~e~EtFeW~LPItVl  465 (491)
                      +.....+....... ...|.||... |+|.  +.+++++-.|++.+.+...   +           .....+.+||.|.
T Consensus       253 ~~~~~~v~~~~~~~~~~~~~iP~~~-Ps~~~~~~~i~v~y~l~v~~~~~~~---~-----------~~~~~l~~pi~ig  316 (427)
T KOG3780|consen  253 SRGSLEVAPRSEDKFEKELRIPPVP-PSILPDTPIIRVEYELKVTLKTSSL---R-----------HSELALELPIIIG  316 (427)
T ss_pred             eccccccCCCCccccceEEEcCCCC-CccCCCCceEEEEEEEEEEEecCcc---c-----------ccceeeeeceEEe
Confidence            22333344433332 5666689888 4666  6999999999999988651   1           1234566788887

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=85.12  E-value=8.4  Score=38.29  Aligned_cols=99  Identities=10%  Similarity=0.096  Sum_probs=60.7

Q ss_pred             CCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCC-CCceee-EEEeeeeeeccccee-eEEecCC
Q 011181          334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN-SPTITK-IQSDHHEVVADLVQT-SFLFSIP  410 (491)
Q Consensus       334 KpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~s-sr~trK-VhAe~hE~cld~~rT-~FsL~IP  410 (491)
                      ++.|+.||+|.|++.+...+..-++-++.+.|.+.=.....   +.... ....-+ ..++-..+=.+..+. +|.+++|
T Consensus        21 ~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~---d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP   97 (218)
T PF07070_consen   21 KPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESD---DKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLP   97 (218)
T ss_pred             CCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecC---CCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECC
Confidence            99999999999999998545566778888888775333211   00000 001111 011222222233333 9999999


Q ss_pred             CCCCCceEeCceeEEEEEEEEEEec
Q 011181          411 MDGPMSFSTPYVSVQWALRFEFLTT  435 (491)
Q Consensus       411 ~~ATPqF~TdiVsLKW~LRFEFVts  435 (491)
                      .+.+.+-....|.|+=.|.++--+-
T Consensus        98 ~etPiT~~~~~v~l~T~LdI~~avD  122 (218)
T PF07070_consen   98 WETPITEGGMRVWLRTGLDIAGAVD  122 (218)
T ss_pred             CCCCccCCCcEEEEEEEEEeCCCCC
Confidence            9988877666677777776665553

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	491
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 61/445 (13%), Positives = 128/445 (28%), Gaps = 143/445 (32%)

Query: 49  FPGEFAFLDISASKLISNQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLY-------- 100
           F   F   D+             D  KS + + E+  II      +    L+        
Sbjct: 29  FVDNFDCKDVQ------------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 101 -----YVKSTLSA--RWL-------------ILENGLTQRE---------SKRDLTQVEA 131
                +V+  L    ++L             +    + QR+         +K ++++++ 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 132 RLPLQIWVTQ------------KGNG---LLTEENQNDGIVPATTIQMD--IYW----KE 170
            L L+  + +             G+G   +  +   +  +      +MD  I+W      
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC----KMDFKIFWLNLKNC 192

Query: 171 MDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSSTARS-- 228
              ++       +   ++  + S  D  S++      + + ++     L           
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKSKPYENCLL 248

Query: 229 ------STKDIPAFEGE---LM--RLSSNV-ALPQLSAAEVLYDSSADVISPNKSAAVVS 276
                 + K   AF      L+  R       L   +   +  D  +  ++P++  +++ 
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 277 PSQQQKLTKPADDITGASPSPQAGVVEP------AAS--EGFIRGRSYNIRMDDQV---- 324
               + L     D+    P  +     P      A S  +G     ++     D++    
Sbjct: 309 ----KYLDCRPQDL----P-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 325 ---LLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRR 381
              L    P  +E    F       L+ F            I       I  WF      
Sbjct: 360 ESSLNVLEP--AEYRKMFDR-----LSVFPP-------SAHIPTILLSLI--WF------ 397

Query: 382 NSPTITKIQSDHHEVVADLVQTSFL 406
                  I+SD   VV  L + S +
Sbjct: 398 -----DVIKSDVMVVVNKLHKYSLV 417

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 67/416 (16%), Positives = 120/416 (28%), Gaps = 122/416 (29%)

Query: 163 QMDIYWKEM--DGDSEWSRANDIYDGVEEGYES--SRDEISSVSSYNPSKENLLKTFGSS 218
           +    +K++    +  +    D  D V++  +S  S++EI  +     +    L+ F + 
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 219 LSLQSSTARSSTKDIPAFEGELMR-----LSSNVALP--QLSAAEVLYDSSADVI----S 267
           LS Q    +        F  E++R     L S +     Q S    +Y    D +     
Sbjct: 72  LSKQEEMVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 268 PNKSAAVVSPSQQQKLT------KPADDIT--GASPSPQAG------VVEPAASEGFIRG 313
                 V       KL       +PA ++   G       G       ++   S      
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-----VLGSGKTWVALDVCLSYKVQCK 179

Query: 314 RSYNI--------RMDDQVL-------LRFSPK------NSESTYYFSDMIGGTL-TFFH 351
             + I           + VL        +  P       +S +       I   L     
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 352 EEGARRCLEVLITLETSETINRWFVHPSR-----RNS--------PTITKIQSDHHEVVA 398
            +    CL VL+ ++ ++  N  F    +     R           T T I  DHH +  
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 399 DLVQTSFLFS-----IPMDGP--MSFSTPY-VSVQWALRFEFLTTPKHVQWTRYEHPLL- 449
              +   L        P D P  +  + P  +S+      + L T     W  ++H    
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-----WDNWKHVNCD 353

Query: 450 ---------IEGRDKSEW--------VLPITVHAPPSGAPAGHNRNDKHFSLEPLW 488
                    +   + +E+        V P + H P                L  +W
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-------------LLSLIW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	491
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	97.91
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	97.43
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	87.58
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	86.69
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	82.86

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=97.91  E-value=0.002  Score=65.28  Aligned_cols=119  Identities=12%  Similarity=0.094  Sum_probs=79.2

Q ss_pred             EEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeee--e-eecccc
Q 011181          325 LLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHH--E-VVADLV  401 (491)
Q Consensus       325 VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~h--E-~cld~~  401 (491)
                      ...+.+.  |..|.+||.|.|.+.|.  .+.++...+.+.|--.|+....      .+...-.+..++..  + .+....
T Consensus       177 ~Ie~~~~--ks~y~lgd~I~G~I~f~--~s~i~Ik~iel~LiR~Et~~~~------~~~~~e~~~i~k~eImdG~p~rge  246 (340)
T 2r51_A          177 HIEFEYN--KSKYHLKDVIVGKIYFL--LVRIKIKHMEIDIIKRETTGTG------PNVYHENDTIAKYEIMDGAPVRGE  246 (340)
T ss_dssp             EEEEEES--CSEEETTCEEEEEEEEE--EECSCEEEEEEEEEEEEEEEET------TEEEEEEEEEEEEEEEESCCCTTC
T ss_pred             EEEEEEC--cccccCCCeEEEEEEEE--EeeceeEEEEEEEEEEEEEecC------CCeeEEEEEEEEEEEecCCccCCC
Confidence            4566774  99999999999999996  4678888888999888887311      00111112222222  1 112222


Q ss_pred             eeeEEecCC-CCCCCceE--eCceeEEEEEEEEEEecCCCcccccccCCCCcCCceEEEEEeeeEEeCCCC
Q 011181          402 QTSFLFSIP-MDGPMSFS--TPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPS  469 (491)
Q Consensus       402 rT~FsL~IP-~~ATPqF~--TdiVsLKW~LRFEFVts~~~~~wqa~Edp~~L~e~EtFeW~LPItVlPt~P  469 (491)
                      ..+|.|.+| .+.||+|.  +..|++++.|.+..+....                ....-.+||+++=..+
T Consensus       247 ~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~~e~~----------------~~~~kq~pI~L~R~~~  301 (340)
T 2r51_A          247 SIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEE----------------RRYFKQQEVVLWRKGD  301 (340)
T ss_dssp             EEEEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEEETTC----------------CEEEEEEEEEEECCC-
T ss_pred             EEEEEEECCCCCCCCCccccCCeEEEEEEEEEEEEeCCC----------------cEEEEEeeEEEEECCC
Confidence            347888888 58999999  9999999999987666431                1345567888885544

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=97.43  E-value=0.017  Score=58.64  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             EEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEe--eeee-eccccee
Q 011181          327 RFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSD--HHEV-VADLVQT  403 (491)
Q Consensus       327 rvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe--~hE~-cld~~rT  403 (491)
                      .|.+  +|..|.+||.|.|.+.|.  .+.++...+.+.|.-.|+....      .+...-.+...+  ..+- +......
T Consensus       179 eF~~--~ks~y~l~d~I~G~I~f~--~s~i~Ik~iel~LiR~Et~~~~------~~~~~e~~~i~k~eImDG~p~rge~I  248 (341)
T 2fau_A          179 EFEY--NKSKYHLKDVIVGKIYFL--LVRIKIQHMELQLIKKEITGIG------PSTTTETETIAKYEIMDGAPVKGESI  248 (341)
T ss_dssp             EEEE--SCSEEETTCEEEEEEEEE--EECSCEEEEEEEEEEEEEESCG------GGCEEEEEEEEEEECCCC------CE
T ss_pred             EEEE--ccccccCCCeEEEEEEEE--EeccceEEEEEEEEEEEEEcCC------CCeeeEEEEEEEEEEeCCCccCCCEE
Confidence            3446  499999999999999996  3678888888889888886311      001111111211  1111 1122234


Q ss_pred             eEEecCC-CCCCCceE--eCceeEEEEEEEEEEecC
Q 011181          404 SFLFSIP-MDGPMSFS--TPYVSVQWALRFEFLTTP  436 (491)
Q Consensus       404 ~FsL~IP-~~ATPqF~--TdiVsLKW~LRFEFVts~  436 (491)
                      +|.|.+| ...||+|.  +..|++++.|++..+...
T Consensus       249 Pirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlvde~  284 (341)
T 2fau_A          249 PIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEE  284 (341)
T ss_dssp             EEEEESTTTCCCCCEEEEETTEEEEEEEEEEEEETT
T ss_pred             EEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEEeCC
Confidence            7899999 58999999  999999999999887755

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=87.58  E-value=15  Score=37.60  Aligned_cols=133  Identities=14%  Similarity=0.184  Sum_probs=79.6

Q ss_pred             eCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeee--eee
Q 011181          320 MDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHH--EVV  397 (491)
Q Consensus       320 rngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~h--E~c  397 (491)
                      +.|..-+.+.|.  |..|..||+|...++.++ .+...+-.+.+.|.-...+-- |..   .  . .+++.++..  +-.
T Consensus       193 ~sG~l~l~~sld--k~~Y~pGE~I~v~v~I~N-~S~k~Vk~Ikv~L~Q~~~~~~-~s~---~--~-~k~~Va~~e~~~~V  262 (393)
T 1g4m_A          193 SDKPLHLEASLD--KEIYYHGEPISVNVHVTN-NTNKTVKKIKISVRQYADICL-FNT---A--Q-YKCPVAMEEADDTV  262 (393)
T ss_dssp             SSSCEEEEEEES--CSEEETTCCEEEEEEEEE-CSSCCEEEEEEEEEEEEEECS-SBC---E--E-EEEEEEEEEECCCB
T ss_pred             cCCCEEEEEEEC--CceEcCCCEEEEEEEEEc-CCCCEEeEEEEEEEEEEEEEE-ecC---C--c-eEEEEEEEecCCcC
Confidence            467788889995  999999999999999985 577778888888877653310 000   0  1 112222221  211


Q ss_pred             cccc--eeeEEecCCCCCC-----------------Cc-eEeCcee-----------EEEEEEEEEEecCCCcccccccC
Q 011181          398 ADLV--QTSFLFSIPMDGP-----------------MS-FSTPYVS-----------VQWALRFEFLTTPKHVQWTRYEH  446 (491)
Q Consensus       398 ld~~--rT~FsL~IP~~AT-----------------Pq-F~TdiVs-----------LKW~LRFEFVts~~~~~wqa~Ed  446 (491)
                      ....  +..|.| +|.-++                 .. -.+.+++           +...|+++..++. +...   .+
T Consensus       263 ~~gs~~~~~~~L-~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~vkV~l~v~~-gg~~---~~  337 (393)
T 1g4m_A          263 APSSTFCKVYTL-TPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSR-GGLL---GD  337 (393)
T ss_dssp             CTTEEEEEEEEE-CCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECC-C--------
T ss_pred             CCCCEEeeEEEE-cCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEEEEEEEecC-CCcc---cc
Confidence            1111  224555 455432                 12 3345677           9999999988864 2100   01


Q ss_pred             CCCcCCceEEEEEeeeEEeCCCCCC
Q 011181          447 PLLIEGRDKSEWVLPITVHAPPSGA  471 (491)
Q Consensus       447 p~~L~e~EtFeW~LPItVlPt~P~~  471 (491)
                         + -.......|||+|..+.|..
T Consensus       338 ---~-~~~~l~~~lPi~i~~p~p~~  358 (393)
T 1g4m_A          338 ---L-ASSDVAVELPFTLMHPKPKE  358 (393)
T ss_dssp             -------CEEEEEEEEEEECCCCC-
T ss_pred             ---c-ccccEEEEeCEEEecCCCCc
Confidence               1 22467899999999877775

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=86.69  E-value=0.36  Score=49.54  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             eecCCCceeEEEEEecCCCCCCCCC--------cceEEEEEEEEeecc
Q 011181           68 IVSSDATKSYVIRTELPSIIPPSYR--------GTTIRYLYYVKSTLS  107 (491)
Q Consensus        68 ~l~~g~~ksy~~r~~LP~~lPpSy~--------G~~ir~~Y~l~~~~~  107 (491)
                      ++.+| .-+|-|+++||..||+||.        |+.-.+.|.|+.++-
T Consensus       105 ~~~~G-~h~fPF~f~LP~~lPsSfelq~~~~d~G~~g~IrY~Vka~i~  151 (393)
T 1g4m_A          105 IKKLG-EHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCA  151 (393)
T ss_dssp             HHHSC-TTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEE
T ss_pred             hccCC-ceEEEEEeeCCCCCCceEEEccccccCCCcEEEEEEEEEEEc
Confidence            34477 4579999999999999998        999999999987663

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=82.86  E-value=0.97  Score=46.76  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=80.8

Q ss_pred             EeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEee--eee
Q 011181          319 RMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH--HEV  396 (491)
Q Consensus       319 nrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~--hE~  396 (491)
                      -.+|..-++++|-  |..|..||+|...++.++ ++...+-.+.+.|.-.-.+-- |.      ....+++.++.  -|-
T Consensus       189 ~ssGpl~l~vsLd--K~~Y~pGE~I~V~v~I~N-~Ssk~Vk~Ikv~L~Q~~~v~l-~s------~~~~k~~Va~~e~~e~  258 (392)
T 1suj_A          189 LSDRPLHLEASLD--KEIYYHGEPINVNVKINN-TTGKIVKKIKIIVEQVTDVVL-FS------LDKYVKTVCAEETNDT  258 (392)
T ss_dssp             ETTEEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSEEEEEEEEEEEEEEECS-SS------CCEEEEEEEEEECCCC
T ss_pred             ecCCCEEEEEEeC--CccccCCCEEEEEEEEEC-CCCCcEeEEEEEEEEEEEEEE-ec------CCcEEEEEEEEecCCC
Confidence            3467788899995  999999999999999986 566677778887776555420 00      01112333322  111


Q ss_pred             ecccc--eeeEEecCCCCC-----------------CCceE-eCc-----------eeEEEEEEEEEEecCCCccccccc
Q 011181          397 VADLV--QTSFLFSIPMDG-----------------PMSFS-TPY-----------VSVQWALRFEFLTTPKHVQWTRYE  445 (491)
Q Consensus       397 cld~~--rT~FsL~IP~~A-----------------TPqF~-Tdi-----------VsLKW~LRFEFVts~~~~~wqa~E  445 (491)
                      +.-..  +..|.|. |.-+                 ...+. +.+           +.+...|+.+.+++..+    ...
T Consensus       259 V~pgst~~k~~~L~-P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY~vkVkl~v~~gg----~~~  333 (392)
T 1suj_A          259 VAANSTLSKTFSVT-PMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSYKVKVHLVVARGG----ILG  333 (392)
T ss_dssp             BCTTEEEEEEEEEC-CCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEEETTS----STT
T ss_pred             cCCCCEEEEEEEEe-ccccCCCccceeeecccccCCCccccccccccCCCCccccceEEEEEEEEEEEEcCCc----ccc
Confidence            11111  1244442 3332                 11121 111           79999999999996511    011


Q ss_pred             CCCCcCCceEEEEEeeeEEeCCCCCCC
Q 011181          446 HPLLIEGRDKSEWVLPITVHAPPSGAP  472 (491)
Q Consensus       446 dp~~L~e~EtFeW~LPItVlPt~P~~~  472 (491)
                      +   + -.......||+++..+.|...
T Consensus       334 ~---~-~s~d~~velPf~L~~p~P~~~  356 (392)
T 1suj_A          334 D---L-TSSDVAVELPLTLMHPKPSDD  356 (392)
T ss_dssp             C---C-CCEEEEEEEEEEEECCCCCCC
T ss_pred             c---c-cccCeeEEECeEEeCCCCCCc
Confidence            1   2 235678999999998888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	491
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	92.37
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	91.37

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=92.37  E-value=2  Score=38.30  Aligned_cols=144  Identities=12%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             cEEEEEeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecC----Ccc-----CCCCCC--
Q 011181          314 RSYNIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINR----WFV-----HPSRRN--  382 (491)
Q Consensus       314 ksY~Inrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp----~~a-----~~S~~s--  382 (491)
                      +.| +-..|..-..+.+.  |..|..||.|...++.++ .+...+-.+.+.|.-.-.+--    .+.     ......  
T Consensus        12 k~f-~~~sg~l~l~~~ld--r~~Y~~Ge~I~v~v~i~N-~s~~~v~~i~~~l~Q~~~~~~~s~~~~~~~Va~~e~~~~~~   87 (211)
T d1cf1a2          12 WQF-FMSDKPLRLAVSLS--KEIYYHGEPIPVTVAVTN-STEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVP   87 (211)
T ss_dssp             EEE-EETTEEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSCEEEEEEEEEEEEEECSSSCCEEEEEEEEEEESCCBC
T ss_pred             eeE-EecCCCEEEEEEEC--CceEcCCCEEEEEEEEEc-CCCcceeeEEEEEEEEEEEEEecCCceEEEEEEEEecCccC
Confidence            445 35578888899996  999999999999999986 566777788888776554411    000     000000  


Q ss_pred             -CCceeeEEEee---------eeeeccc----ceeeEEecCCCCCCCceEeCceeEEEEEEEEEEecCCCcccccccCCC
Q 011181          383 -SPTITKIQSDH---------HEVVADL----VQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPL  448 (491)
Q Consensus       383 -sr~trKVhAe~---------hE~cld~----~rT~FsL~IP~~ATPqF~TdiVsLKW~LRFEFVts~~~~~wqa~Edp~  448 (491)
                       ..+..++|+..         +...+|.    ..+.+....|..-+....+.++.+...|+++..++..+..+.      
T Consensus        88 ~~~t~~k~~~l~p~~~~~k~~~~ialdg~~k~e~~~las~~~~~~~~~~~~~gI~VsY~vkV~l~~~~~~g~~~------  161 (211)
T d1cf1a2          88 PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELT------  161 (211)
T ss_dssp             TTEEEEEEEEECCCGGGCSCCSSSCBSSCTTBTTCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEECCCTTCSS------
T ss_pred             CCcceEEEEEeeeccccCccceeeeecccccccccccccccccCCCCCCccceEEEEEEEEEEEEecCCccccc------
Confidence             00011111110         0011111    112233334444446677788999999999999975332221      


Q ss_pred             CcCCceEEEEEeeeEEeCCCCCC
Q 011181          449 LIEGRDKSEWVLPITVHAPPSGA  471 (491)
Q Consensus       449 ~L~e~EtFeW~LPItVlPt~P~~  471 (491)
                          .......||+++..+.|..
T Consensus       162 ----~sdv~veLP~~l~~p~P~~  180 (211)
T d1cf1a2         162 ----SSEVATEVPFRLMHPQPED  180 (211)
T ss_dssp             ----CEEEEEEEEEEEEBCCCCC
T ss_pred             ----cCCceEEECeeeecCCCCC
Confidence                2345678999997666643

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=91.37  E-value=4.4  Score=35.68  Aligned_cols=142  Identities=11%  Similarity=0.095  Sum_probs=82.6

Q ss_pred             EEeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCC---------CCCCCceee
Q 011181          318 IRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPS---------RRNSPTITK  388 (491)
Q Consensus       318 Inrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S---------~~ssr~trK  388 (491)
                      +-..|..-..+.|.  |..|..||.|...++..+ ++...+..+.+.|.-.-.+...-....         +....+..+
T Consensus        16 ~~~sg~~~l~~~l~--~~~y~~Ge~I~v~v~i~N-~s~~~v~~i~~~l~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~st   92 (218)
T d1g4ma2          16 LMSDKPLHLEASLD--KEIYYHGEPISVNVHVTN-NTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSST   92 (218)
T ss_dssp             BSSSSCEEEEEEES--CSEEETTCCEEEEEEEEE-CSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEEECCCBCTTEE
T ss_pred             EeeCCcEEEEEEEC--CCeEcCCCEEEEEEEEEC-CCCCEEeeEEEEEEEEEEEEEecCCcEEEEEEEEeeccccCCCcc
Confidence            34578999999995  999999999999999985 567778888888866555421100000         000000001


Q ss_pred             EEEeeeeeec--cc-------------ceeeEEecCCCCCCCceEe-CceeEEEEEEEEEEecCCCcccccccCCCCcCC
Q 011181          389 IQSDHHEVVA--DL-------------VQTSFLFSIPMDGPMSFST-PYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEG  452 (491)
Q Consensus       389 VhAe~hE~cl--d~-------------~rT~FsL~IP~~ATPqF~T-diVsLKW~LRFEFVts~~~~~wqa~Edp~~L~e  452 (491)
                      ..-.++..++  ..             ......+.+|...++.++. .++.+.+.|+.+..++....    ..+   + .
T Consensus        93 ~~k~~~l~~~~~~n~~~~~ial~~~~~~~~~~l~~~p~~~~~~~~~~~~I~V~Y~lkV~~~v~~~~~----~~~---~-~  164 (218)
T d1g4ma2          93 FCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGL----LGD---L-A  164 (218)
T ss_dssp             EEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECCC---------------
T ss_pred             eEeEEEecccccccceeeeEecCcccceeeccccccccCCCCccccceeEEEEEEEEEEEEecCCcc----cCc---e-e
Confidence            1111111111  00             0113345677777777765 56999999999999865210    001   1 2


Q ss_pred             ceEEEEEeeeEEeCCCCC
Q 011181          453 RDKSEWVLPITVHAPPSG  470 (491)
Q Consensus       453 ~EtFeW~LPItVlPt~P~  470 (491)
                      .-.....||+++.++.|.
T Consensus       165 ~~~v~~~lP~~l~~p~p~  182 (218)
T d1g4ma2         165 SSDVAVELPFTLMHPKPK  182 (218)
T ss_dssp             -CEEEEEEEEEEECCCCC
T ss_pred             cCceEEEECceecCCCCc
Confidence            234577899998765543