Citrus Sinensis ID: 011260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Protein Sequence
MVIPTAVAGGAGGTFCSVCSSNLFPKPKSCQDVAMETIEETVETENKIPLITVKEDEEEEKEASTYENSNGGGPSSSSSSMPTLPRIKEEEEEEEEEEEEEEGAFDDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGGYVNELAEQVDCDGSIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccHHHHHHHHHccccccccHHHHHHHHcccccccccccEEEEcccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEEcccHHHcccHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccHcccHHHHHcHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccEccccccccccccccccHHHHHHHHHHccccccccccccccEEcccccEEEEHHHHcccccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mviptavaggaggtfcsvcssnlfpkpkscqDVAMETIEETVEtenkiplitvkedeeeekeastyensngggpssssssmptlprikeeeeeeeeeeeeeegafddelvgggslpkpmeglnevgpppflRKIYEMvedpetdpvvswslnrnsfivweshdfsenllpkyfkhknfSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSrfnkaqdgtvtlACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQqrelhgdefklskkprltatqlesqsvpesvdssenvncRNQAREQLATMQSELTdmlpadstnidttdtppafqalmdddglcrspiqdlkgnvmctcgngttitaqdsssVYNTFLGnvlgdssitengtdddqvavsdSQLFHELEDLigkshswggyVNELAeqvdcdgsil
Flexible Loop (DISEMBL)
mviptavaggaggtFCSVCSSNLFPKPKSCQDVAMETIEetvetenkiplitvkedeeeekeastyensngggpssssssmptlpRIKEEEEeeeeeeeeeegafddelvGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRrsrfnkaqdgtvtlACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQqrelhgdefklskkprltatqlesqsvpesvdssenvnCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCGNGTtitaqdsssvYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGGYVNELaeqvdcdgsil
Low Complexity Region (SEG)
MVIPTAVAGGAGGTFCSVCSSNLFPKPKSCQDVAMETIEETVETENKIPLITVkedeeeekeASTYEnsngggpssssssMPTLPRIKeeeeeeeeeeeeeeGAFDDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGGYVNELAEQVDCDGSIL
Disordered region (IsUnstruct)
*****AVAGGAGGTFCSVCSSNLFP********************************************************************************************************FLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKL******SLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVH********************************************************************************LMDDDGLCRSPIQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDS*************V*DSQLFHELEDLIGKSHSWGGYVNELAEQV*******
Disordered Region (DISOPRED)
*********GA**TFCSVCSS************************************************************************************************************FLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLL*******************************************RLEMLKLRQQQDESLCQMSAVAE******CKQQQMLNFFAKIAKY*****************************************************************************************************************************************************************EDLIGKSHSWGGYVNELAEQVDCDG*IL
Disordered Region (DISEMBL)
MVIPTAVAGGAGGTFCSVCSSNLFPKPKSCQDVAMETIEETVETENKIPLITVKE**************************************************DDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTA******************NCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGGYVNELAEQVDCDGSIL
Disordered Region (DISPRO)
****************SVCSSNLFPKPKSCQDVAMETIEETVETENKIPLITVKED*E**********************************************************KP****NEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRR********************FGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQ************************************************************************************************************SSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGGYVNELAEQVDCDGSIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVIPTAVAGGAGGTFCSVCSSNLFPKPKSCQDVAMETIEETVETENKIPLITVKEDEEEEKEASTYENSNGGGPSSSSSSMPTxxxxxxxxxxxxxxxxxxxxxxxxxLVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMExxxxxxxxxxxxxxxxxxxxxQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGGYVNELAEQVDCDGSIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	490	2.2.26 [Sep-21-2011]
O80982	345	Heat stress transcription	yes	no	0.440	0.626	0.558	3e-67
P41152	351	Heat shock factor protein	N/A	no	0.663	0.925	0.405	2e-66
Q9LVW2	331	Heat stress transcription	no	no	0.418	0.619	0.580	2e-61
Q9LUH8	406	Heat stress transcription	no	no	0.418	0.504	0.462	3e-58
Q338B0	358	Heat stress transcription	yes	no	0.471	0.645	0.477	2e-57
Q6VBB2	372	Heat stress transcription	no	no	0.442	0.583	0.461	1e-56
Q6F388	357	Heat stress transcription	no	no	0.455	0.624	0.464	2e-56
Q84MN7	376	Heat stress transcription	no	no	0.461	0.601	0.475	3e-56
Q8H7Y6	359	Heat stress transcription	no	no	0.434	0.593	0.479	1e-55
Q84T61	506	Heat stress transcription	no	no	0.389	0.377	0.494	4e-53

>sp|O80982|HSFA2_ARATH Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1

 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 156/222 (70%), Gaps = 6/222 (2%)

Query: 116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
           P+PMEGLNE GPPPFL K YEMVEDP TD VVSWS  RNSF+VW+SH FS  LLP+YFKH
Sbjct: 31  PRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKH 90

Query: 176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRF---NKAQDGTVTL 232
            NFSSFIRQLNTYGF+KI  +RWEFANE F  G+KHLLKNIKRR      N  Q G+  +
Sbjct: 91  SNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGS-GM 149

Query: 233 ACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQML 292
           +CV+  ++G + E+E L+ D   L  E+++LRQQQ  S  Q++A+ +R+   E +QQQM+
Sbjct: 150 SCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMM 209

Query: 293 NFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTAT 334
            F AK    PNFVQQ     K+++ L G    + +K RLT+T
Sbjct: 210 TFLAKALNNPNFVQQFAVMSKEKKSLFG--LDVGRKRRLTST 249

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs).
Arabidopsis thaliana (taxid: 3702)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 213/370 (57%), Gaps = 45/370 (12%)

Query: 118 PMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKN 177
           PMEGL++VGPPPFL K YEMVED  TD V+SWS  RNSFIVW+SH FS  LLP++FKH N
Sbjct: 20  PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSN 79

Query: 178 FSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDS 237
           FSSFIRQLNTYGF+K+  +RWEFANE F GG+KHLLK IKRR    ++ +   + AC++ 
Sbjct: 80  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEI 139

Query: 238 AKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297
             +G+E ELE L+ D+  L  E++KLRQQQ  +  Q+ A+ E+I   E KQ QM++F AK
Sbjct: 140 GYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAK 199

Query: 298 IAKYPNFVQQL----VHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNC 353
           I   P F+QQ     VH++ +QR       ++ +K RLT T       P    S + +N 
Sbjct: 200 IFSNPTFLQQYLDKQVHRKDKQR------IEVGQKRRLTMT-------PSVTGSDQPMNY 246

Query: 354 RNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTC 413
            +  +E  A + S   +ML               F A MD++        +++ + + T 
Sbjct: 247 SSSLQESEAELAS--IEML---------------FSAAMDNESSS-----NVRPDSVVTA 284

Query: 414 GNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWG 473
            NGT     D   V +     +L +  I+ +   ++ V V   +   E+EDL+ K+  WG
Sbjct: 285 -NGT-----DMEPVADDIWEELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWG 338

Query: 474 GYVNELAEQV 483
             + +L +Q+
Sbjct: 339 EELQDLVDQL 348

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q9LVW2|HSFA9_ARATH Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/217 (58%), Positives = 159/217 (73%), Gaps = 12/217 (5%)

Query: 122 LNEVG-PPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSS 180
           L+E+G   PFLRK +E+V+D  TDPVVSWS  R SFI+W+S++FSENLLPKYFKHKNFSS
Sbjct: 63  LHEIGLITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSS 122

Query: 181 FIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKF 240
           FIRQLN+YGFKK+ S+RWEFANE F+GGKKHLLKNIKRRS+  K  +        +++  
Sbjct: 123 FIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNK-------EASTT 175

Query: 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAK 300
             E E+E+L+ +Q  +RLEMLKL+QQQ+ES  QM  V E+I   + +QQ ML+FFAK+AK
Sbjct: 176 TTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAK 235

Query: 301 YPNFVQQLVHKRKQ--QRELHGDEFKLSKKPRLTATQ 335
              FV++LV KRK   QREL   EF   KK +L   Q
Sbjct: 236 DQRFVERLVKKRKMKIQRELEAAEF--VKKLKLLQDQ 270

Seed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  226 bits (576), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 154/214 (71%), Gaps = 9/214 (4%)

Query: 114 SLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYF 173
           S P+P+EGL+E GPPPFL K Y++VED  T+ VVSWS + NSFIVW+   FS  LLP++F
Sbjct: 46  SYPQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFF 105

Query: 174 KHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLA 233
           KH NFSSF+RQLNTYGF+K++ +RWEFANE F  G+KHLLKNI+RR   N +       +
Sbjct: 106 KHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQS 165

Query: 234 ---------CVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284
                    C++  ++G++ E+++LR D++ L +E+++LRQQQ  +   ++ + E+++  
Sbjct: 166 SEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKT 225

Query: 285 ECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQREL 318
           E KQ+QM++F A+  + P+F+QQLV ++++++E+
Sbjct: 226 ESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEI 259

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 170/247 (68%), Gaps = 16/247 (6%)

Query: 87  IKEEEEEEEEEEEEEEGAFDDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPV 146
           +KEE  E ++++ +E+G         G+ P+PMEGL+EVGPPPFL K Y++VEDP TD V
Sbjct: 9   VKEEMLESQQQQRQEDG---------GAAPRPMEGLHEVGPPPFLTKTYDLVEDPATDGV 59

Query: 147 VSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFR 206
           VSWS   NSF+VW+ H F++ LLP+ FKH NFSSF+RQLNTYGF+K+  +RWEFANE F 
Sbjct: 60  VSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFL 119

Query: 207 GGKKHLLKNIKRR---SRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKL 263
            G++HLLK IKRR   S    +Q  ++T +C++  +FG E E++ L+ D+  L  E++KL
Sbjct: 120 RGQRHLLKTIKRRKPPSNAPPSQQQSLT-SCLEVGEFGFEEEIDRLKRDKNILITEVVKL 178

Query: 264 RQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEF 323
           RQ+Q  +   + A+ +R+R AE KQ QM+ F A+  + P F QQL  ++++++EL   E 
Sbjct: 179 RQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRKEL---ED 235

Query: 324 KLSKKPR 330
            +SKK R
Sbjct: 236 AISKKRR 242

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 149/221 (67%), Gaps = 4/221 (1%)

Query: 116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
           P+PMEGL++ GPPPFL K Y+MV+D  TD  VSWS   NSF+VW+ H F+  LLP++FKH
Sbjct: 39  PRPMEGLHDAGPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKH 98

Query: 176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLA-C 234
            NFSSF+RQLNTYGF+K+  +RWEFANE F  G++HLLKNIKRR   +       +L   
Sbjct: 99  NNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPY 158

Query: 235 VDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNF 294
           ++   FG + E++ L+ D++ L  E++KLRQ+Q  +   + A+ +R++  E +QQQM+ F
Sbjct: 159 LEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAF 218

Query: 295 FAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQ 335
            A++ K P F++QL+ + + ++EL      +SKK R    Q
Sbjct: 219 LARVMKNPEFLKQLMSQNEMRKELQD---AISKKRRRRIDQ 256

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 150/226 (66%), Gaps = 3/226 (1%)

Query: 110 VGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLL 169
           V  G  P+PM+GL + GPPPFL K Y+MV+DP TD VVSWS   NSF+VW+ H F   LL
Sbjct: 19  VANGQPPRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLL 78

Query: 170 PKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGT 229
           P+YFKH NFSSF+RQLNTYGF+K+  ++WEFANE F  G+KHLLK+IKRR   N +    
Sbjct: 79  PRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQ 138

Query: 230 VTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQ 289
              + ++   FG E E++ L+ D+  L  E++KLRQ+Q  +   + A+ ++++  E KQQ
Sbjct: 139 SLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQ 198

Query: 290 QMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQ 335
            M+ F +++   P F++QL  + + ++EL  +EF +SKK R    Q
Sbjct: 199 HMMAFLSRVMHNPEFIRQLFSQSEMRKEL--EEF-VSKKRRRRIDQ 241

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84MN7|HFA2A_ORYSJ Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/246 (47%), Positives = 150/246 (60%), Gaps = 20/246 (8%)

Query: 102 EGAFDDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWES 161
           EG+     VG   LP+PMEGL E GPPPFL K YE+V+DP TD V+SW    NSF+VW++
Sbjct: 26  EGSPSSWAVGVMDLPRPMEGLGEAGPPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDA 85

Query: 162 HDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSR 221
           + F+  LLP+YFKH NFSSF+RQLNTYGF+K+  +RWEFANE F  GKK LLK IKRR  
Sbjct: 86  NAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRP 145

Query: 222 FNKAQDGTV------------TLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDE 269
              +   +               AC++  +FG +  +  L+ D+  L  E++KLRQ+Q  
Sbjct: 146 PPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQT 205

Query: 270 SLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGD-----EFK 324
           +  QM A+ ERI  AE KQQQM  F A+  K P F+Q LV ++  Q   HG      E  
Sbjct: 206 TRAQMQAMEERISAAEQKQQQMTVFLARAMKNPGFLQMLVDRQAGQ---HGARNRVLEDA 262

Query: 325 LSKKPR 330
           LSKK R
Sbjct: 263 LSKKRR 268

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7Y6|HFA2D_ORYSJ Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 145/217 (66%), Gaps = 4/217 (1%)

Query: 113 GSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKY 172
           G  P+PMEGL+EVGPPPFL K +++V DP TD VVSW    +SF+VW+ H F+   LP++
Sbjct: 21  GEAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRF 80

Query: 173 FKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTL 232
           FKH NFSSF+RQLNTYGF+KI  +RWEFAN+ F  G++HLLK IKRR   +        L
Sbjct: 81  FKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQAL 140

Query: 233 A-CVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQM 291
             C++  +FG++ E++ L+ D+  L  E++KLR +Q  +   M A+ ER++ AE KQ QM
Sbjct: 141 GTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQM 200

Query: 292 LNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKK 328
           + F A+  + P+F  QL+H   QQ ++ G E   SKK
Sbjct: 201 MGFLARAMQNPDFFHQLIH---QQDKMKGLEDTFSKK 234

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  209 bits (532), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 130/198 (65%), Gaps = 7/198 (3%)

Query: 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQL 185
            PPPFL K YEMV+DP TD VVSW    NSF+VW + +F+ +LLPKYFKH NFSSF+RQL
Sbjct: 34  APPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQL 93

Query: 186 NTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRF---NKAQD----GTVTLACVDSA 238
           NTYGF+K+  +RWEFANE F  G+KHLLK I RR      N+ Q          ACV+  
Sbjct: 94  NTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVG 153

Query: 239 KFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKI 298
           KFG+E E+E L+ D+  L  E+++LRQQQ  +  Q+  + +R++  E +QQQM++F AK 
Sbjct: 154 KFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKA 213

Query: 299 AKYPNFVQQLVHKRKQQR 316
              P F+ Q V + +  R
Sbjct: 214 MHSPGFLAQFVQQNENSR 231

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
255546133	478	Heat shock factor protein HSF30, putativ	0.934	0.958	0.488	1e-107
356545733	408	PREDICTED: heat stress transcription fac	0.720	0.865	0.481	1e-89
356561927	404	PREDICTED: heat stress transcription fac	0.691	0.839	0.471	7e-86
359484303	398	PREDICTED: heat stress transcription fac	0.708	0.871	0.480	1e-80
297738649	663	unnamed protein product [Vitis vinifera]	0.571	0.422	0.543	2e-77
224091264	212	predicted protein [Populus trichocarpa]	0.422	0.976	0.668	5e-76
388252715	408	HSFA9 [Coffea arabica]	0.738	0.887	0.402	1e-68
406047594	362	heat stress transcription factor A2 [Cap	0.687	0.930	0.411	2e-67
356564043	355	PREDICTED: heat stress transcription fac	0.646	0.892	0.424	5e-67
224092170	345	predicted protein [Populus trichocarpa]	0.687	0.976	0.423	6e-67

>gi|255546133|ref|XP_002514126.1| Heat shock factor protein HSF30, putative [Ricinus communis] gi|223546582|gb|EEF48080.1| Heat shock factor protein HSF30, putative [Ricinus communis]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/504 (48%), Positives = 319/504 (63%), Gaps = 46/504 (9%)

Query: 1   MVIPTAVAGGAGGTFCSVCSSNLFPKPKSCQDVAMETIEETVETENKIPLI----TVKED 56
           MV P   + G GG F    S+   P P        E+ E  VE ++K          K+D
Sbjct: 1   MVAPDTSSCGGGGDFSPTFSATFLPIP------LQESTEPIVEKDDKFVQPRESNVEKDD 54

Query: 57  EEEEKEASTYENSNGGGPSSSSSSMPTLPRIKEEEEEEEEEEEEEE-GAFDDELVGGGS- 114
           +  E   +  +      P  SSS +  +   +EEEEE+E  +EE++ G F D +    + 
Sbjct: 55  KFVESVIAIKKEVMPLVPDDSSSRVVAIKEEEEEEEEDEVGKEEKDTGDFRDSVTNNNNG 114

Query: 115 ---------LPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFS 165
                    LPKPMEGL+E GPPPFL+K +EMVEDP+TD  VSWS NR SFIVW++H+FS
Sbjct: 115 SSSSSSSVDLPKPMEGLHENGPPPFLKKTFEMVEDPDTDCTVSWSENRGSFIVWDAHEFS 174

Query: 166 ENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKA 225
           ++LLPKYFKH NFSSFIRQLNTYGF+KI  +RWEFANE F+GGKKHLLKNIKRRSR ++ 
Sbjct: 175 KHLLPKYFKHCNFSSFIRQLNTYGFRKIDPDRWEFANEGFQGGKKHLLKNIKRRSRHSRP 234

Query: 226 QDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAE 285
           Q G  ++   DSAK G+E ELE L+ND   LR+E+LKL+QQ+++S  Q+S V +RIR AE
Sbjct: 235 QQGAASIDA-DSAKPGLEAELENLKNDHDLLRVEILKLKQQREDSDNQLSIVEQRIRYAE 293

Query: 286 CKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPES- 344
            KQ QM  FFAK  K  +F+Q L+HK+KQQREL G EF   KK RL   Q ++Q VPES 
Sbjct: 294 TKQLQMFIFFAKATKNRSFIQNLIHKKKQQRELDGSEF--VKKRRLVPDQTQTQ-VPESP 350

Query: 345 --VDSSENVNCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPI 402
             VD+S++V CRNQA++ LATMQ+ELT+ML     N +T       +A +  DG C   +
Sbjct: 351 NAVDASQSVICRNQAQKHLATMQTELTEML---KENTETNPMSKLLEAPL-TDGFC---V 403

Query: 403 QDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHEL 462
           +D K NVMC+ G       QD  SVY+     +L D+ I+E+  D+D V V+DS  + EL
Sbjct: 404 EDHKANVMCSNG-------QD--SVYHLMSETLLDDNVISEDSVDEDSV-VNDSTFYLEL 453

Query: 463 EDLIGKSHSWGGYV-NELAEQVDC 485
           EDLIGK  +WGGYV +EL E   C
Sbjct: 454 EDLIGKPRTWGGYVTHELVEHAGC 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545733|ref|XP_003541290.1| PREDICTED: heat stress transcription factor A-2-like [Glycine max]

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/382 (48%), Positives = 253/382 (66%), Gaps = 29/382 (7%)

Query: 105 FDDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDF 164
            DD  V G S PKPMEGL+EVGPPPFL+K +EMVEDP TDP+VSWS  R+SFIVW+SH+F
Sbjct: 50  IDDGAVNGSSSPKPMEGLHEVGPPPFLKKTFEMVEDPHTDPIVSWSQTRDSFIVWDSHEF 109

Query: 165 SENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNK 224
           S++LLPKYFKH NFSSF+RQLNTYGF+K+ S+RWEFANE F+GGKKHLLKNI+RR ++NK
Sbjct: 110 SKSLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRCKYNK 169

Query: 225 AQDGTVTLA--CVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR 282
              G   +   CVDS       E+E L+ DQ  L++E+LKLRQQQ+ S  Q++ V ERIR
Sbjct: 170 LHQGAFNMMKPCVDS-------EVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIR 222

Query: 283 CAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVP 342
           CAE KQ QM+ F  ++A+ P FV+QLVHK +++RE+ G+E  + K+PRL  T       P
Sbjct: 223 CAEVKQYQMMYFLTRMARRPAFVEQLVHKIRRKREIDGNE--MVKRPRLMGTPCHV-PFP 279

Query: 343 ESVDSSENVNCRN-QAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSP 401
           ++++++ + + R+ Q  +Q AT+QSEL  +L +++ N    + P        +D LC S 
Sbjct: 280 KTMETTPDFDHRHQQGHKQFATLQSELNGLL-SETVNTGRMEHPTPSPL---EDELCSS- 334

Query: 402 IQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHE 461
           +Q L+ +     G         SSS Y     +V+ +  + EN   D+++ V+DS ++ E
Sbjct: 335 LQGLRAH-----GISRASAQDASSSAY-----HVMSEKLMRENSIVDEELDVNDSNIYLE 384

Query: 462 LEDLIGKSHSWG-GYVNELAEQ 482
           LEDLI K   W  G  + L EQ
Sbjct: 385 LEDLITKPTDWSVGSASGLVEQ 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561927|ref|XP_003549228.1| PREDICTED: heat stress transcription factor A-2-like [Glycine max]

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 176/373 (47%), Positives = 247/373 (66%), Gaps = 34/373 (9%)

Query: 116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
           PKPMEGL+EVGPPPFL+K +EMVEDP T+P+VSWS  R+SF+VW+SH+FS+ LLPKYFKH
Sbjct: 60  PKPMEGLHEVGPPPFLKKTFEMVEDPHTNPIVSWSQTRHSFVVWDSHEFSKTLLPKYFKH 119

Query: 176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACV 235
            NFSSF+RQLNTYGF+K+ S+RWEFANE F+GGKKHLLKNI+RRS+ NK   G   +   
Sbjct: 120 SNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKCNKLHQGAFNMMKP 179

Query: 236 DSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295
           D     V+ E+E L+ DQ  L++E+LKLRQQQ+ S  Q++ V ERIRCAE KQ QM+ F 
Sbjct: 180 D-----VDSEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAEMKQFQMMYFL 234

Query: 296 AKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNCRN 355
            ++A+ P FV+QLVHK +++RE+ G++  + K+PRL          P++++++ N + R+
Sbjct: 235 TRMARRPAFVEQLVHKIRRKREIDGND--MVKRPRLMGNPCHV-PFPKTMETTPNFDYRH 291

Query: 356 -QAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVM--CT 412
            Q  +Q AT+QSEL ++   +S+ ++   TP              SP++D  GN +    
Sbjct: 292 QQGHKQFATLQSEL-NVTEVNSSRMEHP-TP--------------SPLEDELGNSLQGLR 335

Query: 413 CGNGTTITAQD-SSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHS 471
               +   AQD SSS Y     +V+ +  + EN   D+++ V+DS ++ ELEDLI K   
Sbjct: 336 AHGCSRARAQDASSSAY-----HVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTD 390

Query: 472 WG-GYVNELAEQV 483
           W  G  + L EQ 
Sbjct: 391 WSVGSASGLVEQT 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484303|ref|XP_002279393.2| PREDICTED: heat stress transcription factor A-2-like [Vitis vinifera]

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 182/379 (48%), Positives = 241/379 (63%), Gaps = 32/379 (8%)

Query: 109 LVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENL 168
           L     + KPMEGL+E GPPPFL+K +EMVEDPETD VVSWS+ RNSFIVW+SH+FS++L
Sbjct: 49  LAAAAEVAKPMEGLHEAGPPPFLKKTFEMVEDPETDSVVSWSVARNSFIVWDSHNFSQSL 108

Query: 169 LPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDG 228
           LPKYFKH NFSSFIRQLNTYGF+KI S+RWEFANE F+GGK+HLLKNIKRR      Q G
Sbjct: 109 LPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEAFQGGKRHLLKNIKRRRHGCLQQQG 168

Query: 229 TVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQ 288
           + + A  +S K  +E E+E+LR DQ  L +E+L++RQ+Q+ S   ++AV ERIR AECKQ
Sbjct: 169 SRSGA--ESVKLQLEAEVESLRKDQNILNVEILRMRQRQETSQNHLTAVEERIRGAECKQ 226

Query: 289 QQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSS 348
           +QM  F AK  K P+FVQQL+ KR Q+REL   E  + KK RL A+ L   S+ E++ S+
Sbjct: 227 KQMFIFMAKAVKNPSFVQQLIQKR-QKRELGDGE--IGKKRRL-ASMLSVGSLLEAIFSN 282

Query: 349 ENVNCRNQ-AREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKG 407
           + V+ RNQ   ++  ++QSE+  +     + ID            D+ G   SP +D + 
Sbjct: 283 QTVHYRNQNLVQEEPSLQSEIQSLF---CSGID------------DESG--GSPPEDQEA 325

Query: 408 NVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIG 467
           NV+   GN       D  S  N  L  ++ +  I +N   ++ ++   S L  ELE+ I 
Sbjct: 326 NVISGTGN------PDLLSFNNGMLEKLMEEDPICQNEA-EELLSGKPSILDFELEEWIE 378

Query: 468 KSHSWGGYVNELAE-QVDC 485
           K   W  YV EL E Q  C
Sbjct: 379 KPVDWSVYVKELMEPQFGC 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738649|emb|CBI27894.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/287 (54%), Positives = 204/287 (71%), Gaps = 7/287 (2%)

Query: 89  EEEEEEEEEEEEEEGAFDDELVGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVS 148
           +EE+  E +   E G     L     + KPMEGL+E GPPPFL+K +EMVEDPETD VVS
Sbjct: 376 KEEKMLEADGGGESGWCCSSLAAAAEVAKPMEGLHEAGPPPFLKKTFEMVEDPETDSVVS 435

Query: 149 WSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGG 208
           WS+ RNSFIVW+SH+FS++LLPKYFKH NFSSFIRQLNTYGF+KI S+RWEFANE F+GG
Sbjct: 436 WSVARNSFIVWDSHNFSQSLLPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEAFQGG 495

Query: 209 KKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQD 268
           K+HLLKNIKRR      Q G+ + A  +S K  +E E+E+LR DQ  L +E+L++RQ+Q+
Sbjct: 496 KRHLLKNIKRRRHGCLQQQGSRSGA--ESVKLQLEAEVESLRKDQNILNVEILRMRQRQE 553

Query: 269 ESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKK 328
            S   ++AV ERIR AECKQ+QM  F AK  K P+FVQQL+ KR Q+REL   E  + KK
Sbjct: 554 TSQNHLTAVEERIRGAECKQKQMFIFMAKAVKNPSFVQQLIQKR-QKRELGDGE--IGKK 610

Query: 329 PRLTATQLESQSVPESVDSSENVNCRNQ-AREQLATMQSELTDMLPA 374
            RL A+ L   S+ E++ S++ V+ RNQ   ++  ++QSE+  +  A
Sbjct: 611 RRL-ASMLSVGSLLEAIFSNQTVHYRNQNLVQEEPSLQSEIQSLFFA 656

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091264|ref|XP_002309214.1| predicted protein [Populus trichocarpa] gi|222855190|gb|EEE92737.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 164/208 (78%), Gaps = 1/208 (0%)

Query: 116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
           PKPMEGL+E GPPPFL+K +EMV DPETD  VSW  NR+SF+VW+SH+FS+NLLPKYFKH
Sbjct: 1   PKPMEGLHEAGPPPFLKKTFEMVGDPETDETVSWGKNRDSFVVWDSHEFSKNLLPKYFKH 60

Query: 176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACV 235
            NFSSFIRQLNTYGF+KI  +RWEFANE F G KKHLLK IKRRSR+NK Q G VT    
Sbjct: 61  SNFSSFIRQLNTYGFRKIDPDRWEFANEGFHGAKKHLLKTIKRRSRYNKQQSGAVT-GVN 119

Query: 236 DSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295
           DS K  +E ELE L++DQ  LRLE+LK+RQ+Q ES  Q+SAV ERI+ AECKQ QM  FF
Sbjct: 120 DSTKPRLEAELENLKDDQDVLRLEILKIRQKQQESQTQLSAVEERIQAAECKQLQMFIFF 179

Query: 296 AKIAKYPNFVQQLVHKRKQQRELHGDEF 323
            K A+ P F+QQL+ KRKQ+ ++ G EF
Sbjct: 180 TKAARNPGFIQQLIQKRKQKGKVDGIEF 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388252715|gb|AFK24440.1| HSFA9 [Coffea arabica]

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 160/398 (40%), Positives = 229/398 (57%), Gaps = 36/398 (9%)

Query: 100 EEEGAFDD---ELVGGG---SLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNR 153
           +E+G F +      GGG    +PKP++GL+EVGPPPFL+K +EMV+DPETD  +SWS   
Sbjct: 39  DEDGPFGNVSSNFSGGGEFSDVPKPLQGLHEVGPPPFLKKTFEMVDDPETDSTISWSSTN 98

Query: 154 NSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLL 213
            SF+VW+ H FS +LLPK+FKH NFSSF+RQLNTY F+K  S+RWEFANE+F+ GKKHLL
Sbjct: 99  TSFVVWDPHKFSRDLLPKHFKHNNFSSFVRQLNTYRFRKTDSDRWEFANEEFQKGKKHLL 158

Query: 214 KNIKRRSRFNKA-QDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLC 272
           KNIKRR + ++  Q        +DSA +  E EL+ LRNDQ TL+LE+L+L+QQQ  +  
Sbjct: 159 KNIKRRKQHSQMLQHQGAGQPWLDSANYISETELQKLRNDQNTLKLELLRLKQQQVNTEN 218

Query: 273 QMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLT 332
            ++AV ER+R AE KQ+ M  F  K  K P FVQ  + K KQ+R L   E  +SKK RL 
Sbjct: 219 YLAAVKERLRTAESKQKYMAIFMVKAFKNPLFVQLFIEKMKQKRALGSGE--VSKKRRLA 276

Query: 333 ATQLESQSVPESVDSSENVNCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALM 392
             Q  ++++ E+++++   N  +  R+ +     +  ++ P D    + T   P  Q L 
Sbjct: 277 GPQ-GNENLTEAMNAAN--NSLDATRKAV-----DGKNLQPQD----ELTTVDPEIQILF 324

Query: 393 DDDGLCRSPIQDLKGNVMCTCGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVA 452
             D     P+Q+              + A  ++S        ++ D  I EN   + +  
Sbjct: 325 SPDHESSGPLQE------------QLVGASSNTSENFILWEKLMEDDMIYEN---EPETG 369

Query: 453 VSDSQLFHELEDLIGKSHSWGGYVNELAEQVDCDGSIL 490
            S S++  ELE+LI K  SWG    +LA        ++
Sbjct: 370 KSQSEIVLELENLIAKPPSWGMNTKDLAGHASYPAGLM 407

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406047594|gb|AFS33109.1| heat stress transcription factor A2 [Capsicum annuum]

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/369 (41%), Positives = 214/369 (57%), Gaps = 32/369 (8%)

Query: 118 PMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKN 177
           PMEGL++VGPPPFL K YE VED  TD V+SWS  RNSFIVW+SH FS  LLP++FKH N
Sbjct: 20  PMEGLHDVGPPPFLSKTYETVEDSSTDEVISWSRERNSFIVWDSHKFSTTLLPRFFKHSN 79

Query: 178 FSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDS 237
           FSSFIRQLNTYGF+K+  +RWEFANE F GG+KHLLK IKRR    ++     +  C++ 
Sbjct: 80  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMSQQGSGPCIEV 139

Query: 238 AKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297
             +G+E ELE L+ D+  L  E++KLRQQQ  +  Q+ A+ E+I   E KQ+QM+NF AK
Sbjct: 140 GYYGMEEELERLKRDKNVLMTEIVKLRQQQQSARNQIIAMGEKIESTEKKQEQMVNFLAK 199

Query: 298 IAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTAT-QLESQSVPESVDSSEN--VNCR 354
           I   P F+QQ + K  Q+++      ++ +K RLT T  +E+     SV ++ +  +N  
Sbjct: 200 IFSNPTFLQQYLDKHVQRKDKQ--RIEVGQKRRLTMTPSIENLQDVASVATASDQPMNYS 257

Query: 355 NQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCG 414
           NQ RE              A+ TNI  TD    F A ++++            NV     
Sbjct: 258 NQERE--------------AELTNIG-TDIEMLFSAALENES---------SSNV--RSA 291

Query: 415 NGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDSQLFHELEDLIGKSHSWGG 474
           +  T +  D   V       +LGD  I+ +G ++  + V   +   E+EDL+ K+  WG 
Sbjct: 292 SVVTASGTDMEPVPENIWEELLGDDHISGDGAEEVPI-VDQPEFVVEVEDLVSKTPVWGE 350

Query: 475 YVNELAEQV 483
            + +L +Q+
Sbjct: 351 ELEDLVDQL 359

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564043|ref|XP_003550266.1| PREDICTED: heat stress transcription factor A-2-like [Glycine max]

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 160/377 (42%), Positives = 216/377 (57%), Gaps = 60/377 (15%)

Query: 117 KPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHK 176
           +PMEGL+EVGPPPFL KI++MVEDP TD +VSWS+ RNSF+VW+SH FS ++LP+YFKH 
Sbjct: 32  QPMEGLHEVGPPPFLSKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHA 91

Query: 177 NFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRR---SRFNKAQDGTVTLA 233
           NFSSFIRQLNTYGF+K+  ++WEFANE F  G++HLLK IKRR   S  N+ + G+   A
Sbjct: 92  NFSSFIRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRNVSHSNQQKGGSG--A 149

Query: 234 CVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLN 293
           CV+  KFG+E ELE L+ D+  L  E+++LR QQ  S  Q+SA+  R++  E KQQQM++
Sbjct: 150 CVEVGKFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMEARMQATEKKQQQMMS 209

Query: 294 FFAKIAKYPNFVQQLVHKRKQQRE-LHGDEFKLSKKPRLTATQLESQSVPESVDSSENVN 352
           F AK    P+F+QQLVHK  Q RE L G E  +++K RL A             S EN+ 
Sbjct: 210 FLAKALSNPSFMQQLVHKTPQSREVLLGVE--INRKRRLPACP-----------SVENLQ 256

Query: 353 CRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCT 412
             NQ    LATM+           T++DT   P                           
Sbjct: 257 QDNQ---DLATME-----------TDMDTFFAPAYDNEF--------------------- 281

Query: 413 CGNGTTITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSD-SQLFHELEDLIGKSHS 471
              G  I    S  V ++ L + L    IT  G  +D+V + D +Q+   +EDL+     
Sbjct: 282 ---GNEIDEPASILVEDSILEDFLNKDLIT--GNPEDEVIIGDCTQVDVPMEDLVANPDD 336

Query: 472 WGGYVNELAEQVDCDGS 488
           W   + +L + +D  GS
Sbjct: 337 WSEQLQDLVDHMDYLGS 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092170|ref|XP_002309492.1| predicted protein [Populus trichocarpa] gi|222855468|gb|EEE93015.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 217/366 (59%), Gaps = 29/366 (7%)

Query: 119 MEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNF 178
           MEGLNEVGPPPFL K YEMVEDP TD VVSWS  RNSFIVW+SH FS  LLPK+FKH NF
Sbjct: 1   MEGLNEVGPPPFLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSHKFSTTLLPKHFKHSNF 60

Query: 179 SSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSA 238
           SSFIRQLNTYGF+K+  +RWEFANE F GG+KHLLK IKR+   ++        AC++  
Sbjct: 61  SSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRKRHLSQTTQQQGGGACIELG 120

Query: 239 KFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKI 298
           +F  E ELE L+ D+  L  E+++LRQQQ +S   ++A+ +R+R  E KQQ+++ F AK 
Sbjct: 121 QFEFEGELERLKRDRNVLMAEIVRLRQQQQQSREHIAAMEDRLRSTERKQQRVMTFLAKA 180

Query: 299 AKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNCRNQAR 358
              P+F++Q   +  Q+RE+ G E  + +K RLTA+            S EN+    Q  
Sbjct: 181 LNNPSFIEQFAQRAAQRREIRGVE--IGRKRRLTASP-----------SVENL----QEV 223

Query: 359 EQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDGLCRSPIQDLKGNVMCTCGNGTT 418
             +A   S+  D +  D   I+  +    F A++D++    S I+D   + M T   G+T
Sbjct: 224 ASVALGSSQFVDYMNQDLPTIE-NEMETLFSAVLDNE--SSSDIKDPIASSMDTASGGST 280

Query: 419 ITAQDSSSVYNTFLGNVLGDSSITENGTDDDQVAVSDS-QLFHELEDLIGKSHSWGGYVN 477
           + A     V  T    +L D  ++    + ++V VSD  ++  E+EDL+ K   W     
Sbjct: 281 LDA-----VNETIWEELLTDDLVS---GEPNEVVVSDEPEVDVEVEDLVAKPVDWSDDFQ 332

Query: 478 ELAEQV 483
           +L +Q+
Sbjct: 333 DLVDQM 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.453	0.643	0.557	6.9e-63
TAIR|locus:2166562	331	HSFA9 "AT5G54070" [Arabidopsis	0.424	0.628	0.579	1.5e-58
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.589	0.711	0.392	7.8e-55
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.522	0.527	0.414	1.7e-50
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.475	0.470	0.432	6.7e-49
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.534	0.544	0.403	8.5e-49
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.489	0.882	0.429	1.8e-48
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.581	0.608	0.380	1.8e-46
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.385	0.670	0.475	2.2e-43
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.408	0.709	0.440	2.8e-43

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 127/228 (55%), Positives = 159/228 (69%)

Query:   110 VGGGSLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLL 169
             VG  S P+PMEGLNE GPPPFL K YEMVEDP TD VVSWS  RNSF+VW+SH FS  LL
Sbjct:    25 VGSSSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLL 84

Query:   170 PKYFKHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRF---NKAQ 226
             P+YFKH NFSSFIRQLNTYGF+KI  +RWEFANE F  G+KHLLKNIKRR      N  Q
Sbjct:    85 PRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQ 144

Query:   227 DGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286
              G+  ++CV+  ++G + E+E L+ D   L  E+++LRQQQ  S  Q++A+ +R+   E 
Sbjct:   145 QGS-GMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEK 203

Query:   287 KQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTAT 334
             +QQQM+ F AK    PNFVQQ     K+++ L G    + +K RLT+T
Sbjct:   204 RQQQMMTFLAKALNNPNFVQQFAVMSKEKKSLFG--LDVGRKRRLTST 249

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2166562 HSFA9 "AT5G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 128/221 (57%), Positives = 162/221 (73%)

Query:   122 LNEVGP-PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSS 180
             L+E+G   PFLRK +E+V+D  TDPVVSWS  R SFI+W+S++FSENLLPKYFKHKNFSS
Sbjct:    63 LHEIGLITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSS 122

Query:   181 FIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKF 240
             FIRQLN+YGFKK+ S+RWEFANE F+GGKKHLLKNIKRRS+  K  +        +++  
Sbjct:   123 FIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNK-------EASTT 175

Query:   241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAK 300
               E E+E+L+ +Q  +RLEMLKL+QQQ+ES  QM  V E+I   + +QQ ML+FFAK+AK
Sbjct:   176 TTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAK 235

Query:   301 YPNFVQQLVHKRKQ--QRELHGDEFKLSKKPRLTATQLESQ 339
                FV++LV KRK   QREL   EF   KK +L   Q E+Q
Sbjct:   236 DQRFVERLVKKRKMKIQRELEAAEFV--KKLKLLQDQ-ETQ 273

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 120/306 (39%), Positives = 189/306 (61%)

Query:   114 SLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYF 173
             S P+P+EGL+E GPPPFL K Y++VED  T+ VVSWS + NSFIVW+   FS  LLP++F
Sbjct:    46 SYPQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFF 105

Query:   174 KHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKA-------- 225
             KH NFSSF+RQLNTYGF+K++ +RWEFANE F  G+KHLLKNI+RR   N +        
Sbjct:   106 KHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQS 165

Query:   226 -QDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284
              +  ++   C++  ++G++ E+++LR D++ L +E+++LRQQQ  +   ++ + E+++  
Sbjct:   166 SEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKT 225

Query:   285 ECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPES 344
             E KQ+QM++F A+  + P+F+QQLV ++++++E+   E  +SKK +    Q   ++V + 
Sbjct:   226 ESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEI---EEAISKKRQRPIDQ-GKRNVEDY 281

Query:   345 VDSSENVNCRNQAREQLATMQSELT--DMLPADSTNIDTTDTPPAFQALMDDDGLCRSPI 402
              D S   N    +   L  M  E T  +M   + + +D        Q L D+       +
Sbjct:   282 GDESGYGNDVAASSSALIGMSQEYTYGNMSEFEMSELDKLAMH--IQGLGDNSSAREEVL 339

Query:   403 QDLKGN 408
                KGN
Sbjct:   340 NVEKGN 345

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 112/270 (41%), Positives = 164/270 (60%)

Query:   116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
             P+P   L+   PPPFL K Y+MV+D  TD +VSWS N NSFIVW+  +F+ +LLPK FKH
Sbjct:    24 PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKH 83

Query:   176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRR------------SRFN 223
              NFSSF+RQLNTYGF+K+  +RWEFANE F  G+KHLL++I RR            S+ +
Sbjct:    84 NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHS 143

Query:   224 KAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283
               Q+ +V+ ACV+  KFG+E E+E L+ D+  L  E+++LRQQQ  +  Q+  + +R++ 
Sbjct:   144 NGQNSSVS-ACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQG 202

Query:   284 AECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPE 343
              E +QQQ+++F AK  + P+F+ Q + ++ QQ E +      SKK R     +   +   
Sbjct:   203 MENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRNNDSA 262

Query:   344 SVDSSENVNCRNQAREQLATMQSELTDMLP 373
             + D  + V  +    EQ   M  +L  M P
Sbjct:   263 TPDG-QIVKYQPPMHEQAKAMFKQLMKMEP 291

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 109/252 (43%), Positives = 153/252 (60%)

Query:   116 PKPMEGLNEVG-PPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFK 174
             P P   LN    PPPFL K Y+MVEDP TD +VSWS   NSFIVW+  +FS +LLPKYFK
Sbjct:    38 PHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFK 97

Query:   175 HKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRS-------------- 220
             H NFSSF+RQLNTYGF+K+  +RWEFANE F  G+KHLLK I RR               
Sbjct:    98 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQS 157

Query:   221 -RFNKAQDGTVTLA-CVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVA 278
              + ++ Q     L+ CV+  KFG+E E+E L+ D+  L  E++KLRQQQ  +  ++  + 
Sbjct:   158 QQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLV 217

Query:   279 ERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQL-E 337
             + ++  E +QQQ+++F AK  + P F+ Q + K+     +H  E    ++ R  +T   E
Sbjct:   218 KHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSN-MHVTEANKKRRLREDSTAATE 276

Query:   338 SQSVPESVDSSE 349
             S S   S+++S+
Sbjct:   277 SNSHSHSLEASD 288

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 117/290 (40%), Positives = 169/290 (58%)

Query:   114 SLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYF 173
             S+P P+   N V  PPFL K Y+MV+DP T+ VVSWS   NSF+VW + +FS+ LLPKYF
Sbjct:    17 SIPPPV---NSV--PPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYF 71

Query:   174 KHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRR--SRFNKAQDGTVT 231
             KH NFSSF+RQLNTYGF+K+  +RWEFANE F  G+K LLK+I RR  S   + Q  T  
Sbjct:    72 KHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQV 131

Query:   232 L-----ACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286
                   ACV+  KFG+E E+E L+ D+  L  E+++LRQQQ  +  Q+  V ++++  E 
Sbjct:   132 QSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQ 191

Query:   287 KQQQMLNFFAKIAKYPNFVQQLVHKRKQQ--RELHGDEFKLSKKPRLTATQLESQSVPES 344
             +QQQM++F AK  + P F+ QLV +      R++ G     +KK RL   + E++     
Sbjct:   192 RQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGS----NKKRRLPVDEQENRG---- 243

Query:   345 VDSSENVNCRNQAREQLATMQSELTDMLPADSTNIDTTDTPPAFQALMDD 394
                 +NV   N    Q+   Q  + +           T T P ++++ ++
Sbjct:   244 ----DNV--ANGLNRQIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNN 287

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 110/256 (42%), Positives = 161/256 (62%)

Query:   116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
             P+PMEGL+E  PPPFL K +EMV+DP TD +VSW+    SF+VW+ H FS  LLP++FKH
Sbjct:    16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKH 75

Query:   176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACV 235
              NFSSFIRQLNTYGF+KI + RWEFANE+F  G++ LLKNIKRR+ F  +   +   AC 
Sbjct:    76 SNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPSHD-ACN 134

Query:   236 DSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295
             +            LR +++ L +E++ LRQQQ  +   + A+ +RI   E KQ+QM++F 
Sbjct:   135 E------------LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFL 182

Query:   296 AKIAKYPNFVQQLVHKR-KQQRELHGDEFKLSKKPRLTATQLESQSVPESVDSSENVNCR 354
             A+  + P+F+ QL+ +R K+ +EL  +E    K+   + ++LE  ++ E     +  N  
Sbjct:   183 ARAMQSPSFLHQLLKQRDKKIKELEDNESAKRKRGSSSMSELEVLAL-EMQGHGKQRNML 241

Query:   355 NQAREQLATMQSELTD 370
              +   QL  ++ EL D
Sbjct:   242 EEEDHQLV-VERELDD 256

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 118/310 (38%), Positives = 173/310 (55%)

Query:   128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
             PPFL K Y+MV+DP TD VVSWS   NSF+VW   +F++  LPKYFKH NFSSF+RQLNT
Sbjct:    22 PPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNT 81

Query:   188 YGFKKIHSNRWEFANEKFRGGKKHLLKNIKRR--SRFNKAQDGTVTL----ACVDSAKFG 241
             YGF+K+  +RWEFANE F  G+K +LK+I RR  ++    Q   V      ACV+  KFG
Sbjct:    82 YGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFG 141

Query:   242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKY 301
             +E E+E L+ D+  L  E+++LRQQQ  +   +  V +++   E +QQQM++F AK  + 
Sbjct:   142 LEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQS 201

Query:   302 PNFVQQLVHKRKQQRELHGDEFKLSKKPRLTATQLESQSVPESVDS-SENVNCRNQAREQ 360
             P F+ Q   +  +  + H  E   +KK RL         V + ++S S  VN  ++   Q
Sbjct:   202 PGFLNQFSQQSNEANQ-HISES--NKKRRLP--------VEDQMNSGSHGVNGLSR---Q 247

Query:   361 LATMQSELTDMLPADSTNIDTTDTPPAFQALMDDDG---LCRSPIQDLKGNVMCTCGNGT 417
             +   QS + D        I      P+ ++L  ++G   L   P  ++  N   + G+  
Sbjct:   248 IVRYQSSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGDVPNSNISDNGSSSNGS-P 306

Query:   418 TITAQDSSSV 427
              +T  D SS+
Sbjct:   307 EVTLADVSSI 316

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 96/202 (47%), Positives = 129/202 (63%)

Query:   114 SLPKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYF 173
             +LP P+EGL E  P  FL K Y +VED  T+ +VSWS + NSFIVWE   F+   LP+ F
Sbjct:     4 NLPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCF 63

Query:   174 KHKNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLA 233
             KH NFSSF+RQLNTYGFKKI + RWEFANE F  G++HLLKNIKRR   ++ Q  T +L 
Sbjct:    64 KHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQ--TQSL- 120

Query:   234 CVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLN 293
                      E E+  LR D+  L +E+++LR++Q+     +  + E+++  E KQ+ M+N
Sbjct:   121 ---------EGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMN 171

Query:   294 FFAKIAKYPNFVQQLVHKRKQQ 315
             F  K  K P+F+Q L  KR  Q
Sbjct:   172 FLLKKIKKPSFLQSL-RKRNLQ 192

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 89/202 (44%), Positives = 130/202 (64%)

Query:   116 PKPMEGLNEVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKH 175
             P PMEGL E GP PFL K +EMV DP T+ +VSW+    SF+VW+ H FS  +LP YFKH
Sbjct:    15 PVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKH 74

Query:   176 KNFSSFIRQLNTYGFKKIHSNRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACV 235
              NFSSF+RQLNTYGF+KI + RWEF NE F  G++ LLK+IKRR+  +       + +  
Sbjct:    75 NNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQP 134

Query:   236 DSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295
             ++   GVE  L  LR ++  L +E+  LRQ++  +   + A+ +RI  AE KQ+ M++F 
Sbjct:   135 EAHDPGVE--LPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFL 192

Query:   296 AKIAKYPNFVQQLVHKRKQQRE 317
              +  + P+ +QQ+  +++ + E
Sbjct:   193 RRAVENPSLLQQIFEQKRDREE 214

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016537001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (398 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	490
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	8e-50
smart00415	105	smart00415, HSF, heat shock factor	2e-45
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	8e-27
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  164 bits (419), Expect = 8e-50
 Identities = 53/94 (56%), Positives = 71/94 (75%), Gaps = 2/94 (2%)

Query: 129 PFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTY 188
           PFL K+YE++EDP  D ++SWS + NSFI+W+  +F++ +LPKYFKH NFSSF+RQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 189 GFKKIHSNR--WEFANEKFRGGKKHLLKNIKRRS 220
           GF K+  +R  WEFA+  F+ G+K LL  IKRR 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRK 94

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  153 bits (390), Expect = 2e-45
 Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 11/105 (10%)

Query: 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQL 185
            PPPFL K+Y +VEDP TD ++SWS +  SF++W+  +F++NLLP+YFKH NFSSF+RQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 186 NTYGFKKIHSN-----------RWEFANEKFRGGKKHLLKNIKRR 219
           N YGF+K+              +WEFAN  F  G+  LL+NIKR+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  109 bits (273), Expect = 8e-27
 Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 10/103 (9%)

Query: 127 PPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLN 186
           P  F+ K+Y+++E+PE   ++ WS +  SF++ +  +F++ +LP+YFKH NF+SF+RQLN
Sbjct: 10  PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN 69

Query: 187 TYGFKKI-HS---------NRWEFANEKFRGGKKHLLKNIKRR 219
            YGF K+ H          N WEF N+ F+ G   LLK IKR+
Sbjct: 70  KYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRK 112

Length = 282

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 39  EETVETENKIPLITVKEDEEEEKEAST---------YENSNGGGPSSSSSSMPTLPRIKE 89
           +E           T  +DE  E+E +           +  +GGG S    S       +E
Sbjct: 813 DEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEE 872

Query: 90  EEEEEEEEEEEEE 102
           EEEEEEEEEEEEE
Sbjct: 873 EEEEEEEEEEEEE 885

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	490
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
smart00415	105	HSF heat shock factor.	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.97
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	94.73
smart00413	87	ETS erythroblast transformation specific domain. v	92.07
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	90.2
KOG3806	177	consensus Predicted transcription factor [Transcri	87.09
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.02
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.2
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	82.53
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.7
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	81.51

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=6.2e-44  Score=357.49  Aligned_cols=187  Identities=42%  Similarity=0.786  Sum_probs=171.3

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc--CCcceEecC
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH--SNRWEFANE  203 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~--~~~~eF~h~  203 (490)
                      ++++|+.|||.||+||.++++|+|+++|++|||||+..|++.+||+||||+||+|||||||+||||||+  +++|||+|+
T Consensus        11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~   90 (304)
T KOG0627|consen   11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP   90 (304)
T ss_pred             CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence            689999999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             CCcCCccccchhhcccCCCCCCCCC--Ccc--------cccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260          204 KFRGGKKHLLKNIKRRSRFNKAQDG--TVT--------LACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQ  273 (490)
Q Consensus       204 ~F~RG~~~LL~~IkRk~~~~~~q~~--~~~--------~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~Q  273 (490)
                      +|+||+++||++|+||+...+....  ...        ..+....+..+..++.+|+++++.|+.|+.+||+++..+..+
T Consensus        91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~  170 (304)
T KOG0627|consen   91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT  170 (304)
T ss_pred             hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999988654321  110        112334566789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 011260          274 MSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKR  312 (490)
Q Consensus       274 L~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq~~  312 (490)
                      ++.+.+++...+++|++|+.|++++++.|.|+.++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            999999999999999999999999999999999998853

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=5e-34  Score=245.38  Aligned_cols=93  Identities=54%  Similarity=1.044  Sum_probs=81.7

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCcccccCCc---------ce
Q 011260          129 PFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNR---------WE  199 (490)
Q Consensus       129 ~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~~~~---------~e  199 (490)
                      .||.|||+||+||.++++|+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+....         |+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            599999999999999999999999999999999999999999999999999999999999999997532         99


Q ss_pred             EecCCCcCCccccchhhcccCC
Q 011260          200 FANEKFRGGKKHLLKNIKRRSR  221 (490)
Q Consensus       200 F~h~~F~RG~~~LL~~IkRk~~  221 (490)
                      |+|++|+||++++|.+|+||++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=100.00  E-value=8.7e-34  Score=245.78  Aligned_cols=94  Identities=57%  Similarity=1.185  Sum_probs=90.7

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCcccccC----------
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHS----------  195 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~~----------  195 (490)
                      ++|.|+.|||.||+|+.+++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999876          


Q ss_pred             -CcceEecCCCcCCccccchhhccc
Q 011260          196 -NRWEFANEKFRGGKKHLLKNIKRR  219 (490)
Q Consensus       196 -~~~eF~h~~F~RG~~~LL~~IkRk  219 (490)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             679999999999999999999996

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.97  E-value=1.5e-32  Score=274.48  Aligned_cols=146  Identities=34%  Similarity=0.659  Sum_probs=112.4

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc-C---------
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH-S---------  195 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~-~---------  195 (490)
                      .++.|++|||.||++|++..+|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+||||||. .         
T Consensus         9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~   88 (282)
T COG5169           9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE   88 (282)
T ss_pred             chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence            457999999999999999999999999999999999999999999999999999999999999999997 2         


Q ss_pred             CcceEecCCCcCCccccchhhcccCCCCCCCCCCc-ccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260          196 NRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTV-TLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQM  274 (490)
Q Consensus       196 ~~~eF~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~-~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL  274 (490)
                      +.|+|.|++|++|..++|++|+|++.......... +..|..    .  .+++.+-..+..+..++-+|....+.++..+
T Consensus        89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~----~--~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~  162 (282)
T COG5169          89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMM----N--IEVENIILPQSELYNSLSSLSNVNQTLLLYL  162 (282)
T ss_pred             hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCcccc----c--hhhhhhhchhcccCcchhHHhhhhHHHhhhh
Confidence            24999999999999999999999776544311111 111110    0  3455554555555555555555555544444


Q ss_pred             HHH
Q 011260          275 SAV  277 (490)
Q Consensus       275 ~~m  277 (490)
                      ..+
T Consensus       163 ~~l  165 (282)
T COG5169         163 NEL  165 (282)
T ss_pred             ccc
Confidence            443

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=94.73  E-value=0.023  Score=48.52  Aligned_cols=58  Identities=21%  Similarity=0.422  Sum_probs=45.6

Q ss_pred             HHHHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhccc--ccCCCChhHHHHHhhccC
Q 011260          131 LRKIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLPK--YFKHKNFSSFIRQLNTYG  189 (490)
Q Consensus       131 l~KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~--yFKhsnfsSFvRQLN~YG  189 (490)
                      ..=|.++|.|+++.++|+|.. .+.-|.|.|++++++ +...  --..-+|.++-|-|..|.
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~-lWG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVAR-LWGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHH-HHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHH-HHHHHcCCccccHHHHHHHHHHHh
Confidence            344678899999999999998 999999999999986 3322  223467899999998774

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=92.07  E-value=0.25  Score=42.71  Aligned_cols=57  Identities=18%  Similarity=0.356  Sum_probs=44.0

Q ss_pred             HHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccC
Q 011260          133 KIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYG  189 (490)
Q Consensus       133 KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YG  189 (490)
                      =|.++|.||++.++|+|.. ++.-|.+.|+++.++.=-. +-=..-||..+-|-|..|-
T Consensus         7 FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        7 FLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998 6889999999988763211 1113567888888888774

variation of the helix-turn-helix motif

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=90.20  E-value=0.82  Score=41.76  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 011260          254 KTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKR  312 (490)
Q Consensus       254 ~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq~~  312 (490)
                      ++.+.||..|++.+..+...+.+|.+++..+++.+++|..+-||++++   |...+.+.
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkC   57 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKC   57 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhc
Confidence            456789999999999999999999999999999999999999999986   66666654

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=87.09  E-value=0.8  Score=44.29  Aligned_cols=62  Identities=13%  Similarity=0.297  Sum_probs=46.3

Q ss_pred             CCcHHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhccccc-CCCChhHHHHHhhcc
Q 011260          127 PPPFLRKIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLPKYF-KHKNFSSFIRQLNTY  188 (490)
Q Consensus       127 ~~~Fl~KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~yF-KhsnfsSFvRQLN~Y  188 (490)
                      .-...+=|-++|.|+.+.++|.|.. +|--|.+.|+++-++.---+=- .+-||.-.-|-|..|
T Consensus        68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            3445555667889999999999998 7889999999998874322212 256777777877766

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.02  E-value=7.1  Score=32.57  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260          242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA  284 (490)
Q Consensus       242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~  284 (490)
                      |..|++.||.++..|..+...|+++.+.+..+..+..+||+++
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566667777666666666666666666666666666666554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.20  E-value=4.9  Score=34.31  Aligned_cols=42  Identities=24%  Similarity=0.418  Sum_probs=28.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 011260          242 VEMELETLRNDQKTLRLEMLK-------LRQQQDESLCQMSAVAERIRC  283 (490)
Q Consensus       242 Le~Ele~LKrDq~~L~~El~k-------LrQqQq~~~~QL~~meeRl~~  283 (490)
                      |..||+.||.++..|..|+..       |+++++.++.+...-++||+.
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888888888877       555555555555555555544

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=82.53  E-value=5.3  Score=39.07  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             ecCCCcCCccccchhhcccCCCCCCCCCCcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260          201 ANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAER  280 (490)
Q Consensus       201 ~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeR  280 (490)
                      .||.|...+++||..|+=..+    + ++.    +                  ......+..||++++.++.++..|-+.
T Consensus        17 ~~PdFf~~~~~ll~~l~~ph~----~-~~a----v------------------SL~erQ~~~LR~~~~~L~~~l~~Li~~   69 (225)
T PF04340_consen   17 QHPDFFERHPELLAELRLPHP----S-GGA----V------------------SLVERQLERLRERNRQLEEQLEELIEN   69 (225)
T ss_dssp             -----------------------------H----H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHhCHHHHHHcCCCCC----C-CCc----c------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999998874221    1 111    1                  122344667777777777888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCchh
Q 011260          281 IRCAECKQQQMLNFFAKIAKYPNF  304 (490)
Q Consensus       281 l~~~E~kQqQml~FLakalqnP~F  304 (490)
                      -+..++.++++..+..++++-.++
T Consensus        70 Ar~Ne~~~~~~~~l~l~LL~a~sl   93 (225)
T PF04340_consen   70 ARENEAIFQRLHRLVLALLAARSL   93 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--SH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCH
Confidence            888888888888888888775543

; PDB: 3E98_B.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.70  E-value=9.1  Score=32.24  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260          242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAE  279 (490)
Q Consensus       242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~mee  279 (490)
                      +..||+.||..++.|..|+..++++...+..+-..+.+
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~   60 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE   60 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889998888888888877776666555444443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.51  E-value=13  Score=37.11  Aligned_cols=60  Identities=13%  Similarity=0.231  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011260          241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAK  300 (490)
Q Consensus       241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalq  300 (490)
                      .+..+++.|+++...|...+.++..+......++..+++++...+...+.|.-+|.+++.
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666666666666677777777777777777777777777654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	490
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		2e-18
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		6e-15
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		1e-14
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		1e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		8e-14
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-13
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-13
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-13

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 11/103 (10%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P FL K++ +V DP+TD ++ WS + NSF V++   F++ +LPKYFKH N +SF+RQLN 
Sbjct: 18  PAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNM 77
Query: 188 YGFKKI-----------HSNRWEFANEKFRGGKKHLLKNIKRR 219
           YGF+K+             +  EF +  F  G++ LL+NIKR+
Sbjct: 78  YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQL 185
           G P FL K++ +V+D +T+ ++ W+ +  SF++     F++ LLP  +KH N +SFIRQL
Sbjct: 3   GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQL 62
Query: 186 NTYGFKKIHS----------NRWEFANEKFRGGKKHLLKNIKRR 219
           N YGF KI S          +  EF++  F+     LL  IKR+
Sbjct: 63  NMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P F+ K++ MV D   +  + WS +  S +V     F + +LPKYFKH NF+SF+RQLN 
Sbjct: 13  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 188 YGFKKI-----------HSNRWEFANEK 204
           YG+ K+           + +RWEF NE+
Sbjct: 73  YGWHKVQDVKSGSMLSNNDSRWEFENER 100

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P F+ K++ MV D   +  + WS +  S +V     F + +LPKYFKH NF+SF+RQLN 
Sbjct: 3   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 188 YGFKKI-----------HSNRWEFANEK 204
           YG+ K+           + +RWEF NE+
Sbjct: 63  YGWHKVQDVKSGSMLSNNDSRWEFENER 90

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P F+ K++  V D   +  + WS +  S +V     F + +LPKYFKH NF+SF+RQLN 
Sbjct: 3   PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 188 YGFKKI-----------HSNRWEFANEK 204
           YG+ K+           + +RWEF NE+
Sbjct: 63  YGWHKVQDVKSGSXLSNNDSRWEFENER 90

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P F+ K++ MV D   +  + WS +  S +V     F + +L KYFKH NF+SF+RQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 188 YGFKKI-----------HSNRWEFANEK 204
           YG+ K+           + +RWEF NE+
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENER 88

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P F+ K++ MV D   +  + WS +  S +V     F + +L KYFKH NF+SF+RQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 188 YGFKKI-----------HSNRWEFANEK 204
           YG+ K+           + +RWEF NE+
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENER 88

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
           P F+ K++ MV D   +  + WS +  S +V     F + +LPKYFKH NF+SF+RQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 188 YGFKKI-----------HSNRWEFANEK 204
           YG+ K+           + +RWEF NE+
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENER 88
  Database: pdbaa

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	490
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
1awc_A	110	Protein (GA binding protein alpha); complex (trans	88.29
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	86.42
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	85.75
4avp_A	106	ETS translocation variant 1; transcription, transc	85.64
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	84.62
2dao_A	118	Transcription factor ETV6; ETS domain, structural	83.22
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	82.78
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	82.68
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.23
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	80.18

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=1.5e-38  Score=275.46  Aligned_cols=94  Identities=40%  Similarity=0.819  Sum_probs=90.8

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc----------C
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH----------S  195 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~----------~  195 (490)
                      ++|+|+.|||.||+||+++++|+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||||+.          +
T Consensus         3 ~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~   82 (106)
T 1hks_A            3 GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDR   82 (106)
T ss_dssp             TCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTT
T ss_pred             CcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999985          4


Q ss_pred             CcceEecCCCcCCccccchhhccc
Q 011260          196 NRWEFANEKFRGGKKHLLKNIKRR  219 (490)
Q Consensus       196 ~~~eF~h~~F~RG~~~LL~~IkRk  219 (490)
                      +.|+|+|++|+||+|+||.+|+||
T Consensus        83 ~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           83 DEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             STTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CceEEECcCccCcCHHHHhhCcCC
Confidence            679999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=8.2e-38  Score=278.54  Aligned_cols=99  Identities=44%  Similarity=0.847  Sum_probs=94.0

Q ss_pred             CCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc---------
Q 011260          124 EVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH---------  194 (490)
Q Consensus       124 ~~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~---------  194 (490)
                      ..+.++||.|||.||+||++++||+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||+|+.         
T Consensus        14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~   93 (125)
T 2ldu_A           14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVK   93 (125)
T ss_dssp             SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSS
T ss_pred             CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccccc
Confidence            44679999999999999999999999999999999999999999999999999999999999999999984         


Q ss_pred             --CCcceEecCCCcCCccccchhhcccCCC
Q 011260          195 --SNRWEFANEKFRGGKKHLLKNIKRRSRF  222 (490)
Q Consensus       195 --~~~~eF~h~~F~RG~~~LL~~IkRk~~~  222 (490)
                        ++.|+|+||+|+||+|+||.+|+||++.
T Consensus        94 ~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           94 PERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             CSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             CCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence              4679999999999999999999999875

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=9.2e-32  Score=232.34  Aligned_cols=81  Identities=43%  Similarity=0.920  Sum_probs=76.9

Q ss_pred             CCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc---------
Q 011260          124 EVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH---------  194 (490)
Q Consensus       124 ~~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~---------  194 (490)
                      ...+|+|+.|||.||+||.++++|+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||||+.         
T Consensus         9 ~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~   88 (102)
T 3hts_B            9 SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLS   88 (102)
T ss_dssp             -CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------
T ss_pred             CCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999997         


Q ss_pred             --CCcceEecCC
Q 011260          195 --SNRWEFANEK  204 (490)
Q Consensus       195 --~~~~eF~h~~  204 (490)
                        +++|||+|++
T Consensus        89 ~~~~~wEF~n~~  100 (102)
T 3hts_B           89 NNDSRWEFENER  100 (102)
T ss_dssp             CCSCCEEEEECC
T ss_pred             CCcCCeEecCCC
Confidence              6789999986

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=88.29  E-value=0.48  Score=41.39  Aligned_cols=69  Identities=16%  Similarity=0.298  Sum_probs=50.2

Q ss_pred             HHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcceEe
Q 011260          133 KIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWEFA  201 (490)
Q Consensus       133 KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~eF~  201 (490)
                      =|.++|.|+++.++|+|...+.-|.+.|++..++.--.+ -=..-||...-|-|..|.=+    |+...+..|.
T Consensus         6 FLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~   79 (110)
T 1awc_A            6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence            367889999999999999999999999999888743322 11356788899988888533    3444445554

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=86.42  E-value=0.53  Score=40.57  Aligned_cols=76  Identities=16%  Similarity=0.341  Sum_probs=54.7

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCc----ccccCCcceE
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGF----KKIHSNRWEF  200 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF  200 (490)
                      |......=|.++|+|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-=    +||...+..|
T Consensus         6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vY   85 (102)
T 2ypr_A            6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAY   85 (102)
T ss_dssp             SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEE
T ss_pred             CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence            3345556677889999999999999889999999998888732221 1146789999999988743    3555455555


Q ss_pred             e
Q 011260          201 A  201 (490)
Q Consensus       201 ~  201 (490)
                      .
T Consensus        86 k   86 (102)
T 2ypr_A           86 R   86 (102)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=85.75  E-value=0.55  Score=40.23  Aligned_cols=62  Identities=13%  Similarity=0.282  Sum_probs=47.0

Q ss_pred             CcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccC
Q 011260          128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYG  189 (490)
Q Consensus       128 ~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YG  189 (490)
                      .....=|.++|.|+.+.++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-
T Consensus         6 ~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             eeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            34455567788999999999999988999999998888742221 113678888888888774

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=85.64  E-value=0.68  Score=40.14  Aligned_cols=76  Identities=17%  Similarity=0.340  Sum_probs=55.7

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccCc----ccccCCcceE
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYGF----KKIHSNRWEF  200 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF  200 (490)
                      |......=|.++|+|+++.++|+|...+..|.+.|++..++.--. +-=..-||..+-|-|..|-=    +||...+..|
T Consensus        10 g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vY   89 (106)
T 4avp_A           10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY   89 (106)
T ss_dssp             -CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEE
T ss_pred             CcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEE
Confidence            444566667889999999999999998889999999988873222 11146789999999988742    3555556666


Q ss_pred             e
Q 011260          201 A  201 (490)
Q Consensus       201 ~  201 (490)
                      .
T Consensus        90 k   90 (106)
T 4avp_A           90 K   90 (106)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=84.62  E-value=0.62  Score=39.55  Aligned_cols=75  Identities=15%  Similarity=0.352  Sum_probs=55.3

Q ss_pred             CcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccCc----ccccCCcceEec
Q 011260          128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYGF----KKIHSNRWEFAN  202 (490)
Q Consensus       128 ~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF~h  202 (490)
                      .....=|.++|.|++..++|+|...+.-|.+.|+++.++.--. +-=..-||..+-|-|..|-=    +|+...+..|..
T Consensus         5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F   84 (93)
T 1bc8_C            5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   84 (93)
T ss_dssp             CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred             ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            4455667889999999999999988889999999988874322 11246789999999988842    245545666654

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.22  E-value=1.2  Score=39.37  Aligned_cols=77  Identities=14%  Similarity=0.288  Sum_probs=55.6

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhcc---C-cccccCCcce
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTY---G-FKKIHSNRWE  199 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~Y---G-F~Kv~~~~~e  199 (490)
                      +......=|.++|.|+.+.++|+|.. ++.-|.+.|++..++.--.+ -=..-||..+-|-|..|   | .+|+...+..
T Consensus         7 g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~v   86 (118)
T 2dao_A            7 GCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLL   86 (118)
T ss_dssp             CCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSE
T ss_pred             cchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEE
Confidence            34556667888999999999999987 45689999999887743222 11357899999999988   3 3355555555


Q ss_pred             Eec
Q 011260          200 FAN  202 (490)
Q Consensus       200 F~h  202 (490)
                      |..
T Consensus        87 Y~F   89 (118)
T 2dao_A           87 FRF   89 (118)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=82.78  E-value=1.2  Score=41.52  Aligned_cols=78  Identities=18%  Similarity=0.318  Sum_probs=58.2

Q ss_pred             CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcce
Q 011260          125 VGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWE  199 (490)
Q Consensus       125 ~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~e  199 (490)
                      .|+.....=|.++|.|+...++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-=+    |+...+..
T Consensus        62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  141 (171)
T 2nny_A           62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  141 (171)
T ss_dssp             CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEE
Confidence            35667777788999999999999999999999999999988743221 11356799999999888644    45445555


Q ss_pred             Eec
Q 011260          200 FAN  202 (490)
Q Consensus       200 F~h  202 (490)
                      |..
T Consensus       142 Y~F  144 (171)
T 2nny_A          142 YRF  144 (171)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=82.68  E-value=0.97  Score=41.25  Aligned_cols=78  Identities=18%  Similarity=0.310  Sum_probs=58.9

Q ss_pred             CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcce
Q 011260          125 VGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWE  199 (490)
Q Consensus       125 ~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~e  199 (490)
                      .++.....=|.++|.|+...++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-=+    |+...+..
T Consensus        37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  116 (146)
T 1gvj_A           37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  116 (146)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            46667777888999999999999999999999999999988743221 11356799999999888544    55545566


Q ss_pred             Eec
Q 011260          200 FAN  202 (490)
Q Consensus       200 F~h  202 (490)
                      |..
T Consensus       117 Y~F  119 (146)
T 1gvj_A          117 YRF  119 (146)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=80.23  E-value=11  Score=31.24  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260          242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV  277 (490)
Q Consensus       242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m  277 (490)
                      +..|++.||.++..|..|...++.....+..+...+
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL   60 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL   60 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            456788888888888777777444333333333333

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=80.18  E-value=2.1  Score=36.87  Aligned_cols=74  Identities=14%  Similarity=0.252  Sum_probs=50.0

Q ss_pred             cHHHHHHhhccCCC-CCCceEEcCC-CCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCc----ccccCCcceEe
Q 011260          129 PFLRKIYEMVEDPE-TDPVVSWSLN-RNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGF----KKIHSNRWEFA  201 (490)
Q Consensus       129 ~Fl~KLy~mVedp~-~~~iI~Ws~d-G~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF~  201 (490)
                      ....=|.++|.|++ ..++|+|... ..-|.+.|++..++.--.+ -=..-||..+-|-|..|-=    +|+...+..|.
T Consensus         6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~   85 (103)
T 3jtg_A            6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK   85 (103)
T ss_dssp             SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred             cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence            34445677889988 5689999874 5689999998888632211 1146789999999988832    34544555554


Q ss_pred             c
Q 011260          202 N  202 (490)
Q Consensus       202 h  202 (490)
                      .
T Consensus        86 F   86 (103)
T 3jtg_A           86 F   86 (103)
T ss_dssp             B
T ss_pred             e
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	490
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	2e-40
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	9e-37

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  139 bits (351), Expect = 2e-40
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 10/104 (9%)

Query: 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQL 185
           G P FL K++ +V+D +T+ ++ W+ +  SF++     F++ LLP  +KH N +SFIRQL
Sbjct: 3   GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQL 62

Query: 186 NTYGFKKIHS----------NRWEFANEKFRGGKKHLLKNIKRR 219
           N YGF KI S          +  EF++  F+     LL  IKR+
Sbjct: 63  NMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  128 bits (323), Expect = 9e-37
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 11/91 (12%)

Query: 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQL 185
             P F+ K++ MV D   +  + WS +  S +V     F + +LPKYFKH NF+SF+RQL
Sbjct: 1   ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 60

Query: 186 NTYGFKKI-----------HSNRWEFANEKF 205
           N YG+ K+           + +RWEF NE+ 
Sbjct: 61  NMYGWHKVQDVKSGSMLSNNDSRWEFENERH 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	490
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.95
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	94.0
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	90.03
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	89.7
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	87.68
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	85.41
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	84.94

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=2e-35  Score=253.44  Aligned_cols=94  Identities=40%  Similarity=0.819  Sum_probs=89.7

Q ss_pred             CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc----------C
Q 011260          126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH----------S  195 (490)
Q Consensus       126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~----------~  195 (490)
                      ++|+|+.|||+||+|+++++||+|+++|++|||+|+.+|.+.|||+||+|+||+||+||||+|||+|+.          +
T Consensus         3 ~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~   82 (106)
T d1hksa_           3 GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDR   82 (106)
T ss_dssp             TCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTT
T ss_pred             CCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCCC
Confidence            678999999999999999999999999999999999999999999999999999999999999999984          3


Q ss_pred             CcceEecCCCcCCccccchhhccc
Q 011260          196 NRWEFANEKFRGGKKHLLKNIKRR  219 (490)
Q Consensus       196 ~~~eF~h~~F~RG~~~LL~~IkRk  219 (490)
                      +.++|+|++|+||+|+||.+|+||
T Consensus        83 ~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          83 DEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             STTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CccEEECccccCCCHHHHhhCcCC
Confidence            468999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.95  E-value=1.6e-29  Score=212.61  Aligned_cols=78  Identities=45%  Similarity=0.946  Sum_probs=73.7

Q ss_pred             CCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc-----------C
Q 011260          127 PPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH-----------S  195 (490)
Q Consensus       127 ~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~-----------~  195 (490)
                      .|+|+.|||.||+|+++++||+|+++|++|||+|+..|.+.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999985           3


Q ss_pred             CcceEecCC
Q 011260          196 NRWEFANEK  204 (490)
Q Consensus       196 ~~~eF~h~~  204 (490)
                      +.|+|+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            569999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=94.00  E-value=0.013  Score=49.40  Aligned_cols=74  Identities=14%  Similarity=0.364  Sum_probs=53.5

Q ss_pred             CcHHHHHHhhcc----CCCCCC--ceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCcccccCC---cc
Q 011260          128 PPFLRKIYEMVE----DPETDP--VVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSN---RW  198 (490)
Q Consensus       128 ~~Fl~KLy~mVe----dp~~~~--iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~~~---~~  198 (490)
                      ..|+.|||.+|.    +|....  =|.|..++. |.| |...|++ +|--     +-.|.-.-|..|||+++..+   -|
T Consensus        28 ~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~-lLgi-----K~ntlN~Nfr~~gF~q~~~d~~~~~   99 (114)
T d1pp7u_          28 SRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVAL-VMGI-----KLNTLNVNLRDLAFEQLQHDKGGWT   99 (114)
T ss_dssp             GSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHH-HHTC-----CHHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHH-HHCC-----ChhhhcCcccccCceeeecCCCcce
Confidence            689999999997    343322  279999996 654 9999987 4432     23566677888999988653   35


Q ss_pred             eEecCCCcCCc
Q 011260          199 EFANEKFRGGK  209 (490)
Q Consensus       199 eF~h~~F~RG~  209 (490)
                      .++++.|.|.-
T Consensus       100 ~w~~~~F~~nS  110 (114)
T d1pp7u_         100 QWKRSGFTRNS  110 (114)
T ss_dssp             EEECTTEETTE
T ss_pred             eeccCCccccc
Confidence            67899998753

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.066  Score=43.87  Aligned_cols=61  Identities=15%  Similarity=0.304  Sum_probs=45.2

Q ss_pred             cHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccC
Q 011260          129 PFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYG  189 (490)
Q Consensus       129 ~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YG  189 (490)
                      .-..=|.++|.|+++.++|+|...+.-|.+.|+++.++.=-. +-=..-||..+-|-|..|-
T Consensus         7 ~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            344456778999999999999888888999999988873221 1112358888888887763

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.70  E-value=0.18  Score=41.93  Aligned_cols=56  Identities=18%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccC
Q 011260          134 IYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYG  189 (490)
Q Consensus       134 Ly~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YG  189 (490)
                      |.++|.|++..++|+|...+.-|.+.|+++.++.=-. +-=..-||..+-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            6778899999999999998889999999998873221 1123578899999998884

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=0.12  Score=45.51  Aligned_cols=68  Identities=16%  Similarity=0.422  Sum_probs=51.7

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccC----cccccCCcceEe
Q 011260          134 IYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYG----FKKIHSNRWEFA  201 (490)
Q Consensus       134 Ly~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YG----F~Kv~~~~~eF~  201 (490)
                      |.++|.|+.+.++|+|...+.-|.+.|+++.++.--. +.=..-||..+-|-|..|-    .+||...++.|.
T Consensus        10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_          10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            5678899999999999988889999999999874222 2124578999999998874    335555666765

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.17  Score=40.48  Aligned_cols=56  Identities=14%  Similarity=0.332  Sum_probs=42.6

Q ss_pred             HHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccC
Q 011260          134 IYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYG  189 (490)
Q Consensus       134 Ly~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YG  189 (490)
                      |.++|.|+++.++|+|.. ++.-|.+.|+++.++.=-. +-=..-||..+-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY   64 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY   64 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            456778999999999998 6899999999998873211 1123468889999988774

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=0.19  Score=43.50  Aligned_cols=77  Identities=18%  Similarity=0.318  Sum_probs=54.7

Q ss_pred             CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccCc----ccccCCcce
Q 011260          125 VGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYGF----KKIHSNRWE  199 (490)
Q Consensus       125 ~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YGF----~Kv~~~~~e  199 (490)
                      .+....-.=|.++|.|+.+.++|+|...+..|.+.|+++.++.--. +-=..-||..+-|-|..|-=    +||...+..
T Consensus        37 ~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl~  116 (142)
T d1gvja_          37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  116 (142)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred             CCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEEE
Confidence            3445566667889999999999999988888999999998873211 11135788899999887742    244444555


Q ss_pred             Ee
Q 011260          200 FA  201 (490)
Q Consensus       200 F~  201 (490)
                      |.
T Consensus       117 Yk  118 (142)
T d1gvja_         117 YR  118 (142)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53