Citrus Sinensis ID: 011231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Protein Sequence
MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPEDQLQQQQQQQQTVGQNSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFNNLQFDWKPSP
Secondary Structure (PSIPRED)
cccccccccccEEEEcccEEEEEEEccEEEEEEcEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEHHHHHHHcHHHHHHHHHHccccHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEHHHHHHHHHHHHHHEEEEcccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccHHHcHHHHHHHHHHHccccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccEEccccccccccccccccccccHHHHccHHHHHcccHHHcccccccccHcHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mpreyqnasGQIVLDYAKAIQESVFEQLRVvrdgqlrivfspdlkicswEFCARRHeeliprrllipqVSQLGAAAQKYQAATQnassnlsapelqnnCNMFVASARQLAKALEvplvndlgytkrYVRCLQISEVVNSMKDLIdysrvtgtgpmeslakfprrtsgasgfhspsqqpedQLQQQQQQQQtvgqnsnsESSVQANAMQLATSNgvanvnnslnpasasstaSTIVGLLHqnsmnsrqqntvnnasspyggssvqmpspgssnnipqaqpnpspfqsptpsssnnppqtshsaltaanhmssasspanisvqqpalsgeadpralsgdadpsdsqSAVQKILHEMMLCshlnggsgggggmvgvgslgndvknvndimatgnntvlnggnglvgngtvnnnpgigtggygnmggglgqSAMVNGIRAAmgnnsmmngRVGMTAMARDQSMNHQQDLGNQLLNglgavngfnnlqfdwkpsp
Flexible Loop (DISEMBL)
mpreyqnasgQIVLDYAKAIQESVFEQLrvvrdgqlrivfspdlkicSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPEDQLQQQQQQQQTVGQNSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFnnlqfdwkpsp
Low Complexity Region (SEG)
MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSqqpedqlqqqqqqqqtvgqNSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAqpnpspfqsptpsssnnppqtshsALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHlnggsgggggmvgvgslgnDVKNVNDIMAtgnntvlnggnglvgngtvnnnpgigtggygnmggglgQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMnhqqdlgnqllnglgavngFNNLQFDWKPSP
Disordered region (IsUnstruct)
**********QIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAA*********************NNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVT**************************************************************************************************************************************************************************************************************************************KNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGI*********************************QLLNGLGAVNGFNNLQFDW****
Disordered Region (DISOPRED)
*******ASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLG**********************************************DLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMES**********************************************************************************************************************************************************************************************************************************************************************************************************************QLLNGLGAVNGFNNLQFDW****
Disordered Region (DISEMBL)
*********GQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVS******************NLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFP******************************************NAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASS**************SNNI************************************************************************VQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFNNLQFDWKPSP
Disordered Region (DISPRO)
****YQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTS***********************************************************************************************************************************************************************************AVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFNNLQFDWKPS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPEDQLQQQQQQQQTVGQNSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFNNLQFDWKPSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	490	2.2.26 [Sep-21-2011]
Q8W234	877	Transcriptional corepress	yes	no	0.910	0.508	0.603	1e-108

>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 308/510 (60%), Positives = 350/510 (68%), Gaps = 64/510 (12%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPRE QN+SGQIVL+YAKA QESVFE LRVVRDGQLRIVFSPDLKI SWEFCARRHEELI
Sbjct: 406 MPRESQNSSGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELI 465

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLG+AAQKYQ A QNA+++ + PELQNNCNMFVASARQLAKALEVPLVND
Sbjct: 466 PRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVASARQLAKALEVPLVND 525

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPS-QQPE 179
           LGYTKRYVRCLQISEVVNSMKDLIDYSR T TGP+ESLAKFPRRT  +S    PS QQ  
Sbjct: 526 LGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQAS 585

Query: 180 DQLQ-----------------QQQQQQQTVGQNSNSE-SSVQANAMQLATSNGVANVNNS 221
           DQL+                 QQQQQQQTV QN+NS+ SS Q   MQ   SNG   VN +
Sbjct: 586 DQLRQQQQQQQQQQQQQQQQQQQQQQQQTVSQNTNSDQSSRQVALMQGNPSNG---VNYA 642

Query: 222 LNPASASSTASTIVGLLHQNSMNSRQQNTVNN-ASSPYGGSSVQMPSPGSSNNI----PQ 276
            N ASAS++ S+I GL+HQNSM  R QN   N  +SPYGG+SVQM SP SS  +     Q
Sbjct: 643 FNAASASTSTSSIAGLIHQNSMKGRHQNAAYNPPNSPYGGNSVQMQSPSSSGTMVPSSSQ 702

Query: 277 AQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSG 336
            Q N   FQSPT SS+NN    S + + + NHM S +SPA   +QQ   +GE D      
Sbjct: 703 QQHNLPTFQSPTSSSNNN--NPSQNGIPSVNHMGSTNSPA---MQQ---AGEVD------ 748

Query: 337 DADPSDSQSAVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLN 396
                +  S+VQKIL+E+++ +  +  S  GG MVG GS GND K   ++ ++G      
Sbjct: 749 ----GNESSSVQKILNEILMNNQAHNNS-SGGSMVGHGSFGNDGKGQANVNSSGV----- 798

Query: 397 GGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARD 456
               L+ NG VNNN     GG G  GGG+GQS   NGI    GNNS+MNGRVGM  M RD
Sbjct: 799 ----LLMNGQVNNNNNTNIGGAGGFGGGIGQSMAANGINNINGNNSLMNGRVGM--MVRD 852

Query: 457 QSMNHQQDLGNQLLNGLGAVNGFNNLQFDW 486
              N QQDLGNQL   LGAVNGFNN  FDW
Sbjct: 853 P--NGQQDLGNQL---LGAVNGFNN--FDW 875

DNA-binding adapter subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and LEUNIG to repress AGAMOUS expression.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
224062956	919	predicted protein [Populus trichocarpa]	0.961	0.512	0.8	0.0
356509338	911	PREDICTED: transcriptional corepressor S	0.971	0.522	0.767	0.0
356546794	928	PREDICTED: transcriptional corepressor S	0.973	0.514	0.729	0.0
255558438	905	Transcriptional corepressor SEUSS, putat	0.965	0.522	0.800	0.0
356552765	915	PREDICTED: transcriptional corepressor S	0.969	0.519	0.731	0.0
356515969	953	PREDICTED: transcriptional corepressor S	0.971	0.499	0.765	0.0
225457805	913	PREDICTED: transcriptional corepressor S	0.967	0.519	0.799	0.0
449466018	904	PREDICTED: LOW QUALITY PROTEIN: transcri	0.965	0.523	0.703	1e-165
449516395	911	PREDICTED: LOW QUALITY PROTEIN: transcri	0.965	0.519	0.701	1e-164
49523817	901	SEU3A protein [Antirrhinum majus]	0.953	0.518	0.704	1e-163

>gi|224062956|ref|XP_002300947.1| predicted protein [Populus trichocarpa] gi|222842673|gb|EEE80220.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/490 (80%), Positives = 424/490 (86%), Gaps = 19/490 (3%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREYQN+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 449 MPREYQNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 508

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLGAAAQKYQAATQNASSNLS PELQNNCN+FVASARQLAKALEVPLVND
Sbjct: 509 PRRLLIPQVSQLGAAAQKYQAATQNASSNLSVPELQNNCNLFVASARQLAKALEVPLVND 568

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYSR TGTGPMESL+KFPRRT  + GFHS +     
Sbjct: 569 LGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLSKFPRRTGASIGFHSQA----Q 624

Query: 181 QLQQQQQQQQTVGQNSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQ 240
           Q ++QQQQQQT+  NSNS+ S     MQ+A SNG+A+VNNSLN AS ++ AS IVGL+HQ
Sbjct: 625 QPEEQQQQQQTITANSNSDQSSAQATMQIAASNGMASVNNSLNTASTTTYASAIVGLVHQ 684

Query: 241 NSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTSH 300
           NSMNSRQQN++NNASSPYGG+SVQ+PSPGSS+ IPQAQPNPSPFQSPTPSSSNNPPQ SH
Sbjct: 685 NSMNSRQQNSINNASSPYGGNSVQIPSPGSSSTIPQAQPNPSPFQSPTPSSSNNPPQASH 744

Query: 301 SALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHL 360
           SALTA NH+SS +SPANI +QQP LSGE         AD  DSQS+VQK LHEMML S L
Sbjct: 745 SALTAVNHISSTNSPANIPLQQPTLSGE---------ADHGDSQSSVQKFLHEMMLTSQL 795

Query: 361 NGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGN 420
           N    G GGMVGVGSLGN+VKNVN I+ TGNNTVLNGGNGLVGNG VN++ GI  G    
Sbjct: 796 N----GTGGMVGVGSLGNEVKNVNGILPTGNNTVLNGGNGLVGNGAVNSS-GI-GGAGYG 849

Query: 421 MGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGFN 480
             GGL QS MVNGIRAAMGNNSMMNGR+GM +M RDQSMNHQQDLGNQLL+GLGAVNGF+
Sbjct: 850 TMGGLAQSVMVNGIRAAMGNNSMMNGRMGMPSMVRDQSMNHQQDLGNQLLSGLGAVNGFS 909

Query: 481 NLQFDWKPSP 490
           NLQFDWKPSP
Sbjct: 910 NLQFDWKPSP 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509338|ref|XP_003523407.1| PREDICTED: transcriptional corepressor SEUSS-like [Glycine max]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/491 (76%), Positives = 422/491 (85%), Gaps = 15/491 (3%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREY N+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 435 MPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 494

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLG  AQKYQ+ TQNA+ N+S PELQNNCNMFVASARQLAKALEVPLVND
Sbjct: 495 PRRLLIPQVSQLGTVAQKYQSFTQNATPNVSVPELQNNCNMFVASARQLAKALEVPLVND 554

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYSR TGTGPMESLAKFPRRTSG+SG      Q  +
Sbjct: 555 LGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRTSGSSGPRG-QAQQHE 613

Query: 181 QLQQQQQQQQTVGQNSN-SESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLH 239
           +  QQQQQQQ V  NSN  ++SVQA AMQ+A+SNG+ +VNN++NPAS  ++ STIVGLLH
Sbjct: 614 EQLQQQQQQQMVAHNSNGDQNSVQAAAMQIASSNGMVSVNNTVNPASTLTSTSTIVGLLH 673

Query: 240 QNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTS 299
           QNSMNSRQ N++NNASSPYGGSSVQ+PSPGSS+ +PQAQPN SPFQSPTPSSSNNPPQTS
Sbjct: 674 QNSMNSRQPNSMNNASSPYGGSSVQIPSPGSSSTVPQAQPNSSPFQSPTPSSSNNPPQTS 733

Query: 300 HSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSH 359
           H ALT+ANHMS+ +SPANIS+QQ   S       +SG+ DPSD+QS+VQKI+HEMM+ S 
Sbjct: 734 HPALTSANHMSTTNSPANISMQQQQPS-------ISGEPDPSDAQSSVQKIIHEMMMSSQ 786

Query: 360 LNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYG 419
           +NG      GMVGVGSLGNDVKNVN I+    NT LNGGNGLVGNGT+N+N G+G G YG
Sbjct: 787 INGNG----GMVGVGSLGNDVKNVNGILPVSANTGLNGGNGLVGNGTMNSNSGVGVGNYG 842

Query: 420 NMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGF 479
            M  GLGQSAM NGIR+AM NNS+MNGR GM ++ARDQ+MNHQQD+ NQLL+GLGAV GF
Sbjct: 843 TM--GLGQSAMPNGIRSAMVNNSIMNGRGGMASLARDQAMNHQQDMSNQLLSGLGAVGGF 900

Query: 480 NNLQFDWKPSP 490
           +NLQFDWKPSP
Sbjct: 901 SNLQFDWKPSP 911

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546794|ref|XP_003541807.1| PREDICTED: transcriptional corepressor SEUSS-like [Glycine max]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/503 (72%), Positives = 412/503 (81%), Gaps = 26/503 (5%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREY N+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 439 MPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 498

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLGA AQKYQA TQNA+ NLS PELQNNCNM VASARQLAKALEVPLVND
Sbjct: 499 PRRLLIPQVSQLGAVAQKYQAITQNATPNLSVPELQNNCNMVVASARQLAKALEVPLVND 558

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHS----PSQ 176
           LGYTKRYVRCLQISEVVNSMKDLIDYSR TGTGPM+SLAKFPRRTSG+SG HS       
Sbjct: 559 LGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLAKFPRRTSGSSGLHSQGQQSED 618

Query: 177 QPEDQLQQQQQQQQTVGQNSN-SESSVQANAMQLATSNGVANVNNSLNPASASSTASTIV 235
           Q + Q Q Q   Q  V  +SN  ++SVQ  AMQ+A+SNGV +VNNS+N ASAS++ STIV
Sbjct: 619 QLQQQSQPQLPPQHMVPHSSNGDQNSVQTAAMQIASSNGVTSVNNSVNAASASTSTSTIV 678

Query: 236 GLLHQNSMNSRQ------QNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTP 289
           GLLHQNSMNSRQ      QN++NNASSPYGGSSVQ+ SPGSS N+PQAQPN SPFQSPTP
Sbjct: 679 GLLHQNSMNSRQNSMNSRQNSMNNASSPYGGSSVQIASPGSSGNMPQAQPNASPFQSPTP 738

Query: 290 SSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQK 349
           SSS N PQTSH ALT+ANHM +A+SPANIS+QQ   +      +L  +ADPSD+QS+VQK
Sbjct: 739 SSS-NIPQTSHPALTSANHMGTANSPANISLQQQQQT------SLPAEADPSDAQSSVQK 791

Query: 350 ILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGG--NGLVGNGTV 407
           I+HEMM+ S +N    G GGM G GSLGND+KNVN I+   NNT LN G  +GLVGN  V
Sbjct: 792 IIHEMMMSSQMN----GPGGMAGAGSLGNDMKNVNGILPGSNNTGLNSGSVSGLVGNVAV 847

Query: 408 NNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGN 467
           N+N G+G GGYG +  GLG + M NG+R  MG+NS+MNGR GM ++ARDQ MNHQQDL +
Sbjct: 848 NSNSGVGVGGYGTI--GLGPAGMTNGMRPVMGHNSIMNGRGGMASLARDQVMNHQQDLSS 905

Query: 468 QLLNGLGAVNGFNNLQFDWKPSP 490
           QLL+GLG VNGF+NLQFDWKPSP
Sbjct: 906 QLLSGLGGVNGFSNLQFDWKPSP 928

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558438|ref|XP_002520244.1| Transcriptional corepressor SEUSS, putative [Ricinus communis] gi|223540463|gb|EEF42030.1| Transcriptional corepressor SEUSS, putative [Ricinus communis]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/492 (80%), Positives = 433/492 (88%), Gaps = 19/492 (3%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREYQN+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 431 MPREYQNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 490

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLGAAAQKYQAATQNASSN+S PELQNNCN+FVASARQLAKALEVPLVND
Sbjct: 491 PRRLLIPQVSQLGAAAQKYQAATQNASSNVSVPELQNNCNLFVASARQLAKALEVPLVND 550

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYSR T TGPMESLAKFPRRTS +SG HS S   + 
Sbjct: 551 LGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPMESLAKFPRRTSASSGLHSQS---QQ 607

Query: 181 QLQQQQQQQQTVGQNSNSE-SSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLH 239
             +Q QQQQQT+ QNSNS+ SS+QA  MQ+A SNGV++VNNS+  ASAS++AS IVGLLH
Sbjct: 608 PEEQLQQQQQTMPQNSNSDQSSIQAGGMQIAASNGVSSVNNSITTASASTSASAIVGLLH 667

Query: 240 QNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTS 299
           QNSMNSRQQ+++NNASSPYGG+SVQ+PSPGSS+ IPQAQPNPSPFQSPTPSSSNNP QTS
Sbjct: 668 QNSMNSRQQSSLNNASSPYGGNSVQVPSPGSSSTIPQAQPNPSPFQSPTPSSSNNPTQTS 727

Query: 300 HSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSH 359
           HSALTAANH+SS +SPAN  +QQP         ALS DAD SDSQS+VQKI+HEMM+ + 
Sbjct: 728 HSALTAANHISSTNSPANNPLQQP---------ALSSDADHSDSQSSVQKIIHEMMMSNQ 778

Query: 360 LNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYG 419
           LN    G GGM GVG LGND+KNVN I++T NN V+NGGNGLVGNGTV N+ GIG GG+G
Sbjct: 779 LN----GTGGMAGVGPLGNDMKNVNGILSTSNNGVVNGGNGLVGNGTVTNS-GIGGGGFG 833

Query: 420 NMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNH-QQDLGNQLLNGLGAVNG 478
            MGGGLGQSAM+NGIRA MGNNSM+NGRVGM +M R+ SMNH QQDLGNQLL+GLGAVNG
Sbjct: 834 PMGGGLGQSAMINGIRATMGNNSMLNGRVGMQSMVREPSMNHQQQDLGNQLLSGLGAVNG 893

Query: 479 FNNLQFDWKPSP 490
           FNNL FDWKPSP
Sbjct: 894 FNNLPFDWKPSP 905

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552765|ref|XP_003544733.1| PREDICTED: transcriptional corepressor SEUSS-like [Glycine max]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/495 (73%), Positives = 406/495 (82%), Gaps = 20/495 (4%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREY N+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 436 MPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 495

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLG  AQKYQA TQNA+ NLS PELQNNCN+FVASARQLAKALEVPLVND
Sbjct: 496 PRRLLIPQVSQLGVVAQKYQAFTQNATPNLSVPELQNNCNLFVASARQLAKALEVPLVND 555

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPS-QQPE 179
           LGYTKRYVRCLQISEVVNSMKDLIDYSR T TGPM+SLAKFPRRTSG+SG HS + Q  +
Sbjct: 556 LGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPMDSLAKFPRRTSGSSGLHSQAQQSED 615

Query: 180 DQLQQQQQQQQTVGQNSN-SESSVQANAMQLATSNGVA--NVNNSLNPASASSTASTIVG 236
              QQ Q  Q  V   SN  ++SVQ  AMQ+A+SNGV   N + +   ASAS+T STIVG
Sbjct: 616 QLQQQSQPPQHMVPHTSNGDQNSVQTAAMQIASSNGVTSVNNSVNAASASASNTTSTIVG 675

Query: 237 LLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPP 296
           LLHQNSMNSR QN++NNASSPYGGSSVQ+PSPGSS N+PQAQPN SPFQSPTPSSSNN P
Sbjct: 676 LLHQNSMNSR-QNSMNNASSPYGGSSVQIPSPGSSGNVPQAQPNQSPFQSPTPSSSNN-P 733

Query: 297 QTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMML 356
           QTSH A+T+ANHM +A+SPANI++QQ   S       L  +ADPSD+QS+VQKI+HEMM+
Sbjct: 734 QTSHPAITSANHMGTANSPANITLQQQQTS-------LPAEADPSDAQSSVQKIIHEMMI 786

Query: 357 CSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVN-NNPGIGT 415
            S +N    G GGM G G LGND+KNVN I+   N+T LN G+GL GNG VN +N G+G 
Sbjct: 787 SSQMN----GPGGMAGTGLLGNDMKNVNGILPGSNSTGLNSGSGLAGNGAVNSSNSGVGV 842

Query: 416 GGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGA 475
           GGYG M  GLG S M NG+R  MG+NS+MNGR GM ++ARDQ MNHQQDL +QLL+GLG 
Sbjct: 843 GGYGTM--GLGPSGMTNGMRPVMGHNSIMNGRGGMASLARDQVMNHQQDLSSQLLSGLGG 900

Query: 476 VNGFNNLQFDWKPSP 490
           VNGF+NLQFDWKPSP
Sbjct: 901 VNGFSNLQFDWKPSP 915

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515969|ref|XP_003526669.1| PREDICTED: transcriptional corepressor SEUSS-like [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/491 (76%), Positives = 418/491 (85%), Gaps = 15/491 (3%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREY N+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 477 MPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 536

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLGA AQKYQ+ TQNA+ N+S PELQNNCNMFVASARQL KALEVPLVND
Sbjct: 537 PRRLLIPQVSQLGAVAQKYQSFTQNATPNVSVPELQNNCNMFVASARQLVKALEVPLVND 596

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYSR TGTGPMESLAKFPRRTSG++G      Q  +
Sbjct: 597 LGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRTSGSAGPRG-QAQQHE 655

Query: 181 QLQQQQQQQQTVGQNSN-SESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLH 239
           +  QQQQQQQ V  NSN  ++SV+A AMQ+A+SNG+ +VNNS+NPAS S+T STIVGLLH
Sbjct: 656 EQLQQQQQQQMVAHNSNGDQNSVRAAAMQIASSNGMVSVNNSVNPASTSTTTSTIVGLLH 715

Query: 240 QNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTS 299
           QNSMNSRQQN++NNASSPYGGSSVQ+PSPGSS+ +PQ QPN SPFQSPTPSSSNNPPQTS
Sbjct: 716 QNSMNSRQQNSMNNASSPYGGSSVQIPSPGSSSTVPQGQPNSSPFQSPTPSSSNNPPQTS 775

Query: 300 HSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSH 359
           H ALT+ANH S+ +SPANIS+QQ   S   +P       DPSD+QS+VQKI+HEMM+ S 
Sbjct: 776 HPALTSANHTSTTNSPANISMQQQQSSISGEP-------DPSDAQSSVQKIIHEMMMSSQ 828

Query: 360 LNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYG 419
           +NG      GMVGVGSLGNDVKNV+ I+    NT LNGGNGLVGNG +N+N G+G G YG
Sbjct: 829 INGNG----GMVGVGSLGNDVKNVSGILPVSANTGLNGGNGLVGNGPMNSNSGVGVGNYG 884

Query: 420 NMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVNGF 479
            M  GLGQSAM NGIR AM NNS+MNGR GM ++ARDQ+MNHQQDL NQLL+GLGAV GF
Sbjct: 885 TM--GLGQSAMPNGIRTAMVNNSIMNGRGGMASLARDQAMNHQQDLSNQLLSGLGAVGGF 942

Query: 480 NNLQFDWKPSP 490
           NNLQFDWKPSP
Sbjct: 943 NNLQFDWKPSP 953

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457805|ref|XP_002265920.1| PREDICTED: transcriptional corepressor SEUSS-like [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/493 (79%), Positives = 432/493 (87%), Gaps = 19/493 (3%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREYQN+SGQI+LDYAKAIQESVFEQLRVVR+GQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 437 MPREYQNSSGQIILDYAKAIQESVFEQLRVVREGQLRIVFSPDLKICSWEFCARRHEELI 496

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVSQLGAAAQKYQ+ATQNASSNLS PELQ+NCNMFVASARQLAKALEVPLVND
Sbjct: 497 PRRLLIPQVSQLGAAAQKYQSATQNASSNLSVPELQSNCNMFVASARQLAKALEVPLVND 556

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFH-SPSQQPE 179
           LGYTKRYVRCLQISEVVNSMKDLIDYSR TGTGPMESLAKFPRRT+ +SGFH    Q  E
Sbjct: 557 LGYTKRYVRCLQISEVVNSMKDLIDYSRNTGTGPMESLAKFPRRTNASSGFHNQAQQPEE 616

Query: 180 DQLQQQQQQQQTVGQNSNSE-SSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLL 238
              QQQQQQQQT+ QN+N++ SSVQA AMQLA+SNGV +VNNSLNPASAS+++STIVGLL
Sbjct: 617 QMQQQQQQQQQTIAQNANNDPSSVQATAMQLASSNGVTSVNNSLNPASASTSSSTIVGLL 676

Query: 239 HQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQT 298
           HQNSMNSRQQN++NNA+SPYGG +VQ+PSPGSS++IPQ QPNPSPFQSPTPSSSNNPPQT
Sbjct: 677 HQNSMNSRQQNSMNNANSPYGGGAVQIPSPGSSSSIPQPQPNPSPFQSPTPSSSNNPPQT 736

Query: 299 SHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCS 358
           SH ALTAA HMS+A+SPANIS+QQP+LSGE         ADPSDSQS+VQKI+ EMM+ S
Sbjct: 737 SHGALTAATHMSTANSPANISMQQPSLSGE---------ADPSDSQSSVQKIIQEMMMSS 787

Query: 359 HLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGY 418
            LNG +    GMV VGSLGNDVKNVN I+ T N+T LNGG    G G  N+ PGIG GG 
Sbjct: 788 QLNGTA----GMVSVGSLGNDVKNVNGILPTSNSTGLNGGLVGNGPG--NSTPGIGGGG- 840

Query: 419 GNMGGGLGQSAMVNGIRAAMGNNSM-MNGRVGMTAMARDQSMNHQQDLGNQLLNGLGAVN 477
               GGLGQSAMVNG+RAAMGNNS+ +NGRVGMT M RDQS+NHQQDLGNQLL GLGAVN
Sbjct: 841 FGSMGGLGQSAMVNGMRAAMGNNSLTINGRVGMTPMTRDQSINHQQDLGNQLLGGLGAVN 900

Query: 478 GFNNLQFDWKPSP 490
           GFNNLQFDWK SP
Sbjct: 901 GFNNLQFDWKQSP 913

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466018|ref|XP_004150724.1| PREDICTED: LOW QUALITY PROTEIN: transcriptional corepressor SEUSS-like [Cucumis sativus]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 347/493 (70%), Positives = 404/493 (81%), Gaps = 20/493 (4%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREY NASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI
Sbjct: 429 MPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 488

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVS LGAAAQK+Q+A QN SSNLS PELQNNCNMFVASARQLAKALEVPLVND
Sbjct: 489 PRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVASARQLAKALEVPLVND 548

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYS+ TG GPM+SLAKFPRRTS +SG    +Q P  
Sbjct: 549 LGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVT--NQAPIS 606

Query: 181 QLQQQQQQQQTVGQNS-NSESSVQANAM-QLATSNGVANVNNSLNPASASSTASTIVGLL 238
              +QQQQQ ++ Q S N++SSVQA+A+ QL  SNGV++VNN+ N  S S++ASTI GLL
Sbjct: 607 --DEQQQQQSSIAQRSNNNQSSVQASAVQQLTASNGVSSVNNTANQPSTSNSASTIAGLL 664

Query: 239 HQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQT 298
           HQNSMNSRQQN++ NAS+ YGGSSVQ+PSPGSS+ +P  QPNPS FQ PTPSSSN+  Q 
Sbjct: 665 HQNSMNSRQQNSMPNASNSYGGSSVQIPSPGSSSTVPPTQPNPSTFQPPTPSSSNSLSQP 724

Query: 299 SHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCS 358
           SH+     N MS+A+SPANIS+QQ          ALSGDADPS++QS+VQKIL EMM+ +
Sbjct: 725 SHAVAKNPNQMSAANSPANISMQQQP--------ALSGDADPSETQSSVQKILQEMMMNN 776

Query: 359 HLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGY 418
            +NG +     +VGVGS+ ND+KN+N ++ T ++T LN GN + GNG  N   G+G GGY
Sbjct: 777 QMNGPN----SLVGVGSVVNDMKNMNGVLPT-SSTGLNNGNCIGGNGAANGGSGMGGGGY 831

Query: 419 GNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQ-QDLGNQLLNGLGAVN 477
           G+MG GLGQ  MVNG+R AMGNN++MN R+GM ++A +QSMN Q QD+GNQLL GLGAVN
Sbjct: 832 GSMGSGLGQPVMVNGMRTAMGNNTIMNRRIGMASLALEQSMNGQPQDMGNQLLGGLGAVN 891

Query: 478 GFNNLQFDWKPSP 490
           G++NLQFDWKPSP
Sbjct: 892 GYSNLQFDWKPSP 904

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516395|ref|XP_004165232.1| PREDICTED: LOW QUALITY PROTEIN: transcriptional corepressor SEUSS-like [Cucumis sativus]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 346/493 (70%), Positives = 403/493 (81%), Gaps = 20/493 (4%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREY NASGQIVLDYAKAIQESVFEQLRVVRDGQLRI FSPDLKICSWEFCARRHEELI
Sbjct: 436 MPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIXFSPDLKICSWEFCARRHEELI 495

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQVS LGAAAQK+Q+A QN SSNLS PELQNNCNMFVASARQLAKALEVPLVND
Sbjct: 496 PRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVASARQLAKALEVPLVND 555

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYS+ TG GPM+SLAKFPRRTS +SG    +Q P  
Sbjct: 556 LGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVT--NQAPIS 613

Query: 181 QLQQQQQQQQTVGQNS-NSESSVQANAM-QLATSNGVANVNNSLNPASASSTASTIVGLL 238
              +QQQQQ ++ Q S N++SSVQA+A+ QL  SNGV++VNN+ N  S S++ASTI GLL
Sbjct: 614 --DEQQQQQSSIAQRSNNNQSSVQASAVQQLTASNGVSSVNNTANQPSTSNSASTIAGLL 671

Query: 239 HQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQT 298
           HQNSMNSRQQN++ NAS+ YGGSSVQ+PSPGSS+ +P  QPNPS FQ PTPSSSN+  Q 
Sbjct: 672 HQNSMNSRQQNSMPNASNSYGGSSVQIPSPGSSSTVPPTQPNPSTFQPPTPSSSNSLSQP 731

Query: 299 SHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCS 358
           SH+     N MS+A+SPANIS+QQ          ALSGDADPS++QS+VQKIL EMM+ +
Sbjct: 732 SHAVAKNPNQMSAANSPANISMQQQP--------ALSGDADPSETQSSVQKILQEMMMNN 783

Query: 359 HLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGY 418
            +NG +     +VGVGS+ ND+KN+N ++ T ++T LN GN + GNG  N   G+G GGY
Sbjct: 784 QMNGPN----SLVGVGSVVNDMKNMNGVLPT-SSTGLNNGNCIGGNGAANGGSGMGGGGY 838

Query: 419 GNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQ-QDLGNQLLNGLGAVN 477
           G+MG GLGQ  MVNG+R AMGNN++MN R+GM ++A +QSMN Q QD+GNQLL GLGAVN
Sbjct: 839 GSMGSGLGQPVMVNGMRTAMGNNTIMNRRIGMASLALEQSMNGQPQDMGNQLLGGLGAVN 898

Query: 478 GFNNLQFDWKPSP 490
           G++NLQFDWKPSP
Sbjct: 899 GYSNLQFDWKPSP 911

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49523817|emb|CAF18249.1| SEU3A protein [Antirrhinum majus]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 350/497 (70%), Positives = 409/497 (82%), Gaps = 30/497 (6%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
           MPREYQN+SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCA+RHEELI
Sbjct: 428 MPREYQNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCAQRHEELI 487

Query: 61  PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
           PRRLLIPQ  QLGAAAQKYQAATQNA S  S  ELQNNCN FVASARQLAKALEVPLVND
Sbjct: 488 PRRLLIPQXGQLGAAAQKYQAATQNAGSTASVSELQNNCNTFVASARQLAKALEVPLVND 547

Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPED 180
           LGYTKRYVRCLQISEVVNSMKDLIDYSR T TGPMESLAKFPRRT+ + GF S  Q  + 
Sbjct: 548 LGYTKRYVRCLQISEVVNSMKDLIDYSRHTSTGPMESLAKFPRRTNPSPGFQSQPQ--QP 605

Query: 181 QLQQQQQQQQTVGQNSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQ 240
           + Q QQQQ QT GQN N+++SVQA AMQLA+SNG+ +VNN++N    +S+A TI GLLHQ
Sbjct: 606 EGQLQQQQYQTPGQNPNNDNSVQAAAMQLASSNGMPSVNNTMNSLPTTSSAGTIAGLLHQ 665

Query: 241 NSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAQPNPSPFQSPTPSSSNNPPQTSH 300
           NSMNSRQQN ++NA+SPYGGSSVQMPSPG S+++PQAQP+PSPFQSPTPSSSNN PQ +H
Sbjct: 666 NSMNSRQQNPMSNANSPYGGSSVQMPSPGPSSSMPQAQPSPSPFQSPTPSSSNNNPQPTH 725

Query: 301 SALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQSAVQKILHEMMLCSHL 360
           ++L+ A H +S +SP N+S+QQP         ALSGDAD +DSQS+VQKI+H+MM+ S L
Sbjct: 726 NSLSGA-HFNSVTSP-NVSMQQP---------ALSGDADANDSQSSVQKIIHDMMMSSQL 774

Query: 361 NGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGNGTVNNNPGIGTGGYGN 420
           +GG      M+G+G++G+D+KNVN ++++ NN  +NG N LVGNG  N N  +   G+G 
Sbjct: 775 SGGG-----MMGMGNMGSDMKNVNVMLSSNNNASMNGSNILVGNGMANGN--MSGPGFGG 827

Query: 421 MGGGLGQSAMVNGIRAAMGNNS--MMNGRVGMTAMARDQSMNH--QQDLGNQLLNGLGAV 476
           +GGG GQ A+VNGI AA+GNN+   MNGRVGM AMAR+Q+MNH  QQD+GNQLL+GLGAV
Sbjct: 828 IGGGRGQPALVNGIPAALGNNNSLSMNGRVGM-AMAREQTMNHQQQQDMGNQLLSGLGAV 886

Query: 477 NGF---NNLQFDWKPSP 490
           NGF   +NL  DWK SP
Sbjct: 887 NGFQYPSNL--DWKTSP 901

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
TAIR|locus:2029137	877	SEU "seuss" [Arabidopsis thali	0.695	0.388	0.513	3.9e-89
TAIR|locus:2131804	748	SLK1 "SEUSS-like 1" [Arabidops	0.334	0.219	0.545	3e-47
TAIR|locus:2174028	816	SLK2 "AT5G62090" [Arabidopsis	0.524	0.314	0.428	1.4e-46
TAIR|locus:504955415	685	SLK3 "SEUSS-like 3" [Arabidops	0.548	0.392	0.398	7.2e-45
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.432	0.566	0.174	5.1e-05

TAIR|locus:2029137 SEU "seuss" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
 Identities = 192/374 (51%), Positives = 230/374 (61%)

Query:     1 MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
             MPRE QN+SGQIVL+YAKA QESVFE LRVVRDGQLRIVFSPDLKI SWEFCARRHEELI
Sbjct:   406 MPRESQNSSGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELI 465

Query:    61 PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
             PRRLLIPQVSQLG+AAQKYQ A QNA+++ + PELQNNCNMFVASARQLAKALEVPLVND
Sbjct:   466 PRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVASARQLAKALEVPLVND 525

Query:   121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSXXXXX 180
             LGYTKRYVRCLQISEVVNSMKDLIDYSR T TGP+ESLAKFPRRT  +S    PS     
Sbjct:   526 LGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQAS 585

Query:   181 XXXXXXXXXXXXXXNSNSESSVQANAMQLATSNG--------VA--------NVNNSLNP 224
                               +   Q    Q  + N         VA         VN + N 
Sbjct:   586 DQLRQQQQQQQQQQQQQQQQQQQQQQQQTVSQNTNSDQSSRQVALMQGNPSNGVNYAFNA 645

Query:   225 ASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSNNIPQAXXXXXXX 284
             ASAS++ S+I GL+HQNSM  R QN   N  +          SP   N++          
Sbjct:   646 ASASTSTSSIAGLIHQNSMKGRHQNAAYNPPN----------SPYGGNSVQMQSPSSSGT 695

Query:   285 XXXXXXXXXXXXXXXXXALTAANHMSSASSPANISVQQPALSGEADPRAL--SGDADPSD 342
                                +++N+    ++P+   +      G  +  A+  +G+ D ++
Sbjct:   696 MVPSSSQQQHNLPTFQSPTSSSNN----NNPSQNGIPSVNHMGSTNSPAMQQAGEVDGNE 751

Query:   343 SQSAVQKILHEMML 356
             S S+VQKIL+E+++
Sbjct:   752 S-SSVQKILNEILM 764

GO:0005634 "nucleus" evidence=ISM

GO:0003712 "transcription cofactor activity" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0060090 "binding, bridging" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2131804 SLK1 "SEUSS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
 Identities = 90/165 (54%), Positives = 122/165 (73%)

Query:     2 PREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIP 61
             PRE +  +G ++L+Y KA+QE+V EQ RVVR+G LRI+FS DLKI SWEFCARRHEEL+ 
Sbjct:   294 PRENRFPNGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSQDLKILSWEFCARRHEELLL 353

Query:    62 RRLLIPQVSQLGAAAQKYQAA-TQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
             RRL+ PQV+QL   AQK Q+  +++ S  +S  +LQ+N NM + + RQLAK +E+  +ND
Sbjct:   354 RRLIAPQVNQLLQVAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLND 413

Query:   121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRT 165
             LGY KRY+R LQISEVV SMKDL++++     GP+E L +   +T
Sbjct:   414 LGYPKRYIRTLQISEVVKSMKDLMNFTGEQKIGPIEGLKRLLEQT 458

GO:0005634 "nucleus" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

TAIR|locus:2174028 SLK2 "AT5G62090" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 120/280 (42%), Positives = 166/280 (59%)

Query:     1 MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
             +P E +  SG +VL+Y KA+QESV+E +RVVR+G LRI+FS +LKI SWEFC RRHEEL+
Sbjct:   396 VPSERRYGSGIMVLEYGKAVQESVYEHIRVVREGHLRIIFSQELKILSWEFCTRRHEELL 455

Query:    61 PRRLLIPQVSQLGAAAQKYQAAT-QNASSNLSAPELQNNCNMFVASARQLAKALEVPLVN 119
             PRRL+ PQV+QL   A+K Q+   Q+ S  +   +LQ N NM +A+ RQLAK+LE   +N
Sbjct:   456 PRRLVAPQVNQLLQVAEKCQSTIDQSGSDGIHQQDLQANSNMVMAAGRQLAKSLESHSLN 515

Query:   120 DLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSXXXX 179
             DLG++KRYVRCLQISEVV+SMKD+ID+ R    GP+E+L  +P R         P     
Sbjct:   516 DLGFSKRYVRCLQISEVVSSMKDMIDFCRDQKVGPIEALKSYPYRMKAGK----PQMQEM 571

Query:   180 XXXXXXXXXXXXXXXNS-NSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVG-- 236
                            NS N   +++ + + +  +N   +   SL P SA + A  +    
Sbjct:   572 EQLAAARGLPPDR--NSLNKLMALRNSGINIPMNN--MSGQGSL-PGSAQAAAFALTNYQ 626

Query:   237 --LLHQNSMNSRQQNTV-------NNASSP-YGGSSVQMP 266
               L+ QN +NS   NT        N ++SP Y G+S  +P
Sbjct:   627 SMLMKQNHLNSDLNNTTIQQEPSRNRSASPSYQGTSPLLP 666

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

TAIR|locus:504955415 SLK3 "SEUSS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 7.2e-45, P = 7.2e-45
 Identities = 112/281 (39%), Positives = 166/281 (59%)

Query:     2 PREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIP 61
             PRE +  +G ++L+Y KA+QE+V EQ RVVR+G LRI+FSPDLKI SWEFCARRHEEL+ 
Sbjct:   266 PRENRFPNGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSPDLKILSWEFCARRHEELLL 325

Query:    62 RRLLIPQVSQLGAAAQKYQAA-TQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
             RRL+ PQV+QL   AQK Q+  +++ S  +S  ++Q+N NM + + RQLAK +E+  +ND
Sbjct:   326 RRLIAPQVNQLLQVAQKCQSTISESGSQGVSQQDIQSNSNMVLGAGRQLAKFMELQSLND 385

Query:   121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSXXXXX 180
             LGY KRY+R LQISEVV SMKDL++++     GP+E L +   +T+              
Sbjct:   386 LGYPKRYIRTLQISEVVKSMKDLMNFTGEHKVGPLEGLKQLLEQTATVK-----LQRQKM 440

Query:   181 XXXXXXXXXXXXXXNSNSESSVQANAMQLATSNGVANVNNSLNPASA-SSTASTIVGLLH 239
                            + ++ ++ +  M  +T+N  +N ++ +    A + +      L +
Sbjct:   441 QEMEQFGNSGAMSGPAQAQMTLSSGTMSGSTANNNSNNHHQIVGRGAMNGSPQATAALTN 500

Query:   240 QNSMNSRQQNTVNNASSPYG---GSSVQMPSPGSSNNIPQA 277
               SM  RQ N +NN +S  G   G S Q P+  +SN  P +
Sbjct:   501 YQSMLIRQ-NAMNNQNSNTGNQEGFSSQNPTL-NSNQSPSS 539

GO:0005634 "nucleus" evidence=ISM

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 37/212 (17%), Positives = 87/212 (41%)

Query:   135 EVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPSXXXXXXXXXXXXXXXXXXX 194
             E  N M ++ D    +    +++ +     +S +S   S S                   
Sbjct:    43 EKTNKMAEVGDLGVASFLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 102

Query:   195 NSNSESSVQANAMQLATSNGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNA 254
             +S+S SS  +++   ++S+  ++ ++S + +S+SS++S+       +S +S   ++ +++
Sbjct:   103 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 162

Query:   255 SSPYGGSSVQMPSPGSSNNIPQAXXXXXXXXXXXXXXXXXXXXXXXXALTAANHMSSASS 314
             SS    SS    S  SS++   +                        + ++++  SS+SS
Sbjct:   163 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 222

Query:   315 PANISVQQPALSGEADPRALSGDADPSDSQSA 346
              ++ S    + S  +   + S  +  S S S+
Sbjct:   223 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 254

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020683 hypothetical protein (919 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	490
pfam01803	230	pfam01803, LIM_bind, LIM-domain binding protein	4e-47
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001

>gnl|CDD|216712 pfam01803, LIM_bind, LIM-domain binding protein

 Score =  162 bits (412), Expect = 4e-47
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 14/162 (8%)

Query: 1   MPREYQNASGQIVLDYAKAIQESVFEQ-LRVVRDGQLRIVFSPDLKICSWEFCARRHEEL 59
             RE    +G I ++  KA     ++   +VV +G LR  F PDLKI  W+FC R HEE 
Sbjct: 81  GAREQVLPNGSIFVECPKASFIYWYDDGSQVVTEGTLRAHFDPDLKIEWWDFCTRSHEEY 140

Query: 60  IPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVN 119
           IPR +L P  S L   +++             +PEL  N  +      Q   +L    V 
Sbjct: 141 IPRSVLEPLASPLHTKSKQ------------QSPELSKNSQLRQQKGPQPITSLPSSNVT 188

Query: 120 DLGYTKRYVRCLQISEVVNSMKDLIDYSRVT-GTGPMESLAK 160
             G  K  +R L+I+E+++ M+DL+ +S+      P E+L +
Sbjct: 189 RFGLPKAVMRFLEIAEILSPMQDLMSFSKANPILSPREALKQ 230

The LIM-domain binding protein, binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions. Length = 230

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 34/191 (17%), Positives = 48/191 (25%), Gaps = 18/191 (9%)

Query: 171 FHSPSQQPEDQLQQQQQQQQTVGQNSNSESSVQANAMQLATSNGVANVNNSLNPASASST 230
                Q P  Q  Q          N+ + S         A   G A       P      
Sbjct: 63  PQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPV 122

Query: 231 ASTIVGLLHQNSMNSR-----QQNTVNNASSPYG-GSSVQMPSPGSSNN----IPQAQPN 280
              ++    QN  NS      QQ  +      YG  +S Q+PS   S          Q  
Sbjct: 123 QVPVMV--TQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQP 180

Query: 281 PSPFQ-----SPTPSSSNNPPQTSHSALTAANHMSSASSP-ANISVQQPALSGEADPRAL 334
                           S    +   +  T    +  A    A   ++QP    ++  R  
Sbjct: 181 NGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLKQPKKQAKSSKRRT 240

Query: 335 SGDADPSDSQS 345
               D  DS  
Sbjct: 241 IAQIDGIDSDD 251

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	490
PF01803	240	LIM_bind: LIM-domain binding protein; InterPro: IP	100.0
KOG2181	415	consensus LIM domain binding protein LDB1/NLI/CLIM	99.61

>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development

Probab=100.00  E-value=3.4e-43  Score=334.82  Aligned_cols=157  Identities=38%  Similarity=0.620  Sum_probs=146.9

Q ss_pred             CCCccccCCCcEEEEecceeEEEEeec-eEEEEeeeEEEEECCCCceeEEEEeecceecccccchhhHHHhhhhHHHHHH
Q 011231            1 MPREYQNASGQIVLDYAKAIQESVFEQ-LRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKY   79 (490)
Q Consensus         1 ~PrE~~LpNG~~vVE~~KAs~~y~Fen-~qVV~~GtLRa~FdpdLKIEswEF~t~~HEEyIPR~~I~pqv~qL~~~aqe~   79 (490)
                      .|||++|+||.++|||+||+++|||++ ++|+++|+||++||+++||||||||+++|+|||||++|+.++.+.+.++++|
T Consensus        82 ~~~e~~l~ng~i~ie~~~~~~~~~y~~gs~v~~~G~lr~~f~~~lKIe~~df~~~~~~e~I~r~~l~~~~~~~~~~~~~~  161 (240)
T PF01803_consen   82 GPREQVLPNGSIFIECPRATFIYWYEDGSQVVHEGQLRAQFDPDLKIEWWDFCTRSHEEYIPRSALEQQASNLHPSVQIF  161 (240)
T ss_pred             CCceEEcCCCeEEEEECCEEEEEEECCceEEEEEeEEEEEECccccEEEEEEEeecccccCcHHHHHHhhccchhhhHHh
Confidence            389999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCCCchHhhhhhhhhHHHHHHHHhhccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhh-ccCCChHHHH
Q 011231           80 QAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR-VTGTGPMESL  158 (490)
Q Consensus        80 qs~~qns~d~ksSpdmsKN~n~~l~aaRQLak~ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~-~p~LGPiEAL  158 (490)
                      ++..   ++.|+++|+.|+++.+..+.+++.+.|+...|+++|||+++||||||+|||++|+|||.|++ ++.++|+|||
T Consensus       162 ~~~~---~~~k~~~~~~~~~~~~~~~~~~~~~~Lp~~~v~~~Gi~~~~mr~Lqi~evms~M~~Lm~fs~~~~~~sP~eaL  238 (240)
T PF01803_consen  162 QKLS---PDQKQSPDMSKNSKARQQKSPQLPPSLPSSNVNEFGIPERVMRCLQIAEVMSQMKDLMSFSKQNNILSPLEAL  238 (240)
T ss_pred             hhcc---cccccccchhhhhhhhhhcccccCCCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            9886   55889999999988877777888777665589999999999999999999999999999999 5559999999


Q ss_pred             hh
Q 011231          159 AK  160 (490)
Q Consensus       159 kq  160 (490)
                      ++
T Consensus       239 ~~  240 (240)
T PF01803_consen  239 EQ  240 (240)
T ss_pred             cC
Confidence            85

Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus

>KOG2181 consensus LIM domain binding protein LDB1/NLI/CLIM [Transcription]

Probab=99.61  E-value=1.7e-15  Score=152.71  Aligned_cols=131  Identities=18%  Similarity=0.329  Sum_probs=111.5

Q ss_pred             ccccCCCcEEEEecceeEEEEeec---eEEEEeeeEEEEEC--CCCceeEEEEeecceecccccchhhHHHhhhhHHHHH
Q 011231            4 EYQNASGQIVLDYAKAIQESVFEQ---LRVVRDGQLRIVFS--PDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQK   78 (490)
Q Consensus         4 E~~LpNG~~vVE~~KAs~~y~Fen---~qVV~~GtLRa~Fd--pdLKIEswEF~t~~HEEyIPR~~I~pqv~qL~~~aqe   78 (490)
                      |+.|.||.+.+||..+++|+.|..   .+|.++|+|.++|.  .-.||+.|+|+.++|.|+|||+.|+--+.        
T Consensus       130 ket~hn~s~~~dcdq~~~iTqhgkp~ft~VctegrL~lEF~fDd~MRIK~Wh~~ik~~rElvprsil~~~a~--------  201 (415)
T KOG2181|consen  130 KETLHNGSQAYDCDQVLQITQHGKPSFTEVCTEGRLYLEFAFDDVMRIKAWHLEIKRSRELVPRSILQNTAD--------  201 (415)
T ss_pred             hhhhcCCceeeeccceeEEeecCCccceeeeccceEEEEeehhhhhhhhheeeeeeccccccchhhhhccCC--------
Confidence            678999999999999999999999   99999999999974  55899999999999999999998873210        


Q ss_pred             HHHhhhcCCCCCCchHhhhhhhhhHHHHHHHHhhccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhhccCCChHHHH
Q 011231           79 YQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESL  158 (490)
Q Consensus        79 ~qs~~qns~d~ksSpdmsKN~n~~l~aaRQLak~ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~~p~LGPiEAL  158 (490)
                              .|......++||                   ++++||++.++.+|.++.|+..|++||.-.+...|+|+|+|
T Consensus       202 --------~dp~~ldq~~kN-------------------itR~G~~nsTlNylrlcvILePMQelMSrhKayalsPRdcl  254 (415)
T KOG2181|consen  202 --------YDPEALDQEQKN-------------------ITRMGFFNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCL  254 (415)
T ss_pred             --------CChhhhChhhcc-------------------ccccccchhhHHHHHHHHHHhHHHHHHHhccccCCCHHHHH
Confidence                    111122334455                   67999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCC
Q 011231          159 AKFPRRTSGAS  169 (490)
Q Consensus       159 kqfv~q~~~~~  169 (490)
                      |.-.=+.|...
T Consensus       255 KttLFQkwQrM  265 (415)
T KOG2181|consen  255 KTTLFQKWQRM  265 (415)
T ss_pred             HHHHHHHhhhh
Confidence            98777776543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	490
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 46/229 (20%)

Query: 4   EYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSP-DLKICSWEFCARRHEELIPR 62
           E+Q     I+  +  A  ++ F+  + V+D   + + S  ++          +       
Sbjct: 13  EHQYQYKDILSVFEDAFVDN-FD-CKDVQD-MPKSILSKEEID----HIIMSKDAVSGTL 65

Query: 63  RLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASA---RQLAKALEV---- 115
           RL    +S+     +  Q   +          L+ N   F+ S     Q   ++      
Sbjct: 66  RLFWTLLSK---QEEMVQKFVEEV--------LRINYK-FLMSPIKTEQRQPSMMTRMYI 113

Query: 116 ----PLVNDLG-YTKRYV-RCLQISEVVNSMKDLIDYSRVT-----GTG----PMESLAK 160
                L ND   + K  V R     ++  ++ +L     V      G+G     ++    
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 161 FPRRTSGASGFH----SPSQQPEDQLQQQQQQQQTVGQNSNSESSVQAN 205
           +  +                 PE  L+  Q+    +  N  S S   +N
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00