Citrus Sinensis ID: 011206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
Protein Sequence
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHcHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHccccHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHccccccccHHHHHHHHccccHHHHHHHHHccccEEcccccccHHHHHHHHHHHHcccHHHHHHcccEEcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEcccHHHcccccccccEEEEEEcccHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccEEEEEEEEcccccccHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHccHHHcccHHHHccHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msllclhsvfsspatilhshslvqtrpntprFVVLSTHSnakilktnrksrygqtlslydddseeegedddddddegkeddwladdddfaeieeydvngssrrspvkgcgvgsfrsgrslqgAQEQLDIrnrrntiknsfddtyynskdvdqrgkvmtrNATENRYQRLSEEIELDEKWLPLLDYLstfglkesHFIQMYERhmpslqinVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISlgipnskigqiiaatpslfsySVENSLKPTVRYLVEEVGinekslgkvvqlspQVLVQRIDISWNTRCIFLskelgaprddVVKMVTkhpqllhysiddgllpriNFLRSIGMRNSDILKVLRSLTQVLSLslednlkpkYTYLINELHNEVQSLTKYPMYLslsldqrirpRHRFLVSlkkapkgpfplslfiptdecfcqkwagTTVDKYLAFRQKLLLKDFAKKYERRG
Flexible Loop (DISEMBL)
MSLLCLHSVFSSPATilhshslvqtrpNTPRFVVLSthsnakilktnrksrygqtlslydddseeegedddddddegkeddwladdddfAEIEeydvngssrrspVKGCgvgsfrsgrslqgaqeqldirnrrntiknsfddtyynskdvdqrgkvmtrnatenryQRLSeeieldekwLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLsvgvkqrdvrRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGInekslgkvvqlspQVLVQRIDISWNTRCIFLSkelgaprdDVVKMVTKHPQLlhysiddgllpRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFakkyerrg
Low Complexity Region (SEG)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYdddseeegedddddddegkeddwladdddFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Disordered region (IsUnstruct)
***LCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHS***I******************************************************************************************************************************SEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFA*******
Disordered Region (DISOPRED)
*******SVFSSPATILH***************VL************************************************************************************************************YYNSKD****************************KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLK**********
Disordered Region (DISEMBL)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLY*******************EDDWLADDDDFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Disordered Region (DISPRO)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRK****Q******************************D**DFA**E***************************************************YNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	491	2.2.26 [Sep-21-2011]
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.507	0.608	0.255	2e-08
Q96E29	417	mTERF domain-containing p	yes	no	0.509	0.599	0.245	1e-06
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.435	0.528	0.249	2e-06
Q8R3J4	412	mTERF domain-containing p	yes	no	0.494	0.589	0.246	9e-06

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 29/278 (10%)

Query: 216 ERLEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQ 269
           E L+ L+ +GV      K  DV  +LLR         E +++  + FL  LG+ ++++G 
Sbjct: 146 ETLQKLVQLGVDLSKIEKHPDVANLLLR------LNFEKDIKQILLFLKDLGLEDNQLGP 199

Query: 270 IIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTR 326
            +    ++FS  +EN LK  V YL +    ++  +  +V+ +P +L   V+R+D     R
Sbjct: 200 FLTKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIACMVKNAPFLLSFSVERLD----NR 253

Query: 327 CIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQ 386
             F  KEL         +V + P+LL  S++        +   +G ++++I  ++  + +
Sbjct: 254 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPK 313

Query: 387 VLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---P 443
           +L+ + +  L   + Y+ N ++     + K+P   +  +  +I+ RH FL  L KA   P
Sbjct: 314 MLTAN-KRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVF-KIKERHLFLAYLGKAQYDP 371

Query: 444 KGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 478
             P  +SL  F+   DE FC++ A  +V+ +  F + L
Sbjct: 372 AKPNYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Rattus norvegicus (taxid: 10116)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 216 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 275
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 154 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 213

Query: 276 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 332
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 214 AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 267

Query: 333 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 392
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 268 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 326

Query: 393 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 445
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 327 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK 381

Query: 446 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 478
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 382 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 417

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 51/265 (19%)

Query: 218 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 277
           L +L  VG++   +   L + P IL   +E  LE+ VA+L S    N++I Q+++  P L
Sbjct: 180 LLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVSRAPYL 238

Query: 278 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKELGA 336
             +SVE  L   + +   E+G++ K    +V   P++L  +++ +  N +      E G 
Sbjct: 239 LLFSVER-LDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVC--QVEFGF 295

Query: 337 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 396
            R++V ++  K P++L  S                                     +  L
Sbjct: 296 ERNEVQQIAFKTPKILTAS-------------------------------------KKRL 318

Query: 397 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL-- 451
           +  + YL N +      LT++P   +  L  RI+ RH FL+ L +A   P  P  +SL  
Sbjct: 319 RQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISLDQ 377

Query: 452 --FIPTDECFCQKWAGTTVDKYLAF 474
              +P DE FC + A  ++  +  F
Sbjct: 378 LVSLP-DEVFCTEIAKASMQDFEKF 401

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 37/280 (13%)

Query: 218 LEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQII 271
           L+ L+ +GV      K  D   +LLR    L++  E +++  + FL  LG+ ++++G  +
Sbjct: 151 LQKLVQLGVDLSKIEKHPDAANLLLR----LDF--EKHIKQILLFLKDLGLEDNQLGPFL 204

Query: 272 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCI 328
               ++FS  +EN LK  V YL +    ++  + ++V+ +P +L   V+R+D     R  
Sbjct: 205 TKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIARMVKNAPFLLSFSVERLD----NRLG 258

Query: 329 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVL 388
           F  KEL         +V + P+LL  S++        +   +G ++++I  ++  + ++L
Sbjct: 259 FFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKML 318

Query: 389 SLSLEDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA-- 442
           + +     K K T + + +HN +      + K+P   +  +  +I+ RH FL  L +A  
Sbjct: 319 TAN-----KRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVF-KIKERHLFLAYLGRAQY 372

Query: 443 -PKGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 478
            P  P  +SL  F+   D+ FC++ A  +++ +  F + L
Sbjct: 373 DPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
224056433	448	predicted protein [Populus trichocarpa]	0.885	0.970	0.719	0.0
225460761	514	PREDICTED: uncharacterized protein LOC10	0.936	0.894	0.710	0.0
449467351	521	PREDICTED: uncharacterized protein LOC10	0.936	0.882	0.711	0.0
255576320	508	conserved hypothetical protein [Ricinus	0.910	0.879	0.727	0.0
356499427	488	PREDICTED: uncharacterized protein LOC10	0.932	0.938	0.660	1e-173
297793029	493	mitochondrial transcription termination	0.942	0.939	0.653	1e-167
15240542	496	Mitochondrial transcription termination	0.955	0.945	0.651	1e-166
357494843	528	mTERF domain-containing protein [Medicag	0.918	0.854	0.627	1e-161
297737540	480	unnamed protein product [Vitis vinifera]	0.822	0.841	0.693	1e-158
115473031	503	Os07g0583200 [Oryza sativa Japonica Grou	0.782	0.763	0.641	1e-145

>gi|224056433|ref|XP_002298854.1| predicted protein [Populus trichocarpa] gi|222846112|gb|EEE83659.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/467 (71%), Positives = 380/467 (81%), Gaps = 32/467 (6%)

Query: 34  VLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIE 93
           VLSTHSNAKIL   RKSRYG T SLYD D                 DDWL DD+ FAE  
Sbjct: 5   VLSTHSNAKILNPKRKSRYGHTFSLYDTDI--------------GLDDWLLDDE-FAEPV 49

Query: 94  EYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSK----- 148
           +++V+G  R        V S +   + +G Q   + R  +NT + S    +Y +K     
Sbjct: 50  DFEVDGKKR--------VNSQKKTSTREGGQRLFNSRTSKNTREKSMVGNFYGTKTRTKE 101

Query: 149 ----DVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHM 204
               D++ +GK+MT  +TE+RY +LSEEI+LDEKWLPLLDYLSTFGLKESHFIQ+YERHM
Sbjct: 102 ADSSDINGQGKLMTGKSTEDRYPKLSEEIDLDEKWLPLLDYLSTFGLKESHFIQIYERHM 161

Query: 205 PSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 264
           PSLQINVCSARERLEYL S+GVK RD++RILLRQPQILEYTVE+NL+SH AFLI LGIPN
Sbjct: 162 PSLQINVCSARERLEYLQSIGVKHRDIKRILLRQPQILEYTVESNLKSHTAFLIGLGIPN 221

Query: 265 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWN 324
           S+IGQIIAA PSLFSYSVENSLKPTVRY+VEEVGI+EK++GKVVQLSPQ+LVQRID+SWN
Sbjct: 222 SRIGQIIAAAPSLFSYSVENSLKPTVRYMVEEVGIDEKNIGKVVQLSPQILVQRIDVSWN 281

Query: 325 TRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 384
           TR +FLS+ELGA RD VVKMVTKHPQLLHYSIDDG +PRINFLRSIGM N DILKVL SL
Sbjct: 282 TRYLFLSRELGASRDSVVKMVTKHPQLLHYSIDDGFIPRINFLRSIGMHNGDILKVLTSL 341

Query: 385 TQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPK 444
           TQVLSLSLEDNLKPKY YLINEL NEVQSLTKYP YLSLSLDQRIRPRHRFLV+LKKAPK
Sbjct: 342 TQVLSLSLEDNLKPKYKYLINELRNEVQSLTKYPTYLSLSLDQRIRPRHRFLVALKKAPK 401

Query: 445 GPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG 491
           GPFPLS F+PTDE FCQ+WAGT+VDKYLAFRQ+LLLK+FAKKYE+RG
Sbjct: 402 GPFPLSSFVPTDESFCQQWAGTSVDKYLAFRQQLLLKEFAKKYEKRG 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460761|ref|XP_002276224.1| PREDICTED: uncharacterized protein LOC100260706 [Vitis vinifera]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/470 (71%), Positives = 387/470 (82%), Gaps = 10/470 (2%)

Query: 29  TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDD---DDDEGKEDDWLAD 85
           T  F VLSTHSN +ILK+NR+SRYGQ LS YD D +  G++D D   DD++ + +++ AD
Sbjct: 46  TSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTD-DNAGDEDGDWFFDDEDSETEEFDAD 104

Query: 86  DDDFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYY 145
              F   +  D    SRR   +   + S +S  S   ++ +LD++N +NTI +S+  T+ 
Sbjct: 105 RKKFNSQKGNDTRQGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNGKNTIGSSYH-TFN 163

Query: 146 NSKDVDQR-----GKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMY 200
            S+D D       GK+  R +TEN+Y RLSEEI+LDEKW PLLDYLSTFGLKESHFIQMY
Sbjct: 164 KSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLSTFGLKESHFIQMY 223

Query: 201 ERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISL 260
           ERHMPSLQIN CSA+ERLEYL SVGVK RD++RI+LRQPQILEYTVENNL+SHVAFL+ L
Sbjct: 224 ERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVENNLKSHVAFLVGL 283

Query: 261 GIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID 320
           GIP+S+IG +IAA PSLFSYSVENSLKPTVRYL+EEVGI +  LGKVVQLSPQ+LVQRID
Sbjct: 284 GIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKVVQLSPQILVQRID 343

Query: 321 ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKV 380
            SWNTR  FLS+ELGAPRD +VKMVTKHPQLLHYSI+DG LPRINFLRSIGMRNSDILKV
Sbjct: 344 NSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFLRSIGMRNSDILKV 403

Query: 381 LRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLK 440
           L +LTQVLSLSLEDNLKPKY YL+NEL NEV SLTKYPMYLSLSLDQRIRPRHRFLV LK
Sbjct: 404 LTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQRIRPRHRFLVYLK 463

Query: 441 KAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERR 490
           KAPKGPFPLS F+PTDECFCQ+WAGT++D YLAFRQ+LLLKDFAKKYE+R
Sbjct: 464 KAPKGPFPLSSFVPTDECFCQQWAGTSLDSYLAFRQRLLLKDFAKKYEKR 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467351|ref|XP_004151387.1| PREDICTED: uncharacterized protein LOC101207692 [Cucumis sativus] gi|449517569|ref|XP_004165818.1| PREDICTED: uncharacterized protein LOC101227066 [Cucumis sativus]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/481 (71%), Positives = 396/481 (82%), Gaps = 21/481 (4%)

Query: 28  NTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDD 87
           N PRFVV STHS+A ILK  R+SR+G+TLS +D D  E+G D D+   +G +DD   D+ 
Sbjct: 43  NVPRFVVRSTHSSAAILKPKRRSRFGRTLSPFDSD--EDGYDVDEFSSDGDDDDAWPDNG 100

Query: 88  DFAEIEEYDV-------------NGSSR---RSPVKGCGVGSFRSGRSLQGAQEQLDIRN 131
           DF+++E YD              N S R   R P +  G+ S   G+S +     LD ++
Sbjct: 101 DFSDVE-YDAKRKRAKLQSKTRNNNSQRDNVRHPRESRGIKSSNDGKSFKVKSNHLDFQD 159

Query: 132 RRN-TIKNSFD-DTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTF 189
             N T+K+ F+ D    S +  ++GKVMT+ + E R+ RL+EEI+LDEKW PLL+YL+TF
Sbjct: 160 ITNDTVKHDFNIDEEVCSTNTGRKGKVMTKKSMEIRFPRLAEEIDLDEKWFPLLNYLTTF 219

Query: 190 GLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 249
           GLKESHF+QMYERHMPSLQINV SA+ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN
Sbjct: 220 GLKESHFLQMYERHMPSLQINVYSAQERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 279

Query: 250 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 309
           L+SHVAFL+SLGIP S++GQIIAA PSLFSYSVENSLKPTVRYLVEEVGI EK LGKVVQ
Sbjct: 280 LKSHVAFLLSLGIPTSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIQEKDLGKVVQ 339

Query: 310 LSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS 369
           LSPQ+LVQRID SWNTR +FLSKE+GAPRD+VVKMVTKHPQLLHYSI+DGLLPRINFLRS
Sbjct: 340 LSPQILVQRIDTSWNTRYMFLSKEIGAPRDNVVKMVTKHPQLLHYSINDGLLPRINFLRS 399

Query: 370 IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRI 429
           IGMRNS+ILKVL SLTQV SLSLEDNLKPKY YLINEL NEV+SLTKYPMYLSLSLDQRI
Sbjct: 400 IGMRNSEILKVLTSLTQVFSLSLEDNLKPKYMYLINELRNEVKSLTKYPMYLSLSLDQRI 459

Query: 430 RPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYER 489
           RPRHRFLVSLKKAPKGPFPLS F+PTDECFC++WA T++DKYL FR++LLLK+FA+KYER
Sbjct: 460 RPRHRFLVSLKKAPKGPFPLSSFVPTDECFCEQWAETSLDKYLEFRKRLLLKEFAEKYER 519

Query: 490 R 490
           R
Sbjct: 520 R 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576320|ref|XP_002529053.1| conserved hypothetical protein [Ricinus communis] gi|223531533|gb|EEF33364.1| conserved hypothetical protein [Ricinus communis]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/473 (72%), Positives = 396/473 (83%), Gaps = 26/473 (5%)

Query: 31  RFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFA 90
           + VVLSTHSNAKILK+NRKSR+GQTLS Y  D +EE E+DDDDD++  +  W +DD+ FA
Sbjct: 50  KLVVLSTHSNAKILKSNRKSRFGQTLSPYASDDDEEEEEDDDDDNDSDKS-WFSDDE-FA 107

Query: 91  EIEEYDVNGSSRRSPVKGCGVGSFRSGRSL---QGAQEQLDIRNRRNTIKNSFDDTYYNS 147
           E  ++ VNG              F+  + +   QG + QLD +  RNT +      +Y++
Sbjct: 108 EPVDFKVNGKR------------FKLQKKISERQGGRRQLDAKIGRNTQEKRIIGNFYHT 155

Query: 148 KD---------VDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQ 198
           K+         VD++ ++M++  TENRY++LSEEI+LD +WLPLLDYL TFGLKES FIQ
Sbjct: 156 KNKTKQPDSMHVDRKERLMSKEPTENRYEKLSEEIDLDNRWLPLLDYLCTFGLKESDFIQ 215

Query: 199 MYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI 258
           MYERHMPSLQINV SA+ERLEYLLSVGVK RD+RRILLRQPQILEYTV+NNL+SHVAFL 
Sbjct: 216 MYERHMPSLQINVSSAQERLEYLLSVGVKHRDIRRILLRQPQILEYTVDNNLKSHVAFLS 275

Query: 259 SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQR 318
           SLGIPNS+IGQIIA TPSLFSYSV+NSLKPTVRYLVEE+GINEK++GKVVQLSPQ+LVQR
Sbjct: 276 SLGIPNSRIGQIIAVTPSLFSYSVQNSLKPTVRYLVEELGINEKNIGKVVQLSPQILVQR 335

Query: 319 IDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDIL 378
           IDISWNTR IFLSKELGA ++ VVKMVTKHPQLLHYSIDDG +PRINFLRSIGMRNSDIL
Sbjct: 336 IDISWNTRYIFLSKELGASKESVVKMVTKHPQLLHYSIDDGFVPRINFLRSIGMRNSDIL 395

Query: 379 KVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVS 438
           KVL SLTQVLSLSLEDNLKPKY YLINEL NEVQSLTKYPMYLSLSLDQRIRPRH+FLV+
Sbjct: 396 KVLTSLTQVLSLSLEDNLKPKYKYLINELRNEVQSLTKYPMYLSLSLDQRIRPRHKFLVA 455

Query: 439 LKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG 491
           LKKAPKGPFPLS F+PTDECFCQ+WAGT+V+KYLAFRQ+LLL  FAKKYER G
Sbjct: 456 LKKAPKGPFPLSSFVPTDECFCQQWAGTSVEKYLAFRQQLLLNKFAKKYERLG 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499427|ref|XP_003518542.1| PREDICTED: uncharacterized protein LOC100809638 [Glycine max]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/495 (66%), Positives = 383/495 (77%), Gaps = 37/495 (7%)

Query: 10  FSSPATILHSHSLVQTR----PNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEE 65
           FS+P++      +++ R     +    V L+ HSN +ILK+NRKS+YG+ L  YD D E 
Sbjct: 16  FSTPSSFRSQFWILERRRLGSASLKNLVKLAAHSNPRILKSNRKSKYGEALLFYDSDEEM 75

Query: 66  EGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSSR--RSPVKG--------CGVGSFR 115
           + +  DDD+D+         D++F+E    DVN + R      KG         G+ SF 
Sbjct: 76  DDDVSDDDEDDDW-----LSDEEFSEPANLDVNNNKRFKSKTTKGKDRQQEWEWGLRSFD 130

Query: 116 SGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIEL 175
           + +S++  + +     +RN                 + GK  +RN  + +Y RLSEEI L
Sbjct: 131 NKQSIRLPRSERVASLQRN-----------------ESGK-HSRNVKDKKYPRLSEEIPL 172

Query: 176 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRIL 235
           D KWLPLLDYLSTFG+KESHF+QMYER M SLQINVCSA+ERLEYLLSVGVKQ DVRRIL
Sbjct: 173 DVKWLPLLDYLSTFGMKESHFVQMYERRMQSLQINVCSAQERLEYLLSVGVKQSDVRRIL 232

Query: 236 LRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVE 295
           LRQPQILEYTVENNL+S VAFL  LGIPNS+IGQIIAA PSLFSYSVENSLKPTVRYL+E
Sbjct: 233 LRQPQILEYTVENNLKSRVAFLRGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTVRYLIE 292

Query: 296 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYS 355
           EVGI EK LGKV+QLSPQ+LVQRIDISWNTR +FL+KELGAPRD +VKMVTKHPQLLHYS
Sbjct: 293 EVGIKEKDLGKVIQLSPQILVQRIDISWNTRSMFLTKELGAPRDSIVKMVTKHPQLLHYS 352

Query: 356 IDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT 415
           IDDGLLPRINFLRSIGM+NSDI+KVL SLTQVLSLSLE+NLKPKY YL+NEL+NEVQSLT
Sbjct: 353 IDDGLLPRINFLRSIGMKNSDIVKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLT 412

Query: 416 KYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFR 475
           KYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPL   +PTDECFCQ+WAGT++D+YLAFR
Sbjct: 413 KYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDRYLAFR 472

Query: 476 QKLLLKDFAKKYERR 490
           Q+LLLK FA+KYER+
Sbjct: 473 QRLLLKKFAEKYERK 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793029|ref|XP_002864399.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297310234|gb|EFH40658.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 323/494 (65%), Positives = 371/494 (75%), Gaps = 31/494 (6%)

Query: 3   LLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDD 62
           L  L S   SPAT   S         T  FVV   HSN KI+   +KSRYGQTLS YD D
Sbjct: 24  LFVLGSDKCSPATRRRSR-------KTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYDSD 76

Query: 63  SEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQG 122
            +EE +DD+DDD           +DDFAE+ EY+      +              ++ + 
Sbjct: 77  EDEELDDDEDDDW--------LLNDDFAEVTEYEKKKPKSQKQTMAKKGVKKGIVKNWEK 128

Query: 123 AQEQ------LDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELD 176
            +E       LDI   RN            S  +D RGKV +R   E  Y RLSEEI++D
Sbjct: 129 PEESETDEDDLDIGISRNR----------ESWRLDGRGKVSSRKYVEKLYPRLSEEIDID 178

Query: 177 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILL 236
            KW+PLLDYLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVGVK RD++R+LL
Sbjct: 179 PKWVPLLDYLSTFGLKESHFVQMYERHMPSLQINVLSAQERLDYLLSVGVKHRDIKRMLL 238

Query: 237 RQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 296
           RQPQIL+YTVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+PT+RYL+EE
Sbjct: 239 RQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEE 298

Query: 297 VGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSI 356
           VGI E  +GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV KHPQLLHYSI
Sbjct: 299 VGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSI 358

Query: 357 DDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTK 416
           DDG LPRINFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+NEL+NEV  LTK
Sbjct: 359 DDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTK 418

Query: 417 YPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQ 476
           YPMYLSLSLDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAGT+VD YLAFRQ
Sbjct: 419 YPMYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAGTSVDTYLAFRQ 478

Query: 477 KLLLKDFAKKYERR 490
           +LLLK+FA KY++R
Sbjct: 479 RLLLKEFANKYDKR 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240542|ref|NP_200369.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|9758592|dbj|BAB09225.1| unnamed protein product [Arabidopsis thaliana] gi|17065230|gb|AAL32769.1| Unknown protein [Arabidopsis thaliana] gi|23197866|gb|AAN15460.1| Unknown protein [Arabidopsis thaliana] gi|332009269|gb|AED96652.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 321/493 (65%), Positives = 377/493 (76%), Gaps = 24/493 (4%)

Query: 3   LLCLHSVFSSPATILHSHSLVQTRPN--TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYD 60
           L  L S   SPAT          RP+  T  FVV   HSN KI+   +KSRYGQTLS YD
Sbjct: 24  LFVLGSDKCSPAT---------RRPSRKTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYD 74

Query: 61  DDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNG--SSRRSPVKGCGVGSFRSGR 118
            D +++ +DDDDDDD          +DDFAE+ EY+     S +++  K           
Sbjct: 75  SDEDDDDDDDDDDDDW-------LLNDDFAEVTEYEKKKPKSHKQTIAKKSVKKGIVKPE 127

Query: 119 SLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEK 178
             +  ++ LD+        N+  +    S  +D RGK+ +R   E  Y RL+EEI++D K
Sbjct: 128 ESETDEDDLDL----GISPNATSEKKKESWRLDGRGKMSSRKYVEKLYPRLAEEIDIDPK 183

Query: 179 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQ 238
            +PLLDYLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVGVK RD++R+LLRQ
Sbjct: 184 CVPLLDYLSTFGLKESHFVQMYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQ 243

Query: 239 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 298
           PQIL+YTVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+PT+RYL+EEVG
Sbjct: 244 PQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVG 303

Query: 299 INEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDD 358
           I E  +GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV KHPQLLHYSIDD
Sbjct: 304 IKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDD 363

Query: 359 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYP 418
           G LPRINFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+NEL+NEV  LTKYP
Sbjct: 364 GFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYP 423

Query: 419 MYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKL 478
           MYLSLSLDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAGT+VD YLAFRQ+L
Sbjct: 424 MYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAGTSVDTYLAFRQRL 483

Query: 479 LLKDFAKKYERRG 491
           LLK+FA KY++RG
Sbjct: 484 LLKEFANKYDKRG 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494843|ref|XP_003617710.1| mTERF domain-containing protein [Medicago truncatula] gi|355519045|gb|AET00669.1| mTERF domain-containing protein [Medicago truncatula]

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 311/496 (62%), Positives = 370/496 (74%), Gaps = 45/496 (9%)

Query: 31  RFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDD--- 87
           +F VLS HSN KILKTNRKS YG+ LS YD D E E  D +DD+DE +++D   DDD   
Sbjct: 41  KFTVLSAHSNPKILKTNRKSTYGKFLSPYDSDDEIEEMDFEDDEDEDEDEDEDDDDDDDD 100

Query: 88  --------DFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNS 139
                    FAE    D+N   +R  +K   V   +     Q  +++  +R+  N     
Sbjct: 101 DDEDDDDDGFAE--PTDLNAKDKR--LKSKTVPDRQ-----QEKEKEKGVRSLNNGQSKR 151

Query: 140 FDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQM 199
              +   +   +       RN+ E +Y  LSEEI LDEKWLPLLDYLSTFG+KES FIQ+
Sbjct: 152 LPKSQRIASLQENNSAKFRRNSMEKKYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQI 211

Query: 200 YERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS 259
           YERHM S QINVCSA+ER++YL+S+GVK +D+RRILLRQPQILEYTVENNL++HVAFL+ 
Sbjct: 212 YERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMG 271

Query: 260 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRI 319
           LG+P++KIGQIIA+TPSLFSYSVE SLKPTVRYL+EEVGI EK LGKV+QLSPQ+LVQRI
Sbjct: 272 LGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRI 331

Query: 320 DISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILK 379
           DISWNTR +FL+KEL AP++ +VKMVTKHPQLLHYSIDDGLLPRINFLRSIGM+N+DILK
Sbjct: 332 DISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILK 391

Query: 380 VLRSLTQ-------------------------VLSLSLEDNLKPKYTYLINELHNEVQSL 414
           +L SLTQ                         VLSLSLE NLKPKY YL+NELHNEVQ+L
Sbjct: 392 ILTSLTQVIFAFIFVILFSLCTKGTRKRKRCYVLSLSLEANLKPKYLYLVNELHNEVQTL 451

Query: 415 TKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAF 474
           TKYPMYLSLSLDQRIRPRH+FLVSLKKAPKGPFPL   +PTDE FCQ+WAGTT+D+Y AF
Sbjct: 452 TKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAF 511

Query: 475 RQKLLLKDFAKKYERR 490
           RQ+LLLK  A+KY+R+
Sbjct: 512 RQRLLLKKLAEKYDRK 527

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737540|emb|CBI26741.3| unnamed protein product [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/414 (69%), Positives = 334/414 (80%), Gaps = 10/414 (2%)

Query: 29  TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDD---DDDEGKEDDWLAD 85
           T  F VLSTHSN +ILK+NR+SRYGQ LS YD D +  G++D D   DD++ + +++ AD
Sbjct: 46  TSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTD-DNAGDEDGDWFFDDEDSETEEFDAD 104

Query: 86  DDDFAEIEEYDVNGSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYY 145
              F   +  D    SRR   +   + S +S  S   ++ +LD++N +NTI +S+  T+ 
Sbjct: 105 RKKFNSQKGNDTRQGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNGKNTIGSSYH-TFN 163

Query: 146 NSKDVDQR-----GKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMY 200
            S+D D       GK+  R +TEN+Y RLSEEI+LDEKW PLLDYLSTFGLKESHFIQMY
Sbjct: 164 KSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLSTFGLKESHFIQMY 223

Query: 201 ERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISL 260
           ERHMPSLQIN CSA+ERLEYL SVGVK RD++RI+LRQPQILEYTVENNL+SHVAFL+ L
Sbjct: 224 ERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVENNLKSHVAFLVGL 283

Query: 261 GIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID 320
           GIP+S+IG +IAA PSLFSYSVENSLKPTVRYL+EEVGI +  LGKVVQLSPQ+LVQRID
Sbjct: 284 GIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKVVQLSPQILVQRID 343

Query: 321 ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKV 380
            SWNTR  FLS+ELGAPRD +VKMVTKHPQLLHYSI+DG LPRINFLRSIGMRNSDILKV
Sbjct: 344 NSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFLRSIGMRNSDILKV 403

Query: 381 LRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHR 434
           L +LTQVLSLSLEDNLKPKY YL+NEL NEV SLTKYPMYLSLSLDQRIRPRHR
Sbjct: 404 LTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQRIRPRHR 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115473031|ref|NP_001060114.1| Os07g0583200 [Oryza sativa Japonica Group] gi|27817836|dbj|BAC55604.1| unknown protein [Oryza sativa Japonica Group] gi|113611650|dbj|BAF22028.1| Os07g0583200 [Oryza sativa Japonica Group] gi|215701195|dbj|BAG92619.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637347|gb|EEE67479.1| hypothetical protein OsJ_24896 [Oryza sativa Japonica Group]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/396 (64%), Positives = 320/396 (80%), Gaps = 12/396 (3%)

Query: 103 RSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSK--------DVDQRG 154
           R+P+K  G       ++ +G Q +   R+R +T K   D  +  SK        D+D   
Sbjct: 106 RAPIKKPGREKPALKQNWEGRQPK--TRDRCDTSKK-VDALHAKSKASRSTGLVDIDNEV 162

Query: 155 KVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 214
           ++   + + + +Q+L EE + D+KWLPL+DYL TFGLKESHF  MYERHM   QI+  SA
Sbjct: 163 ELKNESISRSLFQKLQEEYDFDDKWLPLIDYLCTFGLKESHFTNMYERHMACFQISQASA 222

Query: 215 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 274
            ERLE+LLSVGVK +D++R+L+RQPQILEYT+ +NL+SHVAFL+ +G+P+++IGQII+A 
Sbjct: 223 EERLEFLLSVGVKSKDMKRMLVRQPQILEYTL-SNLKSHVAFLVGIGVPSARIGQIISAA 281

Query: 275 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 334
           PS FSYSVE SLKPT+RYL+EEVGI E  +GKVVQLSPQ+LVQRID +W +R +FLSKEL
Sbjct: 282 PSFFSYSVEQSLKPTIRYLIEEVGIEESDVGKVVQLSPQILVQRIDSAWKSRFLFLSKEL 341

Query: 335 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 394
           GAP+D++VKMVTKHPQLLHYSI+DG+LPRINFLRSIGMR++D+LKVL SLTQVLSLSLE+
Sbjct: 342 GAPKDNIVKMVTKHPQLLHYSIEDGILPRINFLRSIGMRDTDVLKVLTSLTQVLSLSLEE 401

Query: 395 NLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP 454
           NLKPKY YL+N+L N+VQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS F+P
Sbjct: 402 NLKPKYLYLVNDLKNDVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSSFVP 461

Query: 455 TDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERR 490
           TDE FC++WAGT+++KY  FRQ +LLK F++K  R+
Sbjct: 462 TDERFCKRWAGTSLEKYHTFRQSMLLKGFSEKTGRK 497

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.953	0.943	0.636	9.5e-153
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.437	0.759	0.282	3.1e-23
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.421	0.683	0.279	5.3e-22
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.458	0.380	0.280	8.2e-22
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.635	0.576	0.254	2.4e-21
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.478	0.857	0.299	1.9e-20
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.466	0.687	0.269	2.7e-19
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.551	0.549	0.257	3e-18
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.494	0.479	0.262	5.9e-18
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.507	0.388	0.277	2.1e-17

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1490 (529.6 bits), Expect = 9.5e-153, P = 9.5e-153
 Identities = 310/487 (63%), Positives = 362/487 (74%)

Query:    12 SPATILHSH--SLVQTRPN--TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYXXXXXXXX 67
             SP  +L S   S    RP+  T  FVV   HSN KI+   +KSRYGQTLS Y        
Sbjct:    22 SPLFVLGSDKCSPATRRPSRKTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYDSDEDDDD 81

Query:    68 XXXXXXXXXXXXXXXXXXXXXFAEIEEYDVNG-SSRRSPV--KGCGVGSFRSGRSLQGAQ 124
                                  FAE+ EY+     S +  +  K    G  +   S +  +
Sbjct:    82 DDDDDDDDWLLNDD-------FAEVTEYEKKKPKSHKQTIAKKSVKKGIVKPEES-ETDE 133

Query:   125 EQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLD 184
             + LD+        N+  +    S  +D RGK+ +R   E  Y RL+EEI++D K +PLLD
Sbjct:   134 DDLDL----GISPNATSEKKKESWRLDGRGKMSSRKYVEKLYPRLAEEIDIDPKCVPLLD 189

Query:   185 YLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEY 244
             YLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVGVK RD++R+LLRQPQIL+Y
Sbjct:   190 YLSTFGLKESHFVQMYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQY 249

Query:   245 TVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSL 304
             TVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+PT+RYL+EEVGI E  +
Sbjct:   250 TVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDV 309

Query:   305 GKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRI 364
             GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV KHPQLLHYSIDDG LPRI
Sbjct:   310 GKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRI 369

Query:   365 NFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLS 424
             NFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+NEL+NEV  LTKYPMYLSLS
Sbjct:   370 NFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLS 429

Query:   425 LDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFA 484
             LDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAGT+VD YLAFRQ+LLLK+FA
Sbjct:   430 LDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAGTSVDTYLAFRQRLLLKEFA 489

Query:   485 KKYERRG 491
              KY++RG
Sbjct:   490 NKYDKRG 496

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 63/223 (28%), Positives = 119/223 (53%)

Query:   215 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 274
             RE+L YL  + V   D  + L   P +    + +++ S    L S G+    +G+I+   
Sbjct:    33 REKLIYLQDLNV---DPHKALRVNPSLRSAPI-SSVVSVETLLSSTGLSRPAVGRILDMF 88

Query:   275 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 334
             P L +   E+ + P +R+L  E+ I+E+ + K +   P++L+  +D        FL K L
Sbjct:    89 PDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL-KTL 147

Query:   335 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS-IGMRNSDILKVLRSLTQVLSLSLE 393
             G    D +   +++  LL  +++  L+P+I +L   +G    ++ K++     +L+ S++
Sbjct:   148 GFVGRDTI--TSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVD 205

Query:   394 DNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 436
             +NL PK  + I E+  +V+ L ++P Y S SL+++I+PRHR L
Sbjct:   206 NNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 5.3e-22, P = 5.3e-22
 Identities = 60/215 (27%), Positives = 120/215 (55%)

Query:   248 NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKV 307
             ++++S + FL S GI  + + +I+   P + +  V   L P   +L  ++ + E +  +V
Sbjct:    85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRV 144

Query:   308 VQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL 367
             ++  P++L+  ++        +L + LG    D+  +  + P LL  S++  L+P++ FL
Sbjct:   145 IKKCPRLLISSVEDQLKPALFYLQR-LGLK--DLEALAYQDPILLVSSVEHTLIPKLRFL 201

Query:   368 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQ 427
              SIG    + + ++     + + S+E+N KPK  Y ++E+  ++++L ++P Y + SL++
Sbjct:   202 ESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEK 261

Query:   428 RIRPRHRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 461
             RI+PRH  L S+++  +   PLSL +  TDE F Q
Sbjct:   262 RIKPRH--LESMERGLE--LPLSLMLKSTDEEFEQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 8.2e-22, P = 8.2e-22
 Identities = 65/232 (28%), Positives = 124/232 (53%)

Query:   205 PSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 264
             PS+Q N         +  S  V + D+   + R P +L  +  +N+E  V     LG+ +
Sbjct:   330 PSIQENYSHIGS---FFYSESVLKMDIDHAIRRWPLLLGCSA-SNMEMMVKEFDKLGVRD 385

Query:   265 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWN 324
              ++G++I   P L     +  LK  V +L E++G  ++ +G+++   P++    I+ +  
Sbjct:   386 KRMGKVIPKMPQLLLCKPQEFLK-VVCFL-EDLGFQKEIVGQILCRCPEIFGCSIEKTLQ 443

Query:   325 TRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 384
              + IFL++  G       +++ K+P+ L Y  D  +LPR+ +L  IG+   +I  ++R  
Sbjct:   444 KKLIFLTR-FGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKF 502

Query:   385 TQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 436
             + +L  S++  L+PK+ +L+N +   V+ + +YP Y S SL++RI+PR R L
Sbjct:   503 SPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVL 554

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 83/326 (25%), Positives = 158/326 (48%)

Query:   150 VDQRGKVMTRNAT--E--NRY-QRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHM 204
             +D  GK+  R +T  E   RY Q L   + +D    P++ YL    +K S   ++ ER+ 
Sbjct:   183 LDYLGKLGVRKSTFTEFLRRYPQVLHSSVVID--LAPVVKYLQGLDIKPSDVPRVLERYP 240

Query:   205 PSLQINVCSARER-LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP 263
               L   +       + YL+ +GV +R++  IL R P+IL   V   ++  V +L  LGIP
Sbjct:   241 EVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIP 300

Query:   264 NSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISW 323
                  ++I   P +  + +++++KP V+ L ++  + E SL  ++   P+++   +    
Sbjct:   301 RLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSIIAQYPEIIGIDLKPKL 359

Query:   324 NTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRS 383
             +T+   L   +    +D+  ++ + PQ +  S +  +L  I+FL   G       +++  
Sbjct:   360 DTQRKLLCSAIHLNPEDLGSLIERMPQFVSLS-ESPMLKHIDFLTKCGFSIDQTREMVIG 418

Query:   384 LTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP 443
               QVL+L+L   +K  + Y   E+   +Q L  +P + +  L+  ++PRH+ ++  KK  
Sbjct:   419 CPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKII--KKGI 475

Query:   444 KGPFPLSLFIPTDECFCQKWAGTTVD 469
             K      L   +DE F Q+ +  T+D
Sbjct:   476 KCSLAWMLNC-SDEKFEQRMSYDTID 500

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 76/254 (29%), Positives = 129/254 (50%)

Query:   213 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 272
             S RE L +L S+G+  ++ R      P   + +V   + S V  L S GI +    +++ 
Sbjct:    35 SHRENLRHLSSLGIVPQNPRLA----PPANDLSV---ILSAVNLLKSKGISDEDFPRLVF 87

Query:   273 ATPSLFSYSVENS-LKPTVRYLVEEVGIN-EKSLGKVVQLSPQVLVQRIDISWNTRCIFL 330
               P LFS + + S L P   +L  E+G + E+S G +V   P +L   ++       ++L
Sbjct:    88 LCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNC-PNILFSDVEYCLRPTLVYL 146

Query:   331 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSL 390
              KELG    +       H  +L+  ++  L  ++ FL+SIG  + +  +V   +  +   
Sbjct:   147 -KELGVRNLNRASKTNAH--VLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFGY 202

Query:   391 SLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS 450
             S+EDNL+PK+ +L+ ++  E++ L K+P Y + SL +RIRPRH  L   KK  +    LS
Sbjct:   203 SVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLK--KKNVR--VSLS 258

Query:   451 -LFIPTDECFCQKW 463
              + +  D+ F  KW
Sbjct:   259 RMLMWGDQKFYSKW 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 67/249 (26%), Positives = 125/249 (50%)

Query:   213 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS--LGIPNSKIGQI 270
             S  E+L YL S+G+   D   ++ R P +L  T  + +ES V ++ +  +        ++
Sbjct:    72 SIHEKLIYLDSLGI---DFLTLINRHPPLLS-TALSAVESVVDYMTTPPINFTLQDFRRL 127

Query:   271 IAATPSLFSYSVENSLKPTVRYLVEEVGINEK-SLGKVVQLSPQVLVQRIDISWNTRCIF 329
             ++  P L +  + +   P + +L+ EVG++    L + ++  P++L   +D        F
Sbjct:   128 VSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYF 187

Query:   330 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 389
             L + +G      +    KH  LL  S+D+ L+PRI++   +G        + +   Q+ +
Sbjct:   188 LQR-IG------ILDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   390 LSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-FP 448
              S+ +N +PK  YL+ E+  +V+ + ++P Y S SL+ RI+PRH        A KG  FP
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEAC-----AAKGVRFP 295

Query:   449 LSLFIPTDE 457
             L + + T+E
Sbjct:   296 LPVMLKTNE 304

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 73/284 (25%), Positives = 136/284 (47%)

Query:   158 TRNATENRYQR-LSEEIELDEKWL--PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 214
             T +A + R  R +S   ELD +    P   YL   GL     I+   R   +        
Sbjct:   172 TDSAADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQ-IKTITRKFAAFPYYSLDG 230

Query:   215 RER--LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 272
             + +  +E+LL +G+ + D+  IL ++PQI   ++ +NL+  +AFL +LGI  ++  +II+
Sbjct:   231 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 290

Query:   273 ATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSK 332
               P++ +YS    L  TV +L  + G+ E+ +G+++   P ++   ++        +  +
Sbjct:   291 RFPAILTYS-RQKLTSTVEFL-SQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYF-R 347

Query:   333 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 392
              L     DV  ++ + PQ    SI+  L P   F    G    +I  ++     + + SL
Sbjct:   348 SLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSL 404

Query:   393 EDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 436
             ++N+ PK+ Y    +      L K+P +   SL +RI+PR+  +
Sbjct:   405 KENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELV 447

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
 Identities = 66/251 (26%), Positives = 130/251 (51%)

Query:   220 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 279
             YL+S+GV  RD+  ++ + P +L   V   ++  V +LIS+G+P   + +++     +  
Sbjct:   222 YLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVG 281

Query:   280 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 339
             Y++E ++KP V  L+   G+ ++ L  ++   PQ+L   +    +T+  F S +L    +
Sbjct:   282 YNLEETVKPNVDCLIS-FGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPE 340

Query:   340 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 399
                ++V K PQ++     + ++  I FL     +  DI K++    Q+L   +E  +K  
Sbjct:   341 GFARVVEKMPQIVSLK-QNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVE-LMKNS 398

Query:   400 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP-TDEC 458
             Y +   E+   ++ L +YP Y + SL+ RI+PR++ L S  K  +    L+ F+  +D+ 
Sbjct:   399 YYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQS--KGIRSS--LNWFLNCSDQR 454

Query:   459 FCQKWAGTTVD 469
             F ++  G  +D
Sbjct:   455 FEERLQGNFID 465

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 77/277 (27%), Positives = 135/277 (48%)

Query:   183 LDYLSTFGL--KESHFIQMYERHMPSLQINVCSARER----LEYLLSVGVKQRDVRRILL 236
             ++YL  FGL  +E   +  Y+ H+       CS  ER    ++Y   +G+ +  ++RIL+
Sbjct:   356 INYLKEFGLSTEEVGRLLAYKPHLMG-----CSIEERWKPLVKYFYYLGIPKEGMKRILV 410

Query:   237 RQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 296
              +P +    +E  +   V FL  +GIPN  IG ++   PSL + S+   ++P V +L+  
Sbjct:   411 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 470

Query:   297 VGINEKSLGKVVQLSPQVLVQRID--ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHY 354
              G+ +K +GKV+ + P +L   I   +  N R  ++S  LG     + +M+   P LL Y
Sbjct:   471 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMR-YYIS--LGIRFYQLGEMIADFPMLLRY 527

Query:   355 SIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSL 414
             ++D+ L P+  +LR   +R    L+ L    +  S SLE  + P++T ++    N V   
Sbjct:   528 NVDN-LRPKYRYLRRTMIRP---LQDLIEFPRFFSYSLERRIIPRHTIMVE---NRVNFK 580

Query:   415 TKYPMYLS-LSLDQRIRP----RHRFLVSLKKAPKGP 446
              +Y +  +    ++R+R     R RF   L      P
Sbjct:   581 LRYMLACTDEEFERRVRDKVERRERFEAGLDSEDSQP 617

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.4626.1 hypothetical protein (444 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	491
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	9e-33
pfam02536	345	pfam02536, mTERF, mTERF	5e-21
pfam02536	345	pfam02536, mTERF, mTERF	4e-17
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-16
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-07
pfam02536	345	pfam02536, mTERF, mTERF	8e-05
pfam12253	76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	3e-04
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	0.001
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam05285	317	pfam05285, SDA1, SDA1	0.003

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  129 bits (327), Expect = 9e-33
 Identities = 71/252 (28%), Positives = 135/252 (53%), Gaps = 10/252 (3%)

Query: 220 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 279
           YL+S+GV  RD+  +L R P+IL   V NN++  V +L SLG+P   + +I+   P +  
Sbjct: 202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILG 261

Query: 280 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 339
           + +E ++KP V  L+ E G+ +++L  V+   P +L   +      +  +L+ +L    +
Sbjct: 262 FDLEETVKPNVECLL-EFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPE 320

Query: 340 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 399
           D  +++ K PQ++  +  +  L  + FLR  G    D+ K++    Q+L+L+LE  +KP 
Sbjct: 321 DFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPS 378

Query: 400 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG-PFPLSLFIP-TDE 457
             +   E+   ++ L ++P Y +  L+ RI+PR+  +       KG    L+ F+  +D+
Sbjct: 379 LEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAK-----KGIKCSLAWFLNCSDD 433

Query: 458 CFCQKWAGTTVD 469
            F Q+ +G  ++
Sbjct: 434 KFEQRMSGDFIE 445

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 93.7 bits (233), Expect = 5e-21
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 20/288 (6%)

Query: 181 PLLDYLSTFGLKESHFIQMYERHMPSL--QINVCSARERLEYLLSVGVKQRDVRRILLRQ 238
            + D+L    + +       E++  SL    N    R  +  L  +GV  + +  +L+ +
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIR-NVSVLRELGVPPKLLFSLLISR 129

Query: 239 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 298
           P+      +   E  +  ++ +G   +   ++IA  P L  YS + ++KP V +L     
Sbjct: 130 PR--PVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL----- 182

Query: 299 INEKSLGKVVQLSPQVLVQR---IDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYS 355
              KSLG  V+    +L +    +  S   +             + + ++ K PQ + YS
Sbjct: 183 ---KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYS 239

Query: 356 IDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT 415
            +  +L +I FL  +G    +I K+++   Q+L LS+E  +K K  +L+ E++  ++ L 
Sbjct: 240 -EQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVE-KVKKKTEFLVKEMNWPLKELV 297

Query: 416 KYPMYLSLSLDQRIRPR-HRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 461
           ++P     SL++RI+PR +     + K       LS  +  TDE F Q
Sbjct: 298 EFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 217 RLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPS 276
           +L++L S G  + ++ +I+   P+IL      ++ S   FL  + + +      +   P 
Sbjct: 36  KLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPE 95

Query: 277 LFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 336
                   +    V  L E +G+  K L  ++   P+ +  +         +    E+G 
Sbjct: 96  SLPQGNNGNKIRNVSVLRE-LGVPPKLLFSLLISRPRPVCGKEVFE---ESLKKVVEMGF 151

Query: 337 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 396
                 +++ K P+LL YS D  + P + FL+S+G    D+  +L+   ++L  S +  L
Sbjct: 152 DPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKL 211

Query: 397 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSL 439
           + +       L   +  + K P ++S S +Q+I  +  FL+ L
Sbjct: 212 QTQEILKTCGLLEFLSVIKKMPQFVSYS-EQKILNKIEFLLGL 253

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 53/227 (23%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 215 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 274
           RER+E+L  +G+   D    +   P +L  +V+ N+   + +L  LG+  S + +++   
Sbjct: 93  RERVEFLHKLGLTIED----INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRY 148

Query: 275 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 334
           P +   SV   L P V+YL + + +  + + +V++  P++L  +++ + +T   +L   +
Sbjct: 149 PQVLHASVVVDLAPVVKYL-QGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVS-I 206

Query: 335 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 394
           G    D+  M+T+ P++L   + + + P++++L S+G+    + ++L     +L   LE+
Sbjct: 207 GVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEE 266

Query: 395 NLKPKYTYLI--NELHNEVQSL-TKYPMYLSLSLDQRIRPRHRFLVS 438
            +KP    L+        + S+  +YP  L L L  ++  +  +L S
Sbjct: 267 TVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTS 313

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 333 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 392
           +LG  R  + +++ ++PQ+LH S+   L P + +L+ + ++  DI +VL    ++L   L
Sbjct: 133 KLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKL 192

Query: 393 EDNLKPKYTYL--INELHNEVQS-LTKYPMYLSLSLDQRIRPRHRFLVSL 439
           E  +     YL  I     ++   LT++P  L + +   I+P+  +L SL
Sbjct: 193 EGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESL 242

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 330 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 389
           L + LG     +  ++  +P LL    +  L P++ FL+S G   S++ K++ ++ ++L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 390 LSLEDNLKPKYTYL---INELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP 446
                ++   Y +L   I    ++   L KYP  L    +         L  L   PK  
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLL 122

Query: 447 FPL 449
           F L
Sbjct: 123 FSL 125

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 59 YDDDS------EEEGEDDDDDDDEGKEDDWLADDDDF 89
          YD DS      EEEGED + +D+E +E+D   D D F
Sbjct: 40 YDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDDMDGF 76

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 326 RCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLT 385
           R  FL K LG   +D+     ++P +L  S+   ++P +++L  +G+  S + ++LR   
Sbjct: 95  RVEFLHK-LGLTIEDI----NEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149

Query: 386 QVLSLSLEDNLKPKYTYLIN---ELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA 442
           QVL  S+  +L P   YL     +  +  + L +YP  L   L+  +     +LVS+  A
Sbjct: 150 QVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVA 209

Query: 443 PK 444
           P+
Sbjct: 210 PR 211

Length = 487

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 343 KMVTKHPQLLHYSIDDGLLPRINFLRSIGMR 373
           K+V K PQ+L YS +  L P++ FL+ +G  
Sbjct: 2   KIVKKFPQILGYS-EKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 60 DDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
          +D+ +E+    DDDDD+  +DD    DDD  ++++ D
Sbjct: 58 EDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 48  RKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
           +K    Q L   DDD EEE  + ++D+D   E +W+  + D  EIE  D
Sbjct: 84  KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESD-KEIESSD 131

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	491
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.93
KOG1267	413	consensus Mitochondrial transcription termination	99.68
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	96.49
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.31
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.29
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	96.02
KOG3130	514	consensus Uncharacterized conserved protein [Funct	94.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	94.35
KOG3130	514	consensus Uncharacterized conserved protein [Funct	92.3
PF08595	149	RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904	92.25
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	91.84
PF11702	507	DUF3295: Protein of unknown function (DUF3295); In	90.35
PTZ00415	2849	transmission-blocking target antigen s230; Provisi	88.81
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	88.72
PF12253	77	CAF1A: Chromatin assembly factor 1 subunit A; Inte	88.27
KOG1824	1233	consensus TATA-binding protein-interacting protein	87.82
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	86.68
KOG3064	303	consensus RNA-binding nuclear protein (MAK16) cont	85.34
KOG3241	227	consensus Uncharacterized conserved protein [Funct	83.84
PF02724	622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	83.03
PF04147	840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	80.98
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	80.09

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=3.5e-50  Score=430.44  Aligned_cols=297  Identities=25%  Similarity=0.522  Sum_probs=205.0

Q ss_pred             hhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccc
Q 011206          165 RYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILE  243 (491)
Q Consensus       165 ~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kli~~~P~iL~  243 (491)
                      +||+++ .+++++++.|+++||.++|++.++|++++.++|.+|.++++ ++.++++||+++|++.++|.+++.++|++|+
T Consensus       111 ~~P~iL-~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~  189 (487)
T PLN03196        111 EYPLVL-GCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLG  189 (487)
T ss_pred             cCcHHh-hcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhc
Confidence            356666 55555566666666666666666666666666666655554 4555556655555555555555555555555


Q ss_pred             cccccchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccc---
Q 011206          244 YTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID---  320 (491)
Q Consensus       244 ~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e---  320 (491)
                      +++++++.++++||.++|++.++|+++|.++|++|+++++++++|+++||+ ++|++.++|.+++.++|++|+++++   
T Consensus       190 ~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~-~lGv~~~~I~~il~~~P~iL~~sle~~l  268 (487)
T PLN03196        190 FKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLE-SLGLPRLAVARILEKRPYILGFDLEETV  268 (487)
T ss_pred             CCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHH-HcCCCHHHHHHHHHhCCceeEcCHHHhH
Confidence            555555555555555555555555555555555555555555555555553 4555555555555555555555544   


Q ss_pred             ---------------------------------hhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHH
Q 011206          321 ---------------------------------ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL  367 (491)
Q Consensus       321 ---------------------------------~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL  367 (491)
                                                       ..+.+++.||.+.+|++++++..+++++|++++.+ +++|.++++||
T Consensus       269 kp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~kl~~kvefL  347 (487)
T PLN03196        269 KPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFL  347 (487)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HHHHHHHHHHH
Confidence                                             44444555555556666666666666666666666 56789999999


Q ss_pred             HHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCCCCCC
Q 011206          368 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPF  447 (491)
Q Consensus       368 ~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~k~~~  447 (491)
                      +++||+.++|+.||.++|+||++|+ ++|++|++||+++||++.++|++||++|+||||+||+|||++|+.-| +   ..
T Consensus       348 ~~~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kG-l---~~  422 (487)
T PLN03196        348 RGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKG-I---KC  422 (487)
T ss_pred             HHcCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcC-C---CC
Confidence            9999999999999999999999995 99999999999999999999999999999999999999999987422 2   35


Q ss_pred             Ccccc-ccCHHHHHHHhcCCChH
Q 011206          448 PLSLF-IPTDECFCQKWAGTTVD  469 (491)
Q Consensus       448 ~L~~l-~~sdk~F~~~~~~~s~e  469 (491)
                      +|.++ .+||+.|+++|+.-++|
T Consensus       423 sL~~~L~~sd~~F~~r~v~~y~e  445 (487)
T PLN03196        423 SLAWFLNCSDDKFEQRMSGDFIE  445 (487)
T ss_pred             CHHHHhccCHHHHHHHHhhhccc
Confidence            77775 69999999999665544

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=4.4e-44  Score=368.36  Aligned_cols=296  Identities=33%  Similarity=0.605  Sum_probs=244.8

Q ss_pred             hhhhhhhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCc-cCHHHHHHHHHHCCCChhhHHHHHhhC
Q 011206          160 NATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINV-CSARERLEYLLSVGVKQRDVRRILLRQ  238 (491)
Q Consensus       160 ~~~~~~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~-~~l~~~l~fL~slGls~~~l~kli~~~  238 (491)
                      +..+.++|.++ -++.++++.|+++||.+.|++.++|++++.++|.++..+. .++.+.++||+++|++++++.+++.++
T Consensus        15 ~~~i~~~P~~l-~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~   93 (345)
T PF02536_consen   15 SKLIRRYPRLL-LCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRY   93 (345)
T ss_dssp             HHHHH-H-HHH-HT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-
T ss_pred             HHHHHhCCceE-EecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            44567899999 8899999999999999999999999999999999999985 579999999999999999999999999


Q ss_pred             CcccccccccchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecc
Q 011206          239 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQR  318 (491)
Q Consensus       239 P~iL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~  318 (491)
                      |++|..+.+.++.++++||+++|++.+.+.+++..+|.++... + .+.+.+++|. ++|++++.+.+++..+|.++...
T Consensus        94 p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~-~~~~~v~~l~-~lG~~~~~~~~vi~~~P~~l~~~  170 (345)
T PF02536_consen   94 PRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-E-KIKERVEFLK-ELGFDPEKIGRVIAKNPRLLLSD  170 (345)
T ss_dssp             SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--H-HHHCHHHHHC-CCTSSHHHHCCCHHHHHHHHCGS
T ss_pred             chhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-h-HHHHHHHHHH-HhCCCchhhcccccccchhhccc
Confidence            9999998877999999999999999998889998888776655 3 6999999995 89999999999999999888888


Q ss_pred             cchhhhhhHHHHHhhcCCChhhHHHhhhcccccccccccc--------------------------------chHHHHHH
Q 011206          319 IDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDD--------------------------------GLLPRINF  366 (491)
Q Consensus       319 ~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~--------------------------------~L~~kvef  366 (491)
                      .+..|+++++|| +++|++.+++.+++.++|.++..+.+.                                ++.++++|
T Consensus       171 ~~~~~~~~v~~L-~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~  249 (345)
T PF02536_consen  171 SESELKPKVEFL-RSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEF  249 (345)
T ss_dssp             CCCCCHHHHHHH-HHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH-HhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHH
Confidence            877899999999 589999999999999999999988755                                68999999


Q ss_pred             HHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCC-CC
Q 011206          367 LRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP-KG  445 (491)
Q Consensus       367 L~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~-k~  445 (491)
                      |.++||+.++|++|+.++|+||++|. ++|++|++||+++||++.++|+++|++|+||+|+||+|||+++++|+... +.
T Consensus       250 L~~lG~s~~ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~~~  328 (345)
T PF02536_consen  250 LQSLGFSEEEIAKMVRRFPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGLII  328 (345)
T ss_dssp             HHTTT--HHHHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTTGG
T ss_pred             HHHhcCcHHHHHHHHHhCcchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcCCC
Confidence            99999999999999999999999995 56999999999999999999999999999999999999999999997533 23


Q ss_pred             CCCcccc-ccCHHHHHH
Q 011206          446 PFPLSLF-IPTDECFCQ  461 (491)
Q Consensus       446 ~~~L~~l-~~sdk~F~~  461 (491)
                      ..++.++ .+||++|++
T Consensus       329 ~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  329 NPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             GGGS-HHHHHHHHHHT-
T ss_pred             CCCHHHHhhccHHHhcC
Confidence            4567664 699999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=3.8e-40  Score=353.09  Aligned_cols=256  Identities=23%  Similarity=0.440  Sum_probs=224.3

Q ss_pred             CChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHH
Q 011206          177 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVA  255 (491)
Q Consensus       177 ~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~  255 (491)
                      +.+.++++||+++||+.++|.    ++|.+|.++++ ++.|+++||.++|++..+|.++|.++|+||..+++++|.|+++
T Consensus        90 ~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~  165 (487)
T PLN03196         90 DVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVK  165 (487)
T ss_pred             HHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHH
Confidence            367789999999999999997    68999999986 7999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcC
Q 011206          256 FLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG  335 (491)
Q Consensus       256 fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG  335 (491)
                      ||+++|++.++|++++.++|++|++++++++.++++||. .+|++.+++++++.++|++|+++++.+++++++|| .++|
T Consensus       166 fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~-~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL-~~lG  243 (487)
T PLN03196        166 YLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLV-SIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL-ESLG  243 (487)
T ss_pred             HHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHH-HcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHH-HHcC
Confidence            999999999999999999999999999999999999996 79999999999999999999999999999999999 5899


Q ss_pred             CChhhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHH--
Q 011206          336 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQS--  413 (491)
Q Consensus       336 ~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~--  413 (491)
                      ++.+++.+++.++|++|+++++++++++++||.++|++.+.+..++.++|.+|++++++++.+++.||.+.||++.+.  
T Consensus       244 v~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~  323 (487)
T PLN03196        244 LPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFG  323 (487)
T ss_pred             CCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHH
Confidence            999999999999999999998889999999999999998888888888888888777666766666666666665432  


Q ss_pred             --HhhcCcccccCcccchHHHHHHHHHh
Q 011206          414 --LTKYPMYLSLSLDQRIRPRHRFLVSL  439 (491)
Q Consensus       414 --I~k~P~lLs~SLekrI~PR~~fL~~L  439 (491)
                        +.++|.++++|.+ ++.+|.+|++.+
T Consensus       324 ~~v~k~P~il~lSe~-kl~~kvefL~~~  350 (487)
T PLN03196        324 RVIEKLPQIVSLNRN-VALKHVEFLRGR  350 (487)
T ss_pred             HHHHhcchhhcccHH-HHHHHHHHHHHc
Confidence              3445555555543 455555555544

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.1e-34  Score=293.61  Aligned_cols=250  Identities=31%  Similarity=0.560  Sum_probs=209.9

Q ss_pred             HHHhcCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCC
Q 011206          184 DYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGI  262 (491)
Q Consensus       184 ~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGl  262 (491)
                      ++|+++||++++|.++++++|.++.++++ ++.++++||.++|++..++.+++.++|.+|..++++++.|+++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            68999999999999999999999999987 69999999999999999999999999999999998999999999999999


Q ss_pred             CchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHH
Q 011206          263 PNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVV  342 (491)
Q Consensus       263 s~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~  342 (491)
                      +++++++++.++|++|..+.+.++.+++.||+ ++|++++.+..++..+|.++...  ..+.+.++++ .++|++++++.
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~-~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l-~~lG~~~~~~~  157 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLR-SLGVPPSQIISLLISRPPLFLSS--EKIKERVEFL-KELGFDPEKIG  157 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHH-HTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHH-CCCTSSHHHHC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHh-hcCCcHHHHHHHHHhcCccccch--hHHHHHHHHH-HHhCCCchhhc
Confidence            99999999999999999887778999999996 89999998888888888876666  4689999999 59999999999


Q ss_pred             HhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccc----------------------------
Q 011206          343 KMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED----------------------------  394 (491)
Q Consensus       343 ~ml~~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~----------------------------  394 (491)
                      +++.++|.++....++.|+++++||+++||+.+++.+++.++|.+|..|+++                            
T Consensus       158 ~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~  237 (345)
T PF02536_consen  158 RVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILS  237 (345)
T ss_dssp             CCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------T
T ss_pred             ccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccc
Confidence            9999999888888789999999999999999999999999999999999765                            


Q ss_pred             ----cHHHHHHHHHHHhCCch----HHHhhcCcccccCcccchHHHHHHHHHh
Q 011206          395 ----NLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSL  439 (491)
Q Consensus       395 ----~L~pk~~fL~~~mg~~~----~~I~k~P~lLs~SLekrI~PR~~fL~~L  439 (491)
                          ++.++++||.+ +|++.    ..+.++|.+|+||.++ ++|+++|+..-
T Consensus       238 ~~~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~  288 (345)
T PF02536_consen  238 LSEEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKE  288 (345)
T ss_dssp             HHHHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHC
T ss_pred             cchHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHH
Confidence                58888998887 89885    4568899999999985 99999999853

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.93  E-value=1.4e-25  Score=237.21  Aligned_cols=290  Identities=27%  Similarity=0.436  Sum_probs=240.9

Q ss_pred             CCCcccccCcccccccchhhhhhhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHH
Q 011206          143 TYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYL  221 (491)
Q Consensus       143 ~~~~~~~~~~~g~l~~~~~~~~~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL  221 (491)
                      ++-.||+++++|...+.+....+...    ..-..++.+++++|+++|++..+|..++..+|.++..+.+ .+.+++.+|
T Consensus        59 ~f~~s~~~~s~~~~~~~~~~~~~~~~----~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l  134 (413)
T KOG1267|consen   59 NFESSYLVDSLGLSIKLARKLSREVS----SEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLL  134 (413)
T ss_pred             CcceeeeccccccchhhHHHHHHHHH----hhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhh
Confidence            45578999999842223333333222    2236799999999999999999999999999999988876 588888899


Q ss_pred             HHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcC--CCchhhhhhhhhcccccccccccchhHHHHHHHHHhCC
Q 011206          222 LSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLG--IPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGI  299 (491)
Q Consensus       222 ~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lG--ls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGv  299 (491)
                      .+.|++...+.+++...|.+|......++.+.++||++++  .....+.+++...|......  ..+. ++++++ .+|+
T Consensus       135 ~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~--~~v~-~~~~~~-~lg~  210 (413)
T KOG1267|consen  135 DSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNE--NSVE-RLDIRR-ELGV  210 (413)
T ss_pred             hccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccc--cccc-cchhhH-HhCC
Confidence            9999999999999999999999888889999999999985  77777887777766333221  1244 777775 7888


Q ss_pred             ChhhHHHHHhhCccce--------------------------------ecccchhhhhhHHHHHhhcCCChhhHHHhhhc
Q 011206          300 NEKSLGKVVQLSPQVL--------------------------------VQRIDISWNTRCIFLSKELGAPRDDVVKMVTK  347 (491)
Q Consensus       300 s~~~l~kll~~~P~lL--------------------------------~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~  347 (491)
                      .+..+..++..+|..+                                .+..+.++++++.+| +.+||+.++++.|+.+
T Consensus       211 ~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l-~~~Gf~~~di~~~~~k  289 (413)
T KOG1267|consen  211 KPRLLKSLLESQPRPVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVL-KSLGFSREEIWKMVKK  289 (413)
T ss_pred             CHHHHHHHHhcCccceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHH-HHcCCCHHHHHHHHHh
Confidence            8887776555554444                                334566899999999 5889999999999999


Q ss_pred             ccccccccccc---------------------------chHHHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHH
Q 011206          348 HPQLLHYSIDD---------------------------GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKY  400 (491)
Q Consensus       348 ~P~lL~~sie~---------------------------~L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~  400 (491)
                      +|++|+++.+.                           .+.++++|+...|++..++..|++++|+++.+|+++.++++.
T Consensus       290 ~P~~l~~s~~~~~~~~~~~~~~~~~~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~  369 (413)
T KOG1267|consen  290 CPQILGYSVKKNLKTTEYLLKNPKHILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKY  369 (413)
T ss_pred             CchheEeehhhhhHHHHHHHhcchhhhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhH
Confidence            99999999653                           388999999999999999999999999999999866999999


Q ss_pred             HHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhc
Q 011206          401 TYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKK  441 (491)
Q Consensus       401 ~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~  441 (491)
                      +|+...|+++.+.++.+|.++.|++++|+.||+.+..+++.
T Consensus       370 ~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~  410 (413)
T KOG1267|consen  370 EYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGV  410 (413)
T ss_pred             HHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhc
Confidence            99999999999999999999999999999999999998763

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.68  E-value=1.5e-16  Score=168.45  Aligned_cols=241  Identities=25%  Similarity=0.438  Sum_probs=184.3

Q ss_pred             hcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCchh
Q 011206          187 STFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSK  266 (491)
Q Consensus       187 ~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~~~  266 (491)
                      .++|.+...+..+...   +...+..+..+.+++|.++|++..++.+++..+|.++..+.++.+.+++.+|...|++...
T Consensus        67 ~s~~~~~~~~~~~~~~---~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~  143 (413)
T KOG1267|consen   67 DSLGLSIKLARKLSRE---VSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSE  143 (413)
T ss_pred             cccccchhhHHHHHHH---HHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccc
Confidence            4455555555554432   2234456788999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccccccccchhHHHHHHHHHhC--CChhhHHHHHhhCccceec--ccch---------------------
Q 011206          267 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVG--INEKSLGKVVQLSPQVLVQ--RIDI---------------------  321 (491)
Q Consensus       267 I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lG--vs~~~l~kll~~~P~lL~~--~~e~---------------------  321 (491)
                      +..++...|.+|+.+...++.+.++||. .++  .....+.++....|.....  .+..                     
T Consensus       144 l~~i~s~~~~il~~~~~~~~~~~~~~l~-~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~  222 (413)
T KOG1267|consen  144 LSSIVSVVPKILLKSKGESLSTFIEFLK-SIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQ  222 (413)
T ss_pred             cchhhhccHHHHHhhcCCchhhHHHHhh-ccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcC
Confidence            9999999999999877778999999996 553  6666677777666633222  1110                     


Q ss_pred             --------hhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCcc
Q 011206          322 --------SWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLE  393 (491)
Q Consensus       322 --------~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle  393 (491)
                              .+...+.++ ..+||.+..  +++.+.|.++.++.++++++++++|.+.||+.+||.+|++++|++|++| +
T Consensus       223 ~~~~~~~~~l~~~~~~i-~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s-~  298 (413)
T KOG1267|consen  223 PRPVLLYLKLKARLPFL-LTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYS-V  298 (413)
T ss_pred             ccceeeehhhhhhhhhH-HHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEee-h
Confidence                    111222333 244444443  4455566666667899999999999999999999999999999999999 5


Q ss_pred             ccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhh
Q 011206          394 DNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLK  440 (491)
Q Consensus       394 ~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~  440 (491)
                      +++..+++|+.+.    ...+.++|+++++|. ..+.+|++++..+|
T Consensus       299 ~~~~~~~~~~~~~----~~~~~k~p~~l~~s~-~~l~~~ie~l~~~g  340 (413)
T KOG1267|consen  299 KKNLKTTEYLLKN----PKHILKFPQLLRSSE-DKLKPRIEFLLSLG  340 (413)
T ss_pred             hhhhHHHHHHHhc----chhhhhhhhhhhccc-hhhhhhHHHHHHcC
Confidence            7888888888876    233888898887775 47888988888776

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=96.49  E-value=0.0029  Score=62.11  Aligned_cols=7  Identities=29%  Similarity=0.306  Sum_probs=2.8

Q ss_pred             ccCCccc
Q 011206           44 LKTNRKS   50 (491)
Q Consensus        44 ~~~~~~~   50 (491)
                      .|=.|+.
T Consensus       232 hkyGRQ~  238 (314)
T PF06524_consen  232 HKYGRQG  238 (314)
T ss_pred             chhcccc
Confidence            3334443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.31  E-value=0.0025  Score=41.33  Aligned_cols=28  Identities=43%  Similarity=0.669  Sum_probs=18.0

Q ss_pred             HHHhccchhccCccccHHHHHHHHHHHhCC
Q 011206          380 VLRSLTQVLSLSLEDNLKPKYTYLINELHN  409 (491)
Q Consensus       380 ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~  409 (491)
                      ++.++|.+|+++ +++|+++++||. .+|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~-~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLK-ELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHH-HcCC
Confidence            456666666666 566666666666 5554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.29  E-value=0.0031  Score=40.87  Aligned_cols=28  Identities=50%  Similarity=0.813  Sum_probs=17.5

Q ss_pred             HHhhCCcccccccccchHHHHHHHHHcCC
Q 011206          234 ILLRQPQILEYTVENNLESHVAFLISLGI  262 (491)
Q Consensus       234 li~~~P~iL~~s~e~~L~p~v~fL~~lGl  262 (491)
                      ++.++|.+|..+ ++++.++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            455666666666 4566666666666665

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=96.02  E-value=0.003  Score=66.39  Aligned_cols=8  Identities=13%  Similarity=0.185  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 011206          397 KPKYTYLI  404 (491)
Q Consensus       397 ~pk~~fL~  404 (491)
                      +.|=.|+.
T Consensus       401 rRKEKf~r  408 (458)
T PF10446_consen  401 RRKEKFWR  408 (458)
T ss_pred             hhhHHHHH
Confidence            33333333

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.028  Score=58.42  Aligned_cols=13  Identities=15%  Similarity=0.038  Sum_probs=7.2

Q ss_pred             CCCCCCCCCCCCC
Q 011206          100 SSRRSPVKGCGVG  112 (491)
Q Consensus       100 ~~~~~~~~~~~~~  112 (491)
                      |++.+=++|++|.
T Consensus       318 p~~~~I~T~~~tt  330 (514)
T KOG3130|consen  318 PKRVRINTGKNTT  330 (514)
T ss_pred             cccceeeccchhH
Confidence            5555555665554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.35  E-value=0.021  Score=64.52  Aligned_cols=10  Identities=20%  Similarity=0.202  Sum_probs=4.8

Q ss_pred             cccCCCCceE
Q 011206           24 QTRPNTPRFV   33 (491)
Q Consensus        24 ~~~~~~~~~~   33 (491)
                      -|.|-.|+..
T Consensus      1354 aTi~v~R~~~ 1363 (1516)
T KOG1832|consen 1354 ATIPVDRCLL 1363 (1516)
T ss_pred             eeeecccchh
Confidence            3455555443

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.30  E-value=0.092  Score=54.67  Aligned_cols=13  Identities=23%  Similarity=0.220  Sum_probs=5.5

Q ss_pred             cccccccccCCCC
Q 011206           90 AEIEEYDVNGSSR  102 (491)
Q Consensus        90 ~~~~~~~~~~~~~  102 (491)
                      .+-+++-+.++.-
T Consensus       295 ~d~e~~~v~dN~~  307 (514)
T KOG3130|consen  295 NDHEALGVGDNSI  307 (514)
T ss_pred             cchhhhccCCCcC
Confidence            3344444444433

>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins

Probab=92.25  E-value=0.14  Score=47.16  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=23.6

Q ss_pred             cCCCCceEEEeeccccccccCCccccCCCCCCCCCCCCcccC
Q 011206           26 RPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEG   67 (491)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (491)
                      .|.-..-||.+.-+.-.||.  |++-.....|.||.++++.|
T Consensus        24 ~~~~~~~~vey~G~~r~vL~--r~~~~~~n~~~~d~~~~~~d   63 (149)
T PF08595_consen   24 GPSLYEKVVEYNGSERSVLQ--RKRIRFRNPPRIDEEGDEID   63 (149)
T ss_pred             CccccceeeEECCeeeeEee--cchhhcccccccCccccccc
Confidence            45555567887777777887  33333345666766655443

In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=91.84  E-value=0.093  Score=60.62  Aligned_cols=7  Identities=14%  Similarity=0.102  Sum_probs=3.0

Q ss_pred             ccchhhh
Q 011206          157 MTRNATE  163 (491)
Q Consensus       157 ~~~~~~~  163 (491)
                      |...+..
T Consensus       729 mdDe~m~  735 (784)
T PF04931_consen  729 MDDEQMM  735 (784)
T ss_pred             cCHHHHH
Confidence            4444444

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known

Probab=90.35  E-value=0.14  Score=55.32  Aligned_cols=17  Identities=24%  Similarity=0.509  Sum_probs=12.2

Q ss_pred             CCCCCCCCcccCCccccc
Q 011206           74 DDEGKEDDWLADDDDFAE   91 (491)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~   91 (491)
                      ||||||+|||+.. +++|
T Consensus       307 dDDDDssDWEDSv-eESG  323 (507)
T PF11702_consen  307 DDDDDSSDWEDSV-EESG  323 (507)
T ss_pred             cCCccchhhhhcc-cccc
Confidence            5677789996666 6665

>PTZ00415 transmission-blocking target antigen s230; Provisional

Probab=88.81  E-value=0.24  Score=59.61  Aligned_cols=16  Identities=19%  Similarity=0.604  Sum_probs=13.0

Q ss_pred             hHHHhhcCcccccCcc
Q 011206          411 VQSLTKYPMYLSLSLD  426 (491)
Q Consensus       411 ~~~I~k~P~lLs~SLe  426 (491)
                      ...+-.||.+|.+.+.
T Consensus       684 ~ky~~~yp~~~ifp~n  699 (2849)
T PTZ00415        684 AKYLNGYPSFFIFPFN  699 (2849)
T ss_pred             hhhccCCCceEEeehh
Confidence            4678888999998885

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.72  E-value=0.21  Score=57.45  Aligned_cols=6  Identities=50%  Similarity=0.761  Sum_probs=2.2

Q ss_pred             CCcccC
Q 011206           80 DDWLAD   85 (491)
Q Consensus        80 ~~~~~~   85 (491)
                      |||++|
T Consensus       936 dd~d~~  941 (1010)
T KOG1991|consen  936 DDFDED  941 (1010)
T ss_pred             ccccch
Confidence            333333

>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []

Probab=88.27  E-value=0.95  Score=37.00  Aligned_cols=9  Identities=22%  Similarity=0.383  Sum_probs=3.9

Q ss_pred             cccccCCcc
Q 011206           41 AKILKTNRK   49 (491)
Q Consensus        41 ~~~~~~~~~   49 (491)
                      .+++.|.+-
T Consensus        23 s~~v~~r~P   31 (77)
T PF12253_consen   23 SKIVTPRNP   31 (77)
T ss_pred             ccccccCCc
Confidence            444444443

The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=87.82  E-value=0.26  Score=56.52  Aligned_cols=14  Identities=29%  Similarity=0.399  Sum_probs=7.7

Q ss_pred             CCCCCCCCCcccCC
Q 011206           55 TLSLYDDDSEEEGE   68 (491)
Q Consensus        55 ~~~~~~~~~~~~~~   68 (491)
                      -+|-|-.|+|||||
T Consensus       309 YDPNy~yd~~eDed  322 (1233)
T KOG1824|consen  309 YDPNYNYDTEEDED  322 (1233)
T ss_pred             cCCCCCCCCccchh
Confidence            45666666654444

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=86.68  E-value=3.4  Score=43.07  Aligned_cols=198  Identities=17%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             HCCCChhhHHHHHhhCCcccccccc-------cchHHHHHHHH--HcCC---Cchhhhhhhhhcccccccccccch-hHH
Q 011206          223 SVGVKQRDVRRILLRQPQILEYTVE-------NNLESHVAFLI--SLGI---PNSKIGQIIAATPSLFSYSVENSL-KPT  289 (491)
Q Consensus       223 slGls~~~l~kli~~~P~iL~~s~e-------~~L~p~v~fL~--~lGl---s~~~I~kll~~~P~lL~~s~e~~l-~p~  289 (491)
                      .+|+....+...+.+||.|+.....       -.+.+...-|-  +..+   ...+++.-|.   .+|.++.++.| -.+
T Consensus        46 ~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~---KLLMMS~~~rlpL~k  122 (335)
T PF11955_consen   46 QLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLR---KLLMMSKDRRLPLSK  122 (335)
T ss_pred             hcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHH---HHhccCCCCcccHHH
Confidence            4777667777777788877754320       01222222221  1111   1122222222   24454544322 235


Q ss_pred             HHHHHHHhCCChhhHHHHHhhCccceeccc-c--hhhhhhHHHHHhhcCCChhhHHHhh-----------------hccc
Q 011206          290 VRYLVEEVGINEKSLGKVVQLSPQVLVQRI-D--ISWNTRCIFLSKELGAPRDDVVKMV-----------------TKHP  349 (491)
Q Consensus       290 v~~L~~~lGvs~~~l~kll~~~P~lL~~~~-e--~~l~~kl~~L~~~LG~s~~ev~~ml-----------------~~~P  349 (491)
                      |..++.++|++.+....++.++|..|.... .  ...-+-+.|= .++.++.-+...+.                 ..+|
T Consensus       123 i~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd-~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp  201 (335)
T PF11955_consen  123 IAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWD-PELAVSALEKRAEKEYREKREDGFDRPLAFPVSFP  201 (335)
T ss_pred             HHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecC-CccCcCccchhhhhccccccccccCCceeeeecCC
Confidence            666666788888888888888888775422 0  0000000110 12222221111110                 1112


Q ss_pred             cccccccccchHHHHHHHHHhcCC--hHH-----------HHHHHHhccchhccCcccc-HHHHHHHHHHHhCCch---H
Q 011206          350 QLLHYSIDDGLLPRINFLRSIGMR--NSD-----------ILKVLRSLTQVLSLSLEDN-LKPKYTYLINELHNEV---Q  412 (491)
Q Consensus       350 ~lL~~sie~~L~~kvefL~~lG~s--~ee-----------i~~ml~r~P~iL~~Sle~~-L~pk~~fL~~~mg~~~---~  412 (491)
                      .=+  .+....+.+++-++++-+.  .++           =.++|.-.=.+|++.+|++ ...++..+.+.+|++.   .
T Consensus       202 ~G~--~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~  279 (335)
T PF11955_consen  202 KGF--RLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRR  279 (335)
T ss_pred             CCc--cccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHH
Confidence            111  1123455555555544321  111           1122333334677776654 5677888888899885   6


Q ss_pred             HHhhcCcccccCcc
Q 011206          413 SLTKYPMYLSLSLD  426 (491)
Q Consensus       413 ~I~k~P~lLs~SLe  426 (491)
                      .+.++|.+|..|.-
T Consensus       280 ~l~rHPgIFYvS~k  293 (335)
T PF11955_consen  280 LLLRHPGIFYVSLK  293 (335)
T ss_pred             HHHhCCCeEEEecc
Confidence            78999999999873

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]

Probab=85.34  E-value=0.43  Score=47.16  Aligned_cols=10  Identities=20%  Similarity=0.282  Sum_probs=4.1

Q ss_pred             CCCCCCCCCC
Q 011206           99 GSSRRSPVKG  108 (491)
Q Consensus        99 ~~~~~~~~~~  108 (491)
                      +++..++|+|
T Consensus       262 ~K~~~k~kk~  271 (303)
T KOG3064|consen  262 NKKESKKKKG  271 (303)
T ss_pred             hhhhhhhccc
Confidence            3444444444

>KOG3241 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.84  E-value=0.73  Score=43.18  Aligned_cols=19  Identities=26%  Similarity=0.246  Sum_probs=9.5

Q ss_pred             CCCCCCCCCCcccCCccccc
Q 011206           72 DDDDEGKEDDWLADDDDFAE   91 (491)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~   91 (491)
                      |.||||...|.+-|+ |+|+
T Consensus       200 d~D~eD~~gD~e~~~-edsd  218 (227)
T KOG3241|consen  200 DSDEEDNVGDDEHDL-EDSD  218 (227)
T ss_pred             ccccccccCcccccc-cccc
Confidence            444455555555555 4454

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46

Probab=83.03  E-value=0.83  Score=51.50  Aligned_cols=11  Identities=27%  Similarity=0.516  Sum_probs=5.3

Q ss_pred             HhcCCCCHHHH
Q 011206          186 LSTFGLKESHF  196 (491)
Q Consensus       186 L~slG~s~~~I  196 (491)
                      +.-+|++...+
T Consensus       240 ~AIvGlT~q~i  250 (622)
T PF02724_consen  240 LAIVGLTDQYI  250 (622)
T ss_pred             HHHHhhhHHhh
Confidence            34455554444

Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []

Probab=80.98  E-value=0.97  Score=52.73  Aligned_cols=11  Identities=27%  Similarity=0.347  Sum_probs=4.5

Q ss_pred             CChHhHHHHHh
Q 011206          177 EKWLPLLDYLS  187 (491)
Q Consensus       177 ~~~~~vl~fL~  187 (491)
                      +......+.|.
T Consensus       426 ~s~eel~~lL~  436 (840)
T PF04147_consen  426 SSHEELLELLD  436 (840)
T ss_pred             CCHHHHHHHHh
Confidence            33334444444

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.09  E-value=0.9  Score=50.64  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             hcCcccccCcccchHHHHHHHHHhh
Q 011206          416 KYPMYLSLSLDQRIRPRHRFLVSLK  440 (491)
Q Consensus       416 k~P~lLs~SLekrI~PR~~fL~~L~  440 (491)
                      -+|..++-.++.-++|-|.-|+.++
T Consensus       776 ~~Pe~vAp~l~~f~~pWc~sl~~i~  800 (885)
T KOG2023|consen  776 ICPEEVAPHLDSFMRPWCTSLRNID  800 (885)
T ss_pred             cCHHhcchhHHHHHHHHHHHhcccc
Confidence            4677777788888999999988885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	491
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		2e-08
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		3e-08

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 216 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 275
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66
Query: 276 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 332
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 67  AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 120
Query: 333 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 392
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 121 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 179
Query: 393 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 445
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 180 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAK 234
Query: 446 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 478
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 235 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 270

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 216 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 275
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 35  ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 94
Query: 276 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 332
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 95  AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 148
Query: 333 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 392
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 149 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 207
Query: 393 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 445
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 208 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAK 262
Query: 446 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 478
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 263 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	491
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-65
3mva_O	343	Transcription termination factor, mitochondrial; a	8e-49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  211 bits (539), Expect = 2e-65
 Identities = 59/269 (21%), Positives = 124/269 (46%), Gaps = 11/269 (4%)

Query: 216 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 275
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 276 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 335
           ++FS  +EN LK  V YL      ++  + ++V+ +P +L   ++   + R  F  KEL 
Sbjct: 67  AIFSEDLEN-LKTRVAYL-HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELE 123

Query: 336 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDN 395
                   +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + +  
Sbjct: 124 LSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMK 182

Query: 396 LKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-----FPL- 449
           L   + ++ N +      + K+P   +  L  +++ RH FL  L +A   P       L 
Sbjct: 183 LTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241

Query: 450 SLFIPTDECFCQKWAGTTVDKYLAFRQKL 478
            L    DE FC++ A  +V  +  F + L
Sbjct: 242 KLVSIPDEIFCEEIAKASVQDFEKFLKTL 270

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  170 bits (431), Expect = 8e-49
 Identities = 52/298 (17%), Positives = 114/298 (38%), Gaps = 16/298 (5%)

Query: 177 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILL 236
                L  +L + G  +     +  R+  ++     +  +R +    +     ++  IL 
Sbjct: 49  TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILE 108

Query: 237 RQPQILEYTVEN-NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVE 295
           R P+    +  N NLE+++ FL S+G+    + +++   P  FS S++   K  V +L  
Sbjct: 109 RSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQA 167

Query: 296 -----EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-P 349
                        + K++  +P +L+Q           FL        ++++ ++     
Sbjct: 168 AGLSLGHNDPADFVRKIIFKNPFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGA 226

Query: 350 QLLHYSIDD---GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 406
           ++L  S D            L S+G    ++ K + S   V+ L+ E     K   L+ E
Sbjct: 227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEE 285

Query: 407 LHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWA 464
            +  +  + + P  L  S+   ++ R + LV+          ++L   + + +  K  
Sbjct: 286 -NISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLSTL-NITLLSWSKKRYEAKLK 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 47/346 (13%), Positives = 97/346 (28%), Gaps = 117/346 (33%)

Query: 179 WL---------PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQR 229
           WL          +L+ L     +          H  ++++ + S +  L  LL     + 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 230 ------DVR------------RILL--RQPQILEYTVENNLESHVA-------------- 255
                 +V+            +ILL  R  Q+ ++ +     +H++              
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVK 304

Query: 256 --FLISLGIPNSK---------------IGQIIAATPSLFSY---------------SVE 283
              L  L                     I + I    + +                 S+ 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 284 NSLKPT-VRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVV 342
             L+P   R + + + +   S      +   +L     + W      + K        V 
Sbjct: 365 V-LEPAEYRKMFDRLSVFPPS----AHIPTILLS----LIWFD----VIKSD--VMVVVN 409

Query: 343 K-----MVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDIL--KVLRSLTQVLSLSLEDN 395
           K     +V K P+    SI       I     + + N   L   ++       +   +D 
Sbjct: 410 KLHKYSLVEKQPKESTISIPS-----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 396 LKPK-----YTYL-----INELHNEVQSLTKYPMYLSLS-LDQRIR 430
           + P      Y+++       E    +       ++L    L+Q+IR
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 59/349 (16%), Positives = 111/349 (31%), Gaps = 89/349 (25%)

Query: 172 EIELDEKWLPLLDYLSTFGLKESHFIQMYE-RHMPSLQINVCSARERLEYLLSVGVKQRD 230
           + E  E      D LS F   E  F+  ++ + +  +  ++ S  E +++++        
Sbjct: 8   DFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSG 63

Query: 231 VRR---ILLRQP-QILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL----FSYSV 282
             R    LL +  ++++  VE  L  +  FL+S       I +     PS+    +    
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS------PI-KTEQRQPSMMTRMYIEQR 116

Query: 283 E---NSLKPTVRYLV---EEVGINEKSL-----------------GKVVQLSPQVL---- 315
           +   N  +   +Y V   +      ++L                 GK   ++  V     
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK 175

Query: 316 VQRI---DISWNTRCIFLSKELGAPR--DDVVKMVTKHPQLLHYSIDDGLLPRINFLRSI 370
           VQ      I W          L      + V++M+    Q L Y ID     R +   +I
Sbjct: 176 VQCKMDFKIFWLN--------LKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI 223

Query: 371 GMRNSDILKVLRSLTQ----VLSLSLEDNLKPKYTYLINELHNEVQSL--TKYPMYLSLS 424
            +R   I   LR L +       L +  N++       N  +   + L  T++       
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFK-----Q 276

Query: 425 LDQRIRPRHRFLVSLKKAPKGPFP---LSLFIPTDECFCQKWAGTTVDK 470
           +   +       +SL        P    SL +        K+       
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYLDCRPQD 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	491
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.93
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.51
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	91.86
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	84.09
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	82.97
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	82.42

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1e-45  Score=380.10  Aligned_cols=306  Identities=17%  Similarity=0.233  Sum_probs=268.0

Q ss_pred             cccCcccccccchhhhhhhhhhhhhccccCChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCC
Q 011206          148 KDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK  227 (491)
Q Consensus       148 ~~~~~~g~l~~~~~~~~~~p~l~~~~d~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls  227 (491)
                      |+ .+||.  .....++.+|+++ ..+ .++++++++||+++|++.++|++++.++|.+|.++++++.++++||+++|++
T Consensus        25 ~L-~s~Gl--~~~~~~~~~p~l~-~~s-~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s   99 (343)
T 3mva_O           25 NL-LTMGV--DIDMARKRQPGVF-HRM-ITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTS   99 (343)
T ss_dssp             HH-HHHTC--CHHHHHHHCGGGG-GCS-CCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSC
T ss_pred             HH-HHcCC--CHHHHHHhCchhh-ccC-cccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCC
Confidence            55 77887  3445566799987 444 5799999999999999999999999999999999988999999999999999


Q ss_pred             hhhHHHHHhhCCcccccccc-cchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCC------
Q 011206          228 QRDVRRILLRQPQILEYTVE-NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGIN------  300 (491)
Q Consensus       228 ~~~l~kli~~~P~iL~~s~e-~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs------  300 (491)
                      .+++.++|.++|++|..+.+ +++.|+++||+++|++.++|++++.++|++|++++++ ++++++||+ ++|++      
T Consensus       100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~-~lgv~~g~~~p  177 (343)
T 3mva_O          100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQ-AAGLSLGHNDP  177 (343)
T ss_dssp             HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHH-HHHHHTTCSCH
T ss_pred             HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHH-HhCCCcCCCcH
Confidence            99999999999995544444 4899999999999999999999999999999999986 599999996 67764      


Q ss_pred             hhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhcc-ccccccccccchHHHHHHHH----HhcCChH
Q 011206          301 EKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQLLHYSIDDGLLPRINFLR----SIGMRNS  375 (491)
Q Consensus       301 ~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~-P~lL~~sie~~L~~kvefL~----~lG~s~e  375 (491)
                      ...|.++++++|.+|+.+ +.+++++++||.+.+|++++++..++.+. |.++..+ .+.|++++.|+.    ++||+.+
T Consensus       178 ~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~~lG~s~~  255 (343)
T 3mva_O          178 ADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLFSLGCTEE  255 (343)
T ss_dssp             HHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHHHcCCCHH
Confidence            678999999999999999 56899999999767999999999999885 5788888 578999997776    6999999


Q ss_pred             HHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCCCCCCCccccccC
Q 011206          376 DILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPT  455 (491)
Q Consensus       376 ei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~k~~~~L~~l~~s  455 (491)
                      ++..||.++|+||++|. ++|++|++||++ ||++.++|+++|++|+||+| ||+|||++|+..|.... ...+..+.+|
T Consensus       256 ev~~~v~~~P~il~~s~-~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~-~~~~~~l~~s  331 (343)
T 3mva_O          256 EVQKFVLSYPDVIFLAE-KKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLS-TLNITLLSWS  331 (343)
T ss_dssp             HHHHHHHTCGGGGGSCH-HHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSS-SSCGGGGGSC
T ss_pred             HHHHHHHhCCchhcccH-HHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCC-CCcchhhcCC
Confidence            99999999999999995 679999999999 99999999999999999999 99999999887663111 1123345799


Q ss_pred             HHHHHHHhcCC
Q 011206          456 DECFCQKWAGT  466 (491)
Q Consensus       456 dk~F~~~~~~~  466 (491)
                      |++|+++|.+.
T Consensus       332 ~~~F~~~~~~~  342 (343)
T 3mva_O          332 KKRYEAKLKKL  342 (343)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcc
Confidence            99999999764

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=8.9e-46  Score=368.08  Aligned_cols=258  Identities=22%  Similarity=0.416  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHH
Q 011206          214 ARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYL  293 (491)
Q Consensus       214 l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L  293 (491)
                      -.++++||.++|++..+|.+....+|.+|..++++++.|+++||.++|++.++|+++|.++|.+|++++++ ++|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            34788888888888888877666667778888888899999999889999889999999999999888887 88999988


Q ss_pred             HHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHH-HHhcC
Q 011206          294 VEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGM  372 (491)
Q Consensus       294 ~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL-~~lG~  372 (491)
                      + ++|++..++.+++.++|++|+.+++ +++++++||++++|++.+++.+++.++|.+++.+. +.++++++++ .++||
T Consensus        84 ~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~  160 (270)
T 3m66_A           84 H-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGF  160 (270)
T ss_dssp             H-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCC
T ss_pred             H-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCC
Confidence            6 7899888898998889999988888 48888988866899999999999999999999985 6799999987 58999


Q ss_pred             ChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCC--CCC---C
Q 011206          373 RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP--KGP---F  447 (491)
Q Consensus       373 s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~--k~~---~  447 (491)
                      +.++|..||.++|++|++| +++|++|++||+++||++.++|+++|.+|+||+| ||+|||+|+++|+..+  +..   +
T Consensus       161 s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~  238 (270)
T 3m66_A          161 KHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI  238 (270)
T ss_dssp             CHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCC
T ss_pred             CHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCC
Confidence            9999999999999999999 5899999999999999999999999999999999 9999999999998532  222   4


Q ss_pred             Ccccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 011206          448 PLSLF-IPTDECFCQKWAGTTVDKYLAFRQK  477 (491)
Q Consensus       448 ~L~~l-~~sdk~F~~~~~~~s~e~y~~F~~~  477 (491)
                      +|+++ .+||++|+++|+++++|+|++|++.
T Consensus       239 ~L~~~l~~sd~~F~~~~~~~~~eey~~f~k~  269 (270)
T 3m66_A          239 SLDKLVSIPDEIFCEEIAKASVQDFEKFLKT  269 (270)
T ss_dssp             CHHHHHHSCHHHHHHHTTCSCHHHHHHHHTT
T ss_pred             CHHHHhcCCHHHHHHHHhcCCHHHHHHHHhc
Confidence            55554 6999999999999999999999974

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=312.20  Aligned_cols=225  Identities=21%  Similarity=0.331  Sum_probs=190.1

Q ss_pred             chHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHH
Q 011206          249 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCI  328 (491)
Q Consensus       249 ~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~  328 (491)
                      ++...+.+|.++|++..+|+++|..+|.++..+    +.++|.||. .+|++.+.|.++|.++|++|+.+++ ++++++.
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~----l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~  118 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQ----LLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHH----HHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchhH----HHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence            466677778888888888888888888876543    567788885 7888888888888888888888876 5888888


Q ss_pred             HHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206          329 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL  407 (491)
Q Consensus       329 ~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m  407 (491)
                      || +++|++.+++.+++.++|++|+++. +.+..++.+|. ++||+.++|..||.++|+||++| +++|++|++||+++|
T Consensus       119 fL-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~M  195 (335)
T 4fp9_B          119 YL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRM  195 (335)
T ss_dssp             HH-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTT
T ss_pred             HH-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHh
Confidence            88 4789998899999999999999985 57888899886 79999999999999999999999 689999999999999


Q ss_pred             CCchHHHhhcCcccccCcccchHHHHHHHHHhhcCCCC----C-----CCcccc-ccCHHHHHHHhcCCChHHHHHHHHH
Q 011206          408 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG----P-----FPLSLF-IPTDECFCQKWAGTTVDKYLAFRQK  477 (491)
Q Consensus       408 g~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~k~----~-----~~L~~l-~~sdk~F~~~~~~~s~e~y~~F~~~  477 (491)
                      |+++.+|++ |.+|+||++ ||+|||.||+.||.++..    .     .+|..| ..||+.||.++|++|+++|+.|++ 
T Consensus       196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k-  272 (335)
T 4fp9_B          196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKK-  272 (335)
T ss_dssp             CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHH-
T ss_pred             CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHH-
Confidence            999999997 999999998 999999999999975332    1     245555 589999999999999999999986 


Q ss_pred             HhhHHHHH
Q 011206          478 LLLKDFAK  485 (491)
Q Consensus       478 l~~~~~~~  485 (491)
                      ++.++..+
T Consensus       273 ~~~~e~~~  280 (335)
T 4fp9_B          273 LLAREEEE  280 (335)
T ss_dssp             HHHHHHHC
T ss_pred             HHHhhhhc
Confidence            66666544

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.6e-34  Score=292.70  Aligned_cols=253  Identities=21%  Similarity=0.333  Sum_probs=226.0

Q ss_pred             CChHhHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHH
Q 011206          177 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF  256 (491)
Q Consensus       177 ~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~f  256 (491)
                      .+...+++||.++|++.+++   ++++|.++..+++++.++++||+++|++.++|++++.++|.+|.+++ +++.|+++|
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f   92 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL   92 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence            45678999999999997765   56789888888899999999999999999999999999999999997 689999999


Q ss_pred             HHHcCCCchhhhhhhhhcccc-cccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcC
Q 011206          257 LISLGIPNSKIGQIIAATPSL-FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG  335 (491)
Q Consensus       257 L~~lGls~~~I~kll~~~P~l-L~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG  335 (491)
                      |+++|+++++|+++|.++|++ ++.+.++++.|++.||+ ++|++.+++.+++.++|++|+.+++.. ++++.+|. ++|
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~-~lg  169 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQ-AAG  169 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHH-HHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHH-HhC
Confidence            999999999999999999994 55554447999999997 899999999999999999999999864 88999994 666


Q ss_pred             CC------hhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhcc-chhccCccccHHHHHHHHHH--
Q 011206          336 AP------RDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLT-QVLSLSLEDNLKPKYTYLIN--  405 (491)
Q Consensus       336 ~s------~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P-~iL~~Sle~~L~pk~~fL~~--  405 (491)
                      ++      .+.+.+|+.++|.+|+.+ +++++++++||+ .+|++.+++..+|.+.| .+++++ .+.+++++.|+.+  
T Consensus       170 v~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~  247 (343)
T 3mva_O          170 LSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKL  247 (343)
T ss_dssp             HHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHH
T ss_pred             CCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHH
Confidence            53      678999999999999999 899999999999 59999999999999865 799999 5789999999998  


Q ss_pred             -HhCCchH----HHhhcCcccccCcccchHHHHHHHHHh
Q 011206          406 -ELHNEVQ----SLTKYPMYLSLSLDQRIRPRHRFLVSL  439 (491)
Q Consensus       406 -~mg~~~~----~I~k~P~lLs~SLekrI~PR~~fL~~L  439 (491)
                       .+|++.+    .+.++|.+|++|.++ |+++++||..+
T Consensus       248 ~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~m  285 (343)
T 3mva_O          248 FSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLMEE  285 (343)
T ss_dssp             HTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHTT
T ss_pred             HHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHHc
Confidence             6899865    569999999999985 99999999983

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=3.6e-34  Score=284.46  Aligned_cols=217  Identities=21%  Similarity=0.347  Sum_probs=203.8

Q ss_pred             hHHHHHhcCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHH
Q 011206          181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS  259 (491)
Q Consensus       181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~  259 (491)
                      ++++||.++|++.++|.+....+|.+|.++++ ++.++++||.++|++.++|++++.++|.+|.+++++ ++|+++||++
T Consensus         7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~   85 (270)
T 3m66_A            7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHS   85 (270)
T ss_dssp             HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHH
Confidence            78999999999999998877777777999986 799999999999999999999999999999999976 9999999999


Q ss_pred             cCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChh
Q 011206          260 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD  339 (491)
Q Consensus       260 lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~  339 (491)
                      +|++.++|++++.++|++|++++++ ++++++||++++|++.+++.+++.++|.+++.+++ .++++++++.+++|++.+
T Consensus        86 ~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~  163 (270)
T 3m66_A           86 KNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHN  163 (270)
T ss_dssp             TTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHH
T ss_pred             cCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999999995 99999999768999999999999999999999988 588999987679999999


Q ss_pred             hHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206          340 DVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE  406 (491)
Q Consensus       340 ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~  406 (491)
                      ++..|+.++|++|+++. ++++++++||. +||++.++|    .++|++|++|++ +|+||+.||..-
T Consensus       164 ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L  225 (270)
T 3m66_A          164 EIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL  225 (270)
T ss_dssp             HHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence            99999999999999995 89999999996 799999875    699999999997 999999999874

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=228.54  Aligned_cols=182  Identities=19%  Similarity=0.346  Sum_probs=154.4

Q ss_pred             CHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHH
Q 011206          213 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY  292 (491)
Q Consensus       213 ~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~  292 (491)
                      .++..+.+|.++||++.+|++++..+|.++.    .++.+++.||..+|++.++|.++|.++|.+|++++++ |++++.|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHH
Confidence            4667778888888888888888888888863    3466778888888888888888888888888888864 8888888


Q ss_pred             HHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-Hhc
Q 011206          293 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIG  371 (491)
Q Consensus       293 L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG  371 (491)
                      |+ .+|++...+.+++.++|++|+.+.+ .+..++.+|..++||+.+++..||.++|+||+++ .+.|++|++||. +||
T Consensus       120 L~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mg  196 (335)
T 4fp9_B          120 LQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMG  196 (335)
T ss_dssp             HH-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTC
T ss_pred             HH-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhC
Confidence            86 6888888888888888888888877 4777788887799999999999999999999999 578999999998 799


Q ss_pred             CChHHHHHHHHhccchhccCccccHHHHHHHHHHHhCC
Q 011206          372 MRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN  409 (491)
Q Consensus       372 ~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~  409 (491)
                      ++.++|.    + |++|++|++ +|+||+.||.. +|.
T Consensus       197 l~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          197 IKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             CCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             CCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            9999974    3 999999995 99999999987 443

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.51  E-value=8.9e-13  Score=117.27  Aligned_cols=183  Identities=25%  Similarity=0.407  Sum_probs=136.0

Q ss_pred             HhCCChhhHHHHHhhCccceecccchhhhhhHHHHHhhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCCh
Q 011206          296 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRN  374 (491)
Q Consensus       296 ~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~  374 (491)
                      -+|+.++-++-++...|++|...+- .++.+-.+| ..+|+.+..+.+++--+|.+++.. ...+...+..|+ +.=|+.
T Consensus        42 llglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftv  118 (239)
T 4fzv_B           42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTV  118 (239)
T ss_dssp             HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCH
T ss_pred             hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhH
Confidence            4666666666666666766665553 345555566 366777766666666667776665 455666677776 466777


Q ss_pred             HHHHHHHHhccchhccCccccHHHHHHHHHHHhCCchHHHhhcCcccccCcccchHHHHHHHHHhhcCC----CC----C
Q 011206          375 SDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP----KG----P  446 (491)
Q Consensus       375 eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~mg~~~~~I~k~P~lLs~SLekrI~PR~~fL~~L~~~~----k~----~  446 (491)
                      +++-+++..||.+|.-++ ..+.-|+.|-.-.||+..-+|++ ..+|.||+. .|+.||-+|..|++.+    +|    |
T Consensus       119 qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqip  195 (239)
T 4fzv_B          119 QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP  195 (239)
T ss_dssp             HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSC
T ss_pred             HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCC
Confidence            788888888888888876 67999999988899999888888 678999997 7999999999998743    22    2


Q ss_pred             CCc-cc-cccCHHHHHHHhcCCChHHHHHHHHHHhhHHHHH
Q 011206          447 FPL-SL-FIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAK  485 (491)
Q Consensus       447 ~~L-~~-l~~sdk~F~~~~~~~s~e~y~~F~~~l~~~~~~~  485 (491)
                      -++ .. +..|+.+|+++-+.+++|+|+.|++ +++.+..|
T Consensus       196 npllkdilrvseaeflartactsveefqvfkk-llareeee  235 (239)
T 4fzv_B          196 NPLLKDILRVSEAEFLARTACTSVEEFQVFKK-LLAREEEE  235 (239)
T ss_dssp             CCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHH-HHHHHHHH
T ss_pred             ChHHHHHHHHhHHHHHHHHhcccHHHHHHHHH-HHhhhhhh
Confidence            233 44 4699999999999999999999996 66665544

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.55  E-value=4.9e-07  Score=80.52  Aligned_cols=145  Identities=21%  Similarity=0.398  Sum_probs=118.1

Q ss_pred             HHHHHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHH
Q 011206          252 SHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS  331 (491)
Q Consensus       252 p~v~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~  331 (491)
                      ..+.-+.-+|++++-+.-++.+.|.++...+. .++.+-.||+ .+|+.+..+.+++-.||.+++++.. .+...+..|.
T Consensus        35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvrllk  111 (239)
T 4fzv_B           35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLK  111 (239)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHH
Confidence            34445556788888888888888888888776 3778888885 7888888888888888888888765 4777788887


Q ss_pred             hhcCCChhhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHH
Q 011206          332 KELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE  406 (491)
Q Consensus       332 ~~LG~s~~ev~~ml~~~P~lL~~sie~~L~~kvefL~-~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~  406 (491)
                      +.+-|+..++.+++..+|.+|.... ..++-|+.|-- +||+...+|.+     ...|.+|+ .+|+.++-||..-
T Consensus       112 ekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiylerl  180 (239)
T 4fzv_B          112 EKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLERL  180 (239)
T ss_dssp             HHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHHH
T ss_pred             HhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHHh
Confidence            7888999999999999999999885 57888988875 89999988732     46889997 7899999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=91.86  E-value=0.034  Score=56.07  Aligned_cols=9  Identities=22%  Similarity=0.453  Sum_probs=4.3

Q ss_pred             eEEEeeccc
Q 011206           32 FVVLSTHSN   40 (491)
Q Consensus        32 ~~~~~~~~~   40 (491)
                      ...+.+..|
T Consensus       305 L~~L~l~~N  313 (386)
T 2ca6_A          305 LLFLELNGN  313 (386)
T ss_dssp             CCEEECTTS
T ss_pred             ceEEEccCC
Confidence            344555544

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=84.09  E-value=9.9  Score=32.34  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             hHHHHHhcCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH------HCCCChhhHHHHHhhCCcccccccccchHHHH
Q 011206          181 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL------SVGVKQRDVRRILLRQPQILEYTVENNLESHV  254 (491)
Q Consensus       181 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~------slGls~~~l~kli~~~P~iL~~s~e~~L~p~v  254 (491)
                      ..++-|.++||+...+.+.+...       ..+++..++||.      ..|++..++...+..+..--...  ..-...+
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~-------g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~v   80 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAA-------GANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQLM   80 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHH-------CcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHHH
Confidence            56888999999999999887653       126777777775      35778888877776432110000  1122356


Q ss_pred             HHHHHcCCCchhhhhhhhhcccccccccccchhHHHHHHHHHhC
Q 011206          255 AFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG  298 (491)
Q Consensus       255 ~fL~~lGls~~~I~kll~~~P~lL~~s~e~~l~p~v~~L~~~lG  298 (491)
                      .-|.++||+.+.+.+.|..+-        +++...++||....|
T Consensus        81 ~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~~~~  116 (118)
T 4ae4_A           81 SKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHhcc
Confidence            777888999988888886642        246677888864433

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=82.97  E-value=10  Score=32.32  Aligned_cols=102  Identities=15%  Similarity=0.113  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHhCCChhhHHHHHhhCccceecccchhhhhhHHHHH-----hhcCCChhhHHHhhhccccccccccccchH
Q 011206          287 KPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS-----KELGAPRDDVVKMVTKHPQLLHYSIDDGLL  361 (491)
Q Consensus       287 ~p~v~~L~~~lGvs~~~l~kll~~~P~lL~~~~e~~l~~kl~~L~-----~~LG~s~~ev~~ml~~~P~lL~~sie~~L~  361 (491)
                      +..|..|. ++||+...+.+.+..+-    .    ..+..++||.     ...|++...+-..+..+..--..  ...-.
T Consensus         9 ~~~v~~l~-~MGFp~~~~~kAl~~~g----~----~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~   77 (118)
T 4ae4_A            9 RQCVETVV-NMGYSYECVLRAMKAAG----A----NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFL   77 (118)
T ss_dssp             HHHHHHHH-HTTCCHHHHHHHHHHHC----S----CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHHC----c----CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCH
Confidence            34677775 78888888888776532    1    2344455554     24567766555444332110000  01133


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccchhccCccccHHHHHHHHHHHh
Q 011206          362 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL  407 (491)
Q Consensus       362 ~kvefL~~lG~s~eei~~ml~r~P~iL~~Sle~~L~pk~~fL~~~m  407 (491)
                      +.+.-|.+|||+.+.+.++++.+        .+.+..-+++|....
T Consensus        78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~  115 (118)
T 4ae4_A           78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARA  115 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhc
Confidence            56888889999999999988876        567777788777643

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=82.42  E-value=1.5  Score=44.70  Aligned_cols=46  Identities=26%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             CccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccccccchHHHHHHHHHcCCCc
Q 011206          210 NVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN  264 (491)
Q Consensus       210 ~~~~l~~~l~fL~slGls~~~l~kli~~~P~iL~~s~e~~L~p~v~fL~~lGls~  264 (491)
                      ........++.|..+||+..++.+.+..       .. +|+...++||-+ |++.
T Consensus       164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a-------~~-nn~~~A~e~L~~-gip~  209 (368)
T 1oqy_A          164 TGSEYETMLTEIMSMGYERERVVAALRA-------SY-NNPHRAVEYLLT-GIPG  209 (368)
T ss_dssp             CTTTHHHHHHHHHTTTCCSHHHHHHHHH-------SC-SSTTHHHHTTTT-SSTT
T ss_pred             CCcchHHHHHHHHHcCCCHHHHHHHHHH-------cC-CCHHHHHHHHHh-CCCc
Confidence            3457889999999999999999988764       22 578888999953 5654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00